Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA12	26154	hgsc.bcm.edu	37	2	215838696	215838696	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ABCA4	24	hgsc.bcm.edu	37	1	94466632	94466632	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ABCA4	24	hgsc.bcm.edu	37	1	94568687	94568687	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ABHD12	26090	hgsc.bcm.edu	37	20	25282909	25282909	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ACSL1	2180	hgsc.bcm.edu	37	4	185694256	185694256	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADORA3	140	hgsc.bcm.edu	37	1	112031474	112031474	+	Silent	SNP	G	G	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD32	84250	hgsc.bcm.edu	37	5	93987546	93987546	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASB15	142685	hgsc.bcm.edu	37	7	123267202	123267202	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASCC3	10973	hgsc.bcm.edu	37	6	101248212	101248212	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRE	9577	hgsc.bcm.edu	37	2	28532988	28532988	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C4orf29	80167	hgsc.bcm.edu	37	4	128905506	128905506	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C8orf79	57604	hgsc.bcm.edu	37	8	12879542	12879542	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C9orf41	138199	hgsc.bcm.edu	37	9	77632363	77632363	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CASC5	57082	hgsc.bcm.edu	37	15	40949238	40949238	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC136	64753	hgsc.bcm.edu	37	7	128434749	128434749	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCNY	219771	hgsc.bcm.edu	37	10	35819094	35819094	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDC42BPA	8476	hgsc.bcm.edu	37	1	227288695	227288695	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDH7	1005	hgsc.bcm.edu	37	18	63530103	63530103	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDK13	8621	hgsc.bcm.edu	37	7	40134425	40134425	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CFHR3	10878	hgsc.bcm.edu	37	1	196762628	196762628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLCN7	1186	hgsc.bcm.edu	37	16	1515299	1515299	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLIP1	6249	hgsc.bcm.edu	37	12	122831951	122831951	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CNPY4	245812	hgsc.bcm.edu	37	7	99722440	99722440	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CNTNAP4	85445	hgsc.bcm.edu	37	16	76501348	76501348	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTAGE5	4253	hgsc.bcm.edu	37	14	39763224	39763224	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DENND4B	9909	hgsc.bcm.edu	37	1	153913052	153913052	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DIP2C	22982	hgsc.bcm.edu	37	10	409187	409187	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DOCK10	55619	hgsc.bcm.edu	37	2	225668898	225668898	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DPCR1	0	hgsc.bcm.edu	37	6	30916609	30916609	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DRD1	1812	hgsc.bcm.edu	37	5	174869226	174869226	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DSCAM	1826	hgsc.bcm.edu	37	21	41741148	41741148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ECT2	1894	hgsc.bcm.edu	37	3	172502507	172502507	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EIF2C2	27161	hgsc.bcm.edu	37	8	141559351	141559351	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EIF2C2	27161	hgsc.bcm.edu	37	8	141559352	141559352	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ENTHD1	150350	hgsc.bcm.edu	37	22	40283658	40283658	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EPHA3	2042	hgsc.bcm.edu	37	3	89468374	89468374	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM186A	121006	hgsc.bcm.edu	37	12	50745779	50745779	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FLAD1	80308	hgsc.bcm.edu	37	1	154960848	154960848	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GAB2	9846	hgsc.bcm.edu	37	11	77931466	77931466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GBA	2629	hgsc.bcm.edu	37	1	155205090	155205090	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GCC2	9648	hgsc.bcm.edu	37	2	109100625	109100625	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPR52	9293	hgsc.bcm.edu	37	1	174417777	174417777	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HEATR7B2	133558	hgsc.bcm.edu	37	5	41004528	41004528	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HERC2	8924	hgsc.bcm.edu	37	15	28431776	28431776	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HERC3	8916	hgsc.bcm.edu	37	4	89607937	89607937	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HGF	3082	hgsc.bcm.edu	37	7	81336662	81336662	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HLF	3131	hgsc.bcm.edu	37	17	53345220	53345220	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
INPP4A	3631	hgsc.bcm.edu	37	2	99155379	99155379	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM5B	10765	hgsc.bcm.edu	37	1	202725626	202725626	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA0174	9798	hgsc.bcm.edu	37	16	71951006	71951006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA1310	55683	hgsc.bcm.edu	37	2	97285435	97285435	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF2B	84643	hgsc.bcm.edu	37	17	51902168	51902168	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIN	22944	hgsc.bcm.edu	37	10	7829795	7829795	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLHL17	339451	hgsc.bcm.edu	37	1	900441	900441	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRT2	3849	hgsc.bcm.edu	37	12	53043743	53043743	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRRIQ1	84125	hgsc.bcm.edu	37	12	85466870	85466870	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LXN	56925	hgsc.bcm.edu	37	3	158387254	158387254	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAN2C1	4123	hgsc.bcm.edu	37	15	75648339	75648339	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MARCH10	162333	hgsc.bcm.edu	37	17	60814440	60814440	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MARCH10	162333	hgsc.bcm.edu	37	17	60814441	60814441	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MARS	4141	hgsc.bcm.edu	37	12	57881962	57881962	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MBD1	4152	hgsc.bcm.edu	37	18	47799227	47799227	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MPO	4353	hgsc.bcm.edu	37	17	56349016	56349016	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MRGPRX3	117195	hgsc.bcm.edu	37	11	18159570	18159570	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUTYH	4595	hgsc.bcm.edu	37	1	45796197	45796197	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MXRA5	25878	hgsc.bcm.edu	37	X	3235733	3235733	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NME2	4831	hgsc.bcm.edu	37	17	49245686	49245686	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NOL6	65083	hgsc.bcm.edu	37	9	33469655	33469655	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NRXN1	9378	hgsc.bcm.edu	37	2	50733648	50733648	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NTRK2	4915	hgsc.bcm.edu	37	9	87339201	87339201	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OLFM4	10562	hgsc.bcm.edu	37	13	53624868	53624868	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR1J2	26740	hgsc.bcm.edu	37	9	125273446	125273446	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR51T1	401665	hgsc.bcm.edu	37	11	4903098	4903098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCLO	27445	hgsc.bcm.edu	37	7	82595299	82595299	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PHF3	23469	hgsc.bcm.edu	37	6	64395089	64395089	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3CA	5290	hgsc.bcm.edu	37	3	178952046	178952046	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PSMC2	5701	hgsc.bcm.edu	37	7	103008447	103008447	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRQ	374462	hgsc.bcm.edu	37	12	80940449	80940449	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
QTRTD1	79691	hgsc.bcm.edu	37	3	113785087	113785087	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB26	25837	hgsc.bcm.edu	37	16	2200042	2200042	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBM27	54439	hgsc.bcm.edu	37	5	145643071	145643071	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
REV3L	5980	hgsc.bcm.edu	37	6	111694884	111694885	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RHBDF1	64285	hgsc.bcm.edu	37	16	109255	109255	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RNF213	57674	hgsc.bcm.edu	37	17	78321744	78321744	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RNF25	64320	hgsc.bcm.edu	37	2	219529592	219529592	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RNF26	79102	hgsc.bcm.edu	37	11	119205888	119205888	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPRD2	23248	hgsc.bcm.edu	37	1	150445629	150445629	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RWDD2B	10069	hgsc.bcm.edu	37	21	30380357	30380357	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCLT1	132320	hgsc.bcm.edu	37	4	129960215	129960215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SDK2	54549	hgsc.bcm.edu	37	17	71420174	71420174	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEC24A	10802	hgsc.bcm.edu	37	5	134002663	134002663	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SGPP1	81537	hgsc.bcm.edu	37	14	64152863	64152863	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRSF2IP	9169	hgsc.bcm.edu	37	12	46321850	46321850	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ST6GALNAC2	10610	hgsc.bcm.edu	37	17	74564850	74564850	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STAG2	10735	hgsc.bcm.edu	37	X	123184057	123184057	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYMPK	8189	hgsc.bcm.edu	37	19	46319803	46319803	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TLN2	83660	hgsc.bcm.edu	37	15	63092888	63092888	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMX4	56255	hgsc.bcm.edu	37	20	7963240	7963240	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TOE1	114034	hgsc.bcm.edu	37	1	45808092	45808092	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRAPPC8	22878	hgsc.bcm.edu	37	18	29410858	29410858	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRPC7	57113	hgsc.bcm.edu	37	5	135561036	135561036	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTC21A	199223	hgsc.bcm.edu	37	3	39179047	39179047	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TYRP1	7306	hgsc.bcm.edu	37	9	12708083	12708083	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBLCP1	134510	hgsc.bcm.edu	37	5	158697539	158697539	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBN2	254048	hgsc.bcm.edu	37	7	138958118	138958118	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBOX5	22888	hgsc.bcm.edu	37	20	3103217	3103217	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBR4	23352	hgsc.bcm.edu	37	1	19471346	19471346	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UGT1A8	54576	hgsc.bcm.edu	37	2	234526756	234526757	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VCAN	1462	hgsc.bcm.edu	37	5	82815673	82815673	+	Silent	SNP	T	T	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR65	149465	hgsc.bcm.edu	37	1	43649511	43649511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZBBX	79740	hgsc.bcm.edu	37	3	167000224	167000224	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZHX1	11244	hgsc.bcm.edu	37	8	124265779	124265779	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMYND17	118490	hgsc.bcm.edu	37	10	75185797	75185797	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF600	162966	hgsc.bcm.edu	37	19	53269727	53269727	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF600	162966	hgsc.bcm.edu	37	19	53269746	53269746	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF609	23060	hgsc.bcm.edu	37	15	64968215	64968215	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZPLD1	131368	hgsc.bcm.edu	37	3	102181210	102181210	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
