Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABI1	10006	broad.mit.edu	37	10	27054165	27054165	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33293956	33293956	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46563577	46563577	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	67934791	67934794	+	Frame_Shift_Del	DEL	AAAG	-	-	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	AAAG	AAAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117876122	117876122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47591319	47591319	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76855280	76855280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83933213	83933213	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1QTNF9	338872	broad.mit.edu	37	13	24893010	24893010	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19612594	19612594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25043508	25043508	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYC1	1537	broad.mit.edu	37	8	145151520	145151520	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYP46A1	10858	broad.mit.edu	37	14	100191787	100191787	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
D4S234E	27065	broad.mit.edu	37	4	4411393	4411393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31086042	31086042	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EDC3	80153	broad.mit.edu	37	15	74925269	74925269	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	160969694	160969694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6233079	6233079	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92257814	92257814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42049239	42049239	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IMPDH2	3615	broad.mit.edu	37	3	49062375	49062375	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150675001	150675001	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142649604	142649604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLHL32	114792	broad.mit.edu	37	6	97562309	97562309	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMP3	27074	broad.mit.edu	37	3	182871518	182871518	+	Silent	SNP	A	G	G	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71495395	71495395	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MFSD6L	162387	broad.mit.edu	37	17	8702126	8702126	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129906582	129906582	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MKNK2	2872	broad.mit.edu	37	19	2043146	2043146	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19735259	19735259	+	Silent	SNP	C	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84744979	84744979	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79434650	79434650	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR1G1	8390	broad.mit.edu	37	17	3030489	3030489	+	Silent	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4D1	26689	broad.mit.edu	37	17	56233390	56233390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
P2RX1	5023	broad.mit.edu	37	17	3819428	3819428	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52643360	52643360	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233150461	233150461	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCSK1	5122	broad.mit.edu	37	5	95728885	95728885	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLEKHH3	79990	broad.mit.edu	37	17	40820279	40820279	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132192713	132192713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLG2	11232	broad.mit.edu	37	17	62481972	62481972	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP2R4	5524	broad.mit.edu	37	9	131909727	131909727	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPGEF3	10411	broad.mit.edu	37	12	48151827	48151830	+	Frame_Shift_Del	DEL	CCCA	-	-	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	CCCA	CCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173894949	173894949	+	Silent	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPH1	65059	broad.mit.edu	37	2	204305222	204305222	+	Silent	SNP	T	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBM45	129831	broad.mit.edu	37	2	178990777	178990777	+	Silent	SNP	C	G	G	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92733297	92733297	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1217053	1217053	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMARCA5	8467	broad.mit.edu	37	4	144465930	144465930	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLR2	7097	broad.mit.edu	37	4	154625344	154625344	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRAPPC2	6399	broad.mit.edu	37	X	13738010	13738010	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773890	229773890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188309	10188309	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62257054	62257055	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS25	84313	broad.mit.edu	37	17	40925522	40925522	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR48	57599	broad.mit.edu	37	3	39108073	39108073	+	Silent	SNP	A	T	T	novel	unknown	TCGA-CJ-4903-01	TCGA-CJ-4903-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
