Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACACB	32	hgsc.bcm.edu	37	12	109661640	109661640	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AOX1	316	hgsc.bcm.edu	37	2	201515874	201515874	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AP4B1	10717	hgsc.bcm.edu	37	1	114447239	114447239	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BRP44L	51660	hgsc.bcm.edu	37	6	166780320	166780320	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BZRAP1	9256	hgsc.bcm.edu	37	17	56386194	56386194	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C11orf21	29125	hgsc.bcm.edu	37	11	2323037	2323037	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C5	727	hgsc.bcm.edu	37	9	123742419	123742419	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C6orf114	85411	hgsc.bcm.edu	37	6	13470134	13470134	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1C	775	hgsc.bcm.edu	37	12	2719719	2719719	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC111	201973	hgsc.bcm.edu	37	4	185599419	185599419	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC45	90799	hgsc.bcm.edu	37	17	62506379	62506379	+	Silent	SNP	C	C	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDCA2	157313	hgsc.bcm.edu	37	8	25341648	25341648	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CKAP5	9793	hgsc.bcm.edu	37	11	46784271	46784271	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSGALNACT1	55790	hgsc.bcm.edu	37	8	19263531	19263531	+	Silent	SNP	A	A	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CUL9	23113	hgsc.bcm.edu	37	6	43174215	43174215	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYGB	114757	hgsc.bcm.edu	37	17	74527607	74527607	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DIP2B	57609	hgsc.bcm.edu	37	12	51138438	51138438	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXL3	26224	hgsc.bcm.edu	37	13	77581415	77581415	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FGFBP1	9982	hgsc.bcm.edu	37	4	15937909	15937909	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FGFR3	2261	hgsc.bcm.edu	37	4	1807791	1807791	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FPGS	2356	hgsc.bcm.edu	37	9	130566577	130566577	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FYCO1	79443	hgsc.bcm.edu	37	3	46009603	46009603	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GOLPH3	64083	hgsc.bcm.edu	37	5	32126658	32126658	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR108	56927	hgsc.bcm.edu	37	19	6731511	6731511	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR116	221395	hgsc.bcm.edu	37	6	46856140	46856140	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITPR3	3710	hgsc.bcm.edu	37	6	33635706	33635706	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KATNA1	11104	hgsc.bcm.edu	37	6	149918641	149918641	+	Splice_Site	SNP	A	A	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0586	9786	hgsc.bcm.edu	37	14	58954742	58954742	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LGI1	9211	hgsc.bcm.edu	37	10	95557392	95557392	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LINGO1	84894	hgsc.bcm.edu	37	15	77907534	77907534	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LMTK2	22853	hgsc.bcm.edu	37	7	97823769	97823769	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LPHN3	23284	hgsc.bcm.edu	37	4	62849248	62849248	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MED17	9440	hgsc.bcm.edu	37	11	93521254	93521254	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MSH4	4438	hgsc.bcm.edu	37	1	76282224	76282224	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTG1	92170	hgsc.bcm.edu	37	10	135209280	135209280	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYH14	79784	hgsc.bcm.edu	37	19	50813031	50813033	+	In_Frame_Del	DEL	CAG	CAG	-	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	CAG	CAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NF1	4763	hgsc.bcm.edu	37	17	29528456	29528456	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOTCH1	4851	hgsc.bcm.edu	37	9	139390656	139390656	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OLFML2B	25903	hgsc.bcm.edu	37	1	161953696	161953696	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHACTR3	116154	hgsc.bcm.edu	37	20	58322874	58322874	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHACTR4	65979	hgsc.bcm.edu	37	1	28785730	28785730	+	Frame_Shift_Del	DEL	A	A	-	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIK3C2G	5288	hgsc.bcm.edu	37	12	18435204	18435204	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POTED	317754	hgsc.bcm.edu	37	21	15013880	15013880	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PSMD7	5713	hgsc.bcm.edu	37	16	74334042	74334042	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPN11	5781	hgsc.bcm.edu	37	12	112893798	112893798	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PXN	5829	hgsc.bcm.edu	37	12	120650285	120650285	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RFWD2	64326	hgsc.bcm.edu	37	1	176132093	176132093	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RGS17	26575	hgsc.bcm.edu	37	6	153332893	153332894	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ROPN1L	83853	hgsc.bcm.edu	37	5	10461349	10461350	+	Frame_Shift_Del	DEL	GG	GG	-	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPS6KA6	27330	hgsc.bcm.edu	37	X	83320077	83320077	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RXRG	6258	hgsc.bcm.edu	37	1	165398156	165398156	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SAFB2	9667	hgsc.bcm.edu	37	19	5621374	5621374	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SFRS12	140890	hgsc.bcm.edu	37	5	65455094	65455094	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC12A2	6558	hgsc.bcm.edu	37	5	127477609	127477609	+	Nonsense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC7A2	6542	hgsc.bcm.edu	37	8	17401011	17401011	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMEK1	55671	hgsc.bcm.edu	37	14	91937228	91937228	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STOX2	56977	hgsc.bcm.edu	37	4	184930539	184930539	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
THNSL2	55258	hgsc.bcm.edu	37	2	88485426	88485426	+	Silent	SNP	G	G	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM196	256130	hgsc.bcm.edu	37	7	19765340	19765340	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TP53BP2	7159	hgsc.bcm.edu	37	1	223986157	223986157	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TUBAL3	79861	hgsc.bcm.edu	37	10	5442885	5442885	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UBR1	197131	hgsc.bcm.edu	37	15	43367229	43367229	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10191638	10191639	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR13	64743	hgsc.bcm.edu	37	X	48462751	48462751	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZEB2	9839	hgsc.bcm.edu	37	2	145155963	145155963	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
