Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCC4	10257	broad.mit.edu	37	13	95862961	95862961	+	Silent	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100232771	100232771	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54403670	54403670	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	100206021	100206021	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP6V1A	523	broad.mit.edu	37	3	113499964	113499964	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113540750	113540750	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C4orf36	132989	broad.mit.edu	37	4	87808950	87808950	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71024217	71024217	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C9orf5	23731	broad.mit.edu	37	9	111800395	111800395	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85961624	85961624	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAMKK1	84254	broad.mit.edu	37	17	3786739	3786739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	116999978	116999978	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113301593	113301593	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTAGE1	64693	broad.mit.edu	37	18	19996969	19996969	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTR9	9646	broad.mit.edu	37	11	10785191	10785191	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTSB	1508	broad.mit.edu	37	8	11710851	11710851	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111517174	111517174	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5410602	5410602	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23191471	23191471	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ESM1	11082	broad.mit.edu	37	5	54277917	54277917	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ETNK1	55500	broad.mit.edu	37	12	22778110	22778110	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM83A	84985	broad.mit.edu	37	8	124204198	124204198	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FARSA	2193	broad.mit.edu	37	19	13041068	13041068	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GDF10	2662	broad.mit.edu	37	10	48429220	48429220	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GEMIN8	54960	broad.mit.edu	37	X	14038611	14038611	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR171	29909	broad.mit.edu	37	3	150917067	150917067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HNRNPK	3190	broad.mit.edu	37	9	86586212	86586212	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IMPA2	3613	broad.mit.edu	37	18	11999109	11999109	+	Silent	SNP	A	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26417412	26417412	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33334716	33334716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30067836	30067836	+	Nonsense_Mutation	SNP	C	T	T	rs74315499	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66189623	66189623	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50779973	50779973	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4K14	122740	broad.mit.edu	37	14	20483200	20483200	+	Silent	SNP	A	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR51B4	79339	broad.mit.edu	37	11	5323105	5323105	+	Silent	SNP	C	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
P2RY2	5029	broad.mit.edu	37	11	72945224	72945224	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140564017	140564017	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLEKHG4	25894	broad.mit.edu	37	16	67322104	67322104	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRR12	57479	broad.mit.edu	37	19	50099582	50099582	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSMD2	5708	broad.mit.edu	37	3	184019697	184019697	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160275160	160275160	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RGS11	8786	broad.mit.edu	37	16	321411	321411	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167184993	167184993	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SOX2	6657	broad.mit.edu	37	3	181430951	181430951	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPATA20	64847	broad.mit.edu	37	17	48629019	48629019	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16203144	16203144	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2312728	2312728	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35698342	35698342	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38097437	38097437	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142509938	142509938	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSPAN19	144448	broad.mit.edu	37	12	85421761	85421761	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179436709	179436709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85564293	85564293	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF226	7769	broad.mit.edu	37	19	44680770	44680770	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF415	55786	broad.mit.edu	37	19	53612395	53612395	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF594	84622	broad.mit.edu	37	17	5086795	5086795	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF800	168850	broad.mit.edu	37	7	127014965	127014965	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4901-01	TCGA-CJ-4901-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
