| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LUSC.2012_06_06__00_00_18.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues7575298932831391036.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues2778009030999575598.tsv |
| GDAC_MergeDataFiles2 output filename | LUSC |
| GDAC_MergeDataFiles2 row_column | row |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg.seg |
| Execution Times: | |
| Submitted: | 23:41:56 13-06-12 |
| Completed: | |
| Elapsed: | 00 hrs 03 mins 08 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 112472] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LUSC.2012_06_06__00_00_18.samplestamp.txt |
| annotationid | cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg |
| sdrffilename | |
| datapathsfile | dependentsValues7575298932831391036.tsv |
| Output Files: | |
| dcc_archive.properties | |
| LUSC.merger.sdrf.txt | |
| .lsf.out | |
| dcc_archive_manifest.tsv | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 23:41:57 13-06-12 |
| Completed: | 23:42:27 13-06-12 |
| Elapsed: | 00 hrs 00 mins 29 secs |
step 2. GDAC_MergeDataFiles [id: 112473] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues2778009030999575598.tsv |
| output filename | LUSC |
| row_column | row |
| num_headers | 1 |
| filetype | cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg.seg |
| Output Files: | |
| LUSC.cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg.seg.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 23:41:57 13-06-12 |
| Completed: | 23:45:01 13-06-12 |
| Elapsed: | 00 hrs 03 mins 04 secs |