Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
HRNR	388697	broad.mit.edu	36	1	150459981	150459981	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	150459981	150459981	HRNR	1	C	C	T	21
LHX9	56956	broad.mit.edu	36	1	196153671	196153671	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	196153671	196153671	LHX9	1	G	G	T	42
PPP2R5A	5525	broad.mit.edu	36	1	210596633	210596633	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01			C	A	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	210596633	210596633	PPP2R5A	1	C	C	A	29
ZP4	57829	broad.mit.edu	36	1	236118301	236118301	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	236118301	236118301	ZP4	1	G	G	A	41
NKX2-3	159296	broad.mit.edu	36	10	101282907	101282907	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	101282907	101282907	NKX2-3	10	C	C	T	18
MUC5B	727897	broad.mit.edu	36	11	1227452	1227452	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	1227452	1227452	MUC5B	11	A	A	C	2
OR51F1	256892	broad.mit.edu	36	11	4747057	4747057	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	4747057	4747057	OR51F1	11	T	T	C	52
OR8H3	390152	broad.mit.edu	36	11	55646913	55646913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	55646913	55646913	OR8H3	11	G	G	A	45
OR5AK2	390181	broad.mit.edu	36	11	56513363	56513363	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Silent	SNP	56513363	56513363	OR5AK2	11	T	T	C	55
ANO2	57101	broad.mit.edu	36	12	5555330	5555330	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	5555330	5555330	ANO2	12	T	T	C	60
ESYT1	23344	broad.mit.edu	36	12	54818532	54818532	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Silent	SNP	54818532	54818532	ESYT1	12	G	G	A	34
TBC1D4	9882	broad.mit.edu	36	13	74784899	74784899	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	74784899	74784899	TBC1D4	13	A	A	C	12
TRPM1	4308	broad.mit.edu	36	15	29117636	29117636	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	29117636	29117636	TRPM1	15	G	G	A	43
PLSCR3	57048	broad.mit.edu	36	17	7237407	7237407	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	7237407	7237407	PLSCR3	17	G	G	A	38
TP53	7157	broad.mit.edu	36	17	7517852	7517852	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Nonsense_Mutation	SNP	7517852	7517852	TP53	17	C	C	A	29
ICAM1	3383	broad.mit.edu	36	19	10256085	10256085	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	10256085	10256085	ICAM1	19	C	C	T	23
CPS1	1373	broad.mit.edu	36	2	211175180	211175180	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	211175180	211175180	CPS1	2	G	G	T	46
ISX	91464	broad.mit.edu	36	22	33793246	33793246	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	33793246	33793246	ISX	22	G	G	T	43
EP300	2033	broad.mit.edu	36	22	39894458	39894458	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1471-01	Broad	Nonsense_Mutation	SNP	39894458	39894458	EP300	22	C	C	T	27
RAD18	56852	broad.mit.edu	36	3	8980025	8980025	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Silent	SNP	8980025	8980025	RAD18	3	G	G	A	45
ADCY5	111	broad.mit.edu	36	3	124649298	124649298	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	124649298	124649298	ADCY5	3	G	G	A	38
PCDHA4	56144	broad.mit.edu	36	5	140167813	140167813	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	140167813	140167813	PCDHA4	5	C	C	T	31
HIST1H1E	3008	broad.mit.edu	36	6	26264769	26264769	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	26264769	26264769	HIST1H1E	6	T	T	C	50
CTTNBP2	83992	broad.mit.edu	36	7	117219844	117219844	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Silent	SNP	117219844	117219844	CTTNBP2	7	G	G	A	39
PEBP4	157310	broad.mit.edu	36	8	22731160	22731160	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	22731160	22731160	PEBP4	8	C	C	T	32
ABCA1	19	broad.mit.edu	36	9	106634791	106634791	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	106634791	106634791	ABCA1	9	G	G	A	38
TTC16	158248	broad.mit.edu	36	9	129532747	129532747	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1471-01	Broad	Missense_Mutation	SNP	129532747	129532747	TTC16	9	G	G	A	35
SSPO	23145	broad.mit.edu	36	7	149134850	149134853	+	Frame_Shift_Del	DEL	GATA	-	GATA	novel	Unknown	TCGA-24-1471-01	TCGA-24-1471-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-1471-01	Broad	Frame_Shift_Del	DEL	149134850	149134853	SSPO	7	GATA	-	GATA	41
