Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCD3	5825	broad.mit.edu	37	1	94953300	94953300	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38899622	38899622	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21225774	21225774	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf2	56652	broad.mit.edu	37	10	102749574	102749574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53844188	53844188	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38853135	38853135	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD300LG	146894	broad.mit.edu	37	17	41931245	41931246	+	Missense_Mutation	DNP	GC	TA	TA	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD74	972	broad.mit.edu	37	5	149792311	149792311	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92252376	92252376	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117265695	117265695	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLSPN	63967	broad.mit.edu	37	1	36230187	36230187	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47545531	47545531	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CXorf21	80231	broad.mit.edu	37	X	30578381	30578381	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104438314	104438314	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCTD	1635	broad.mit.edu	37	4	183836682	183836682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ELK4	2005	broad.mit.edu	37	1	205589605	205589605	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ERP44	23071	broad.mit.edu	37	9	102822388	102822388	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114282567	114282567	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ISG20L2	81875	broad.mit.edu	37	1	156697247	156697247	+	Silent	SNP	C	T	T	rs61742814	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6983136	6983136	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70493872	70493872	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132643865	132643865	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25008976	25008976	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21689243	21689243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52668655	52668655	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130454821	130454821	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLA2G16	11145	broad.mit.edu	37	11	63357820	63357820	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120021872	120021872	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109384150	109384150	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF145	153830	broad.mit.edu	37	5	158603687	158603687	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPS2	6187	broad.mit.edu	37	16	2012906	2012906	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7231393	7231393	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
S100A5	6276	broad.mit.edu	37	1	153509895	153509895	+	Silent	SNP	G	A	A	rs3795395	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCG2	7857	broad.mit.edu	37	2	224463043	224463043	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEPT7	989	broad.mit.edu	37	7	35930362	35930362	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	318976	318976	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNW1	22938	broad.mit.edu	37	14	78217740	78217740	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TBC1D19	55296	broad.mit.edu	37	4	26741524	26741524	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSPAN1	10103	broad.mit.edu	37	1	46646810	46646810	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UIMC1	51720	broad.mit.edu	37	5	176332369	176332369	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55566554	55566554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFP3	124961	broad.mit.edu	37	17	4995604	4995604	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53209367	53209367	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF622	90441	broad.mit.edu	37	5	16465400	16465400	+	Missense_Mutation	SNP	C	G	G	rs113566156	by1000genomes	TCGA-BP-5170-01	TCGA-BP-5170-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
