Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
OIT3	170392	broad.mit.edu	36	10	74354372	74354372	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	74354372	74354372	OIT3	10	T	T	A	50
GSTO2	119391	broad.mit.edu	36	10	106047396	106047396	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	106047396	106047396	GSTO2	10	C	C	T	22
PACS1	55690	broad.mit.edu	36	11	65757102	65757102	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	65757102	65757102	PACS1	11	G	G	C	41
SERPINH1	871	broad.mit.edu	36	11	74960735	74960735	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	74960735	74960735	SERPINH1	11	C	C	G	24
ACAD8	27034	broad.mit.edu	36	11	133632324	133632325	+	Missense_Mutation	DNP	GG	GG	AT	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	DNP	133632324	133632325	ACAD8	11	GG	GG	AT	35
ITGB7	3695	broad.mit.edu	36	12	51876209	51876209	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	51876209	51876209	ITGB7	12	G	G	A	45
CAPS2	84698	broad.mit.edu	36	12	73973365	73973365	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	73973365	73973365	CAPS2	12	C	C	A	28
N4BP2L2	10443	broad.mit.edu	36	13	31915740	31915740	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	31915740	31915740	N4BP2L2	13	G	G	T	35
ZNF828	283489	broad.mit.edu	36	13	114108760	114108760	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	114108760	114108760	ZNF828	13	T	T	C	50
DYNC1H1	1778	broad.mit.edu	36	14	101544407	101544407	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	101544407	101544407	DYNC1H1	14	C	C	G	30
TGM7	116179	broad.mit.edu	36	15	41367123	41367123	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	41367123	41367123	TGM7	15	G	G	A	35
TIPIN	54962	broad.mit.edu	36	15	64428797	64428797	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	64428797	64428797	TIPIN	15	C	C	G	21
SNX29	92017	broad.mit.edu	36	16	12479143	12479143	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	12479143	12479143	SNX29	16	C	C	T	25
CDH3	1001	broad.mit.edu	36	16	67273825	67273825	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	67273825	67273825	CDH3	16	C	C	T	19
SHPK	23729	broad.mit.edu	36	17	3471376	3471376	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	3471376	3471376	SHPK	17	T	T	C	51
TP53	7157	broad.mit.edu	36	17	7514728	7514728	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Nonsense_Mutation	SNP	7514728	7514728	TP53	17	G	G	A	39
MYH4	4622	broad.mit.edu	36	17	10301583	10301583	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	10301583	10301583	MYH4	17	G	G	T	48
C17orf102	400591	broad.mit.edu	36	17	29928688	29928688	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	29928688	29928688	C17orf102	17	C	C	T	28
POLD1	5424	broad.mit.edu	36	19	55604717	55604717	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	55604717	55604717	POLD1	19	G	G	T	40
TLX2	3196	broad.mit.edu	36	2	74596361	74596361	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	74596361	74596361	TLX2	2	C	C	G	30
COL5A2	1290	broad.mit.edu	36	2	189612490	189612490	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	189612490	189612490	COL5A2	2	A	A	C	7
ACSL3	2181	broad.mit.edu	36	2	223494251	223494251	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	223494251	223494251	ACSL3	2	C	C	A	24
PPIL2	23759	broad.mit.edu	36	22	20369067	20369067	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	20369067	20369067	PPIL2	22	G	G	A	40
ZBED4	9889	broad.mit.edu	36	22	48666474	48666474	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	48666474	48666474	ZBED4	22	C	C	G	22
NUP210	23225	broad.mit.edu	36	3	13335796	13335796	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	13335796	13335796	NUP210	3	C	C	A	30
WNT7A	7476	broad.mit.edu	36	3	13871219	13871219	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	13871219	13871219	WNT7A	3	G	G	A	44
GRID2	2895	broad.mit.edu	36	4	93730328	93730328	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	93730328	93730328	GRID2	4	A	A	C	5
CDH18	1016	broad.mit.edu	36	5	19556547	19556547	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	19556547	19556547	CDH18	5	T	T	A	49
DMGDH	29958	broad.mit.edu	36	5	78358071	78358071	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	78358071	78358071	DMGDH	5	C	C	G	31
PPIC	5480	broad.mit.edu	36	5	122389422	122389422	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	122389422	122389422	PPIC	5	A	A	C	2
ADAMTS19	171019	broad.mit.edu	36	5	129098563	129098563	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	129098563	129098563	ADAMTS19	5	A	A	T	4
PCDHB7	56129	broad.mit.edu	36	5	140534449	140534449	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	140534449	140534449	PCDHB7	5	G	G	A	40
PDGFRB	5159	broad.mit.edu	36	5	149496770	149496770	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	149496770	149496770	PDGFRB	5	G	G	C	35
DOCK2	1794	broad.mit.edu	36	5	169416307	169416307	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	169416307	169416307	DOCK2	5	G	G	A	39
MYLK4	340156	broad.mit.edu	36	6	2634129	2634129	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	2634129	2634129	MYLK4	6	G	G	A	38
GABBR1	2550	broad.mit.edu	36	6	29706244	29706244	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Nonsense_Mutation	SNP	29706244	29706244	GABBR1	6	G	G	A	47
EPHA7	2045	broad.mit.edu	36	6	94009931	94009931	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	94009931	94009931	EPHA7	6	G	G	C	45
ABCA13	154664	broad.mit.edu	36	7	48399249	48399249	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	48399249	48399249	ABCA13	7	T	T	C	59
HIP1	3092	broad.mit.edu	36	7	75025480	75025480	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	75025480	75025480	HIP1	7	T	T	G	52
PLOD3	8985	broad.mit.edu	36	7	100643184	100643184	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	100643184	100643184	PLOD3	7	T	T	A	50
FOXP2	93986	broad.mit.edu	36	7	114071986	114071986	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Nonsense_Mutation	SNP	114071986	114071986	FOXP2	7	G	G	T	45
C7orf58	79974	broad.mit.edu	36	7	120664099	120664099	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	120664099	120664099	C7orf58	7	A	A	G	12
PARP12	64761	broad.mit.edu	36	7	139393278	139393278	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Splice_Site_SNP	SNP	139393278	139393278	PARP12	7	T	T	A	55
TRPV5	56302	broad.mit.edu	36	7	142336330	142336330	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Silent	SNP	142336330	142336330	TRPV5	7	G	G	A	44
RP1	6101	broad.mit.edu	36	8	55699974	55699974	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	55699974	55699974	RP1	8	C	C	G	29
KIF24	347240	broad.mit.edu	36	9	34246558	34246558	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	34246558	34246558	KIF24	9	G	G	C	47
TRPM3	80036	broad.mit.edu	36	9	72615968	72615968	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	72615968	72615968	TRPM3	9	A	A	T	1
DCAF8L1	139425	broad.mit.edu	36	X	27908693	27908693	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	27908693	27908693	DCAF8L1	23	C	C	G	23
BCOR	54880	broad.mit.edu	36	X	39801518	39801518	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Nonsense_Mutation	SNP	39801518	39801518	BCOR	23	C	C	A	30
HUWE1	10075	broad.mit.edu	36	X	53596376	53596376	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	53596376	53596376	HUWE1	23	C	C	T	20
HTR2C	3358	broad.mit.edu	36	X	114047863	114047863	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	114047863	114047863	HTR2C	23	C	C	G	32
DDX26B	203522	broad.mit.edu	36	X	134534562	134534562	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01	TCGA-61-2097-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2097-01	Broad	Missense_Mutation	SNP	134534562	134534562	DDX26B	23	C	C	T	20
