Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
KIAA1751	85452	broad.mit.edu	36	1	1887722	1887722	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	1887722	1887722	KIAA1751	1	A	A	G	13
PRDM16	63976	broad.mit.edu	36	1	3318830	3318830	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	3318830	3318830	PRDM16	1	C	C	G	24
GRIK3	2899	broad.mit.edu	36	1	37129210	37129211	+	Missense_Mutation	DNP	CA	CA	AG	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	DNP	37129210	37129211	GRIK3	1	CA	CA	AG	25
MACF1	23499	broad.mit.edu	36	1	39689404	39689404	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	39689404	39689404	MACF1	1	G	G	A	34
CCDC17	149483	broad.mit.edu	36	1	45861055	45861055	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	45861055	45861055	CCDC17	1	G	G	T	33
BSND	7809	broad.mit.edu	36	1	55246503	55246503	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	55246503	55246503	BSND	1	C	C	T	22
CLCA1	1179	broad.mit.edu	36	1	86731793	86731793	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	86731793	86731793	CLCA1	1	A	A	T	7
CSDE1	7812	broad.mit.edu	36	1	115064767	115064767	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	115064767	115064767	CSDE1	1	C	C	A	17
CD48	962	broad.mit.edu	36	1	158948106	158948106	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	158948106	158948106	CD48	1	G	G	A	47
SH3BP5L	80851	broad.mit.edu	36	1	247072914	247072914	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	247072914	247072914	SH3BP5L	1	G	G	A	39
WAPAL	23063	broad.mit.edu	36	10	88249462	88249462	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	88249462	88249462	WAPAL	10	G	G	T	48
CCDC73	493860	broad.mit.edu	36	11	32592523	32592523	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	32592523	32592523	CCDC73	11	A	A	C	7
SLCO2B1	11309	broad.mit.edu	36	11	74593133	74593133	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	74593133	74593133	SLCO2B1	11	A	A	T	12
NCAM1	4684	broad.mit.edu	36	11	112609226	112609226	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	112609226	112609226	NCAM1	11	C	C	T	30
ZBTB16	7704	broad.mit.edu	36	11	113440093	113440093	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	113440093	113440093	ZBTB16	11	C	C	G	27
LRP6	4040	broad.mit.edu	36	12	12169545	12169545	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	12169545	12169545	LRP6	12	T	T	A	54
ENDOU	8909	broad.mit.edu	36	12	46390931	46390931	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	46390931	46390931	ENDOU	12	C	C	T	23
DPY19L2	283417	broad.mit.edu	36	12	62348317	62348317	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	62348317	62348317	DPY19L2	12	G	G	C	35
MYBPC1	4604	broad.mit.edu	36	12	100598365	100598365	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	100598365	100598365	MYBPC1	12	T	T	G	51
AHNAK2	113146	broad.mit.edu	36	14	104480969	104480969	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	104480969	104480969	AHNAK2	14	G	G	A	41
MAP1A	4130	broad.mit.edu	36	15	41604119	41604119	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	41604119	41604119	MAP1A	15	G	G	T	42
SIN3A	25942	broad.mit.edu	36	15	73480188	73480188	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	73480188	73480188	SIN3A	15	T	T	C	49
ZNF423	23090	broad.mit.edu	36	16	48229945	48229945	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	48229945	48229945	ZNF423	16	C	C	A	31
MYBBP1A	10514	broad.mit.edu	36	17	4402653	4402653	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	4402653	4402653	MYBBP1A	17	C	C	A	25
TP53	7157	broad.mit.edu	36	17	7519267	7519267	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	7519267	7519267	TP53	17	G	G	C	35
NF1	4763	broad.mit.edu	36	17	26580262	26580262	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Nonsense_Mutation	SNP	26580262	26580262	NF1	17	C	C	T	17
AATF	26574	broad.mit.edu	36	17	32488042	32488042	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	32488042	32488042	AATF	17	C	C	G	21
CNTNAP1	8506	broad.mit.edu	36	17	38093414	38093414	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	38093414	38093414	CNTNAP1	17	C	C	G	24
CDH7	1005	broad.mit.edu	36	18	61677924	61677924	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	61677924	61677924	CDH7	18	G	G	T	44
SAFB	6294	broad.mit.edu	36	19	5619291	5619291	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	5619291	5619291	SAFB	19	C	C	G	31
OR7E24	26648	broad.mit.edu	36	19	9222964	9222964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	9222964	9222964	OR7E24	19	C	C	T	30
PXDN	7837	broad.mit.edu	36	2	1670473	1670473	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	1670473	1670473	PXDN	2	G	G	A	48
ACVR1C	130399	broad.mit.edu	36	2	158107611	158107612	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	DNP	158107611	158107612	ACVR1C	2	GC	GC	AA	34
TTN	7273	broad.mit.edu	36	2	179141455	179141455	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	179141455	179141455	TTN	2	C	C	T	31
CERKL	375298	broad.mit.edu	36	2	182112074	182112074	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	182112074	182112074	CERKL	2	C	C	T	18
CLK1	1195	broad.mit.edu	36	2	201430821	201430821	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	201430821	201430821	CLK1	2	G	G	T	46
INO80D	54891	broad.mit.edu	36	2	206577799	206577799	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	206577799	206577799	INO80D	2	G	G	T	43
VIL1	7429	broad.mit.edu	36	2	219002836	219002836	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	219002836	219002836	VIL1	2	G	G	A	35
BPIL1	80341	broad.mit.edu	36	20	31072044	31072044	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	31072044	31072044	BPIL1	20	G	G	A	42
TTPAL	79183	broad.mit.edu	36	20	42542284	42542284	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	42542284	42542284	TTPAL	20	C	C	T	19
FBLN2	2199	broad.mit.edu	36	3	13653070	13653070	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Splice_Site_SNP	SNP	13653070	13653070	FBLN2	3	G	G	A	40
C3orf20	84077	broad.mit.edu	36	3	14773895	14773895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	14773895	14773895	C3orf20	3	G	G	A	37
ZNF167	55888	broad.mit.edu	36	3	44586966	44586966	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	44586966	44586966	ZNF167	3	C	C	G	32
ROBO2	6092	broad.mit.edu	36	3	77682761	77682761	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	77682761	77682761	ROBO2	3	T	T	A	61
COL6A6	131873	broad.mit.edu	36	3	131776047	131776047	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	131776047	131776047	COL6A6	3	G	G	C	34
TACC3	10460	broad.mit.edu	36	4	1700162	1700162	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	1700162	1700162	TACC3	4	A	A	G	10
MYLIP	29116	broad.mit.edu	36	6	16251255	16251255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	16251255	16251255	MYLIP	6	G	G	A	41
TINAG	27283	broad.mit.edu	36	6	54281422	54281422	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	54281422	54281422	TINAG	6	C	C	G	29
ROS1	6098	broad.mit.edu	36	6	117814749	117814749	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	117814749	117814749	ROS1	6	C	C	A	17
RAET1L	154064	broad.mit.edu	36	6	150384998	150384998	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	150384998	150384998	RAET1L	6	C	C	T	24
AUTS2	26053	broad.mit.edu	36	7	69893124	69893124	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	69893124	69893124	AUTS2	7	G	G	A	42
TEX15	56154	broad.mit.edu	36	8	30820551	30820551	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	30820551	30820551	TEX15	8	G	G	C	33
TM7SF4	81501	broad.mit.edu	36	8	105430719	105430719	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	105430719	105430719	TM7SF4	8	G	G	C	45
ANGPT1	284	broad.mit.edu	36	8	108417619	108417619	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	108417619	108417619	ANGPT1	8	G	G	T	35
FAM135B	51059	broad.mit.edu	36	8	139214186	139214186	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	139214186	139214186	FAM135B	8	G	G	T	42
IFNW1	3467	broad.mit.edu	36	9	21131017	21131017	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	21131017	21131017	IFNW1	9	G	G	A	36
FAM47C	442444	broad.mit.edu	36	X	36938588	36938588	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Silent	SNP	36938588	36938588	FAM47C	23	G	G	A	39
CAPN6	827	broad.mit.edu	36	X	110393712	110393712	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2094-01	Broad	Missense_Mutation	SNP	110393712	110393712	CAPN6	23	C	C	G	29
DMKN	93099	broad.mit.edu	36	19	40694202	40694252	+	In_Frame_Del	DEL	CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	-	CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	novel	Unknown	TCGA-61-2094-01	TCGA-61-2094-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2094-01	Broad	In_Frame_Del	DEL	40694202	40694252	DMKN	19	CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	-	CTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	20
