Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ECE1	1889	broad.mit.edu	36	1	21444134	21444134	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	21444134	21444134	ECE1	1	A	A	C	3
PTPRU	10076	broad.mit.edu	36	1	29504461	29504461	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	29504461	29504461	PTPRU	1	C	C	A	18
PODN	127435	broad.mit.edu	36	1	53312904	53312904	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	53312904	53312904	PODN	1	A	A	C	5
LPPR4	9890	broad.mit.edu	36	1	99544192	99544192	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	99544192	99544192	LPPR4	1	T	T	A	50
SHE	126669	broad.mit.edu	36	1	152728203	152728203	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	152728203	152728203	SHE	1	C	C	A	20
INSRR	3645	broad.mit.edu	36	1	155090390	155090390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	155090390	155090390	INSRR	1	C	C	G	17
SPTA1	6708	broad.mit.edu	36	1	156917982	156917982	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	156917982	156917982	SPTA1	1	C	C	G	17
AIM2	9447	broad.mit.edu	36	1	157302731	157302731	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	157302731	157302731	AIM2	1	G	G	T	48
HMCN1	83872	broad.mit.edu	36	1	184101573	184101573	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	184101573	184101573	HMCN1	1	A	A	C	5
CACNA1S	779	broad.mit.edu	36	1	199306144	199306144	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	199306144	199306144	CACNA1S	1	C	C	T	30
PFKFB3	5209	broad.mit.edu	36	10	6302685	6302685	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Nonsense_Mutation	SNP	6302685	6302685	PFKFB3	10	C	C	T	25
KRTAP5-3	387266	broad.mit.edu	36	11	1586141	1586141	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	1586141	1586141	KRTAP5-3	11	A	A	G	6
ACCSL	390110	broad.mit.edu	36	11	44031588	44031588	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	44031588	44031588	ACCSL	11	C	C	A	32
NUP160	23279	broad.mit.edu	36	11	47826395	47826395	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	47826395	47826395	NUP160	11	C	C	G	29
FADD	8772	broad.mit.edu	36	11	69729942	69729942	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	69729942	69729942	FADD	11	G	G	C	42
RSF1	51773	broad.mit.edu	36	11	77055836	77055836	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	77055836	77055836	RSF1	11	T	T	C	58
CARD18	59082	broad.mit.edu	36	11	104514961	104514961	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	104514961	104514961	CARD18	11	G	G	T	48
VWF	7450	broad.mit.edu	36	12	5998813	5998813	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	5998813	5998813	VWF	12	G	G	A	47
RBP5	83758	broad.mit.edu	36	12	7172153	7172153	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	7172153	7172153	RBP5	12	C	C	G	22
CD163L1	283316	broad.mit.edu	36	12	7419173	7419173	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	7419173	7419173	CD163L1	12	T	T	C	51
PXN	5829	broad.mit.edu	36	12	119136393	119136393	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	119136393	119136393	PXN	12	G	G	C	48
RNF31	55072	broad.mit.edu	36	14	23689492	23689492	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	23689492	23689492	RNF31	14	C	C	A	24
SHC4	399694	broad.mit.edu	36	15	46947314	46947314	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	46947314	46947314	SHC4	15	A	A	G	12
HCN4	10021	broad.mit.edu	36	15	71404475	71404475	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	71404475	71404475	HCN4	15	G	G	T	42
PPL	5493	broad.mit.edu	36	16	4880198	4880198	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	4880198	4880198	PPL	16	C	C	T	29
DCUN1D3	123879	broad.mit.edu	36	16	20781014	20781014	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	20781014	20781014	DCUN1D3	16	A	A	G	8
PRSS36	146547	broad.mit.edu	36	16	31062194	31062194	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Nonsense_Mutation	SNP	31062194	31062194	PRSS36	16	C	C	T	21
ARMC5	79798	broad.mit.edu	36	16	31383762	31383762	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	31383762	31383762	ARMC5	16	C	C	A	22
CNOT1	23019	broad.mit.edu	36	16	57133879	57133879	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	57133879	57133879	CNOT1	16	G	G	C	36
DNAH17	8632	broad.mit.edu	36	17	74034652	74034652	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	74034652	74034652	DNAH17	17	T	T	G	64
NFATC1	4772	broad.mit.edu	36	18	75312053	75312053	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	75312053	75312053	NFATC1	18	C	C	T	19
PPAN-P2RY11	692312	broad.mit.edu	36	19	10086200	10086200	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	10086200	10086200	PPAN-P2RY11	19	A	A	C	7
APLP1	333	broad.mit.edu	36	19	41061911	41061911	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	41061911	41061911	APLP1	19	C	C	G	30
ZNF224	7767	broad.mit.edu	36	19	49302639	49302639	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	49302639	49302639	ZNF224	19	C	C	G	20
PPP1R13L	10848	broad.mit.edu	36	19	50593124	50593124	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	50593124	50593124	PPP1R13L	19	C	C	A	27
GRLF1	2909	broad.mit.edu	36	19	52115784	52115784	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	52115784	52115784	GRLF1	19	T	T	A	53
ABCG5	64240	broad.mit.edu	36	2	43904698	43904698	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	43904698	43904698	ABCG5	2	C	C	A	29
PAPOLG	64895	broad.mit.edu	36	2	60852164	60852164	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	60852164	60852164	PAPOLG	2	C	C	G	32
BMP10	27302	broad.mit.edu	36	2	68946356	68946356	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	68946356	68946356	BMP10	2	G	G	A	42
LRRTM1	347730	broad.mit.edu	36	2	80383703	80383703	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	80383703	80383703	LRRTM1	2	C	C	A	27
ZSWIM2	151112	broad.mit.edu	36	2	187401221	187401221	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	187401221	187401221	ZSWIM2	2	T	T	C	64
SEL1L2	80343	broad.mit.edu	36	20	13815034	13815034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	13815034	13815034	SEL1L2	20	G	G	A	40
BOC	91653	broad.mit.edu	36	3	114452142	114452142	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	114452142	114452142	BOC	3	G	G	A	39
HERC6	55008	broad.mit.edu	36	4	89533744	89533744	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	89533744	89533744	HERC6	4	C	C	T	27
LARP7	51574	broad.mit.edu	36	4	113790234	113790234	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	113790234	113790234	LARP7	4	T	T	G	58
TNIP1	10318	broad.mit.edu	36	5	150421932	150421932	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	150421932	150421932	TNIP1	5	G	G	C	43
SERPINB1	1992	broad.mit.edu	36	6	2779179	2779179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	2779179	2779179	SERPINB1	6	C	C	T	29
AIF1	199	broad.mit.edu	36	6	31692100	31692100	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	31692100	31692100	AIF1	6	A	A	T	12
LRFN2	57497	broad.mit.edu	36	6	40508130	40508130	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	40508130	40508130	LRFN2	6	G	G	T	43
PRPH2	5961	broad.mit.edu	36	6	42797589	42797589	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	42797589	42797589	PRPH2	6	C	C	G	32
EPHA1	2041	broad.mit.edu	36	7	142804789	142804789	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	142804789	142804789	EPHA1	7	C	C	T	19
CNBD1	168975	broad.mit.edu	36	8	88318266	88318266	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	88318266	88318266	CNBD1	8	T	T	G	60
PKHD1L1	93035	broad.mit.edu	36	8	110604253	110604253	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	110604253	110604253	PKHD1L1	8	G	G	A	34
RFX3	5991	broad.mit.edu	36	9	3291562	3291562	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	3291562	3291562	RFX3	9	G	G	C	33
FCN1	2219	broad.mit.edu	36	9	136949470	136949470	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	136949470	136949470	FCN1	9	C	C	G	32
SCML1	6322	broad.mit.edu	36	X	17678068	17678068	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	17678068	17678068	SCML1	23	G	G	A	40
HUWE1	10075	broad.mit.edu	36	X	53612533	53612533	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	53612533	53612533	HUWE1	23	C	C	T	20
DRP2	1821	broad.mit.edu	36	X	100380655	100380655	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	100380655	100380655	DRP2	23	C	C	T	26
ARMCX3	51566	broad.mit.edu	36	X	100767422	100767422	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Missense_Mutation	SNP	100767422	100767422	ARMCX3	23	T	T	A	54
BEX4	56271	broad.mit.edu	36	X	102357839	102357839	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	102357839	102357839	BEX4	23	A	A	G	4
L1CAM	3897	broad.mit.edu	36	X	152784144	152784144	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-04-1356-01	Broad	Silent	SNP	152784144	152784144	L1CAM	23	C	C	T	19
TJP1	7082	broad.mit.edu	36	15	27798088	27798104	+	Frame_Shift_Del	DEL	TGGGCCCTGCTGAAGGG	-	TGGGCCCTGCTGAAGGG	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-04-1356-01	Broad	Frame_Shift_Del	DEL	27798088	27798104	TJP1	15	TGGGCCCTGCTGAAGGG	-	TGGGCCCTGCTGAAGGG	63
MYADM	91663	broad.mit.edu	36	19	59069058	59069089	+	Frame_Shift_Del	DEL	GTGGCCTGGACCCGGGCCCGGCCCGGCGAGAT	-	GTGGCCTGGACCCGGGCCCGGCCCGGCGAGAT	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-04-1356-01	Broad	Frame_Shift_Del	DEL	59069058	59069089	MYADM	19	GTGGCCTGGACCCGGGCCCGGCCCGGCGAGAT	-	GTGGCCTGGACCCGGGCCCGGCCCGGCGAGAT	36
USP40	55230	broad.mit.edu	36	2	234054656	234054658	+	In_Frame_Del	DEL	ATC	-	ATC	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-04-1356-01	Broad	In_Frame_Del	DEL	234054656	234054658	USP40	2	ATC	-	ATC	4
ABCF1	23	broad.mit.edu	36	6	30658158	30658172	+	In_Frame_Del	DEL	GGAAGAAGGAGAAGG	-	GGAAGAAGGAGAAGG	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-04-1356-01	Broad	In_Frame_Del	DEL	30658158	30658172	ABCF1	6	GGAAGAAGGAGAAGG	-	GGAAGAAGGAGAAGG	35
FAM86B2	653333	broad.mit.edu	36	8	12335964	12335966	+	In_Frame_Del	DEL	CTG	-	CTG	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-04-1356-01	Broad	In_Frame_Del	DEL	12335964	12335966	FAM86B2	8	CTG	-	CTG	32
CYHR1	50626	broad.mit.edu	36	8	145660466	145660467	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-04-1356-01	TCGA-04-1356-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-04-1356-01	Broad	Frame_Shift_Ins	INS	145660466	145660467	CYHR1	8	-	C	-	38
