Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ERRFI1	54206	broad.mit.edu	36	1	7996687	7996687	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	7996687	7996687	ERRFI1	1	T	T	C	57
THRAP3	9967	broad.mit.edu	36	1	36525163	36525163	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	36525163	36525163	THRAP3	1	C	C	G	22
EPHA10	284656	broad.mit.edu	36	1	37958608	37958609	+	Splice_Site_SNP	DNP	AC	AC	CT	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Splice_Site_SNP	DNP	37958608	37958609	EPHA10	1	AC	AC	CT	6
MAST2	23139	broad.mit.edu	36	1	46262069	46262069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	46262069	46262069	MAST2	1	G	G	A	38
ANK3	288	broad.mit.edu	36	10	61504064	61504064	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	61504064	61504064	ANK3	10	G	G	C	35
CCAR1	55749	broad.mit.edu	36	10	70172224	70172224	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	70172224	70172224	CCAR1	10	C	C	G	30
OPN4	94233	broad.mit.edu	36	10	88408398	88408398	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Nonsense_Mutation	SNP	88408398	88408398	OPN4	10	G	G	A	47
NUMA1	4926	broad.mit.edu	36	11	71404873	71404873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	71404873	71404873	NUMA1	11	C	C	T	29
ING4	51147	broad.mit.edu	36	12	6632438	6632438	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	6632438	6632438	ING4	12	G	G	A	39
CLEC1A	51267	broad.mit.edu	36	12	10125126	10125126	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	10125126	10125126	CLEC1A	12	C	C	T	19
KNTC1	9735	broad.mit.edu	36	12	121653718	121653718	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Silent	SNP	121653718	121653718	KNTC1	12	C	C	T	29
MAB21L1	4081	broad.mit.edu	36	13	34947848	34947848	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	34947848	34947848	MAB21L1	13	C	C	T	17
OR4K5	79317	broad.mit.edu	36	14	19458896	19458896	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Silent	SNP	19458896	19458896	OR4K5	14	C	C	T	25
TGM7	116179	broad.mit.edu	36	15	41372199	41372199	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Nonsense_Mutation	SNP	41372199	41372199	TGM7	15	C	C	A	24
PKD1L2	114780	broad.mit.edu	36	16	79811342	79811342	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Silent	SNP	79811342	79811342	PKD1L2	16	G	G	A	37
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	7518915	7518915	TP53	17	T	T	C	49
MAP2K3	5606	broad.mit.edu	36	17	21144528	21144528	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	21144528	21144528	MAP2K3	17	C	C	T	27
GRIN2C	2905	broad.mit.edu	36	17	70353800	70353800	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	70353800	70353800	GRIN2C	17	C	C	T	23
KIAA0427	9811	broad.mit.edu	36	18	44639822	44639822	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	44639822	44639822	KIAA0427	18	G	G	A	39
EVI5L	115704	broad.mit.edu	36	19	7818660	7818660	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Silent	SNP	7818660	7818660	EVI5L	19	C	C	T	28
KCNF1	3754	broad.mit.edu	36	2	10971379	10971379	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	10971379	10971379	KCNF1	2	A	A	C	3
C2orf71	388939	broad.mit.edu	36	2	29149792	29149792	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Silent	SNP	29149792	29149792	C2orf71	2	C	C	A	25
IL17RB	55540	broad.mit.edu	36	3	53857734	53857734	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	53857734	53857734	IL17RB	3	G	G	A	40
IGSF10	285313	broad.mit.edu	36	3	152648106	152648106	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	152648106	152648106	IGSF10	3	G	G	C	47
PPARGC1A	10891	broad.mit.edu	36	4	23406550	23406550	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	23406550	23406550	PPARGC1A	4	C	C	T	27
UNC5C	8633	broad.mit.edu	36	4	96418498	96418498	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	96418498	96418498	UNC5C	4	C	C	T	30
GNL1	2794	broad.mit.edu	36	6	30629164	30629164	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Silent	SNP	30629164	30629164	GNL1	6	G	G	A	40
ZNF3	7551	broad.mit.edu	36	7	99506938	99506938	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	99506938	99506938	ZNF3	7	C	C	T	31
COG5	10466	broad.mit.edu	36	7	106991578	106991578	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	106991578	106991578	COG5	7	G	G	T	48
ZBTB34	403341	broad.mit.edu	36	9	128681958	128681958	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0891-01	Broad	Missense_Mutation	SNP	128681958	128681958	ZBTB34	9	C	C	A	19
CDK12	51755	broad.mit.edu	36	17	34929807	34929815	+	In_Frame_Del	DEL	ACAGACCCT	-	ACAGACCCT	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01			-	ACAGACCCT	ACAGACCCT	ACAGACCCT	Unknown	Valid	Somatic	Phase_I	Capture				Illumina GAIIx	TCGA-13-0891-01	Broad	In_Frame_Del	DEL	34929807	34929815	CDK12	17	ACAGACCCT	-	ACAGACCCT	2
CPS1	1373	broad.mit.edu	36	2	211164907	211164907	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-13-0891-01	TCGA-13-0891-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0891-01	Broad	Frame_Shift_Del	DEL	211164907	211164907	CPS1	2	T	-	T	56
