Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAMTS17	170691	broad.mit.edu	37	15	100594117	100594117	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43777521	43777521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARNTL2	56938	broad.mit.edu	37	12	27529304	27529304	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79166553	79166553	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
B3GNTL1	146712	broad.mit.edu	37	17	80915092	80915092	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAHCC1	57597	broad.mit.edu	37	17	79410342	79410342	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf101	54916	broad.mit.edu	37	14	57070637	57070637	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C15orf60	283677	broad.mit.edu	37	15	73843391	73843391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CA5B	11238	broad.mit.edu	37	X	15790716	15790716	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNG6	59285	broad.mit.edu	37	19	54515324	54515324	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46793698	46793698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31912529	31912529	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160302290	160302290	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36767798	36767798	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211473212	211473212	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47970565	47970565	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAJC18	202052	broad.mit.edu	37	5	138749940	138749940	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DTX4	23220	broad.mit.edu	37	11	58949232	58949232	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EHBP1L1	254102	broad.mit.edu	37	11	65346872	65346872	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56277703	56277703	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103520522	103520522	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128680490	128680490	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46174612	46174612	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR148	344561	broad.mit.edu	37	2	131487497	131487497	+	Missense_Mutation	SNP	G	T	T	rs113110453	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102503298	102503298	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KHDRBS1	10657	broad.mit.edu	37	1	32504213	32504213	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245848753	245848753	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLK6	5653	broad.mit.edu	37	19	51462556	51462556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142238027	142238027	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MDGA1	266727	broad.mit.edu	37	6	37626191	37626191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70341181	70341181	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59834429	59834429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUCL1	118430	broad.mit.edu	37	12	55250594	55250594	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDUFA6	4700	broad.mit.edu	37	22	42482196	42482196	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178098956	178098956	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NONO	4841	broad.mit.edu	37	X	70516749	70516749	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140712520	140712520	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15126793	15126793	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110476839	110476839	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8698474	8698474	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40903260	40903260	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBM33	155435	broad.mit.edu	37	7	155465597	155465597	+	Silent	SNP	A	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
REXO1	57455	broad.mit.edu	37	19	1827759	1827759	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77412660	77412660	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50893063	50893063	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCG2	7857	broad.mit.edu	37	2	224463615	224463615	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115803361	115803361	+	Silent	SNP	C	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101060582	101060582	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47142967	47142967	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC35B3	51000	broad.mit.edu	37	6	8417152	8417152	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67290936	67290936	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMO	6608	broad.mit.edu	37	7	128852025	128852025	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20847178	20847178	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TINAGL1	64129	broad.mit.edu	37	1	32042883	32042883	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	53014035	53014035	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189586483	189586483	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769985	31769986	+	Missense_Mutation	DNP	AT	TA	TA	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	AT	AT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UEVLD	55293	broad.mit.edu	37	11	18600293	18600293	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34802014	34802014	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191558	10191558	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS45	11311	broad.mit.edu	37	1	150049228	150049228	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813670	106813670	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF207	7756	broad.mit.edu	37	17	30692370	30692370	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF747	65988	broad.mit.edu	37	16	30545836	30545836	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZRANB1	54764	broad.mit.edu	37	10	126670374	126670374	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5178-01	TCGA-BP-5178-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
