Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AOX1	316	hgsc.bcm.edu	37	2	201474083	201474083	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BEST3	144453	hgsc.bcm.edu	37	12	70048909	70048909	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC150	284992	hgsc.bcm.edu	37	2	197530388	197530388	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHST10	9486	hgsc.bcm.edu	37	2	101009958	101009958	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNTN1	1272	hgsc.bcm.edu	37	12	41327530	41327530	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DCC	1630	hgsc.bcm.edu	37	18	50923805	50923805	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FCRL5	83416	hgsc.bcm.edu	37	1	157490914	157490914	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FER1L6	654463	hgsc.bcm.edu	37	8	124987507	124987507	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GABRB3	2562	hgsc.bcm.edu	37	15	26812770	26812770	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GATM	2628	hgsc.bcm.edu	37	15	45654362	45654362	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GCGR	2642	hgsc.bcm.edu	37	17	79770111	79770111	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HAPLN1	1404	hgsc.bcm.edu	37	5	82937598	82937598	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNMA1	3778	hgsc.bcm.edu	37	10	78669819	78669819	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0284	283638	hgsc.bcm.edu	37	14	105356097	105356097	+	Splice_Site	SNP	T	T	G	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRTAP10-8	386681	hgsc.bcm.edu	37	21	46032305	46032305	+	Silent	SNP	T	T	C	rs116689798	unknown	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LIAS	11019	hgsc.bcm.edu	37	4	39469138	39469138	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LPHN3	23284	hgsc.bcm.edu	37	4	62801740	62801740	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRP1	4035	hgsc.bcm.edu	37	12	57603869	57603869	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTHFD1L	25902	hgsc.bcm.edu	37	6	151358209	151358209	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC17	140453	hgsc.bcm.edu	37	7	100677944	100677944	+	Missense_Mutation	SNP	T	T	C	rs10264727	unknown	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC6	4588	hgsc.bcm.edu	37	11	1018366	1018366	+	Missense_Mutation	SNP	C	C	T	rs76741048	unknown	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYO1G	64005	hgsc.bcm.edu	37	7	45009718	45009718	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCOR1	9611	hgsc.bcm.edu	37	17	16068362	16068362	+	Silent	SNP	C	C	T	rs76375524	unknown	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOS1	4842	hgsc.bcm.edu	37	12	117662919	117662919	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR2T34	127068	hgsc.bcm.edu	37	1	248737348	248737348	+	Silent	SNP	G	G	A	rs61833442	unknown	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE4C	5143	hgsc.bcm.edu	37	19	18327573	18327573	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDSS2	57107	hgsc.bcm.edu	37	6	107655456	107655456	+	Frame_Shift_Del	DEL	C	C	-	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIKFYVE	200576	hgsc.bcm.edu	37	2	209190805	209190805	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLCB1	23236	hgsc.bcm.edu	37	20	8713925	8713925	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLXNB2	23654	hgsc.bcm.edu	37	22	50720489	50720489	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKAR1A	5573	hgsc.bcm.edu	37	17	66511547	66511547	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PROC	5624	hgsc.bcm.edu	37	2	128178989	128178989	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PSD4	23550	hgsc.bcm.edu	37	2	113940963	113940963	+	Silent	SNP	T	T	G	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBM19	9904	hgsc.bcm.edu	37	12	114380203	114380203	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
REL	5966	hgsc.bcm.edu	37	2	61147174	61147174	+	Splice_Site	SNP	A	A	C	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RNPS1	10921	hgsc.bcm.edu	37	16	2314218	2314218	+	Silent	SNP	G	G	C	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC25A13	10165	hgsc.bcm.edu	37	7	95799395	95799395	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMARCA5	8467	hgsc.bcm.edu	37	4	144464729	144464729	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPAM1	6677	hgsc.bcm.edu	37	7	123594531	123594531	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNE2	23224	hgsc.bcm.edu	37	14	64496675	64496675	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYT12	91683	hgsc.bcm.edu	37	11	66811136	66811136	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
THBS2	7058	hgsc.bcm.edu	37	6	169649025	169649025	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRMT61B	55006	hgsc.bcm.edu	37	2	29093128	29093128	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP18	11274	hgsc.bcm.edu	37	22	18655999	18655999	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF100	163227	hgsc.bcm.edu	37	19	21910451	21910451	+	Silent	SNP	A	A	C	rs35587380	unknown	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF791	163049	hgsc.bcm.edu	37	19	12739350	12739350	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
