Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ERI3	79033	genome.wustl.edu	37	1	44804990	44804990	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433471	-1	known	e3-2	1.000	352	0%	278	18.7%	4	50%	-	-	-	-
RNF220	55182	genome.wustl.edu	37	1	44877906	44877906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018150.2	+1	validated	p.R46P	1.000	584	0%	349	15.8%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
KTI12	112970	genome.wustl.edu	37	1	52498437	52498437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138417.2	-1	validated	p.P333T	1.000	185	0%	105	17.1%	9	33.3%	benign(0.003)	tolerated(0.28)	neutral(0.032)	HMMPfam_KTI12
GCLM	2730	genome.wustl.edu	37	1	94354609	94354609	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002061.2	-1	reviewed	p.V254	0.995	145	0%	116	11.2%	10	40%	-	-	-	superfamily_NAD(P)-linked oxidoreductase
FCRL5	83416	genome.wustl.edu	37	1	157488247	157488247	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031281.2	-1	validated	p.R928	0.000	175	0%	132	11.4%	1	0%	-	-	-	NULL
FCRL3	115352	genome.wustl.edu	37	1	157668177	157668177	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052939.3	-1	reviewed	p.P99A	0.000	298	0%	180	28.3%	0	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	superfamily_Immunoglobulin
OR6K3	391114	genome.wustl.edu	37	1	158687589	158687589	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005327.2	-1	validated	p.S122*	0.001	545	0%	550	17.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ATP1A2	477	genome.wustl.edu	37	1	160099131	160099131	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000702.3	+1	reviewed	p.M468L	1.000	654	0%	456	23.5%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
DUSP12	11266	genome.wustl.edu	37	1	161722936	161722936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007240.1	+1	reviewed	p.K249R	1.000	439	0%	351	27.9%	14	35.7%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
C1orf74	148304	genome.wustl.edu	37	1	209956962	209956962	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152485.2	-1	predicted	p.L6	0.082	323	0%	206	18.9%	0	-	-	-	-	PatternScan_TONB_DEPENDENT_REC_1
PROX1	5629	genome.wustl.edu	37	1	214170439	214170439	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002763.3	+1	provisional	p.N187K	1.000	316	0%	241	14.5%	0	-	benign(0.111)	tolerated(0.84)	neutral(0.009)	HMMPfam_Prox1
BROX	148362	genome.wustl.edu	37	1	222906027	222906027	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144695.2	+1	validated	p.Q403*	1.000	192	0%	163	11%	8	12.5%	-	-	-	NULL
OR2T34	127068	genome.wustl.edu	37	1	248737122	248737122	+	Silent	SNP	T	T	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001821.1	-1	provisional	p.R313	0.000	389	0%	345	9.9%	0	-	-	-	-	superfamily_SSF81321
NCOA1	8648	genome.wustl.edu	37	2	24952429	24952429	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003743.4	+1	reviewed	p.L982	0.783	386	0%	332	25.6%	6	0%	-	-	-	NULL
CCDC75	253635	genome.wustl.edu	37	2	37319061	37319061	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174931.2	+1	validated	p.K107*	0.994	82	0%	65	33.8%	0	-	-	-	-	HMMPfam_G-patch,HMMSmart_G_patch
VRK2	7444	genome.wustl.edu	37	2	58386671	58386671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130480.1	+1	reviewed	p.V457A	0.000	208	0%	174	17.8%	28	32.1%	benign(0)	tolerated(1)	-	NULL
PKP4	8502	genome.wustl.edu	37	2	159481935	159481935	+	Silent	SNP	G	G	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.L383	0.997	82	0%	85	18.8%	10	40%	-	-	-	NULL
DYTN	391475	genome.wustl.edu	37	2	207570586	207570586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093730.1	-1	provisional	p.G103V	0.014	89	0%	69	15.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_efhand_1,superfamily_SSF47473
METTL21A	151194	genome.wustl.edu	37	2	208489082	208489082	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127395.1	-1	validated	p.Y6*	0.165	134	0%	100	26%	15	66.6%	-	-	-	NULL
CXCR7	57007	genome.wustl.edu	37	2	237490163	237490163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020311.2	+1	reviewed	p.T352M	0.164	217	0%	96	15.6%	4	0%	benign(0.011)	deleterious(0.01)	neutral(0.406)	NULL
CTDSPL	10217	genome.wustl.edu	37	3	38006134	38006134	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008392.1	+1	validated	p.D114H	1.000	255	0%	125	21.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NIF,HMMSmart_SM00577,superfamily_HAD-like
ZNF619	285267	genome.wustl.edu	37	3	40528792	40528792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145082.2	+1	validated	p.E304G	0.782	516	0%	282	14.5%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HTR1F	3355	genome.wustl.edu	37	3	88040328	88040328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000866.3	+1	validated	p.M143I	1.000	225	0%	218	12.4%	0	-	benign(0.07)	deleterious(0.01)	neutral(0.411)	HMMPfam_7tm_1,superfamily_SSF81321
SERPINI2	5276	genome.wustl.edu	37	3	167189414	167189414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006217.3	-1	reviewed	p.Q70R	1.000	398	0%	315	12.1%	0	-	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SENP5	205564	genome.wustl.edu	37	3	196613169	196613169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152699.4	+1	validated	p.H373Y	0.989	178	0%	151	15.2%	7	28.5%	possibly_damaging(0.7)	deleterious(0)	deleterious(0.696)	NULL
TADA2B	93624	genome.wustl.edu	37	4	7056281	7056281	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152293.2	+1	validated	p.L255	1.000	92	0%	107	11.2%	11	0%	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32074264	32074264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.E1018K	0.626	211	0%	196	12.8%	0	-	possibly_damaging(0.881)	deleterious(0)	deleterious(0.788)	NULL
CARD6	84674	genome.wustl.edu	37	5	40843443	40843443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.T158R	0.000	148	0%	150	15.3%	0	-	possibly_damaging(0.858)	tolerated(0.11)	deleterious(0.603)	NULL
ERBB2IP	55914	genome.wustl.edu	37	5	65349926	65349926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018695.2	+1	reviewed	p.F927Y	1.000	497	0%	322	22%	5	60%	benign(0.011)	tolerated(0.56)	neutral(0.007)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79030413	79030413	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.V1942G	0.000	294	0%	164	15.9%	0	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	NULL
PCDHA11	56138	genome.wustl.edu	37	5	140250304	140250304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018902.3	+1	reviewed	p.A539V	0.951	106	0.9%	53	45.3%	0	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140769455	140769455	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.E668D	0.897	175	0%	82	17.1%	0	-	possibly_damaging(0.833)	tolerated(0.28)	neutral(0.349)	HMMSmart_SM00112
KIAA0141	9812	genome.wustl.edu	37	5	141307805	141307805	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142603.1	+1	validated	p.C118*	1.000	136	0%	55	18.2%	9	0%	-	-	-	NULL
HIST1H2BI	8346	genome.wustl.edu	37	6	26273432	26273432	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003525.2	+1	reviewed	p.E77Q	1.000	479	0%	378	12.2%	1	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold
LAMA2	3908	genome.wustl.edu	37	6	129691085	129691085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.E1637K	1.000	172	0%	107	26.2%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I
ENPP3	5169	genome.wustl.edu	37	6	132059248	132059248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005021.3	+1	reviewed	p.P749T	1.000	110	0%	132	11.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_NUC,superfamily_SSF54060
SGK1	6446	genome.wustl.edu	37	6	134583250	134583250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143676.1	-1	reviewed	p.D36Y	1.000	468	0%	482	27.8%	0	-	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
TIAM2	26230	genome.wustl.edu	37	6	155450463	155450463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012454.3	+1	reviewed	p.H36D	0.991	177	0%	144	27.1%	0	-	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	NULL
LPA	4018	genome.wustl.edu	37	6	160977164	160977164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005577.2	-1	reviewed	p.Q1622H	0.008	718	0%	608	15.6%	0	-	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
LMOD2	442721	genome.wustl.edu	37	7	123303077	123303077	+	Missense_Mutation	SNP	G	G	T	rs78874923		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207163.1	+1	validated	p.K479N	1.000	61	0%	42	11.9%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
BRAF	673	genome.wustl.edu	37	7	140481423	140481423	+	Missense_Mutation	SNP	C	C	T	rs180177032		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004333.4	-1	reviewed	p.R462K	1.000	239	0%	192	14.1%	5	0%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ASAH1	427	genome.wustl.edu	37	8	17919892	17919892	+	Missense_Mutation	SNP	G	G	C	rs137853597		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004315.4	-1	reviewed	p.L198V	0.979	379	0%	177	16.9%	24	54.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CBAH
ASPH	444	genome.wustl.edu	37	8	62489361	62489361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004318.3	-1	reviewed	p.Q373H	0.999	249	0%	143	22.4%	4	25%	unknown(0)	tolerated(0.07)	-	superfamily_SSF48452
SNX31	169166	genome.wustl.edu	37	8	101625265	101625265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152628.3	-1	validated	p.G161S	0.984	190	0%	180	23.9%	0	-	benign(0.006)	tolerated(1)	-	NULL
RIMS2	9699	genome.wustl.edu	37	8	104898214	104898214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.S463G	1.000	305	0%	372	12.9%	0	-	benign(0.047)	tolerated(0.5)	neutral(0.013)	NULL
ZNF252	286101	genome.wustl.edu	37	8	146201974	146201974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355436	-1	known	p.A625V	0.048	75	0%	60	26.7%	1	0%	benign(0.102)	tolerated(0.34)	neutral(0.031)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CDK5RAP2	55755	genome.wustl.edu	37	9	123280899	123280899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.L373V	0.055	284	0%	189	15.9%	1	0%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	NULL
GSN	2934	genome.wustl.edu	37	9	124091587	124091587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000177.4	+1	reviewed	p.W704C	1.000	89	0%	63	23.8%	124	8.8%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
PRPF18	8559	genome.wustl.edu	37	10	13642284	13642284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003675.3	+1	reviewed	p.S62L	0.977	219	0%	241	15.4%	4	50%	benign(0.014)	tolerated(0.12)	neutral(0.261)	NULL
PTCHD3	374308	genome.wustl.edu	37	10	27702859	27702859	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.I107	0.000	53	0%	43	44.2%	0	-	-	-	-	NULL
ASAH2C	653365	genome.wustl.edu	37	10	48025352	48025352	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426610	-1	known	p.Y296	1.000	173	0%	174	27.6%	0	-	-	-	-	HMMPfam_Ceramidase_alk
TYSND1	219743	genome.wustl.edu	37	10	71903691	71903691	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173555.2	-1	validated	p.Q402*	0.997	78	0%	56	12.5%	5	20%	-	-	-	superfamily_Trypsin-like serine proteases
HTRA1	5654	genome.wustl.edu	37	10	124266241	124266241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002775.4	+1	reviewed	p.S271L	0.994	95	0%	62	16.1%	63	7.9%	possibly_damaging(0.483)	deleterious(0.01)	deleterious(0.566)	HMMPfam_Trypsin,superfamily_Pept_Ser_Cys
SPRYD5	84767	genome.wustl.edu	37	11	55655739	55655739	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032681.3	+1	validated	e3+1	0.146	246	0%	204	15.2%	0	-	-	-	-	-
MS4A2	2206	genome.wustl.edu	37	11	59856269	59856269	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000139.3	+1	reviewed	p.L11V	0.027	95	0%	67	11.9%	0	-	benign(0.224)	-	-	NULL
TYR	7299	genome.wustl.edu	37	11	88911536	88911536	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000372.4	+1	reviewed	p.T139P	0.622	463	0%	424	25.2%	0	-	benign(0.164)	deleterious(0.01)	neutral(0.421)	superfamily_Di-copper centre-containing domain
KLRD1	3824	genome.wustl.edu	37	12	10462283	10462283	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114396.1	+1	reviewed	p.Q53H	0.378	87	0%	59	30.5%	2	0%	benign(0.038)	tolerated(0.18)	neutral(0.058)	NULL
ATP2B1	490	genome.wustl.edu	37	12	90020377	90020377	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001682.2	-1	reviewed	p.G328A	1.000	227	0%	162	25.9%	0	-	benign(0.336)	tolerated(0.14)	neutral(0.355)	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
CDK17	5128	genome.wustl.edu	37	12	96692683	96692683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002595.3	-1	reviewed	p.H227N	1.000	205	0%	128	15.6%	0	-	possibly_damaging(0.943)	tolerated(0.11)	deleterious(0.659)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MIPEP	4285	genome.wustl.edu	37	13	24453490	24453490	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005932.2	-1	reviewed	p.L152	1.000	266	0%	137	20.4%	2	50%	-	-	-	superfamily_SSF55486
MPP5	64398	genome.wustl.edu	37	14	67769232	67769232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022474.2	+1	validated	p.E303Q	1.000	190	0%	106	14.2%	2	50%	benign(0.132)	tolerated(0.08)	neutral(0.311)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
WDR25	79446	genome.wustl.edu	37	14	100992272	100992272	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024515.4	+1	validated	p.S389	0.012	102	0%	92	18.5%	12	25%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
BAG5	9529	genome.wustl.edu	37	14	104026644	104026644	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015049.1	-1	reviewed	p.M327I	1.000	193	0%	182	13.7%	4	50%	benign(0.002)	tolerated(0.12)	neutral(0.261)	HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain
BTBD6	90135	genome.wustl.edu	37	14	105716665	105716665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033271.2	+1	validated	p.G297W	1.000	38	0%	26	23.1%	97	45.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHR
STRC	161497	genome.wustl.edu	37	15	43893087	43893087	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153700.2	-1	reviewed	p.I1609	1.000	364	0%	263	23.2%	0	-	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	43896884	43896884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153700.2	-1	reviewed	p.E1364G	1.000	212	0%	161	19.9%	0	-	benign(0.183)	deleterious(0.03)	neutral(0.382)	NULL
HERC1	8925	genome.wustl.edu	37	15	63932428	63932428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.N3942D	0.995	374	0%	334	15.3%	2	0%	benign(0)	-	-	NULL
IGDCC3	9543	genome.wustl.edu	37	15	65621802	65621802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004884.3	-1	validated	p.R711C	0.030	110	0%	70	25.7%	0	-	benign(0.007)	deleterious(0.01)	neutral(0.406)	NULL
CHRNB4	1143	genome.wustl.edu	37	15	78922152	78922152	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000750.3	-1	validated	p.Q165H	1.000	377	0%	350	16.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL
NTRK3	4916	genome.wustl.edu	37	15	88679176	88679176	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012338.1	-1	reviewed	p.E287D	1.000	207	0%	121	13.2%	1	0%	possibly_damaging(0.88)	tolerated(0.09)	deleterious(0.639)	HMMSmart_SM00409,superfamily_Immunoglobulin
MYH11	4629	genome.wustl.edu	37	16	15829343	15829343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.S1136L	0.999	253	0%	137	21.2%	44	0%	possibly_damaging(0.508)	deleterious(0.01)	deleterious(0.576)	HMMPfam_Myosin_tail_1
RNF167	26001	genome.wustl.edu	37	17	4848217	4848217	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015528.1	+1	provisional	p.S320C	1.000	530	0%	373	10.5%	309	18.7%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
TP53	7157	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R273H	0.864	232	0%	122	42.6%	26	73%	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	superfamily_p53-like transcription factors,HMMPfam_P53
ENSG00000251537	0	genome.wustl.edu	37	17	15499894	15499894	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455584	-1	known	p.T871I	1.000	159	0%	82	31.7%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
LRRC37B	114659	genome.wustl.edu	37	17	30362658	30362659	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052888.2	+1	validated	p.L708fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_L domain-like
NLE1	54475	genome.wustl.edu	37	17	33466306	33466306	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018096.3	-1	validated	p.T136	1.000	78	0%	45	48.9%	7	71.4%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
ORMDL3	94103	genome.wustl.edu	37	17	38078867	38078867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139280.1	-1	provisional	p.S133N	0.974	185	0%	111	58.6%	61	77%	benign(0.054)	deleterious(0.02)	neutral(0.387)	HMMPfam_ORMDL
JUP	3728	genome.wustl.edu	37	17	39919534	39919534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002230.2	-1	reviewed	p.L400V	1.000	144	0%	89	27%	157	9.5%	probably_damaging(0.986)	tolerated(0.06)	deleterious(0.757)	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
PRKAR1A	5573	genome.wustl.edu	37	17	66526520	66526520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002734.3	+1	reviewed	p.L359R	1.000	429	0%	340	50%	101	77.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
C18orf8	29919	genome.wustl.edu	37	18	21104433	21104433	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013326.3	+1	validated	p.I349	1.000	219	0%	162	18.5%	9	11.1%	-	-	-	NULL
ZNF823	55552	genome.wustl.edu	37	19	11833550	11833550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080493.2	-1	validated	p.E267K	0.095	379	0%	351	12.3%	5	20%	benign(0.002)	tolerated(0.3)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PLEKHG2	64857	genome.wustl.edu	37	19	39909463	39909463	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000205135	+1	known	p.S288F	0.346	798	0%	789	11.8%	7	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
BCL2L12	83596	genome.wustl.edu	37	19	50172152	50172152	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138639.1	+1	reviewed	p.E183Q	1.000	76	0%	63	11.1%	65	10.7%	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	NULL
FAM210B	116151	genome.wustl.edu	37	20	54940226	54940239	+	Frame_Shift_Del	DEL	AAAGATTTTTCAAG	AAAGATTTTTCAAG	-	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	AAAGATTTTTCAAG	AAAGATTTTTCAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080821.2	+1	validated	p.K91fs	0.989:0.997:0.997:0.990:0.960:0.959:0.045:0.997:1.000:0.999:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1279
HIC2	23119	genome.wustl.edu	37	22	21799472	21799472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015094.2	+1	validated	p.I96M	1.000	141	0%	67	10.4%	3	33.3%	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
PARVB	29780	genome.wustl.edu	37	22	44536004	44536004	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003828.1	+1	validated	p.E264	1.000	289	0%	155	29.7%	46	50%	-	-	-	superfamily_Calponin-homology
ENSG00000211459	0	genome.wustl.edu	37	MT	734	734	+	RNA	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389680	+1	known	NULL	NULL	58	0%	35	28.6%	4375	40.5%	-	-	-	-
ENSG00000198888	0	genome.wustl.edu	37	MT	3935	3935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361390	+1	known	p.G210D	NULL	82	0%	37	51.4%	8042	45.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_2
ENSG00000198888	0	genome.wustl.edu	37	MT	4153	4153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361390	+1	known	p.D283N	NULL	67	0%	40	82.5%	8021	95.8%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_NADHdh
ARSH	347527	genome.wustl.edu	37	X	2924728	2924728	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011719.1	+1	validated	p.Y25	0.712	254	0%	183	17.5%	0	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ZNF674	641339	genome.wustl.edu	37	X	46359560	46359560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039891.2	-1	validated	p.Q488H	0.995	453	0.2%	350	11.7%	0	-	probably_damaging(0.953)	tolerated(0.15)	deleterious(0.637)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PORCN	64840	genome.wustl.edu	37	X	48370811	48370811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000470275	+1	known	p.L162V	1.000	27	0%	29	13.8%	19	0%	-	-	-	NULL
NOX1	27035	genome.wustl.edu	37	X	100117462	100117462	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007052.4	-1	reviewed	p.R197P	0.984	740	0%	597	14.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ferric_reduct
PASD1	139135	genome.wustl.edu	37	X	150840204	150840204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173493.2	+1	reviewed	p.L464F	0.000	450	0%	311	13.8%	0	-	benign(0.04)	tolerated(0.53)	neutral(0.010)	NULL
GABRE	2564	genome.wustl.edu	37	X	151123939	151123939	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004961.3	-1	reviewed	p.I346	0.984	420	0%	350	11.4%	1	0%	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
NSDHL	50814	genome.wustl.edu	37	X	152034405	152034405	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LI-01A-11W-A062-09	TCGA-AP-A0LI-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129765.1	+1	reviewed	p.T196S	0.004	243	0%	182	25.3%	30	0%	benign(0.025)	deleterious(0.01)	neutral(0.407)	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
