Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	hgsc.bcm.edu	37	10	52569667	52569667	+	Silent	SNP	A	A	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ABLIM1	3983	hgsc.bcm.edu	37	10	116227940	116227940	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AKAP6	9472	hgsc.bcm.edu	37	14	33291825	33291825	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKRD50	57182	hgsc.bcm.edu	37	4	125590305	125590305	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
APLP1	333	hgsc.bcm.edu	37	19	36370071	36370071	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP1A1	476	hgsc.bcm.edu	37	1	116943758	116943758	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C14orf115	55237	hgsc.bcm.edu	37	14	74825562	74825562	+	Silent	SNP	C	C	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C16orf70	80262	hgsc.bcm.edu	37	16	67179492	67179492	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C2orf16	84226	hgsc.bcm.edu	37	2	27801317	27801317	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C4orf17	84103	hgsc.bcm.edu	37	4	100443784	100443784	+	Silent	SNP	C	C	G	rs61732380	unknown	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C6orf204	387119	hgsc.bcm.edu	37	6	118801654	118801654	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C7orf71	285941	hgsc.bcm.edu	37	7	26678853	26678853	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CABIN1	23523	hgsc.bcm.edu	37	22	24567705	24567705	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH26	60437	hgsc.bcm.edu	37	20	58558000	58558000	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CEACAM4	1089	hgsc.bcm.edu	37	19	42132312	42132312	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLCN6	1185	hgsc.bcm.edu	37	1	11896157	11896157	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLN5	1203	hgsc.bcm.edu	37	13	77574785	77574785	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNST	163882	hgsc.bcm.edu	37	1	246810937	246810938	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL19A1	1310	hgsc.bcm.edu	37	6	70639451	70639451	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDX25	29118	hgsc.bcm.edu	37	11	125791252	125791252	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DLG5	9231	hgsc.bcm.edu	37	10	79556277	79556277	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DMKN	93099	hgsc.bcm.edu	37	19	36002673	36002673	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DUSP27	92235	hgsc.bcm.edu	37	1	167097707	167097707	+	Silent	SNP	A	A	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ELFN2	114794	hgsc.bcm.edu	37	22	37769178	37769178	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ENOX1	55068	hgsc.bcm.edu	37	13	43934148	43934148	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ENTPD8	377841	hgsc.bcm.edu	37	9	140330189	140330189	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ESPNL	339768	hgsc.bcm.edu	37	2	239033943	239033943	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM136A	84908	hgsc.bcm.edu	37	2	70529055	70529055	+	Splice_Site	SNP	A	A	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM20B	9917	hgsc.bcm.edu	37	1	179013267	179013267	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FDPS	2224	hgsc.bcm.edu	37	1	155289628	155289628	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
G3BP2	9908	hgsc.bcm.edu	37	4	76579235	76579235	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GANC	2595	hgsc.bcm.edu	37	15	42585003	42585003	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GIGYF2	26058	hgsc.bcm.edu	37	2	233680350	233680350	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GLB1L3	112937	hgsc.bcm.edu	37	11	134147736	134147736	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR98	84059	hgsc.bcm.edu	37	5	89923473	89923473	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HK1	3098	hgsc.bcm.edu	37	10	71139760	71139760	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HK1	3098	hgsc.bcm.edu	37	10	71144134	71144134	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IFT52	51098	hgsc.bcm.edu	37	20	42242573	42242573	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IFT52	51098	hgsc.bcm.edu	37	20	42242577	42242577	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ILK	3611	hgsc.bcm.edu	37	11	6631379	6631379	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITGAV	3685	hgsc.bcm.edu	37	2	187521116	187521116	+	Silent	SNP	A	A	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCTD1	284252	hgsc.bcm.edu	37	18	24127779	24127779	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0564	23078	hgsc.bcm.edu	37	13	42461384	42461384	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LHX8	431707	hgsc.bcm.edu	37	1	75608988	75608988	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRP2	4036	hgsc.bcm.edu	37	2	170115607	170115607	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC70	100130733	hgsc.bcm.edu	37	5	61877084	61877084	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LYPD4	147719	hgsc.bcm.edu	37	19	42341417	42341417	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MCF2L2	23101	hgsc.bcm.edu	37	3	182923678	182923678	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MDN1	23195	hgsc.bcm.edu	37	6	90499925	90499925	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MED12L	116931	hgsc.bcm.edu	37	3	150903129	150903129	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MGA	23269	hgsc.bcm.edu	37	15	41988561	41988561	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MIOS	54468	hgsc.bcm.edu	37	7	7612146	7612146	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MS4A15	219995	hgsc.bcm.edu	37	11	60531258	60531258	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYST4	23522	hgsc.bcm.edu	37	10	76781908	76781908	+	Silent	SNP	A	A	G	rs79644703	unknown	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OPN1SW	611	hgsc.bcm.edu	37	7	128415817	128415817	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52598178	52598179	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHF20	51230	hgsc.bcm.edu	37	20	34458954	34458954	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPA2	27068	hgsc.bcm.edu	37	4	106370542	106370542	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP1R15B	84919	hgsc.bcm.edu	37	1	204379755	204379755	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKCQ	5588	hgsc.bcm.edu	37	10	6525533	6525533	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKDC	5591	hgsc.bcm.edu	37	8	48769759	48769759	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTCH2	8643	hgsc.bcm.edu	37	1	45292921	45292921	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RASGRP4	115727	hgsc.bcm.edu	37	19	38904103	38904103	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBM16	22828	hgsc.bcm.edu	37	6	155145481	155145481	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBM23	55147	hgsc.bcm.edu	37	14	23371268	23371268	+	Silent	SNP	A	A	G	rs66471914	unknown	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC6A16	28968	hgsc.bcm.edu	37	19	49793633	49793633	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMU1	55234	hgsc.bcm.edu	37	9	33073680	33073680	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPTBN2	6712	hgsc.bcm.edu	37	11	66466957	66466957	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPTBN2	6712	hgsc.bcm.edu	37	11	66483325	66483325	+	Silent	SNP	G	G	A	rs34117933	unknown	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SRP72	6731	hgsc.bcm.edu	37	4	57366826	57366826	+	Silent	SNP	G	G	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SRPK2	6733	hgsc.bcm.edu	37	7	104783695	104783695	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYCP3	50511	hgsc.bcm.edu	37	12	102125403	102125403	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMC2	117532	hgsc.bcm.edu	37	20	2577832	2577832	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM74	157753	hgsc.bcm.edu	37	8	109796776	109796776	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TSPAN9	10867	hgsc.bcm.edu	37	12	3388212	3388212	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTC21B	79809	hgsc.bcm.edu	37	2	166788344	166788344	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UBE2O	63893	hgsc.bcm.edu	37	17	74398736	74398736	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP9X	8239	hgsc.bcm.edu	37	X	41025293	41025293	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10188235	10188236	+	Frame_Shift_Ins	INS	-	-	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VPS13B	157680	hgsc.bcm.edu	37	8	100514007	100514007	+	Silent	SNP	T	T	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VPS13C	54832	hgsc.bcm.edu	37	15	62173973	62173973	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDFY4	57705	hgsc.bcm.edu	37	10	49983817	49983817	+	Silent	SNP	A	A	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR17	116966	hgsc.bcm.edu	37	4	177094493	177094493	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF187	7741	hgsc.bcm.edu	37	6	28239931	28239932	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF195	7748	hgsc.bcm.edu	37	11	3380733	3380733	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF699	374879	hgsc.bcm.edu	37	19	9407410	9407410	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF763	284390	hgsc.bcm.edu	37	19	12089194	12089194	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
