| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LUSC.2012_06_06__00_00_18.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues3509621921914921761.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues5805679455101004829.tsv |
| GDAC_MergeDataFiles2 output filename | LUSC |
| GDAC_MergeDataFiles2 row_column | column |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data.data |
| Execution Times: | |
| Submitted: | 23:42:25 13-06-12 |
| Completed: | |
| Elapsed: | 00 hrs 02 mins 53 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 112481] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LUSC.2012_06_06__00_00_18.samplestamp.txt |
| annotationid | exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data |
| sdrffilename | |
| datapathsfile | dependentsValues3509621921914921761.tsv |
| Output Files: | |
| LUSC.merger.sdrf.txt | |
| dcc_archive.properties | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 23:42:26 13-06-12 |
| Completed: | 23:43:00 13-06-12 |
| Elapsed: | 00 hrs 00 mins 34 secs |
step 2. GDAC_MergeDataFiles [id: 112482] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues5805679455101004829.tsv |
| output filename | LUSC |
| row_column | column |
| num_headers | 1 |
| filetype | exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data.data |
| Output Files: | |
| LUSC.exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data.data.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 23:42:26 13-06-12 |
| Completed: | 23:45:16 13-06-12 |
| Elapsed: | 00 hrs 02 mins 49 secs |