GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.GBM.2012_06_23__00_00_19.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationid | exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues1835318223786396059.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues7295362134239819872.tsv |
GDAC_MergeDataFiles2 output filename | GBM |
GDAC_MergeDataFiles2 row_column | column |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data.data |
Execution Times: | |
Submitted: | 16:19:41 02-07-12 |
Completed: | |
Elapsed: | 00 hrs 01 mins 34 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 118049] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.GBM.2012_06_23__00_00_19.samplestamp.txt |
annotationid | exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data |
sdrffilename | |
datapathsfile | dependentsValues1835318223786396059.tsv |
Output Files: | |
GBM.merger.sdrf.txt | |
dcc_archive.properties | |
.lsf.out | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 16:19:42 02-07-12 |
Completed: | 16:20:01 02-07-12 |
Elapsed: | 00 hrs 00 mins 19 secs |
step 2. GDAC_MergeDataFiles [id: 118050] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | dependentsValues7295362134239819872.tsv |
output filename | GBM |
row_column | column |
num_headers | 1 |
filetype | exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data.data |
Output Files: | |
GBM.exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data.data.txt | |
stdout.txt |
Execution Times: | |
Submitted: | 16:19:42 02-07-12 |
Completed: | 16:21:15 02-07-12 |
Elapsed: | 00 hrs 01 mins 33 secs |