Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSS1	84532	hgsc.bcm.edu	37	20	25038484	25038484	+	Silent	SNP	G	G	T	rs66817095	unknown	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ACTR10	55860	hgsc.bcm.edu	37	14	58701185	58701185	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANXA4	307	hgsc.bcm.edu	37	2	70008703	70008703	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP19	84986	hgsc.bcm.edu	37	10	99019161	99019161	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARID5B	84159	hgsc.bcm.edu	37	10	63845486	63845486	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BIRC2	329	hgsc.bcm.edu	37	11	102248743	102248743	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C20orf152	140894	hgsc.bcm.edu	37	20	34611538	34611538	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHD5	26038	hgsc.bcm.edu	37	1	6206741	6206741	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNTLN	54875	hgsc.bcm.edu	37	9	17394889	17394889	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL15A1	1306	hgsc.bcm.edu	37	9	101759361	101759361	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DCT	1638	hgsc.bcm.edu	37	13	95117927	95117927	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHX34	9704	hgsc.bcm.edu	37	19	47861187	47861187	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DIDO1	11083	hgsc.bcm.edu	37	20	61537212	61537212	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DUOX2	50506	hgsc.bcm.edu	37	15	45387206	45387206	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM111B	374393	hgsc.bcm.edu	37	11	58877131	58877131	+	Silent	SNP	A	A	C	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXO21	23014	hgsc.bcm.edu	37	12	117627030	117627030	+	Splice_Site	SNP	A	A	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FN3KRP	79672	hgsc.bcm.edu	37	17	80680693	80680693	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPRIN2	9721	hgsc.bcm.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs72407136	unknown	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HERC3	8916	hgsc.bcm.edu	37	4	89583638	89583638	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNJ16	3773	hgsc.bcm.edu	37	17	68128601	68128601	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1324L	222223	hgsc.bcm.edu	37	7	86548618	86548618	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MT1X	4501	hgsc.bcm.edu	37	16	56717913	56717913	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYLK4	340156	hgsc.bcm.edu	37	6	2678597	2678597	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYPN	84665	hgsc.bcm.edu	37	10	69925513	69925513	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OVOL2	58495	hgsc.bcm.edu	37	20	18005499	18005499	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52713692	52713695	+	Frame_Shift_Del	DEL	GGAA	GGAA	-	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	GGAA	GGAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52713700	52713700	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCIF1	63935	hgsc.bcm.edu	37	20	44571762	44571762	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE4DIP	9659	hgsc.bcm.edu	37	1	144906421	144906421	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDS5A	23244	hgsc.bcm.edu	37	4	39929780	39929780	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIK3CG	5294	hgsc.bcm.edu	37	7	106508058	106508058	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPIH	10465	hgsc.bcm.edu	37	1	43124123	43124123	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAB3B	5865	hgsc.bcm.edu	37	1	52385647	52385647	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RGS17	26575	hgsc.bcm.edu	37	6	153345485	153345485	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC9A4	389015	hgsc.bcm.edu	37	2	103148953	103148953	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TARS2	80222	hgsc.bcm.edu	37	1	150460370	150460370	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10191531	10191531	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
