Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ABCA4	24	genome.wustl.edu	37	1	94574255	94574255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.R107Q	0.206	102	0%	87	13.8%	0	-	possibly_damaging(0.759)	tolerated(0.2)	neutral(0.330)	NULL
FLAD1	80308	genome.wustl.edu	37	1	154956531	154956531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025207.4	+1	reviewed	p.E121K	1.000	40	0%	40	72.5%	25	72%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MoCF_biosynth,superfamily_Molybdenum cofactor biosynthesis proteins
AHCTF1	25909	genome.wustl.edu	37	1	247013640	247013640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.D1890N	0.074	282	0.4%	432	15.5%	5	0%	possibly_damaging(0.489)	deleterious(0.01)	deleterious(0.568)	NULL
CTNNA2	1496	genome.wustl.edu	37	2	80831288	80831288	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004389.3	+1	validated	p.R760P	1.000	210	0%	207	19.3%	27	40.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
RGPD4	285190	genome.wustl.edu	37	2	108487515	108487515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182588.2	+1	validated	p.G1019S	0.028	1050	0%	1047	61.1%	4	0%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112625610	112625610	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022662.2	-1	validated	p.C225	1.000	120	0%	192	17.7%	2	0%	-	-	-	NULL
LRP1B	53353	genome.wustl.edu	37	2	141143523	141143523	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.P3490	0.994	221	0%	250	20.8%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
AGPS	8540	genome.wustl.edu	37	2	178386078	178386078	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003659.3	+1	reviewed	p.T593	0.998	190	0%	234	58.1%	19	52.6%	-	-	-	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain
TTC30A	92104	genome.wustl.edu	37	2	178481940	178481940	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152275.3	-1	validated	p.S497T	1.000	429	0%	492	16.5%	2	0%	benign(0.017)	tolerated(0.47)	neutral(0.011)	superfamily_SSF48452
NEUROD1	4760	genome.wustl.edu	37	2	182543157	182543157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002500.2	-1	reviewed	p.R144L	1.000	143	0%	227	18.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
TNS1	7145	genome.wustl.edu	37	2	218712394	218712394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.P824L	0.860	63	0%	126	22.2%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233715066	233715066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.S1281I	1.000	120	0%	191	17.8%	13	7.6%	unknown(0)	deleterious(0.04)	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	A	rs121913399		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.G34R	1.000	75	0%	97	34%	42	26.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR52	55779	genome.wustl.edu	37	3	113114687	113114687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018338.3	-1	validated	p.F600L	1.000	190	0%	225	24%	1	0%	possibly_damaging(0.719)	deleterious(0)	deleterious(0.705)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
MBD4	8930	genome.wustl.edu	37	3	129151968	129151970	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003925.1	-1	reviewed	p.L511in_frame_del	1.000:0.997:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_HhH-GPD,superfamily_DNA-glycosylase
AMOTL2	51421	genome.wustl.edu	37	3	134079139	134079139	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016201.2	-1	reviewed	p.A564	0.274	31	0%	43	30.2%	1	0%	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.Q546P	1.000	100	0%	89	50.6%	3	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
NPY5R	4889	genome.wustl.edu	37	4	164271747	164271747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006174.2	+1	provisional	p.M108V	1.000	522	0%	291	35.7%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_7tm_1,superfamily_SSF81321
DDX60	55601	genome.wustl.edu	37	4	169195233	169195233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017631.5	-1	validated	p.R769Q	1.000	196	0%	157	35.7%	0	-	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
IRX1	79192	genome.wustl.edu	37	5	3599446	3599446	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024337.3	+1	validated	p.P128	0.633	17	0.000	9	0.444	1	0%	-	-	-	HMMSmart_HOX,superfamily_Homeodomain_like
ENSG00000248269	0	genome.wustl.edu	37	5	140812819	140812819	+	RNA	SNP	G	G	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513512	-1	known	NULL	0.001	22	0%	32	28.1%	0	-	-	-	-	-
DOCK2	1794	genome.wustl.edu	37	5	169122806	169122806	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004946.2	+1	validated	e10-1	1.000	263	0%	295	25.4%	0	-	-	-	-	-
CDKAL1	54901	genome.wustl.edu	37	6	21231097	21231097	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017774.3	+1	reviewed	p.G523R	0.001	175	0%	127	42.5%	0	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	NULL
BTN2A1	11120	genome.wustl.edu	37	6	26468468	26468468	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007049.2	+1	reviewed	p.E425	0.002	213	0%	161	32.9%	16	75%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
STK38	11329	genome.wustl.edu	37	6	36467715	36467715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007271.2	-1	provisional	p.Q296L	1.000	233	0%	201	34.8%	3	0%	probably_damaging(0.971)	tolerated(0.06)	deleterious(0.736)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRFN2	57497	genome.wustl.edu	37	6	40399938	40399938	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020737.1	-1	provisional	p.A305	0.912	26	0%	28	53.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HINT3	135114	genome.wustl.edu	37	6	126288115	126288115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138571.4	+1	validated	p.N95S	1.000	293	0%	247	29.6%	0	-	benign(0.032)	tolerated(0.8)	neutral(0.002)	HMMPfam_HIT,superfamily_His_triad-like_motif
ESR1	2099	genome.wustl.edu	37	6	152419923	152419923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000125.3	+1	reviewed	p.Y537C	0.999	68	0%	61	42.6%	1	100%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
TRPV6	55503	genome.wustl.edu	37	7	142570138	142570138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018646.2	-1	validated	p.R628C	1.000	16	0%	28	28.6%	0	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
LOC100129848	100129848	genome.wustl.edu	37	8	28196832	28196832	+	Missense_Mutation	SNP	C	C	T	rs189594057	by1000genomes	TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717438.2	-1	model	p.G59S	0.058	38	0%	44	36.4%	1	0%	-	-	-	NULL
FZD3	7976	genome.wustl.edu	37	8	28385331	28385331	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017412.2	+1	reviewed	p.I352F	1.000	412	0%	324	27.5%	3	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Frizzled
TRPA1	8989	genome.wustl.edu	37	8	72936072	72936072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007332.2	-1	reviewed	p.M1042I	0.003	355	0%	275	24.7%	21	0%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
ZNF252	286101	genome.wustl.edu	37	8	146202538	146202538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427606	-1	known	p.I458T	0.001	65	0%	52	25%	5	0%	benign(0.005)	tolerated(0.57)	neutral(0.006)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANGPTL2	23452	genome.wustl.edu	37	9	129870385	129870385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012098.2	-1	reviewed	p.S209L	0.015	12	0%	20	75%	34	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
MKI67	4288	genome.wustl.edu	37	10	129903108	129903108	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.T2332	0.000	548	0%	626	22.5%	0	-	-	-	-	NULL
CCKBR	887	genome.wustl.edu	37	11	6291529	6291529	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176875.2	+1	reviewed	p.C205	0.424	99	0%	125	40%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ABTB2	25841	genome.wustl.edu	37	11	34184222	34184222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145804.1	-1	provisional	p.V521M	0.002	19	0%	18	50%	0	-	benign(0.116)	tolerated(0.12)	neutral(0.270)	superfamily_ANK
EHF	26298	genome.wustl.edu	37	11	34680419	34680419	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012153.4	+1	validated	p.R282G	1.000	121	0%	97	27.8%	20	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
ANO1	55107	genome.wustl.edu	37	11	69957845	69957845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018043.5	+1	validated	p.A278P	0.957	86	0%	80	27.5%	4	50%	benign(0.067)	tolerated(0.33)	neutral(0.029)	NULL
AASDHPPT	60496	genome.wustl.edu	37	11	105962101	105962101	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015423.2	+1	reviewed	p.R197P	0.837	277	0%	158	32.9%	5	20%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	superfamily_4-PPT_transf
SORL1	6653	genome.wustl.edu	37	11	121414357	121414357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003105.4	+1	reviewed	p.V596I	0.997	202	0%	170	34.1%	0	-	benign(0.008)	tolerated(0.5)	neutral(0.010)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
KCNJ5	3762	genome.wustl.edu	37	11	128781257	128781257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000890.3	+1	reviewed	p.R30H	1.000	59	0%	52	51.9%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
B4GALNT3	283358	genome.wustl.edu	37	12	670530	670530	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173593.3	+1	validated	p.D970	0.977	14	0%	31	48.4%	8	25%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
ERC1	23085	genome.wustl.edu	37	12	1346068	1346068	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178040.2	+1	reviewed	p.Q829*	0.998	131	0%	178	32.6%	2	0%	-	-	-	HMMPfam_Cast
OVCH1	341350	genome.wustl.edu	37	12	29629154	29629154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.E486Q	0.225	451	0%	411	51.3%	0	-	probably_damaging(0.991)	tolerated(0.54)	neutral(0.452)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DICER1	23405	genome.wustl.edu	37	14	95569702	95569702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.S1344L	1.000	153	0%	83	61.4%	2	0%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
VPS13C	54832	genome.wustl.edu	37	15	62312689	62312690	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.L224fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
C16orf89	146556	genome.wustl.edu	37	16	5094397	5094397	+	Silent	SNP	T	T	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098514.1	-1	validated	p.A384	0.000	34	0%	46	37%	44	34%	-	-	-	NULL
ERCC4	2072	genome.wustl.edu	37	16	14029422	14029422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005236.2	+1	reviewed	p.G545R	0.998	204	0.5%	151	37.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ACSM3	6296	genome.wustl.edu	37	16	20793081	20793081	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005622.3	+1	validated	p.R331*	1.000	106	0.9%	69	10.1%	2	0%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
CDH8	1006	genome.wustl.edu	37	16	61747771	61747771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001796.2	-1	reviewed	p.P543L	1.000	144	0%	64	46.9%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
GLOD4	51031	genome.wustl.edu	37	17	679069	679069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016080.3	-1	validated	p.E118K	0.941	289	0%	332	36.4%	10	20%	benign(0.003)	tolerated(0.87)	neutral(0.001)	NULL
BPTF	2186	genome.wustl.edu	37	17	65914842	65914842	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182641.3	+1	reviewed	p.Q1772H	1.000	120	0%	89	30.3%	1	0%	probably_damaging(0.981)	tolerated(0.24)	neutral(0.463)	NULL
FHOD3	80206	genome.wustl.edu	37	18	34298471	34298471	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025135.2	+1	validated	p.S895	1.000	401	0%	304	40.8%	0	-	-	-	-	superfamily_FH2_actin_bd
DSEL	92126	genome.wustl.edu	37	18	65181772	65181772	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032160.2	-1	validated	p.S35C	1.000	139	0%	112	37.5%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
FCGBP	8857	genome.wustl.edu	37	19	40433776	40433776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.A165T	0.000	110	0%	108	77.8%	0	-	possibly_damaging(0.915)	tolerated(0.22)	neutral(0.408)	NULL
KCNQ2	3785	genome.wustl.edu	37	20	62076675	62076675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172107.2	-1	reviewed	p.R144W	0.991	13	0%	11	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
IGLV8-61	28774	genome.wustl.edu	37	22	22453403	22453403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390283	+1	known	p.S50F	0.028	156	0%	134	37.3%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SREBF2	6721	genome.wustl.edu	37	22	42294733	42294733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004599.2	+1	reviewed	p.R896C	0.815	9	0.000	17	0.235	19	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MORC4	79710	genome.wustl.edu	37	X	106219851	106219852	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A5-A0GN-01A-11W-A062-09	TCGA-A5-A0GN-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024657.4	-1	reviewed	p.Y373fs	0.999:0.992	-	-	-	-	-	-	-	-	-	NULL
