Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
DAP3	7818	genome.wustl.edu	37	1	155697427	155697427	+	Silent	SNP	T	T	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004632.2	+1	reviewed	p.D167	0.683	53	0%	79	20.3%	-	-	-	-	-	HMMPfam_DAP3
HADHA	3030	genome.wustl.edu	37	2	26462001	26462001	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000182.4	-1	reviewed	p.C26W	0.034	54	0%	55	50.9%	-	-	benign(0.412)	deleterious(0.03)	deleterious(0.497)	NULL
HADHA	3030	genome.wustl.edu	37	2	26462002	26462002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000182.4	-1	reviewed	p.C26F	0.035	54	0%	55	50.9%	-	-	benign(0.027)	tolerated(0.11)	neutral(0.273)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73827880	73827880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.S3914I	0.679	44	0%	59	39%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
PECR	55825	genome.wustl.edu	37	2	216916187	216916187	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018441.5	-1	validated	p.I196M	1.000	43	0%	33	24.2%	-	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	superfamily_NAD(P)-binding Rossmann-fold domains
GIGYF2	26058	genome.wustl.edu	37	2	233651941	233651941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.R227H	1.000	60	0%	66	53%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHL1	10752	genome.wustl.edu	37	3	386358	386358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006614.2	+1	reviewed	p.E272K	0.986	71	0%	80	20%	-	-	benign(0.02)	tolerated(0.54)	neutral(0.009)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CRBN	51185	genome.wustl.edu	37	3	3197908	3197908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016302.3	-1	reviewed	p.D249N	1.000	35	0%	62	17.7%	-	-	possibly_damaging(0.696)	tolerated(0.21)	neutral(0.293)	HMMPfam_LON,HMMSmart_SM00464
HRH1	3269	genome.wustl.edu	37	3	11300904	11300909	+	In_Frame_Del	DEL	GTGGGG	GTGGGG	-	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	GTGGGG	GTGGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000861.3	+1	reviewed	p.VG61in_frame_del	1.000:1.000:1.000:1.000:1.000:0.955	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CAND2	23066	genome.wustl.edu	37	3	12858717	12858717	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012298.2	+1	validated	p.Q669H	1.000	20	0%	23	65.2%	-	-	possibly_damaging(0.886)	tolerated(0.11)	deleterious(0.618)	superfamily_ARM-type_fold
LRRC3B	116135	genome.wustl.edu	37	3	26751941	26751941	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052953.2	+1	provisional	p.*260Q	1.000	28	0%	39	25.6%	-	-	-	-	-	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47043999	47043999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	p.R1764W	0.008	13	0.000	8	0.875	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
RBM5	10181	genome.wustl.edu	37	3	50155888	50155889	+	Frame_Shift_Del	DEL	GA	GA	-	rs144835103	byCluster;by1000genomes	TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005778.1	+1	provisional	p.*816fs	1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
DVL3	1857	genome.wustl.edu	37	3	183882935	183882935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004423.3	+1	reviewed	p.R212C	1.000	46	0%	63	22.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Dishevelled
MUC4	4585	genome.wustl.edu	37	3	195512871	195512871	+	Silent	SNP	G	G	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.T1860	0.064	176	0%	278	39.9%	-	-	-	-	-	NULL
WHSC2	7469	genome.wustl.edu	37	4	1985204	1985204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005663.3	-1	reviewed	p.V488M	1.000	28	0%	16	37.5%	-	-	benign(0.02)	deleterious(0.01)	neutral(0.407)	NULL
POLR2B	5431	genome.wustl.edu	37	4	57891127	57891127	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000938.1	+1	reviewed	p.L1014V	1.000	78	0%	60	33.3%	-	-	benign(0.003)	tolerated(0.29)	neutral(0.029)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
MANBA	4126	genome.wustl.edu	37	4	103553416	103553416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005908.3	-1	reviewed	p.D813G	0.012	29	0%	30	23.3%	-	-	benign(0.07)	tolerated(0.35)	neutral(0.026)	NULL
ST8SIA4	7903	genome.wustl.edu	37	5	100231463	100231463	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005668.4	-1	reviewed	p.S47*	1.000	71	0%	76	19.7%	-	-	-	-	-	NULL
CDO1	1036	genome.wustl.edu	37	5	115152004	115152004	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001801.2	-1	validated	p.E31Q	1.000	21	0%	27	40.7%	-	-	possibly_damaging(0.924)	tolerated(0.12)	deleterious(0.633)	HMMPfam_CDO_I
PCDHA3	56145	genome.wustl.edu	37	5	140181279	140181279	+	Missense_Mutation	SNP	C	C	T	rs35124371		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018906.2	+1	reviewed	p.S166L	0.984	42	0%	73	47.9%	-	-	possibly_damaging(0.585)	deleterious(0)	deleterious(0.646)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA1	56114	genome.wustl.edu	37	5	140711775	140711775	+	Silent	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018912.2	+1	reviewed	p.N508	0.001	27	0%	65	24.6%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ICA1	3382	genome.wustl.edu	37	7	8167637	8167637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004968.2	-1	reviewed	p.G399A	1.000	44	0%	62	17.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ICA69
FLNC	2318	genome.wustl.edu	37	7	128481296	128481296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.R629Q	1.000	34	0%	22	68.2%	-	-	possibly_damaging(0.861)	deleterious(0.03)	deleterious(0.698)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
ADCY8	114	genome.wustl.edu	37	8	131896964	131896964	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115.2	-1	reviewed	p.N652fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1053
ZNF623	9831	genome.wustl.edu	37	8	144733545	144733545	+	Silent	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014789.3	+1	validated	p.N501	0.637	32	0%	24	37.5%	-	-	possibly_damaging(0.482)	deleterious(0.02)	deleterious(0.543)	superfamily_C2H2 and C2HC zinc fingers
TMEM215	401498	genome.wustl.edu	37	9	32784472	32784472	+	Silent	SNP	C	C	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212558.2	+1	validated	p.T97	1.000	24	0%	16	31.2%	-	-	-	-	-	NULL
UBAP2	55833	genome.wustl.edu	37	9	33923014	33923014	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018449.2	-1	reviewed	p.S1008fs	1.000	-	-	-	-	-	-	-	-	-	NULL
LOC730110	730110	genome.wustl.edu	37	9	35148110	35148110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342891.1	-1	model	p.R333H	0.962	34	0%	48	25%	-	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRKACG	5568	genome.wustl.edu	37	9	71628198	71628198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002732.3	-1	reviewed	p.R271W	0.996	31	0%	19	94.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ORM1	5004	genome.wustl.edu	37	9	117087347	117087347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000607.2	+1	reviewed	p.T152N	0.081	82	0%	49	42.9%	-	-	possibly_damaging(0.579)	deleterious(0.02)	deleterious(0.582)	HMMPfam_Lipocalin,superfamily_Calycin
DDX31	64794	genome.wustl.edu	37	9	135507448	135507448	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022779.7	-1	reviewed	p.Q596E	1.000	44	0%	52	73.1%	-	-	benign(0.123)	tolerated(0.81)	neutral(0.011)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYBPC3	4607	genome.wustl.edu	37	11	47369209	47369209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000256.3	-1	reviewed	p.R282W	0.322	12	0%	15	33.3%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
CELF1	10658	genome.wustl.edu	37	11	47508734	47508734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025596.2	-1	reviewed	p.H80N	1.000	31	0%	52	44.2%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
OR5R1	219479	genome.wustl.edu	37	11	56184981	56184981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004744.1	-1	provisional	p.S243F	0.546	73	0%	61	27.9%	-	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
OR5R1	219479	genome.wustl.edu	37	11	56184982	56184982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004744.1	-1	provisional	p.S243P	0.228	73	0%	62	25.8%	-	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
HNRNPA1	3178	genome.wustl.edu	37	12	54675624	54675624	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031157.2	+1	reviewed	p.V60L	1.000	35	0%	35	37.1%	-	-	benign(0.082)	tolerated(0.05)	neutral(0.351)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
UTP20	27340	genome.wustl.edu	37	12	101685757	101685757	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.Q350*	0.243	63	0%	59	52.5%	-	-	-	-	-	superfamily_ARM repeat
DNAH10	196385	genome.wustl.edu	37	12	124293490	124293490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.E927A	1.000	38	0%	52	30.8%	-	-	benign(0.085)	tolerated(0.23)	neutral(0.048)	NULL
SMAD3	4088	genome.wustl.edu	37	15	67482870	67482870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005902.3	+1	reviewed	p.S425Y	1.000	25	0%	21	61.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLFN14	342618	genome.wustl.edu	37	17	33880384	33880384	+	Silent	SNP	T	T	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129820.1	-1	provisional	p.L423	0.998	26	0%	35	14.3%	-	-	-	-	-	NULL
SYNRG	11276	genome.wustl.edu	37	17	35930738	35930738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007247.4	-1	reviewed	p.Q449E	1.000	32	0%	24	16.7%	-	-	possibly_damaging(0.823)	tolerated(0.06)	deleterious(0.634)	NULL
CDK12	51755	genome.wustl.edu	37	17	37627730	37627738	+	In_Frame_Del	DEL	CCCCCTTTG	CCCCCTTTG	-	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	CCCCCTTTG	CCCCCTTTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016507.2	+1	validated	p.PPL552in_frame_del	0.999:1.000:0.993:1.000:1.000:0.851:0.934:0.992:0.995	-	-	-	-	-	-	-	-	-	NULL
KRT38	8687	genome.wustl.edu	37	17	39596847	39596847	+	Silent	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006771.3	-1	reviewed	p.Q109	1.000	55	0%	72	20.8%	-	-	-	-	-	HMMPfam_Filament
MYOM1	8736	genome.wustl.edu	37	18	3126748	3126748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.G981V	1.000	80	0%	68	20.6%	-	-	benign(0.005)	tolerated(0.05)	neutral(0.345)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ATG4D	84971	genome.wustl.edu	37	19	10659704	10659704	+	Silent	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032885.4	+1	reviewed	p.C320	0.678	39	0%	244	10.7%	-	-	-	-	-	HMMPfam_Peptidase_C54
PRR12	57479	genome.wustl.edu	37	19	50099689	50099689	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020719.1	+1	validated	p.H699Q	1.000	6	0.000	7	0.571	-	-	unknown(0)	-	-	NULL
TAF4	6874	genome.wustl.edu	37	20	60584215	60584215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003185.3	-1	reviewed	p.V593L	1.000	37	0%	58	46.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TAFH,HMMSmart_TAFH
KCNQ2	3785	genome.wustl.edu	37	20	62055538	62055538	+	Silent	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172107.2	-1	reviewed	p.P413	0.104	10	0%	21	42.9%	-	-	-	-	-	NULL
LSS	4047	genome.wustl.edu	37	21	47639403	47639403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001438.2	-1	reviewed	p.F212L	0.993	53	0%	53	28.3%	-	-	benign(0)	tolerated(0.17)	neutral(0.059)	superfamily_Terp_cyc_toroid
ENSG00000211459	0	genome.wustl.edu	37	MT	1545	1545	+	RNA	SNP	T	T	C	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389680	+1	known	NULL	NULL	108	0%	119	15.1%	-	-	-	-	-	-
REPS2	9185	genome.wustl.edu	37	X	17040263	17040263	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004726.2	+1	reviewed	p.F139fs	0.997	-	-	-	-	-	-	-	-	-	NULL
DDX53	168400	genome.wustl.edu	37	X	23018928	23018928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182699.2	+1	validated	p.A252T	1.000	34	0%	17	41.2%	-	-	possibly_damaging(0.777)	deleterious(0.01)	deleterious(0.696)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
COX7B	1349	genome.wustl.edu	37	X	77158218	77158218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A1MY-01A-11D-A142-09	TCGA-B5-A1MY-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001866.2	+1	reviewed	p.A40V	0.396	89	0%	75	34.7%	-	-	benign(0.002)	tolerated(0.38)	neutral(0.018)	HMMPfam_COX7B,superfamily_Mitochondrial cytochrome c oxidase subunit VIIb
