Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANK3	288	broad.mit.edu	37	10	61830794	61830794	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74005971	74005971	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASB16	92591	broad.mit.edu	37	17	42249555	42249555	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	56994801	56994801	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BICD2	23299	broad.mit.edu	37	9	95491475	95491475	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAMSAP1	157922	broad.mit.edu	37	9	138713812	138713812	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137665253	137665253	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107849993	107849993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3566004	3566004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113347652	113347652	+	Silent	SNP	G	T	T	rs113449703	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61070127	61070127	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DISP2	85455	broad.mit.edu	37	15	40660395	40660395	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186299170	186299170	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DUSP19	142679	broad.mit.edu	37	2	183960371	183960371	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126411497	126411497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57429540	57429540	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR26	2849	broad.mit.edu	37	10	125426346	125426346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HLA-DRA	3122	broad.mit.edu	37	6	32410977	32410978	+	Frame_Shift_Del	DEL	CT	-	-	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HMHA1	23526	broad.mit.edu	37	19	1073241	1073241	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGB5	3693	broad.mit.edu	37	3	124487961	124487961	+	Splice_Site	SNP	C	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73480522	73480522	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112319724	112319724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55979581	55979581	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	20998503	20998504	+	Missense_Mutation	DNP	AC	GT	GT	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLC1	3831	broad.mit.edu	37	14	104123884	104123884	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC24	441381	broad.mit.edu	37	8	145748563	145748563	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC50	123872	broad.mit.edu	37	16	84211446	84211446	+	Nonstop_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAGT1	84061	broad.mit.edu	37	X	77096799	77096799	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRPL14	64928	broad.mit.edu	37	6	44081767	44081767	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	823128	823128	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3089566	3089566	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPR2	4882	broad.mit.edu	37	9	35808676	35808678	+	In_Frame_Del	DEL	TAC	-	-	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	TAC	TAC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140255065	140255065	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHACTR1	221692	broad.mit.edu	37	6	13283726	13283726	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204230552	204230552	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149216300	149216300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68882677	68882677	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRSS50	29122	broad.mit.edu	37	3	46754550	46754550	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSD2	84249	broad.mit.edu	37	5	139193067	139193067	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48152101	48152101	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136402959	136402959	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RACGAP1	29127	broad.mit.edu	37	12	50384068	50384068	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RCE1	9986	broad.mit.edu	37	11	66612345	66612345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39308288	39308289	+	Missense_Mutation	DNP	CC	AA	AA	rs1135544	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPA2	6118	broad.mit.edu	37	1	28220534	28220534	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RUNX3	864	broad.mit.edu	37	1	25256188	25256188	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50341293	50341293	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228883287	228883287	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STXBP1	6812	broad.mit.edu	37	9	130413898	130413898	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TECTB	6975	broad.mit.edu	37	10	114046095	114046095	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM81	388730	broad.mit.edu	37	1	205053016	205053016	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMPRSS9	360200	broad.mit.edu	37	19	2418067	2418067	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TUBGCP2	10844	broad.mit.edu	37	10	135106185	135106185	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191508	10191511	+	Frame_Shift_Del	DEL	GAGC	-	-	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	GAGC	GAGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF280D	54816	broad.mit.edu	37	15	56993407	56993407	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5192-01	TCGA-BP-5192-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
