Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ALCAM	214	hgsc.bcm.edu	37	3	105266275	105266275	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKHD1	54882	hgsc.bcm.edu	37	5	139905891	139905891	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP11C	286410	hgsc.bcm.edu	37	X	138832228	138832228	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CACNA1I	8911	hgsc.bcm.edu	37	22	40062013	40062013	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC120	90060	hgsc.bcm.edu	37	X	48923285	48923285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDH17	1015	hgsc.bcm.edu	37	8	95172298	95172298	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHL1	10752	hgsc.bcm.edu	37	3	367660	367660	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLCN1	1180	hgsc.bcm.edu	37	7	143020428	143020428	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DAPK3	1613	hgsc.bcm.edu	37	19	3964350	3964350	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FRMPD4	9758	hgsc.bcm.edu	37	X	12701706	12701706	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FZD9	8326	hgsc.bcm.edu	37	7	72849270	72849270	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPRIN1	114787	hgsc.bcm.edu	37	5	176026124	176026147	+	In_Frame_Del	DEL	AAGACCCAGGATCCTCCTTCCTCG	AAGACCCAGGATCCTCCTTCCTCG	-	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	AAGACCCAGGATCCTCCTTCCTCG	AAGACCCAGGATCCTCCTTCCTCG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GZF1	64412	hgsc.bcm.edu	37	20	23350858	23350858	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HCFC2	29915	hgsc.bcm.edu	37	12	104487253	104487253	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HIVEP1	3096	hgsc.bcm.edu	37	6	12125187	12125187	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITGB1	3688	hgsc.bcm.edu	37	10	33199315	33199315	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JUN	3725	hgsc.bcm.edu	37	1	59248705	59248705	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNT2	343450	hgsc.bcm.edu	37	1	196254849	196254849	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF14	9928	hgsc.bcm.edu	37	1	200555334	200555334	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF1A	547	hgsc.bcm.edu	37	2	241686667	241686667	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LCP2	3937	hgsc.bcm.edu	37	5	169694070	169694070	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LTN1	26046	hgsc.bcm.edu	37	21	30358517	30358517	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAGEC1	9947	hgsc.bcm.edu	37	X	140993373	140993373	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MSR1	4481	hgsc.bcm.edu	37	8	16035394	16035394	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MTMR11	10903	hgsc.bcm.edu	37	1	149908474	149908474	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NBPF3	84224	hgsc.bcm.edu	37	1	21806619	21806619	+	Silent	SNP	T	T	C	rs3820294	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR6V1	346517	hgsc.bcm.edu	37	7	142749937	142749937	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52610659	52610659	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLEKHO2	80301	hgsc.bcm.edu	37	15	65157277	65157277	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRB4	5545	hgsc.bcm.edu	37	12	11461534	11461596	+	In_Frame_Del	DEL	CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT	CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT	-	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT	CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PSMA8	143471	hgsc.bcm.edu	37	18	23724528	23724528	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBM12	10137	hgsc.bcm.edu	37	20	34242048	34242048	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RNF144A	9781	hgsc.bcm.edu	37	2	7164573	7164573	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SAMD3	154075	hgsc.bcm.edu	37	6	130476162	130476162	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD2	29072	hgsc.bcm.edu	37	3	47163209	47163209	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC2A8	29988	hgsc.bcm.edu	37	9	130169437	130169437	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC5A6	8884	hgsc.bcm.edu	37	2	27426128	27426128	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRRAP	8295	hgsc.bcm.edu	37	7	98507681	98507681	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188200	10188200	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF655	79027	hgsc.bcm.edu	37	7	99169358	99169358	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
