Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA8	10351	hgsc.bcm.edu	37	17	66924117	66924117	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ACADS	35	hgsc.bcm.edu	37	12	121176678	121176678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ACTR2	10097	hgsc.bcm.edu	37	2	65488448	65488448	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AMHR2	269	hgsc.bcm.edu	37	12	53818668	53818668	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AQP7	364	hgsc.bcm.edu	37	9	33385863	33385863	+	Missense_Mutation	SNP	G	G	T	rs62542746	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BCL7A	605	hgsc.bcm.edu	37	12	122481799	122481799	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BCOR	54880	hgsc.bcm.edu	37	X	39921479	39921479	+	Silent	SNP	G	G	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C2orf71	388939	hgsc.bcm.edu	37	2	29295855	29295855	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CABIN1	23523	hgsc.bcm.edu	37	22	24491950	24491950	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CAMSAP1	157922	hgsc.bcm.edu	37	9	138713412	138713412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC42	146849	hgsc.bcm.edu	37	17	8647475	8647475	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCNG2	901	hgsc.bcm.edu	37	4	78085544	78085544	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCNH	902	hgsc.bcm.edu	37	5	86695281	86695281	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD6	923	hgsc.bcm.edu	37	11	60785278	60785278	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CELF5	60680	hgsc.bcm.edu	37	19	3293438	3293438	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CMKLR1	1240	hgsc.bcm.edu	37	12	108686307	108686307	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL13A1	1305	hgsc.bcm.edu	37	10	71692318	71692318	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL15A1	1306	hgsc.bcm.edu	37	9	101817583	101817583	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DCAF5	8816	hgsc.bcm.edu	37	14	69520975	69520975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DCLK1	9201	hgsc.bcm.edu	37	13	36521538	36521538	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DGKH	160851	hgsc.bcm.edu	37	13	42740809	42740809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DOCK6	57572	hgsc.bcm.edu	37	19	11311438	11311438	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DSCR6	53820	hgsc.bcm.edu	37	21	38390298	38390298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DTHD1	401124	hgsc.bcm.edu	37	4	36345346	36345346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DYNC1H1	1778	hgsc.bcm.edu	37	14	102510612	102510612	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ERVFRDE1	405754	hgsc.bcm.edu	37	6	11104942	11104942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FGFR2	2263	hgsc.bcm.edu	37	10	123274743	123274743	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FLG	2312	hgsc.bcm.edu	37	1	152277657	152277657	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FMR1NB	158521	hgsc.bcm.edu	37	X	147088242	147088242	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FPR3	2359	hgsc.bcm.edu	37	19	52327023	52327023	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GGNBP2	79893	hgsc.bcm.edu	37	17	34943427	34943427	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HIF1A	3091	hgsc.bcm.edu	37	14	62200986	62200986	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HKR1	284459	hgsc.bcm.edu	37	19	37853658	37853658	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IQGAP2	10788	hgsc.bcm.edu	37	5	75886273	75886273	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITIH4	3700	hgsc.bcm.edu	37	3	52858241	52858241	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JSRP1	126306	hgsc.bcm.edu	37	19	2252973	2252973	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCTD19	146212	hgsc.bcm.edu	37	16	67324887	67324887	+	Silent	SNP	G	G	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA0562	.	hgsc.bcm.edu	37	1	3765182	3765182	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLF9	687	hgsc.bcm.edu	37	9	73028059	73028059	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRT85	3891	hgsc.bcm.edu	37	12	52760791	52760791	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP5-3	387266	hgsc.bcm.edu	37	11	1629359	1629359	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643049	1643049	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
L3MBTL4	91133	hgsc.bcm.edu	37	18	6215828	6215828	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LMNA	4000	hgsc.bcm.edu	37	1	156105094	156105094	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LPCAT4	254531	hgsc.bcm.edu	37	15	34651395	34651395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRCH1	23143	hgsc.bcm.edu	37	13	47260086	47260086	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRRC1	55227	hgsc.bcm.edu	37	6	53787556	53787556	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAGI1	9223	hgsc.bcm.edu	37	3	65415803	65415805	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	ACA	ACA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MED4	29079	hgsc.bcm.edu	37	13	48669206	48669206	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195513779	195513779	+	Missense_Mutation	SNP	C	C	T	rs3103959	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NACAD	23148	hgsc.bcm.edu	37	7	45123925	45123925	+	Silent	SNP	C	C	T	rs61740886	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NAT8	9027	hgsc.bcm.edu	37	2	73868466	73868467	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NIF3L1	60491	hgsc.bcm.edu	37	2	201761932	201761932	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NRK	203447	hgsc.bcm.edu	37	X	105132300	105132300	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NUP214	8021	hgsc.bcm.edu	37	9	134072982	134072982	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OBSCN	84033	hgsc.bcm.edu	37	1	228528242	228528242	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52651513	52651513	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHB6	56130	hgsc.bcm.edu	37	5	140531176	140531176	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PGBD1	84547	hgsc.bcm.edu	37	6	28269985	28269985	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLEKHM1	9842	hgsc.bcm.edu	37	17	43552739	43552739	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PNO1	56902	hgsc.bcm.edu	37	2	68401898	68401898	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RYR2	6262	hgsc.bcm.edu	37	1	237806695	237806695	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD5	55209	hgsc.bcm.edu	37	3	9486834	9486834	+	Silent	SNP	A	A	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SIX4	51804	hgsc.bcm.edu	37	14	61190108	61190108	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC12A5	57468	hgsc.bcm.edu	37	20	44664476	44664476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC22A7	10864	hgsc.bcm.edu	37	6	43267765	43267765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC23A1	9963	hgsc.bcm.edu	37	5	138713670	138713670	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TDRD9	122402	hgsc.bcm.edu	37	14	104441754	104441754	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TEX15	56154	hgsc.bcm.edu	37	8	30702516	30702516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TGFB2	7042	hgsc.bcm.edu	37	1	218609363	218609363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TGFBR3	7049	hgsc.bcm.edu	37	1	92224272	92224272	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM129	92305	hgsc.bcm.edu	37	4	1719303	1719303	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TNKS2	80351	hgsc.bcm.edu	37	10	93590703	93590703	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TP53	7157	hgsc.bcm.edu	37	17	7579534	7579534	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRA2A	29896	hgsc.bcm.edu	37	7	23547080	23547080	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRPM7	54822	hgsc.bcm.edu	37	15	50940938	50940938	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP37	57695	hgsc.bcm.edu	37	2	219423354	219423354	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188248	10188248	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188296	10188297	+	Frame_Shift_Ins	INS	-	-	TTTT	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VPS18	57617	hgsc.bcm.edu	37	15	41188258	41188258	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WTAP	9589	hgsc.bcm.edu	37	6	160176079	160176079	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
YEATS2	55689	hgsc.bcm.edu	37	3	183490251	183490251	+	Silent	SNP	G	G	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF274	10782	hgsc.bcm.edu	37	19	58695360	58695360	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF521	25925	hgsc.bcm.edu	37	18	22806642	22806642	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF532	55205	hgsc.bcm.edu	37	18	56601783	56601783	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF827	152485	hgsc.bcm.edu	37	4	146824030	146824030	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
