GDAC_DataMergerPipeline Execution Log 7:04 PM Mon Jul 2, '12

Running as user: cgaadm_deadline

GDAC_CreateMergeDataFilesSDRF1 samplestamp file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.OV.2012_06_23__00_00_19.samplestamp.txt
GDAC_CreateMergeDataFilesSDRF1 annotationid protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
GDAC_CreateMergeDataFilesSDRF1 datapathsfile dependentsValues1477367685007903237.tsv
GDAC_DataMerger2 output OV.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
GDAC_DataMerger2 dataPaths dependentsValues6171402648062637615.tsv
Execution Times:
Submitted: 19:04:22 02-07-12
Completed:
Elapsed: 00 hrs 02 mins 10 secs

step 1. GDAC_CreateMergeDataFilesSDRF [id: 118946] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.OV.2012_06_23__00_00_19.samplestamp.txt
annotationid protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
sdrffilename
datapathsfile dependentsValues1477367685007903237.tsv
Output Files:
 dcc_archive.properties
 OV.merger.sdrf.txt
 .lsf.out
 dcc_archive_manifest.tsv
 stdout.txt
Execution Times:
Submitted: 19:04:22 02-07-12
Completed: 19:05:18 02-07-12
Elapsed: 00 hrs 00 mins 55 secs

step 2. GDAC_DataMerger [id: 118947] Merge a list of files into a single file. Validate that all the files have the same columns and row names.

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00481:4
output OV.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
dataPaths dependentsValues6171402648062637615.tsv
Output Files:
 OV.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
 .lsf.out
Execution Times:
Submitted: 19:04:22 02-07-12
Completed: 19:06:28 02-07-12
Elapsed: 00 hrs 02 mins 05 secs