# Created: Tue Jul 03 12:41:22 EDT 2012 by cgaadm
# Job: 119584    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: MutationPackagerCoverage urn:lsid:broadinstitute.org:cancer.genome.analysis:00492:11
# Parameters: 
#    samplestamp = file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_06_23__00_00_19.samplestamp.txt
#    annotationids = tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf,tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf,tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf
#    doNotCreateManifest = -m
#    doNotCreateProperties = -p
#    datapathsfile = dependentsValues3353616975641705690.tsv   /gp/getFile.jsp?task=&file=cgaadm/Axis1722244434645688016.att_dependentsValues3353616975641705690.tsv
#    outdir = .
#    infile2 = dependentsValues3373326274052169342.tsv   /gp/getFile.jsp?task=&file=cgaadm/Axis5775889773180610822.att_dependentsValues3373326274052169342.tsv
