Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SLC45A1	50651	broad.mit.edu	36	1	8313185	8313185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	8313185	8313185	SLC45A1	1	G	G	A	39
PTCHD2	57540	broad.mit.edu	36	1	11483988	11483988	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	11483988	11483988	PTCHD2	1	C	C	T	27
OSCP1	127700	broad.mit.edu	36	1	36660987	36660987	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	36660987	36660987	OSCP1	1	C	C	T	21
FLG	2312	broad.mit.edu	36	1	150545296	150545296	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	150545296	150545296	FLG	1	C	C	T	20
CRTC2	200186	broad.mit.edu	36	1	152188416	152188416	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	152188416	152188416	CRTC2	1	T	T	A	63
C1orf9	51430	broad.mit.edu	36	1	170787366	170787366	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	170787366	170787366	C1orf9	1	G	G	A	45
TNR	7143	broad.mit.edu	36	1	173642136	173642136	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	173642136	173642136	TNR	1	G	G	C	44
TNR	7143	broad.mit.edu	36	1	173642441	173642441	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	173642441	173642441	TNR	1	C	C	A	32
CRB1	23418	broad.mit.edu	36	1	195663207	195663207	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	195663207	195663207	CRB1	1	A	A	G	11
CACNA1S	779	broad.mit.edu	36	1	199327795	199327795	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	199327795	199327795	CACNA1S	1	C	C	T	28
KISS1	3814	broad.mit.edu	36	1	202428580	202428580	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	202428580	202428580	KISS1	1	G	G	T	43
SYT14	255928	broad.mit.edu	36	1	208261190	208261190	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	208261190	208261190	SYT14	1	A	A	T	12
CNIH4	29097	broad.mit.edu	36	1	222625632	222625632	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	222625632	222625632	CNIH4	1	C	C	A	17
LBR	3930	broad.mit.edu	36	1	223676487	223676487	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	223676487	223676487	LBR	1	G	G	C	42
HERC4	26091	broad.mit.edu	36	10	69362505	69362505	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	69362505	69362505	HERC4	10	T	T	C	52
FAM45A	404636	broad.mit.edu	36	10	120873066	120873066	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	120873066	120873066	FAM45A	10	G	G	A	46
TUBGCP2	10844	broad.mit.edu	36	10	134945817	134945817	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	134945817	134945817	TUBGCP2	10	T	T	C	64
DKK3	27122	broad.mit.edu	36	11	11942730	11942730	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	11942730	11942730	DKK3	11	C	C	G	18
SLC43A3	29015	broad.mit.edu	36	11	56933999	56933999	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	56933999	56933999	SLC43A3	11	G	G	C	42
PDE2A	5138	broad.mit.edu	36	11	71974286	71974286	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Splice_Site_SNP	SNP	71974286	71974286	PDE2A	11	C	C	A	24
STYK1	55359	broad.mit.edu	36	12	10671523	10671523	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	10671523	10671523	STYK1	12	T	T	A	55
ACCN2	41	broad.mit.edu	36	12	48758091	48758091	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	48758091	48758091	ACCN2	12	A	A	T	15
GRIP1	23426	broad.mit.edu	36	12	65135508	65135508	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	65135508	65135508	GRIP1	12	T	T	A	59
E2F7	144455	broad.mit.edu	36	12	75947850	75947850	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	75947850	75947850	E2F7	12	A	A	T	11
MGAT4C	25834	broad.mit.edu	36	12	84898326	84898326	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	84898326	84898326	MGAT4C	12	A	A	C	5
PARP4	143	broad.mit.edu	36	13	23958373	23958373	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	23958373	23958373	PARP4	13	T	T	C	63
TRPC4	7223	broad.mit.edu	36	13	37109452	37109452	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	37109452	37109452	TRPC4	13	T	T	G	50
OXGR1	27199	broad.mit.edu	36	13	96437261	96437261	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	96437261	96437261	OXGR1	13	C	C	T	19
ADCY4	196883	broad.mit.edu	36	14	23861158	23861158	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	23861158	23861158	ADCY4	14	G	G	A	35
SPTBN5	51332	broad.mit.edu	36	15	39960656	39960656	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	39960656	39960656	SPTBN5	15	G	G	A	42
MYO5A	4644	broad.mit.edu	36	15	50476768	50476768	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	50476768	50476768	MYO5A	15	C	C	G	21
HERC1	8925	broad.mit.edu	36	15	61745371	61745371	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	61745371	61745371	HERC1	15	G	G	A	45
SLC2A4	6517	broad.mit.edu	36	17	7130597	7130597	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	7130597	7130597	SLC2A4	17	G	G	A	41
MYH13	8735	broad.mit.edu	36	17	10204062	10204062	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Nonsense_Mutation	SNP	10204062	10204062	MYH13	17	A	A	T	4
NF1	4763	broad.mit.edu	36	17	26533651	26533651	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Splice_Site_SNP	SNP	26533651	26533651	NF1	17	G	G	T	33
NF1	4763	broad.mit.edu	36	17	26678946	26678946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	26678946	26678946	NF1	17	G	G	A	38
KRT32	3882	broad.mit.edu	36	17	36869938	36869938	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	36869938	36869938	KRT32	17	G	G	T	42
G6PC3	92579	broad.mit.edu	36	17	39508223	39508223	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	39508223	39508223	G6PC3	17	G	G	A	45
ASXL3	80816	broad.mit.edu	36	18	29576967	29576967	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	29576967	29576967	ASXL3	18	A	A	T	10
WDR7	23335	broad.mit.edu	36	18	52509591	52509591	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Splice_Site_SNP	SNP	52509591	52509591	WDR7	18	G	G	A	44
LRRC8E	80131	broad.mit.edu	36	19	7866518	7866518	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	7866518	7866518	LRRC8E	19	C	C	T	29
ZNF491	126069	broad.mit.edu	36	19	11778484	11778484	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	11778484	11778484	ZNF491	19	G	G	T	41
UPF1	5976	broad.mit.edu	36	19	18827852	18827852	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	18827852	18827852	UPF1	19	C	C	T	22
EGLN2	112398	broad.mit.edu	36	19	45998876	45998876	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	45998876	45998876	EGLN2	19	C	C	T	27
PSG2	5670	broad.mit.edu	36	19	48277104	48277104	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	48277104	48277104	PSG2	19	A	A	T	7
PPP6R1	22870	broad.mit.edu	36	19	60439917	60439917	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	60439917	60439917	PPP6R1	19	C	C	A	26
NRXN1	9378	broad.mit.edu	36	2	50553080	50553080	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	50553080	50553080	NRXN1	2	G	G	A	48
RTN4	57142	broad.mit.edu	36	2	55106196	55106196	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	55106196	55106196	RTN4	2	G	G	C	33
FAM123C	205147	broad.mit.edu	36	2	131238031	131238031	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	131238031	131238031	FAM123C	2	C	C	G	22
ERMN	57471	broad.mit.edu	36	2	157886480	157886480	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	157886480	157886480	ERMN	2	G	G	A	36
GAD1	2571	broad.mit.edu	36	2	171395746	171395746	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	171395746	171395746	GAD1	2	A	A	T	4
PDK1	5163	broad.mit.edu	36	2	173137530	173137531	+	Missense_Mutation	DNP	CA	CA	AC	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	DNP	173137530	173137531	PDK1	2	CA	CA	AC	17
DGKD	8527	broad.mit.edu	36	2	234041851	234041851	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	234041851	234041851	DGKD	2	C	C	A	18
BOK	666	broad.mit.edu	36	2	242150490	242150490	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	242150490	242150490	BOK	2	T	T	C	55
uc002wme.2	56261	broad.mit.edu	36	20	5476439	5476439	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	5476439	5476439	uc002wme.2	20	G	G	A	42
GHRH	2691	broad.mit.edu	36	20	35318268	35318268	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	35318268	35318268	GHRH	20	A	A	C	6
MATN4	8785	broad.mit.edu	36	20	43366781	43366781	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	43366781	43366781	MATN4	20	G	G	A	37
PHACTR3	116154	broad.mit.edu	36	20	57763775	57763775	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	57763775	57763775	PHACTR3	20	G	G	A	41
TMEM50B	757	broad.mit.edu	36	21	33749915	33749915	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	33749915	33749915	TMEM50B	21	A	A	C	13
C21orf33	8209	broad.mit.edu	36	21	44380437	44380437	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	44380437	44380437	C21orf33	21	C	C	A	25
SLC35E4	339665	broad.mit.edu	36	22	29362922	29362922	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	29362922	29362922	SLC35E4	22	T	T	C	56
CYTH4	27128	broad.mit.edu	36	22	36035259	36035259	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	36035259	36035259	CYTH4	22	C	C	G	24
GTPBP1	9567	broad.mit.edu	36	22	37441971	37441971	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	37441971	37441971	GTPBP1	22	G	G	C	34
L3MBTL2	83746	broad.mit.edu	36	22	39939923	39939923	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	39939923	39939923	L3MBTL2	22	T	T	G	54
XRCC6	2547	broad.mit.edu	36	22	40379635	40379635	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	40379635	40379635	XRCC6	22	C	C	A	24
CHKB	1120	broad.mit.edu	36	22	49367155	49367155	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	49367155	49367155	CHKB	22	G	G	A	38
ITPR1	3708	broad.mit.edu	36	3	4678822	4678822	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	4678822	4678822	ITPR1	3	T	T	A	54
GRM7	2917	broad.mit.edu	36	3	7595140	7595140	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	7595140	7595140	GRM7	3	G	G	A	37
TTC21A	199223	broad.mit.edu	36	3	39145335	39145335	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	39145335	39145335	TTC21A	3	G	G	A	35
ZNF35	7584	broad.mit.edu	36	3	44676299	44676299	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	44676299	44676299	ZNF35	3	G	G	A	41
RTP1	132112	broad.mit.edu	36	3	188400438	188400438	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	188400438	188400438	RTP1	3	G	G	A	38
PIGG	54872	broad.mit.edu	36	4	514498	514498	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	514498	514498	PIGG	4	G	G	A	46
MAN2B2	23324	broad.mit.edu	36	4	6650855	6650855	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	6650855	6650855	MAN2B2	4	T	T	A	55
RG9MTD2	93587	broad.mit.edu	36	4	100689519	100689519	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	100689519	100689519	RG9MTD2	4	C	C	G	30
PCDHA3	56145	broad.mit.edu	36	5	140163241	140163241	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	140163241	140163241	PCDHA3	5	T	T	C	59
PCDHA13	56136	broad.mit.edu	36	5	140242876	140242876	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	140242876	140242876	PCDHA13	5	C	C	T	29
FBXO38	81545	broad.mit.edu	36	5	147800981	147800981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	147800981	147800981	FBXO38	5	G	G	A	33
G3BP1	10146	broad.mit.edu	36	5	151159746	151159746	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	151159746	151159746	G3BP1	5	C	C	G	22
ITK	3702	broad.mit.edu	36	5	156577476	156577476	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	156577476	156577476	ITK	5	C	C	T	24
DOCK2	1794	broad.mit.edu	36	5	169368318	169368318	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	169368318	169368318	DOCK2	5	G	G	C	44
KCNMB1	3779	broad.mit.edu	36	5	169738505	169738505	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	169738505	169738505	KCNMB1	5	G	G	A	40
HIST1H4E	8367	broad.mit.edu	36	6	26313087	26313087	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	26313087	26313087	HIST1H4E	6	G	G	A	38
B3GALT4	8705	broad.mit.edu	36	6	33353220	33353220	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	33353220	33353220	B3GALT4	6	C	C	G	28
CUL9	23113	broad.mit.edu	36	6	43262063	43262063	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	43262063	43262063	CUL9	6	G	G	C	33
LIN28B	389421	broad.mit.edu	36	6	105633035	105633035	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	105633035	105633035	LIN28B	6	C	C	T	24
TRDN	10345	broad.mit.edu	36	6	123933775	123933775	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	123933775	123933775	TRDN	6	T	T	A	60
VNN1	8876	broad.mit.edu	36	6	133045988	133045988	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	133045988	133045988	VNN1	6	C	C	G	25
RNF216	54476	broad.mit.edu	36	7	5629094	5629094	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	5629094	5629094	RNF216	7	C	C	T	29
POLM	27434	broad.mit.edu	36	7	44085813	44085813	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	44085813	44085813	POLM	7	C	C	T	27
GTF2IRD1	9569	broad.mit.edu	36	7	73643201	73643201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	73643201	73643201	GTF2IRD1	7	C	C	A	22
CACNA2D1	781	broad.mit.edu	36	7	81429721	81429721	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	81429721	81429721	CACNA2D1	7	C	C	A	20
PTPRZ1	5803	broad.mit.edu	36	7	121461622	121461622	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	121461622	121461622	PTPRZ1	7	C	C	A	18
RP1L1	94137	broad.mit.edu	36	8	10518074	10518074	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Nonsense_Mutation	SNP	10518074	10518074	RP1L1	8	G	G	T	34
RAB11FIP1	80223	broad.mit.edu	36	8	37848787	37848787	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	37848787	37848787	RAB11FIP1	8	G	G	A	41
OSR2	116039	broad.mit.edu	36	8	100030740	100030740	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	100030740	100030740	OSR2	8	G	G	A	35
KLHL9	55958	broad.mit.edu	36	9	21323996	21323996	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Nonsense_Mutation	SNP	21323996	21323996	KLHL9	9	G	G	C	45
GABBR2	9568	broad.mit.edu	36	9	100095912	100095912	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	100095912	100095912	GABBR2	9	A	A	G	16
TLR4	7099	broad.mit.edu	36	9	119516716	119516716	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	119516716	119516716	TLR4	9	G	G	A	41
HSPA5	3309	broad.mit.edu	36	9	127038923	127038923	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	127038923	127038923	HSPA5	9	A	A	G	16
HSPA5	3309	broad.mit.edu	36	9	127040367	127040367	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	127040367	127040367	HSPA5	9	T	T	A	49
SURF1	6834	broad.mit.edu	36	9	135208748	135208748	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Nonsense_Mutation	SNP	135208748	135208748	SURF1	9	G	G	T	48
NOTCH1	4851	broad.mit.edu	36	9	138527703	138527703	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	138527703	138527703	NOTCH1	9	G	G	C	44
WWC3	55841	broad.mit.edu	36	X	10044547	10044547	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	10044547	10044547	WWC3	23	G	G	T	35
RS1	6247	broad.mit.edu	36	X	18572495	18572495	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Nonsense_Mutation	SNP	18572495	18572495	RS1	23	G	G	C	48
PDHA1	5160	broad.mit.edu	36	X	19277365	19277365	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Silent	SNP	19277365	19277365	PDHA1	23	G	G	A	47
EFHC2	80258	broad.mit.edu	36	X	43922724	43922724	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	43922724	43922724	EFHC2	23	G	G	T	44
PQBP1	10084	broad.mit.edu	36	X	48644547	48644547	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	48644547	48644547	PQBP1	23	A	A	G	10
TRO	7216	broad.mit.edu	36	X	54966658	54966658	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	54966658	54966658	TRO	23	C	C	G	20
RGAG4	340526	broad.mit.edu	36	X	71267322	71267322	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	71267322	71267322	RGAG4	23	A	A	C	5
MTM1	4534	broad.mit.edu	36	X	149560547	149560547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2078-01	Broad	Missense_Mutation	SNP	149560547	149560547	MTM1	23	C	C	T	30
TP53	7157	broad.mit.edu	36	17	7518239	7518241	+	In_Frame_Del	DEL	GTG	-	GTG	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-2078-01	Broad	In_Frame_Del	DEL	7518239	7518241	TP53	17	GTG	-	GTG	48
CNTNAP1	8506	broad.mit.edu	36	17	38096348	38096378	+	Frame_Shift_Del	DEL	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	-	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-2078-01	Broad	Frame_Shift_Del	DEL	38096348	38096378	CNTNAP1	17	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	-	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	8
TBP	6908	broad.mit.edu	36	6	170712963	170712965	+	In_Frame_Del	DEL	CAA	-	-	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-2078-01	Broad	In_Frame_Del	DEL	170712963	170712965	TBP	6	CAA	-	-	25
PRKDC	5591	broad.mit.edu	36	8	48963679	48963684	+	In_Frame_Del	DEL	TACAGG	-	TACAGG	novel	Unknown	TCGA-23-2078-01	TCGA-23-2078-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-2078-01	Broad	In_Frame_Del	DEL	48963679	48963684	PRKDC	8	TACAGG	-	TACAGG	61
