| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_06_23__00_00_19.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues2524541756517074944.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues1383046024020045458.tsv |
| GDAC_MergeDataFiles2 output filename | STAD |
| GDAC_MergeDataFiles2 row_column | column |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data.data |
| Execution Times: | |
| Submitted: | 19:15:26 02-07-12 |
| Completed: | |
| Elapsed: | 01 hrs 10 mins 26 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 119115] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_06_23__00_00_19.samplestamp.txt |
| annotationid | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data |
| sdrffilename | |
| datapathsfile | dependentsValues2524541756517074944.tsv |
| Output Files: | |
| STAD.merger.sdrf.txt | |
| dcc_archive.properties | |
| .lsf.out | |
| dcc_archive_manifest.tsv | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 19:15:26 02-07-12 |
| Completed: | 19:21:49 02-07-12 |
| Elapsed: | 00 hrs 06 mins 22 secs |
step 2. GDAC_MergeDataFiles [id: 119116] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues1383046024020045458.tsv |
| output filename | STAD |
| row_column | column |
| num_headers | 1 |
| filetype | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data.data |
| Output Files: | |
| STAD.rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data.data.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 19:15:26 02-07-12 |
| Completed: | 20:25:50 02-07-12 |
| Elapsed: | 01 hrs 10 mins 24 secs |