Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ENSG00000245549	0	genome.wustl.edu	37	1	16950404	16950404	+	RNA	SNP	C	C	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501442	+1	novel	NULL	0.979	42	2.4%	30	30%	-	-	-	-	-	-
COL11A1	1301	genome.wustl.edu	37	1	103412454	103412454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.R1088H	1.000	13	0%	23	30.4%	-	-	unknown(0)	deleterious(0)	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152191477	152191477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.H876Q	0.001	85	0%	83	28.9%	-	-	unknown(0)	-	-	NULL
NEK7	140609	genome.wustl.edu	37	1	198222179	198222179	+	Silent	SNP	C	C	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133494.2	+1	validated	p.R23	1.000	31	0%	46	43.5%	-	-	-	-	-	superfamily_Kinase_like
PROX1	5629	genome.wustl.edu	37	1	214178606	214178606	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002763.3	+1	provisional	p.S608	0.201	56	0%	58	41.4%	-	-	-	-	-	HMMPfam_Prox1,superfamily_Homeodomain_like
FMN2	56776	genome.wustl.edu	37	1	240255569	240255571	+	In_Frame_Del	DEL	GGC	GGC	-	rs140531536	byCluster;by1000genomes	TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	GGC	GGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.G57in_frame_del	0.957:0.122:0.017	-	-	-	-	-	-	-	-	-	NULL
ASXL2	55252	genome.wustl.edu	37	2	25973229	25973229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018263.4	-1	validated	p.P399L	1.000	69	0%	136	39%	-	-	unknown(0)	tolerated(0.41)	-	NULL
PPP1R21	129285	genome.wustl.edu	37	2	48667952	48667954	+	RNA	DEL	GCG	GCG	-	rs71995941		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	GCG	GCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024188.1	+1	validated	NULL	0.983:0.995:1.000	-	-	-	-	-	-	-	-	-	-
SLC39A10	57181	genome.wustl.edu	37	2	196545296	196545296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.R177H	0.088	22	0%	31	19.4%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
ATG4B	23192	genome.wustl.edu	37	2	242592988	242592988	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013325.4	+1	reviewed	p.I82M	1.000	43	0%	32	37.5%	-	-	benign(0.024)	tolerated(0.79)	neutral(0.002)	HMMPfam_Peptidase_C54
SCN11A	11280	genome.wustl.edu	37	3	38913124	38913124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014139.2	-1	validated	p.V1191I	1.000	58	0%	55	52.7%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
BSN	8927	genome.wustl.edu	37	3	49690325	49690325	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.A1112	0.174	23	0%	13	30.8%	-	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.H1047R	1.000	45	0%	78	61.5%	-	-	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
PRDM9	56979	genome.wustl.edu	37	5	23521146	23521146	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.A122	0.000	70	0%	93	29%	-	-	-	-	-	NULL
OR9A2	135924	genome.wustl.edu	37	7	142723328	142723328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001658.1	-1	provisional	p.R298G	0.000	32	0%	43	41.9%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_Family A G protein-coupled receptor-like
DNM1L	10059	genome.wustl.edu	37	12	32860333	32860333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012062.3	+1	reviewed	p.H95Y	1.000	36	0%	77	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynamin_N,HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases
SCN8A	6334	genome.wustl.edu	37	12	52099316	52099316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.Q417R	1.000	135	0%	144	32.6%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	superfamily_Voltage-gated potassium channels
GPC6	10082	genome.wustl.edu	37	13	94680088	94680088	+	Missense_Mutation	SNP	G	G	A	rs192508779	by1000genomes	TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005708.3	+1	reviewed	p.V273I	1.000	51	0%	58	44.8%	-	-	possibly_damaging(0.68)	tolerated(0.16)	neutral(0.302)	HMMPfam_Glypican,PatternScan_GLYPICAN
NDN	4692	genome.wustl.edu	37	15	23931977	23931977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002487.2	-1	reviewed	p.G130S	0.917	29	0%	34	47.1%	-	-	possibly_damaging(0.947)	tolerated(0.1)	deleterious(0.677)	HMMPfam_MAGE
ISLR2	57611	genome.wustl.edu	37	15	74425447	74425447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130136.1	+1	validated	p.D118N	1.000	25	0%	27	29.6%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_LRR_1,superfamily_SSF52058
RHOT2	89941	genome.wustl.edu	37	16	722303	722303	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138769.1	+1	provisional	p.S415	0.010	26	0%	29	34.5%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TP53	7157	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R273H	0.864	66	0%	69	62.3%	-	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	superfamily_p53-like transcription factors,HMMPfam_P53
NSRP1	84081	genome.wustl.edu	37	17	28511670	28511670	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032141.2	+1	validated	p.N219H	0.938	21	0%	51	43.1%	-	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
P2RY11	5032	genome.wustl.edu	37	19	10224576	10224576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002566.4	+1	reviewed	p.R96L	0.297	28	0%	47	27.7%	-	-	benign(0.309)	tolerated(0.4)	neutral(0.113)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SYT3	84258	genome.wustl.edu	37	19	51128447	51128447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032298.2	-1	validated	p.P560L	1.000	28	0%	18	55.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_C2,superfamily_C2_CaLB
LILRB5	10990	genome.wustl.edu	37	19	54761024	54761024	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081442.1	-1	reviewed	p.L11	0.203	72	0%	39	79.5%	-	-	-	-	-	NULL
SH3KBP1	30011	genome.wustl.edu	37	X	19626155	19626155	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031892.2	-1	reviewed	p.I302	0.945	45	0%	66	30.3%	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
FAM47A	158724	genome.wustl.edu	37	X	34149264	34149264	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.E378*	0.505	31	0%	40	27.5%	-	-	-	-	-	NULL
WAS	7454	genome.wustl.edu	37	X	48542706	48542706	+	Missense_Mutation	SNP	C	C	T	rs132630269		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000377.2	+1	reviewed	p.A56V	0.998	55	0%	52	44.2%	-	-	possibly_damaging(0.601)	deleterious(0.01)	deleterious(0.614)	HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729
IL13RA1	3597	genome.wustl.edu	37	X	117925740	117925740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001560.2	+1	reviewed	p.D403Y	1.000	94	0%	101	36.6%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
GPR112	139378	genome.wustl.edu	37	X	135445745	135445745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A1CP-01A-11D-A135-09	TCGA-AX-A1CP-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.I2463V	0.882	58	0%	75	29.3%	-	-	benign(0.209)	tolerated(0.13)	neutral(0.273)	NULL
