Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA6	23460	hgsc.bcm.edu	37	17	67124896	67124896	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112178912	112178912	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APOBEC3B	9582	hgsc.bcm.edu	37	22	39380188	39380188	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AVIL	10677	hgsc.bcm.edu	37	12	58201174	58201174	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BLVRA	644	hgsc.bcm.edu	37	7	43846618	43846618	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C4orf47	441054	hgsc.bcm.edu	37	4	186366125	186366125	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CABIN1	23523	hgsc.bcm.edu	37	22	24456572	24456572	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CAPS2	84698	hgsc.bcm.edu	37	12	75676116	75676116	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CAV3	859	hgsc.bcm.edu	37	3	8787538	8787538	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC158	339965	hgsc.bcm.edu	37	4	77292666	77292666	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC63	160762	hgsc.bcm.edu	37	12	111291340	111291340	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDC20	991	hgsc.bcm.edu	37	1	43825663	43825663	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DDX24	57062	hgsc.bcm.edu	37	14	94519372	94519372	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DIS3	22894	hgsc.bcm.edu	37	13	73347935	73347935	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNM1L	10059	hgsc.bcm.edu	37	12	32886681	32886681	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DOCK2	1794	hgsc.bcm.edu	37	5	169474616	169474616	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FER	2241	hgsc.bcm.edu	37	5	108134052	108134052	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GML	2765	hgsc.bcm.edu	37	8	143922589	143922589	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITGA7	3679	hgsc.bcm.edu	37	12	56096858	56096858	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM3B	51780	hgsc.bcm.edu	37	5	137717222	137717222	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM5B	10765	hgsc.bcm.edu	37	1	202733213	202733213	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF14	9928	hgsc.bcm.edu	37	1	200587085	200587085	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRAS	3845	hgsc.bcm.edu	37	12	25380275	25380275	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MDN1	23195	hgsc.bcm.edu	37	6	90358035	90358035	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
METTL7B	196410	hgsc.bcm.edu	37	12	56076036	56076036	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MFSD5	84975	hgsc.bcm.edu	37	12	53647588	53647588	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MTR	4548	hgsc.bcm.edu	37	1	237037139	237037139	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYO3A	53904	hgsc.bcm.edu	37	10	26315321	26315321	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR11L1	391189	hgsc.bcm.edu	37	1	248004727	248004727	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR4C16	219428	hgsc.bcm.edu	37	11	55339859	55339859	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52643533	52643533	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHB1	29930	hgsc.bcm.edu	37	5	140432455	140432455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3R1	5295	hgsc.bcm.edu	37	5	67592086	67592086	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PKD1L1	168507	hgsc.bcm.edu	37	7	47840259	47840259	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRKACB	5567	hgsc.bcm.edu	37	1	84679863	84679863	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRTG	283659	hgsc.bcm.edu	37	15	55931919	55931919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RABGEF1	27342	hgsc.bcm.edu	37	7	66260561	66260561	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RB1	5925	hgsc.bcm.edu	37	13	48941659	48941659	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SAMD4A	23034	hgsc.bcm.edu	37	14	55203899	55203899	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC24A3	57419	hgsc.bcm.edu	37	20	19665938	19665938	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC25A14	9016	hgsc.bcm.edu	37	X	129483276	129483276	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMAD4	4089	hgsc.bcm.edu	37	18	48575149	48575149	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STAG2	10735	hgsc.bcm.edu	37	X	123195628	123195629	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM229A	730130	hgsc.bcm.edu	37	7	123672748	123672748	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TNFAIP3	7128	hgsc.bcm.edu	37	6	138201233	138201233	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPD52L2	7165	hgsc.bcm.edu	37	20	62507184	62507184	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBTF	7343	hgsc.bcm.edu	37	17	42295567	42295567	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UPF3B	65109	hgsc.bcm.edu	37	X	118971918	118971918	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
YWHAB	7529	hgsc.bcm.edu	37	20	43533772	43533772	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZBTB44	29068	hgsc.bcm.edu	37	11	130131008	130131008	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZFP112	7771	hgsc.bcm.edu	37	19	44840845	44840845	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF426	79088	hgsc.bcm.edu	37	19	9643586	9643586	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF609	23060	hgsc.bcm.edu	37	15	64967175	64967175	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZUFSP	221302	hgsc.bcm.edu	37	6	116981933	116981933	+	Silent	SNP	A	A	C	novel	unknown	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
