Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABI2	10152	broad.mit.edu	37	2	204281636	204281636	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACTR3B	57180	broad.mit.edu	37	7	152513619	152513619	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARF1	375	broad.mit.edu	37	1	228285075	228285075	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C9orf114	51490	broad.mit.edu	37	9	131587330	131587330	+	Splice_Site	DEL	T	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAB39	51719	broad.mit.edu	37	2	231682474	231682474	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17690279	17690279	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50833615	50833615	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLDN10	9071	broad.mit.edu	37	13	96086287	96086287	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNKSR1	10256	broad.mit.edu	37	1	26514973	26514973	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113650949	113650949	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113841930	113841930	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTSB	1508	broad.mit.edu	37	8	11710155	11710155	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CXCR7	57007	broad.mit.edu	37	2	237489349	237489349	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25167945	25167945	+	Silent	SNP	C	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DSCR6	53820	broad.mit.edu	37	21	38385914	38385914	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM83A	84985	broad.mit.edu	37	8	124204063	124204063	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14748627	14748627	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20331781	20331781	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HNRNPA1	3178	broad.mit.edu	37	12	54676248	54676248	+	Silent	SNP	T	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HOXD11	3237	broad.mit.edu	37	2	176972132	176972132	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37821430	37821442	+	Frame_Shift_Del	DEL	ACTGTAACTTTAG	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	ACTGTAACTTTAG	ACTGTAACTTTAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35254745	35254745	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602352	10602352	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRBA2	124751	broad.mit.edu	37	17	8273274	8273274	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68181463	68181474	+	In_Frame_Del	DEL	GCAGCCGCAACT	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	GCAGCCGCAACT	GCAGCCGCAACT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6302771	6302771	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46268421	46268421	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEK3	4752	broad.mit.edu	37	13	52709999	52709999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NFKBIL2	4796	broad.mit.edu	37	8	145661644	145661644	+	Silent	SNP	T	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162324977	162324977	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52651382	52651383	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7416113	7416113	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7416181	7416181	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP1R2	5504	broad.mit.edu	37	3	195245886	195245886	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43376181	43376181	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RABGGTB	5876	broad.mit.edu	37	1	76254935	76254935	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130841087	130841087	+	Silent	SNP	T	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213349818	213349818	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEPT3	55964	broad.mit.edu	37	22	42383654	42383654	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235949909	235949910	+	Frame_Shift_Del	DEL	CA	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49797187	49797187	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STX8	9482	broad.mit.edu	37	17	9153958	9153958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYF2	25949	broad.mit.edu	37	1	25549846	25549846	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCF7	6932	broad.mit.edu	37	5	133451702	133451702	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMX3	54495	broad.mit.edu	37	18	66348333	66348333	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186302399	186302399	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42232448	42232448	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74392558	74392558	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188248	10188248	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VWA2	340706	broad.mit.edu	37	10	116038497	116038497	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
XPO1	7514	broad.mit.edu	37	2	61709537	61709537	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFR2	23217	broad.mit.edu	37	19	3813939	3813939	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFR2	23217	broad.mit.edu	37	19	3813948	3813948	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22270900	22270900	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF266	10781	broad.mit.edu	37	19	9525150	9525150	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37428114	37428114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5183-01	TCGA-BP-5183-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
