Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACIN1	22985	hgsc.bcm.edu	37	14	23548787	23548788	+	In_Frame_Ins	INS	-	-	GTGAAT	rs5807202	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADAMTS20	80070	hgsc.bcm.edu	37	12	43824219	43824219	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANAPC5	51433	hgsc.bcm.edu	37	12	121756398	121756398	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112175356	112175356	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATG2B	55102	hgsc.bcm.edu	37	14	96789012	96789012	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP2A1	487	hgsc.bcm.edu	37	16	28913241	28913241	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C1orf163	65260	hgsc.bcm.edu	37	1	53158524	53158524	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD3EAP	10849	hgsc.bcm.edu	37	19	45912490	45912492	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	AAG	AAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDCA2	157313	hgsc.bcm.edu	37	8	25364809	25364809	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CNOT1	23019	hgsc.bcm.edu	37	16	58579273	58579273	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COG4	25839	hgsc.bcm.edu	37	16	70548368	70548368	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CPNE4	131034	hgsc.bcm.edu	37	3	131261485	131261485	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DSPP	1834	hgsc.bcm.edu	37	4	88536880	88536880	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EOMES	8320	hgsc.bcm.edu	37	3	27760303	27760303	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FMNL1	752	hgsc.bcm.edu	37	17	43323619	43323619	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GFM2	84340	hgsc.bcm.edu	37	5	74021847	74021852	+	In_Frame_Del	DEL	ACTCAA	ACTCAA	-	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	ACTCAA	ACTCAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GNAS	2778	hgsc.bcm.edu	37	20	57428889	57428889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HERC2	8924	hgsc.bcm.edu	37	15	28419619	28419619	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HHIPL2	79802	hgsc.bcm.edu	37	1	222705449	222705449	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HOXD3	3232	hgsc.bcm.edu	37	2	177033941	177033941	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
INPP1	3628	hgsc.bcm.edu	37	2	191233923	191233923	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
INSC	387755	hgsc.bcm.edu	37	11	15222420	15222420	+	Silent	SNP	G	G	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ISY1	57461	hgsc.bcm.edu	37	3	128848936	128848936	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JMJD7-PLA2G4B	8681	hgsc.bcm.edu	37	15	42128715	42128715	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNJ12	3768	hgsc.bcm.edu	37	17	21319311	21319311	+	Silent	SNP	C	C	T	rs72846668	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNN2	3781	hgsc.bcm.edu	37	5	113808789	113808789	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM4A	9682	hgsc.bcm.edu	37	1	44159696	44159696	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIDINS220	57498	hgsc.bcm.edu	37	2	8926463	8926463	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLHL31	401265	hgsc.bcm.edu	37	6	53516418	53516418	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254247	39254247	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LPHN1	22859	hgsc.bcm.edu	37	19	14268697	14268697	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAML2	84441	hgsc.bcm.edu	37	11	95825206	95825206	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAP2K4	6416	hgsc.bcm.edu	37	17	11984784	11984784	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLL3	58508	hgsc.bcm.edu	37	7	151932908	151932908	+	Silent	SNP	T	T	C	rs112326730	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MMP25	64386	hgsc.bcm.edu	37	16	3100414	3100414	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MMP28	79148	hgsc.bcm.edu	37	17	34100350	34100350	+	Silent	SNP	G	G	C	rs58543174	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MPHOSPH6	10200	hgsc.bcm.edu	37	16	82203742	82203742	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MTOR	2475	hgsc.bcm.edu	37	1	11188078	11188078	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC16	94025	hgsc.bcm.edu	37	19	9089241	9089241	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195513540	195513540	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195518112	195518113	+	In_Frame_Ins	INS	-	-	GTCTCCTGCGTAACA	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NCOR1	9611	hgsc.bcm.edu	37	17	16068340	16068340	+	Missense_Mutation	SNP	C	C	T	rs76780359	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NKAIN3	286183	hgsc.bcm.edu	37	8	63902748	63902748	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR4C45	403257	hgsc.bcm.edu	37	11	48367469	48367469	+	Missense_Mutation	SNP	T	T	C	rs79686513	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR51B5	282763	hgsc.bcm.edu	37	11	5364542	5364558	+	Frame_Shift_Del	DEL	CAGCCCCAGGTCTGTGG	CAGCCCCAGGTCTGTGG	-	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	CAGCCCCAGGTCTGTGG	CAGCCCCAGGTCTGTGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52702662	52702662	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHA6	56142	hgsc.bcm.edu	37	5	140209499	140209499	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDZRN3	23024	hgsc.bcm.edu	37	3	73432856	73432856	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLD1	5337	hgsc.bcm.edu	37	3	171404519	171404519	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLIN4	729359	hgsc.bcm.edu	37	19	4512889	4512889	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLIN4	729359	hgsc.bcm.edu	37	19	4512945	4512945	+	Missense_Mutation	SNP	C	C	T	rs75031432	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLIN4	729359	hgsc.bcm.edu	37	19	4512946	4512946	+	Silent	SNP	A	A	G	rs79662071	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRSS41	360226	hgsc.bcm.edu	37	16	2849526	2849526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTCHD3	374308	hgsc.bcm.edu	37	10	27702370	27702370	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PUM2	23369	hgsc.bcm.edu	37	2	20451396	20451396	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PYROXD1	79912	hgsc.bcm.edu	37	12	21621622	21621622	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBM44	375316	hgsc.bcm.edu	37	2	238733023	238733023	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RNF145	153830	hgsc.bcm.edu	37	5	158630641	158630641	+	Silent	SNP	C	C	T	rs74841177	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SBSN	374897	hgsc.bcm.edu	37	19	36018434	36018434	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC26A4	5172	hgsc.bcm.edu	37	7	107329537	107329537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC7A5	8140	hgsc.bcm.edu	37	16	87885388	87885388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMC3	9126	hgsc.bcm.edu	37	10	112343657	112343657	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRRM1	10250	hgsc.bcm.edu	37	1	24993365	24993365	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYNE2	23224	hgsc.bcm.edu	37	14	64408465	64408465	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYNJ1	8867	hgsc.bcm.edu	37	21	34003928	34003929	+	In_Frame_Ins	INS	-	-	AGTATT	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCEAL3	85012	hgsc.bcm.edu	37	X	102864334	102864334	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCP11	6954	hgsc.bcm.edu	37	6	35086049	35086049	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM41A	90407	hgsc.bcm.edu	37	3	185212513	185212513	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179449638	179449638	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBR4	23352	hgsc.bcm.edu	37	1	19407977	19407977	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10191485	10191485	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
