Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAMTSL5	339366	broad.mit.edu	37	19	1508092	1508092	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANO8	57719	broad.mit.edu	37	19	17439020	17439020	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AP3S2	10239	broad.mit.edu	37	15	90431758	90431758	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46123828	46123828	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C17orf103	256302	broad.mit.edu	37	17	21146678	21146678	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C2orf44	80304	broad.mit.edu	37	2	24261024	24261024	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2711091	2711091	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CASP10	843	broad.mit.edu	37	2	202050621	202050621	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLIC6	54102	broad.mit.edu	37	21	36081739	36081739	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225710302	225710302	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOK7	285489	broad.mit.edu	37	4	3494670	3494671	+	Frame_Shift_Ins	INS	-	A	A	rs116963607	by1000genomes	TCGA-BP-5180-01	TCGA-BP-5180-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF2S2	8894	broad.mit.edu	37	20	32699916	32699917	+	Translation_Start_Site	DNP	TG	AT	AT	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134910562	134910562	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46628008	46628008	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IPO4	79711	broad.mit.edu	37	14	24655987	24655987	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IPP	3652	broad.mit.edu	37	1	46184982	46184983	+	Missense_Mutation	DNP	GT	CA	CA	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF2A	3796	broad.mit.edu	37	5	61677018	61677018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651199	1651228	+	In_Frame_Del	DEL	AGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	-	-	rs35089393;rs71025763;rs71454096	by1000genomes	TCGA-BP-5180-01	TCGA-BP-5180-01	AGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	AGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15561671	15561671	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17306197	17306197	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101720338	101720338	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCOA4	8031	broad.mit.edu	37	10	51582253	51582253	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NIPAL3	57185	broad.mit.edu	37	1	24766690	24766690	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OSBP2	23762	broad.mit.edu	37	22	31266569	31266569	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52637711	52637711	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140255906	140255906	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHRF1	57661	broad.mit.edu	37	11	608267	608267	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP2R5C	5527	broad.mit.edu	37	14	102348545	102348545	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRH1	5554	broad.mit.edu	37	12	11035696	11035696	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48794597	48794597	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAB32	10981	broad.mit.edu	37	6	146875689	146875689	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79356851	79356851	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77666705	77666705	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166870294	166870294	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70533276	70533276	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51135742	51135742	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLE6	79816	broad.mit.edu	37	19	2987728	2987728	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM8	81603	broad.mit.edu	37	10	104404879	104404879	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100433380	100433380	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183747	10183748	+	Nonsense_Mutation	DNP	CC	AT	AT	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77775496	77775496	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF77	58492	broad.mit.edu	37	19	2933730	2933730	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5180-01	TCGA-BP-5180-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
