Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
SAMD11	148398	genome.wustl.edu	37	1	874497	874497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152486.2	+1	validated	p.E170K	0.991	82	0%	41	36.6%	-	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
ATAD3B	83858	genome.wustl.edu	37	1	1413926	1413926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401951	+1	known	p.R16Q	0.000	62	0%	44	40.9%	-	-	-	-	-	NULL
ATAD3A	55210	genome.wustl.edu	37	1	1454313	1454313	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018188.3	+1	validated	p.E201*	1.000	561	0%	379	12.7%	-	-	-	-	-	NULL
SSU72	29101	genome.wustl.edu	37	1	1477515	1477515	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014188.2	-1	validated	p.I172	0.009	97	1%	79	36.7%	-	-	-	-	-	HMMPfam_Ssu72
MIB2	142678	genome.wustl.edu	37	1	1563491	1563491	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514234	+1	known	p.R465*	0.977	61	0%	54	29.6%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CDK11A	728642	genome.wustl.edu	37	1	1654209	1654209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024011.2	-1	reviewed	p.L17I	1.000	584	0%	349	21.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NADK	65220	genome.wustl.edu	37	1	1685498	1685498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023018.3	-1	validated	p.E365K	1.000	53	0%	25	40%	-	-	probably_damaging(0.998)	tolerated(0.43)	deleterious(0.488)	HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)
NADK	65220	genome.wustl.edu	37	1	1688616	1688616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344463	-1	known	p.R237C	0.007	27	0%	13	61.5%	-	-	benign(0.104)	deleterious(0)	neutral(0.453)	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1888205	1888205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080484.1	-1	predicted	p.L624F	1.000	132	0%	84	36.9%	-	-	possibly_damaging(0.456)	tolerated(0.8)	neutral(0.150)	NULL
C1orf222	339457	genome.wustl.edu	37	1	1890560	1890560	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000493316	-1	known	p.R78*	0.007	153	0%	122	41%	-	-	benign(0.158)	tolerated(0.26)	neutral(0.048)	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1897900	1897900	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080484.1	-1	predicted	p.I437	0.034	56	0%	46	43.5%	-	-	-	-	-	NULL
GABRD	2563	genome.wustl.edu	37	1	1961159	1961159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000815.4	+1	reviewed	p.K339N	1.000	120	0%	75	32%	-	-	benign(0.055)	tolerated(0.29)	neutral(0.033)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
MMEL1	79258	genome.wustl.edu	37	1	2529726	2529726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033467.3	-1	reviewed	p.Y389D	1.000	222	0%	160	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
PRDM16	63976	genome.wustl.edu	37	1	3350324	3350324	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022114.3	+1	reviewed	p.V1259	0.987	146	0%	110	37.3%	-	-	-	-	-	NULL
ARHGEF16	27237	genome.wustl.edu	37	1	3379972	3379972	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014448.3	+1	reviewed	p.F108	0.152	21	0%	17	52.9%	-	-	-	-	-	NULL
ARHGEF16	27237	genome.wustl.edu	37	1	3389648	3389648	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014448.3	+1	reviewed	p.F343	0.881	111	0%	72	18.1%	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TPRG1L	127262	genome.wustl.edu	37	1	3544084	3544084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182752.3	+1	validated	p.R164Q	1.000	162	0%	83	15.7%	-	-	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	NULL
WRAP73	49856	genome.wustl.edu	37	1	3563305	3563305	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017818.3	-1	reviewed	p.D88	1.000	123	0%	72	19.4%	-	-	-	-	-	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
CCDC27	148870	genome.wustl.edu	37	1	3683117	3683117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152492.2	+1	validated	p.D491Y	0.786	258	0%	88	44.3%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
CCDC27	148870	genome.wustl.edu	37	1	3683828	3683828	+	Missense_Mutation	SNP	A	A	C	rs142578610	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152492.2	+1	validated	p.K521T	0.001	93	0%	48	27.1%	-	-	benign(0.42)	tolerated(0.31)	neutral(0.163)	NULL
DFFB	1677	genome.wustl.edu	37	1	3800135	3800135	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004402.2	+1	reviewed	p.E283*	0.991	577	0.2%	303	33%	-	-	-	-	-	HMMPfam_DFF40,superfamily_His-Me finger endonucleases
AJAP1	55966	genome.wustl.edu	37	1	4772689	4772689	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042478.1	+1	validated	p.T253	0.749	66	0%	43	39.5%	-	-	-	-	-	NULL
AJAP1	55966	genome.wustl.edu	37	1	4832549	4832549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042478.1	+1	validated	p.T376M	0.876	74	0%	60	28.3%	-	-	unknown(0)	deleterious(0)	-	NULL
NPHP4	261734	genome.wustl.edu	37	1	5934951	5934951	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015102.2	-1	reviewed	p.I1009	0.697	86	0%	48	29.2%	-	-	-	-	-	NULL
NPHP4	261734	genome.wustl.edu	37	1	6012845	6012845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015102.2	-1	reviewed	p.D242G	0.966	61	0%	27	22.2%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
KCNAB2	8514	genome.wustl.edu	37	1	6142305	6142305	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003636.2	+1	reviewed	p.F84	0.987	137	0%	118	44.9%	-	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
ACOT7	11332	genome.wustl.edu	37	1	6399610	6399610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181864.2	-1	reviewed	p.D111N	1.000	27	0%	23	17.4%	-	-	benign(0.328)	tolerated(0.29)	neutral(0.132)	HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase
TAS1R1	80835	genome.wustl.edu	37	1	6638968	6638968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138697.3	+1	reviewed	p.G617D	0.704	178	0%	133	37.6%	-	-	benign(0.124)	tolerated(0.2)	neutral(0.059)	HMMPfam_7tm_3
PHF13	148479	genome.wustl.edu	37	1	6680182	6680182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153812.2	+1	validated	p.S154N	0.887	37	0%	27	40.7%	-	-	possibly_damaging(0.797)	tolerated(0.47)	neutral(0.310)	NULL
THAP3	90326	genome.wustl.edu	37	1	6692491	6692491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138350.2	+1	provisional	p.R132I	0.020	64	0%	45	26.7%	-	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	NULL
DNAJC11	55735	genome.wustl.edu	37	1	6697286	6697286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018198.3	-1	validated	p.S499L	1.000	203	0%	185	39.5%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DNAJC11	55735	genome.wustl.edu	37	1	6704684	6704684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018198.3	-1	validated	p.S344F	1.000	184	0%	108	31.5%	-	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
PER3	8863	genome.wustl.edu	37	1	7845553	7845553	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016831.1	+1	reviewed	p.E61*	1.000	132	0%	73	31.5%	-	-	-	-	-	NULL
ERRFI1	54206	genome.wustl.edu	37	1	8073509	8073509	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018948.3	-1	validated	p.E384*	1.000	442	0%	230	36.1%	-	-	-	-	-	NULL
RERE	473	genome.wustl.edu	37	1	8418430	8418430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.E1389K	1.000	136	0%	99	44.4%	-	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_Atrophin-1
RERE	473	genome.wustl.edu	37	1	8421496	8421496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.R691C	1.000	300	0%	221	32.6%	-	-	unknown(0)	deleterious(0.02)	-	HMMPfam_Atrophin-1
RERE	473	genome.wustl.edu	37	1	8716126	8716126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.K77N	1.000	630	0%	344	14%	-	-	unknown(0)	deleterious(0.01)	-	NULL
SLC2A7	155184	genome.wustl.edu	37	1	9078345	9078345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207420.2	-1	provisional	p.V176I	0.932	166	0%	89	36%	-	-	benign(0.004)	tolerated(1)	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
CLSTN1	22883	genome.wustl.edu	37	1	9790694	9790694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009566.1	-1	validated	p.E940K	1.000	125	0%	92	19.6%	-	-	benign(0.058)	tolerated(0.08)	neutral(0.303)	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9791315	9791315	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009566.1	-1	validated	p.N899	0.799	100	0%	57	45.6%	-	-	-	-	-	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9809933	9809933	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009566.1	-1	validated	p.E230*	0.998	570	0%	312	33%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
UBE4B	10277	genome.wustl.edu	37	1	10209262	10209262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105562.1	+1	reviewed	p.S871*	1.000	409	0%	193	35.2%	-	-	-	-	-	HMMPfam_Ufd2P_core
KIF1B	23095	genome.wustl.edu	37	1	10397247	10397247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015074.3	+1	reviewed	p.R1036Q	0.998	355	0%	228	34.2%	-	-	possibly_damaging(0.596)	tolerated(0.7)	neutral(0.208)	NULL
KIF1B	23095	genome.wustl.edu	37	1	10425540	10425540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015074.3	+1	reviewed	p.S1483L	0.996	263	0%	191	33.5%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
PGD	5226	genome.wustl.edu	37	1	10478955	10478955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002631.2	+1	reviewed	p.F394L	1.000	312	0%	104	26.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_6PGD,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like
CASZ1	54897	genome.wustl.edu	37	1	10699607	10699607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.A1558T	1.000	34	0%	28	60.7%	-	-	possibly_damaging(0.577)	tolerated(0.48)	neutral(0.209)	NULL
CASZ1	54897	genome.wustl.edu	37	1	10699878	10699878	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.K1467	1.000	57	0%	52	15.4%	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CASZ1	54897	genome.wustl.edu	37	1	10708004	10708004	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.L1117	0.998	90	0%	59	40.7%	-	-	-	-	-	NULL
CASZ1	54897	genome.wustl.edu	37	1	10725344	10725344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.A101T	0.709	52	0%	52	38.5%	-	-	benign(0.01)	deleterious(0.04)	neutral(0.349)	NULL
C1orf127	148345	genome.wustl.edu	37	1	11015211	11015211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377008	-1	known	p.H104N	0.015	277	0%	165	32.7%	-	-	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	NULL
EXOSC10	5394	genome.wustl.edu	37	1	11128742	11128742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001998.1	-1	validated	p.S837Y	0.113	365	0%	223	37.7%	-	-	benign(0.265)	deleterious(0.02)	neutral(0.411)	NULL
MTOR	2475	genome.wustl.edu	37	1	11184573	11184573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.S2215Y	1.000	291	0%	180	25.6%	-	-	benign(0.125)	deleterious(0.01)	neutral(0.416)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like,superfamily_ARM-type_fold
MTOR	2475	genome.wustl.edu	37	1	11204802	11204802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.S1592Y	1.000	131	0%	80	46.3%	-	-	possibly_damaging(0.644)	tolerated(0.09)	deleterious(0.522)	HMMPfam_FAT,superfamily_ARM-type_fold,superfamily_SSF48452
MTOR	2475	genome.wustl.edu	37	1	11307755	11307755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.K384N	1.000	287	0%	151	31.1%	-	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	superfamily_ARM-type_fold
C1orf187	374946	genome.wustl.edu	37	1	11771927	11771927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198545.3	+1	validated	p.D221G	0.934	145	0%	75	41.3%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
C1orf187	374946	genome.wustl.edu	37	1	11779689	11779689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198545.3	+1	validated	p.R329M	1.000	76	0%	44	38.6%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CLCN6	1185	genome.wustl.edu	37	1	11897555	11897555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001286.2	+1	reviewed	p.S765L	1.000	89	1.1%	64	29.7%	-	-	possibly_damaging(0.452)	tolerated(0.66)	neutral(0.150)	HMMPfam_CBS
MIIP	60672	genome.wustl.edu	37	1	12091394	12091394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436478	+1	known	p.S306F	1.000	58	0%	42	35.7%	-	-	unknown(0)	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12337028	12337028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015378.2	+1	reviewed	p.K1128T	1.000	122	0%	75	12%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
AADACL4	343066	genome.wustl.edu	37	1	12726669	12726669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013630.1	+1	provisional	p.F383V	0.054	70	0%	36	16.7%	-	-	benign(0.108)	deleterious(0.02)	neutral(0.392)	superfamily_SSF53474
AADACL3	126767	genome.wustl.edu	37	1	12779491	12779491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103170.1	+1	validated	p.E4D	0.957	284	0%	143	40.6%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
PRAMEF1	65121	genome.wustl.edu	37	1	12854401	12854401	+	Missense_Mutation	SNP	G	G	A	rs78584260		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023013.1	+1	provisional	p.E209K	0.001	1092	0%	532	23.1%	-	-	benign(0.309)	deleterious(0.01)	deleterious(0.502)	superfamily_SSF52047
PRAMEF4	400735	genome.wustl.edu	37	1	12941936	12941936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009611.2	-1	validated	p.N205S	0.001	120	0.8%	58	31%	-	-	possibly_damaging(0.903)	tolerated(0.34)	neutral(0.381)	superfamily_SSF52047
PRAMEF4	400735	genome.wustl.edu	37	1	12942094	12942094	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009611.2	-1	validated	p.F152	0.000	209	1.4%	114	33.3%	-	-	-	-	-	superfamily_SSF52047
PRAMEF10	343071	genome.wustl.edu	37	1	12954829	12954829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039361.3	-1	validated	p.D152Y	0.029	604	0%	266	16.5%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF52047
PRAMEF7	441871	genome.wustl.edu	37	1	12979887	12979887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012277.1	+1	provisional	p.I360T	0.007	194	0.5%	175	25.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNI-like
ENSG00000229571	0	genome.wustl.edu	37	1	13219401	13219401	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423177	-1	known	p.E61*	0.001	308	0%	136	19.9%	-	-	possibly_damaging(0.779)	deleterious(0.01)	deleterious(0.697)	superfamily_RNI-like
PDPN	10630	genome.wustl.edu	37	1	13933681	13933681	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006474.4	+1	reviewed	p.Q103	0.010	155	0%	105	40%	-	-	-	-	-	HMMPfam_Podoplanin
PRDM2	7799	genome.wustl.edu	37	1	14108531	14108531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012231.4	+1	reviewed	p.S1414L	0.251	113	0%	63	20.6%	-	-	probably_damaging(0.962)	tolerated(0.1)	deleterious(0.692)	NULL
CELA2B	51032	genome.wustl.edu	37	1	15813918	15813918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015849.2	+1	reviewed	p.D260Y	0.001	146	0%	124	32.3%	-	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
DNAJC16	23341	genome.wustl.edu	37	1	15894641	15894641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015291.2	+1	provisional	p.F773C	1.000	49	0%	35	48.6%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
RSC1A1	6248	genome.wustl.edu	37	1	15988150	15988150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006511.1	+1	provisional	p.R596Q	1.000	566	0%	341	17.9%	-	-	possibly_damaging(0.833)	deleterious(0)	deleterious(0.762)	HMMSmart_UBA
PLEKHM2	23207	genome.wustl.edu	37	1	16060342	16060342	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015164.2	+1	validated	p.F991	0.997	79	0%	47	29.8%	-	-	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16242692	16242692	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442985	+1	known	p.E178*	1.000	323	0.3%	164	30.5%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_RNA-binding domain RBD
SPEN	23013	genome.wustl.edu	37	1	16245426	16245426	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442985	+1	known	p.L207S	0.995	333	0%	205	32.2%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SPEN	23013	genome.wustl.edu	37	1	16254701	16254701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.E656*	1.000	175	0%	91	33%	-	-	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16256144	16256144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.R1137C	1.000	88	0%	45	42.2%	-	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
SPEN	23013	genome.wustl.edu	37	1	16256435	16256435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.D1234N	0.998	124	0%	85	29.4%	-	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	NULL
CLCNKB	1188	genome.wustl.edu	37	1	16375652	16375652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000085.3	+1	reviewed	p.F231L	1.000	209	0%	121	25.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
CLCNKB	1188	genome.wustl.edu	37	1	16378032	16378032	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000085.3	+1	reviewed	p.I429	0.573	813	0%	477	39.6%	-	-	-	-	-	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
NBPF1	55672	genome.wustl.edu	37	1	16890675	16890675	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017940.3	-1	predicted	p.S1045	0.000	1046	0.2%	747	10.3%	-	-	-	-	-	HMMPfam_DUF1220
NBPF1	55672	genome.wustl.edu	37	1	16901178	16901178	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017940.3	-1	predicted	p.P734	0.003	817	0%	435	9.2%	-	-	-	-	-	HMMPfam_DUF1220
CROCC	9696	genome.wustl.edu	37	1	17248549	17248549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014675.3	+1	validated	p.E12D	0.328	55	0%	31	16.1%	-	-	unknown(0)	tolerated(0.23)	-	NULL
PADI2	11240	genome.wustl.edu	37	1	17410232	17410232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007365.2	-1	reviewed	p.R347C	1.000	170	0%	132	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAD,superfamily_SSF55909
PADI1	29943	genome.wustl.edu	37	1	17548859	17548859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013358.2	+1	reviewed	p.R56H	0.007	103	0%	76	35.5%	-	-	possibly_damaging(0.906)	tolerated(0.37)	neutral(0.379)	superfamily_Cupredoxins,HMMPfam_PAD_N
PADI4	23569	genome.wustl.edu	37	1	17668844	17668844	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012387.2	+1	reviewed	p.A294	0.132	94	0%	60	13.3%	-	-	-	-	-	HMMPfam_PAD,superfamily_Pentein
RCC2	55920	genome.wustl.edu	37	1	17735630	17735630	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136204.1	-1	validated	p.E509*	1.000	726	0%	354	33.9%	-	-	-	-	-	NULL
RCC2	55920	genome.wustl.edu	37	1	17752171	17752171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136204.1	-1	validated	p.R130H	1.000	24	0%	26	34.6%	-	-	probably_damaging(0.989)	tolerated(0.13)	deleterious(0.692)	superfamily_RCC1/BLIP-II
ACTL8	81569	genome.wustl.edu	37	1	18152999	18152999	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030812.2	+1	validated	p.E362	0.554	137	0%	93	45.2%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
IFFO2	126917	genome.wustl.edu	37	1	19244929	19244929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136265.1	-1	validated	p.R297Q	1.000	276	0%	170	41.2%	-	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_Filament
UBR4	23352	genome.wustl.edu	37	1	19408037	19408037	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.N5013	1.000	217	0%	137	30.7%	-	-	-	-	-	NULL
UBR4	23352	genome.wustl.edu	37	1	19415446	19415446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.P4746L	1.000	50	0%	58	37.9%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19442122	19442122	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.R3611	0.889	45	0%	42	35.7%	-	-	-	-	-	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19470546	19470546	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.R2703*	1.000	541	0%	265	35.5%	-	-	-	-	-	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19488354	19488354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.T1665M	1.000	301	0%	183	35.5%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat
MRTO4	51154	genome.wustl.edu	37	1	19581309	19581309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016183.3	+1	reviewed	p.E21G	1.000	498	0%	276	15.2%	-	-	possibly_damaging(0.521)	tolerated(0.12)	neutral(0.436)	HMMPfam_Ribosomal_L10
RNF186	54546	genome.wustl.edu	37	1	20141521	20141521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019062.1	-1	provisional	p.A25V	0.000	28	0%	15	26.7%	-	-	benign(0.201)	deleterious(0.02)	neutral(0.402)	NULL
OTUD3	23252	genome.wustl.edu	37	1	20234191	20234191	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015207.1	+1	validated	p.A383	0.000	207	0%	102	30.4%	-	-	-	-	-	NULL
CDA	978	genome.wustl.edu	37	1	20931520	20931520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001785.2	+1	reviewed	p.I85T	1.000	263	0%	118	39.8%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_dCMP_cyt_deam_1,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine_deaminase-like
DDOST	1650	genome.wustl.edu	37	1	20982660	20982660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005216.4	-1	reviewed	p.V113M	0.995	76	0%	54	48.1%	-	-	benign(0.148)	deleterious(0.04)	neutral(0.362)	HMMPfam_DDOST_48kD
HP1BP3	50809	genome.wustl.edu	37	1	21074117	21074117	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016287.3	-1	validated	p.C391	0.226	204	0%	91	34.1%	-	-	-	-	-	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
EIF4G3	8672	genome.wustl.edu	37	1	21154187	21154187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.F1342L	1.000	190	0%	134	12.7%	-	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21188756	21188756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.R970W	1.000	351	0%	217	40.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
EIF4G3	8672	genome.wustl.edu	37	1	21226289	21226289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.R578C	0.989	576	0%	330	36.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ECE1	1889	genome.wustl.edu	37	1	21571534	21571534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001397.2	-1	reviewed	p.R409H	1.000	285	0%	174	35.1%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
RAP1GAP	5909	genome.wustl.edu	37	1	21934721	21934721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145658.1	-1	validated	p.F491L	1.000	103	0%	79	39.2%	-	-	benign(0.245)	tolerated(0.12)	neutral(0.286)	NULL
RAP1GAP	5909	genome.wustl.edu	37	1	21936767	21936767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145658.1	-1	validated	p.L346S	1.000	64	0%	30	30%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
RAP1GAP	5909	genome.wustl.edu	37	1	21940145	21940145	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145658.1	-1	validated	p.F214	1.000	195	0%	107	36.4%	-	-	-	-	-	superfamily_Rap/Ran-GAP (Pfam 02145)
RAP1GAP	5909	genome.wustl.edu	37	1	21940547	21940547	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145658.1	-1	validated	p.L173	0.819	196	0%	117	29.9%	-	-	-	-	-	superfamily_Rap/Ran-GAP (Pfam 02145)
ZBTB40	9923	genome.wustl.edu	37	1	22817918	22817918	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083621.1	+1	validated	p.L241	1.000	145	0%	63	39.7%	-	-	-	-	-	NULL
ZBTB40	9923	genome.wustl.edu	37	1	22817991	22817991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083621.1	+1	validated	p.E266K	1.000	137	0%	54	33.3%	-	-	benign(0.273)	deleterious(0.01)	neutral(0.435)	NULL
EPHA8	2046	genome.wustl.edu	37	1	22903214	22903214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020526.3	+1	reviewed	p.D222N	1.000	44	0%	49	42.9%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
EPHA8	2046	genome.wustl.edu	37	1	22920023	22920023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020526.3	+1	reviewed	p.E483*	1.000	30	0%	31	32.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
C1QA	712	genome.wustl.edu	37	1	22965820	22965820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015991.2	+1	reviewed	p.D220Y	0.003	84	0%	45	37.8%	-	-	possibly_damaging(0.645)	deleterious(0.02)	deleterious(0.609)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
C1QA	712	genome.wustl.edu	37	1	22965932	22965932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339353	+1	known	p.L252I	0.118	14	0%	15	53.3%	-	-	unknown(0)	deleterious(0)	-	NULL
C1QC	714	genome.wustl.edu	37	1	22973958	22973958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114101.1	+1	reviewed	p.F140L	1.000	198	0%	110	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
C1QB	713	genome.wustl.edu	37	1	22986021	22986021	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000491.3	+1	reviewed	p.I24	0.008	80	1.3%	48	12.5%	-	-	-	-	-	NULL
EPHB2	2048	genome.wustl.edu	37	1	23110922	23110922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004442.6	+1	reviewed	p.T55M	1.000	126	0%	82	29.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
LUZP1	7798	genome.wustl.edu	37	1	23415419	23415419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142546.1	-1	reviewed	p.R1067Q	0.047	100	0%	79	34.2%	-	-	benign(0.09)	tolerated(0.05)	neutral(0.352)	NULL
LUZP1	7798	genome.wustl.edu	37	1	23417939	23417939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142546.1	-1	reviewed	p.R939Q	0.047	226	0%	154	41.6%	-	-	benign(0.027)	tolerated(0.08)	neutral(0.301)	NULL
HNRNPR	10236	genome.wustl.edu	37	1	23637504	23637504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102398.1	-1	reviewed	p.R452W	1.000	449	0%	198	14.6%	-	-	unknown(0)	tolerated(0.11)	-	superfamily_SSF54928
ZNF436	80818	genome.wustl.edu	37	1	23689031	23689031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077195.1	-1	validated	p.E282K	0.719	220	0%	144	33.3%	-	-	probably_damaging(0.977)	tolerated(0.15)	deleterious(0.660)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TCEA3	6920	genome.wustl.edu	37	1	23743831	23743831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003196.1	-1	validated	p.K97N	1.000	817	0%	445	26.7%	-	-	possibly_damaging(0.819)	tolerated(0.45)	neutral(0.322)	NULL
ASAP3	55616	genome.wustl.edu	37	1	23756371	23756371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017707.3	-1	reviewed	p.S897F	0.996	109	0%	71	23.9%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
MYOM3	127294	genome.wustl.edu	37	1	24388600	24388600	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152372.3	-1	validated	e32-1	1.000	167	0%	133	31.6%	-	-	-	-	-	-
MYOM3	127294	genome.wustl.edu	37	1	24417405	24417405	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152372.3	-1	validated	p.V438	0.000	163	0%	113	46%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
C1orf201	90529	genome.wustl.edu	37	1	24700275	24700275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178122.3	-1	predicted	p.R116I	0.008	150	0%	85	29.4%	-	-	possibly_damaging(0.662)	tolerated(0.14)	deleterious(0.484)	NULL
SRRM1	10250	genome.wustl.edu	37	1	24995771	24995771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005839.3	+1	validated	p.R633W	1.000	475	0%	204	33.8%	-	-	unknown(0)	deleterious(0)	-	NULL
RUNX3	864	genome.wustl.edu	37	1	25233903	25233903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031680.2	-1	reviewed	p.R198W	1.000	48	0%	46	32.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Runt
TMEM50A	23585	genome.wustl.edu	37	1	25679441	25679441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014313.2	+1	reviewed	p.L115I	1.000	688	0%	319	40.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_UPF0220
TMEM57	55219	genome.wustl.edu	37	1	25810697	25810697	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018202.4	+1	validated	p.S415	0.018	57	0%	30	40%	-	-	-	-	-	HMMPfam_Macoilin
TMEM57	55219	genome.wustl.edu	37	1	25817913	25817913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018202.4	+1	validated	p.Y544D	1.000	151	0%	70	38.6%	-	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	superfamily_Prefoldin,HMMPfam_Macoilin
MAN1C1	57134	genome.wustl.edu	37	1	26109183	26109183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020379.2	+1	validated	p.E586D	1.000	329	0%	190	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
SEPN1	57190	genome.wustl.edu	37	1	26136285	26136285	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354177	+1	known	p.D294	0.978	264	0%	134	34.3%	-	-	-	-	-	NULL
LOC100289250	100289250	genome.wustl.edu	37	1	26189689	26189689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342048.1	+1	model	p.V56I	0.082	71	0%	47	31.9%	-	-	-	-	-	NULL
STMN1	3925	genome.wustl.edu	37	1	26228112	26228112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145454.1	-1	reviewed	p.L83P	0.997	924	0%	531	37.1%	-	-	possibly_damaging(0.785)	deleterious(0)	deleterious(0.738)	HMMPfam_Stathmin,superfamily_Stathmin
EXTL1	2134	genome.wustl.edu	37	1	26349181	26349181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004455.2	+1	reviewed	p.S15L	0.990	85	0%	73	39.7%	-	-	unknown(0)	deleterious(0.05)	-	NULL
EXTL1	2134	genome.wustl.edu	37	1	26349434	26349434	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004455.2	+1	reviewed	p.F99	0.177	194	0%	94	36.2%	-	-	-	-	-	HMMPfam_Exostosin
CEP85	64793	genome.wustl.edu	37	1	26582329	26582329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022778.2	+1	provisional	p.L292F	0.999	143	0%	117	23.9%	-	-	possibly_damaging(0.454)	deleterious(0.04)	deleterious(0.497)	NULL
ZNF683	257101	genome.wustl.edu	37	1	26688336	26688336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114759.1	-1	validated	p.P441S	0.774	102	0%	106	29.2%	-	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	NULL
ZNF683	257101	genome.wustl.edu	37	1	26691051	26691051	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114759.1	-1	validated	p.K329T	1.000	207	0%	121	38.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF683	257101	genome.wustl.edu	37	1	26691650	26691650	+	Missense_Mutation	SNP	C	C	A	rs187778427	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114759.1	-1	validated	p.Q129H	0.000	169	0%	115	36.5%	-	-	benign(0.253)	tolerated(0.18)	neutral(0.082)	NULL
ZNF683	257101	genome.wustl.edu	37	1	26694120	26694120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114759.1	-1	validated	p.D95N	0.002	48	0%	23	30.4%	-	-	possibly_damaging(0.602)	tolerated(0.46)	neutral(0.221)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27093043	27093043	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.E992*	1.000	164	0.6%	64	32.8%	-	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27101574	27101574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.P1619L	1.000	141	0%	62	40.3%	-	-	possibly_damaging(0.947)	deleterious(0.04)	deleterious(0.740)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.R1989*	1.000	230	0%	144	36.8%	-	-	-	-	-	NULL
PIGV	55650	genome.wustl.edu	37	1	27124067	27124067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017837.2	+1	validated	p.F405C	1.000	388	0.3%	207	30.4%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Mannosyl_trans2
PIGV	55650	genome.wustl.edu	37	1	27124247	27124247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017837.2	+1	validated	p.S465Y	0.999	377	0%	198	18.7%	-	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_Mannosyl_trans2
GPATCH3	63906	genome.wustl.edu	37	1	27226777	27226777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022078.2	-1	validated	p.P53S	1.000	41	0%	41	19.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC646567	646567	genome.wustl.edu	37	1	27312483	27312483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929503.3	-1	model	p.L117I	1.000	276	0%	142	18.3%	-	-	-	-	-	HMMPfam_DUF2055
FAM46B	115572	genome.wustl.edu	37	1	27333242	27333242	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052943.3	-1	validated	p.A157	0.004	61	0%	61	39.3%	-	-	-	-	-	HMMPfam_DUF1693
SLC9A1	6548	genome.wustl.edu	37	1	27440440	27440440	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003047.3	-1	validated	p.F230	0.993	131	0%	102	26.5%	-	-	-	-	-	HMMPfam_Na_H_Exchanger
SYTL1	84958	genome.wustl.edu	37	1	27679962	27679962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032872.1	+1	provisional	p.R499H	1.000	35	0%	22	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
EYA3	2140	genome.wustl.edu	37	1	28315088	28315088	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001990.2	-1	reviewed	p.E500*	1.000	226	0%	126	38.1%	-	-	-	-	-	HMMPfam_Hydrolase
EYA3	2140	genome.wustl.edu	37	1	28326510	28326510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001990.2	-1	reviewed	p.F348L	1.000	245	0%	117	34.2%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Hydrolase
SESN2	83667	genome.wustl.edu	37	1	28599955	28599955	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031459.3	+1	reviewed	p.S279	1.000	59	0%	66	34.8%	-	-	-	-	-	HMMPfam_PA26
PHACTR4	65979	genome.wustl.edu	37	1	28792355	28792355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023923.3	+1	reviewed	p.R154Q	0.000	234	0%	127	33.9%	-	-	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	NULL
PHACTR4	65979	genome.wustl.edu	37	1	28793190	28793190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023923.3	+1	reviewed	p.A255V	1.000	169	0%	93	37.6%	-	-	benign(0.058)	tolerated(0.34)	neutral(0.026)	NULL
GMEB1	10691	genome.wustl.edu	37	1	29041213	29041213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006582.2	+1	reviewed	p.E550D	1.000	107	0%	46	15.2%	-	-	benign(0.404)	tolerated(0.38)	neutral(0.148)	NULL
EPB41	2035	genome.wustl.edu	37	1	29314319	29314319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203343.2	+1	reviewed	p.E124*	1.000	175	0%	73	28.8%	-	-	-	-	-	NULL
SRSF4	6429	genome.wustl.edu	37	1	29475125	29475125	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005626.4	-1	reviewed	p.R428*	0.535	420	0%	309	32.7%	-	-	-	-	-	NULL
PTPRU	10076	genome.wustl.edu	37	1	29606138	29606138	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005704.3	+1	reviewed	p.A578	0.944	133	0.8%	97	44.3%	-	-	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
PTPRU	10076	genome.wustl.edu	37	1	29609321	29609321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005704.3	+1	reviewed	p.E668K	0.999	82	0%	59	49.2%	-	-	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	NULL
LAPTM5	7805	genome.wustl.edu	37	1	31230535	31230535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006762.2	-1	reviewed	p.A20T	0.978	101	0%	77	31.2%	-	-	probably_damaging(0.989)	tolerated(0.09)	deleterious(0.736)	NULL
PUM1	9698	genome.wustl.edu	37	1	31465300	31465300	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020658.1	-1	reviewed	p.T365	1.000	129	0%	87	40.2%	-	-	-	-	-	NULL
PUM1	9698	genome.wustl.edu	37	1	31465335	31465335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020658.1	-1	reviewed	p.G354S	1.000	130	0%	94	39.4%	-	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
PUM1	9698	genome.wustl.edu	37	1	31467908	31467908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020658.1	-1	reviewed	p.D294Y	1.000	643	0%	381	26.8%	-	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
ZCCHC17	51538	genome.wustl.edu	37	1	31810034	31810034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016505.2	+1	provisional	p.R46Q	1.000	516	0%	255	37.3%	-	-	benign(0.304)	tolerated(0.27)	neutral(0.128)	HMMPfam_S1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316
FABP3	2170	genome.wustl.edu	37	1	31845811	31845811	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004102.3	-1	reviewed	p.F17	1.000	95	0%	80	22.5%	-	-	-	-	-	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Lipocalins
KPNA6	23633	genome.wustl.edu	37	1	32636340	32636340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012316.4	+1	reviewed	p.E486K	1.000	170	0%	95	36.8%	-	-	benign(0.334)	tolerated(0.1)	neutral(0.391)	superfamily_ARM repeat
CCDC28B	79140	genome.wustl.edu	37	1	32669839	32669839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024296.3	+1	reviewed	p.K128N	1.000	266	0%	179	35.2%	-	-	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	NULL
ZBTB8A	653121	genome.wustl.edu	37	1	33060819	33060819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040441.1	+1	validated	p.R330*	1.000	285	0%	212	34.9%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SYNC	81493	genome.wustl.edu	37	1	33160799	33160799	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030786.2	-1	reviewed	p.E300	0.912	51	0%	46	47.8%	-	-	-	-	-	NULL
SYNC	81493	genome.wustl.edu	37	1	33161533	33161533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030786.2	-1	reviewed	p.E56K	1.000	263	0%	176	30.1%	-	-	possibly_damaging(0.798)	deleterious(0)	deleterious(0.745)	NULL
RNF19B	127544	genome.wustl.edu	37	1	33415182	33415182	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153341.2	-1	validated	p.E277*	1.000	202	0%	156	35.3%	-	-	-	-	-	HMMSmart_SM00647
AK2	204	genome.wustl.edu	37	1	33487293	33487293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001625.2	-1	reviewed	p.E77D	1.000	132	0%	57	49.1%	-	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZSCAN20	7579	genome.wustl.edu	37	1	33958976	33958976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145238.3	+1	validated	p.R545Q	1.000	105	0%	71	31%	-	-	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	HMMSmart_SM00717
CSMD2	114784	genome.wustl.edu	37	1	33990513	33990513	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.I3311	0.558	303	0%	175	32.6%	-	-	-	-	-	NULL
CSMD2	114784	genome.wustl.edu	37	1	34002635	34002635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.S3145Y	1.000	250	0%	110	35.5%	-	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZMYM1	79830	genome.wustl.edu	37	1	35578947	35578947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024772.3	+1	validated	p.T506A	1.000	55	0%	35	42.9%	-	-	benign(0.21)	tolerated(1)	neutral(0.021)	HMMSmart_ZnF_TTF
ZMYM4	9202	genome.wustl.edu	37	1	35851752	35851752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005095.2	+1	validated	p.R600C	1.000	336	0%	159	38.4%	-	-	possibly_damaging(0.612)	tolerated(0.16)	neutral(0.271)	HMMPfam_zf-FCS,HMMSmart_SM00746
ZMYM4	9202	genome.wustl.edu	37	1	35863016	35863016	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457946	+1	known	p.*682R	0.975	222	0%	146	33.6%	-	-	-	-	-	NULL
CLSPN	63967	genome.wustl.edu	37	1	36212389	36212389	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022111.2	-1	reviewed	p.C944	0.999	472	0%	280	11.4%	-	-	-	-	-	NULL
EIF2C3	192669	genome.wustl.edu	37	1	36439108	36439108	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024852.2	+1	reviewed	p.I218	0.999	298	0%	133	22.6%	-	-	-	-	-	HMMPfam_DUF1785
THRAP3	9967	genome.wustl.edu	37	1	36752491	36752491	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.S220	0.060	95	0%	35	25.7%	-	-	-	-	-	NULL
THRAP3	9967	genome.wustl.edu	37	1	36762369	36762369	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.Q767	1.000	304	0%	100	33%	-	-	-	-	-	NULL
STK40	83931	genome.wustl.edu	37	1	36808899	36808899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359297	-1	known	p.R385S	0.018	98	0%	54	35.2%	-	-	unknown(0)	tolerated(0.08)	-	NULL
GRIK3	2899	genome.wustl.edu	37	1	37282864	37282864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000831.3	-1	reviewed	p.P630S	1.000	258	0.4%	166	36.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
MTF1	4520	genome.wustl.edu	37	1	38304324	38304324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005955.2	-1	reviewed	p.R251Q	1.000	408	0%	240	33.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SF3A3	10946	genome.wustl.edu	37	1	38435065	38435065	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006802.2	-1	reviewed	p.Y414	1.000	377	0%	216	33.8%	-	-	-	-	-	NULL
RRAGC	64121	genome.wustl.edu	37	1	39321513	39321513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022157.2	-1	provisional	p.D170Y	1.000	295	0.3%	177	34.5%	-	-	benign(0.148)	deleterious(0.03)	neutral(0.378)	HMMPfam_Gtr1_RagA,superfamily_SSF52540
RHBDL2	54933	genome.wustl.edu	37	1	39384830	39384830	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017821.3	-1	reviewed	p.E19*	0.002	548	0%	342	38%	-	-	-	-	-	NULL
NDUFS5	4725	genome.wustl.edu	37	1	39494601	39494601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004552.2	+1	reviewed	p.R69W	0.998	288	0%	141	41.1%	-	-	benign(0.058)	deleterious(0)	neutral(0.448)	HMMPfam_Ndufs5
MACF1	23499	genome.wustl.edu	37	1	39750856	39750856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012090.3	+1	reviewed	p.E416D	1.000	571	0%	330	16.4%	-	-	probably_damaging(0.988)	tolerated(0.06)	deleterious(0.760)	superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39765917	39765917	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012090.3	+1	reviewed	p.S844	0.003	445	0%	231	32.5%	-	-	-	-	-	superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39775998	39775998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012090.3	+1	reviewed	p.R1005C	0.989	300	0%	164	29.9%	-	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39797658	39797658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.A240S	1.000	171	0.6%	113	40.7%	-	-	probably_damaging(0.971)	-	-	HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399
MACF1	23499	genome.wustl.edu	37	1	39799331	39799331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.E797D	1.000	152	0%	79	32.9%	-	-	possibly_damaging(0.787)	-	-	HMMSmart_PLEC,superfamily_SSF75399
MACF1	23499	genome.wustl.edu	37	1	39801531	39801531	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.R1531*	0.003	80	0%	33	18.2%	-	-	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39844924	39844924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372925	+1	known	p.E1493*	0.999	235	0%	101	34.7%	-	-	benign(0.006)	tolerated(0.14)	neutral(0.249)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39914355	39914355	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372925	+1	known	p.R3671*	0.239	277	0%	123	34.1%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PABPC4	8761	genome.wustl.edu	37	1	40041582	40041582	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135653.1	-1	reviewed	p.Y14	1.000	18	0%	17	29.4%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
NT5C1A	84618	genome.wustl.edu	37	1	40131251	40131251	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032526.1	-1	provisional	p.L125	0.010	143	0%	127	33.1%	-	-	-	-	-	HMMPfam_5-nucleotidase
PPIE	10450	genome.wustl.edu	37	1	40214724	40214724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006112.2	+1	reviewed	p.D220N	1.000	169	0.6%	84	14.3%	-	-	benign(0.077)	tolerated(0.47)	neutral(0.017)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
MYCL1	4610	genome.wustl.edu	37	1	40363540	40363540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033081.2	-1	validated	p.M200T	1.000	234	0%	134	32.8%	-	-	probably_damaging(0.954)	tolerated(0.14)	deleterious(0.647)	HMMPfam_Myc_N
MFSD2A	84879	genome.wustl.edu	37	1	40433338	40433338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136493.1	+1	validated	p.F363L	1.000	487	0%	253	24.9%	-	-	benign(0.01)	tolerated(0.91)	neutral(0.001)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
CAP1	10487	genome.wustl.edu	37	1	40535491	40535491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105530.1	+1	reviewed	p.R313Q	0.992	312	0%	145	32.4%	-	-	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
RLF	6018	genome.wustl.edu	37	1	40661412	40661412	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012421.3	+1	validated	p.Q195*	1.000	185	0%	133	10.5%	-	-	-	-	-	NULL
TMCO2	127391	genome.wustl.edu	37	1	40717052	40717052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008740.3	+1	validated	p.R112Q	0.000	240	0%	115	21.7%	-	-	benign(0.058)	tolerated(0.59)	neutral(0.008)	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40756564	40756564	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005857.3	+1	reviewed	p.L366F	0.999	696	0%	366	37.4%	-	-	benign(0.067)	tolerated(0.06)	neutral(0.327)	HMMPfam_Peptidase_M48
SMAP2	64744	genome.wustl.edu	37	1	40875439	40875439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022733.1	+1	provisional	p.G112R	1.000	371	0%	202	25.2%	-	-	probably_damaging(0.983)	tolerated(0.35)	neutral(0.450)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
ZNF643	65243	genome.wustl.edu	37	1	40929140	40929140	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411995	+1	known	p.E468*	0.999	188	0.5%	95	42.1%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DEM1	64789	genome.wustl.edu	37	1	40981249	40981249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022774.1	+1	provisional	p.T345A	0.060	88	0%	49	36.7%	-	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	HMMPfam_Morph_protein1
KCNQ4	9132	genome.wustl.edu	37	1	41285896	41285896	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509682	+1	known	p.R255*	0.986	79	1.3%	52	34.6%	-	-	-	-	-	superfamily_Voltage-gated potassium channels
KCNQ4	9132	genome.wustl.edu	37	1	41303994	41303994	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509682	+1	known	p.R495*	1.000	48	0%	40	25%	-	-	-	-	-	HMMPfam_KCNQ_channel
CTPS	1503	genome.wustl.edu	37	1	41463065	41463065	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001905.2	+1	validated	e8-1	1.000	130	0%	83	34.9%	-	-	-	-	-	-
SCMH1	22955	genome.wustl.edu	37	1	41499701	41499701	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031694.2	-1	validated	p.N556	0.111	377	0%	259	33.6%	-	-	-	-	-	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42657345	42657345	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014947.3	-1	validated	p.S327*	1.000	947	0.1%	534	30%	-	-	-	-	-	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42660606	42660606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014947.3	-1	validated	p.R297W	1.000	448	0%	241	31.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43110467	43110467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080850.2	+1	validated	p.R627C	0.000	251	0%	155	12.3%	-	-	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	NULL
WDR65	149465	genome.wustl.edu	37	1	43638490	43638490	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152498.3	+1	validated	p.I22	0.998	224	0%	159	37.1%	-	-	-	-	-	NULL
WDR65	149465	genome.wustl.edu	37	1	43638511	43638511	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152498.3	+1	validated	p.I29	0.098	231	0%	134	35.1%	-	-	-	-	-	NULL
WDR65	149465	genome.wustl.edu	37	1	43665147	43665147	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152498.3	+1	validated	p.I505	0.583	321	0%	205	41%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
MPL	4352	genome.wustl.edu	37	1	43805739	43805739	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005373.2	+1	reviewed	p.L265	0.708	129	0.8%	97	38.1%	-	-	-	-	-	superfamily_Fibronectin type III
ST3GAL3	6487	genome.wustl.edu	37	1	44257776	44257776	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174963.2	+1	reviewed	p.S56*	1.000	463	0%	233	39.5%	-	-	-	-	-	NULL
ST3GAL3	6487	genome.wustl.edu	37	1	44360121	44360121	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174963.2	+1	reviewed	p.F192	0.998	280	0%	156	37.2%	-	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Glyco_transf_29
IPO13	9670	genome.wustl.edu	37	1	44422916	44422916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014652.3	+1	reviewed	p.E441K	1.000	96	0%	46	47.8%	-	-	possibly_damaging(0.848)	tolerated(0.27)	neutral(0.359)	superfamily_ARM-type_fold
CCDC24	149473	genome.wustl.edu	37	1	44461300	44461300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152499.1	+1	provisional	p.P194S	0.002	51	0%	37	18.9%	-	-	benign(0.135)	tolerated(0.35)	neutral(0.032)	NULL
SLC6A9	6536	genome.wustl.edu	37	1	44466898	44466898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201649.2	-1	validated	p.T498A	1.000	204	0%	121	35.5%	-	-	benign(0.003)	tolerated(0.74)	neutral(0.002)	HMMPfam_SNF
SLC6A9	6536	genome.wustl.edu	37	1	44468262	44468262	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201649.2	-1	validated	p.R333	0.002	104	0%	110	34.5%	-	-	-	-	-	HMMPfam_SNF
C1orf228	339541	genome.wustl.edu	37	1	45189803	45189803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145636.1	+1	validated	p.L245S	1.000	124	0%	88	34.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM repeat
KIF2C	11004	genome.wustl.edu	37	1	45216193	45216193	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006845.3	+1	validated	p.E132	0.854	69	0%	77	50.6%	-	-	-	-	-	NULL
KIF2C	11004	genome.wustl.edu	37	1	45221766	45221766	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006845.3	+1	validated	p.I278	1.000	247	0%	175	34.3%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF2C	11004	genome.wustl.edu	37	1	45232824	45232824	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006845.3	+1	validated	p.Q717H	1.000	273	0%	128	40.6%	-	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
PTCH2	8643	genome.wustl.edu	37	1	45288829	45288829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003738.4	-1	reviewed	p.A1090V	1.000	170	0.6%	141	31.2%	-	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
PTCH2	8643	genome.wustl.edu	37	1	45295695	45295695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003738.4	-1	reviewed	p.N274S	1.000	74	0%	44	38.6%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Patched
EIF2B3	8891	genome.wustl.edu	37	1	45444090	45444090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020365.3	-1	reviewed	p.C64Y	0.685	491	0%	282	35.5%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	superfamily_Nucleotide-diphospho-sugar transferases
HECTD3	79654	genome.wustl.edu	37	1	45469790	45469790	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024602.5	-1	validated	p.F763	0.995	168	0%	142	39.4%	-	-	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
UROD	7389	genome.wustl.edu	37	1	45481160	45481160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000374.3	+1	reviewed	p.R365Q	0.385	151	0%	120	35%	-	-	possibly_damaging(0.73)	deleterious(0.02)	deleterious(0.649)	superfamily_UROD/MetE-like
ZSWIM5	57643	genome.wustl.edu	37	1	45553826	45553826	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020883.1	-1	validated	p.R227*	1.000	173	0%	92	35.9%	-	-	-	-	-	HMMPfam_SWIM
HPDL	84842	genome.wustl.edu	37	1	45793352	45793352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032756.2	+1	validated	p.R178C	0.998	21	0%	15	26.7%	-	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
TOE1	114034	genome.wustl.edu	37	1	45809317	45809317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025077.3	+1	validated	p.F492L	1.000	122	0%	80	42.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NASP	4678	genome.wustl.edu	37	1	46073249	46073249	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172164.1	+1	reviewed	p.P224	0.029	65	0%	28	32.1%	-	-	-	-	-	superfamily_SSF48452
GPBP1L1	60313	genome.wustl.edu	37	1	46120874	46120874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021639.4	-1	validated	p.R60*	1.000	184	0%	108	37%	-	-	-	-	-	NULL
PIK3R3	8503	genome.wustl.edu	37	1	46509395	46509395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114172.1	-1	validated	p.V446I	1.000	394	0.3%	246	34.1%	-	-	possibly_damaging(0.934)	deleterious(0.04)	deleterious(0.729)	superfamily_SH2 domain
PIK3R3	8503	genome.wustl.edu	37	1	46531836	46531836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114172.1	-1	validated	p.E171*	1.000	426	0%	178	40.4%	-	-	-	-	-	NULL
LRRC41	10489	genome.wustl.edu	37	1	46751281	46751281	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006369.4	-1	validated	p.F416	1.000	232	0%	104	35.6%	-	-	-	-	-	NULL
NSUN4	387338	genome.wustl.edu	37	1	46806569	46806569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199044.2	+1	validated	p.R24I	0.929	54	0%	36	11.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAAH	2166	genome.wustl.edu	37	1	46876526	46876526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001441.2	+1	reviewed	p.R439H	1.000	215	0%	134	32.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidase,superfamily_Amidase_sig_enz
FAAH	2166	genome.wustl.edu	37	1	46877286	46877286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001441.2	+1	reviewed	p.S440L	0.984	126	0%	108	31.5%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Amidase,superfamily_Amidase_sig_enz
CYP4A22	284541	genome.wustl.edu	37	1	47611554	47611554	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010969.2	+1	reviewed	p.L413	0.798	665	0%	358	37.2%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
PDZK1IP1	10158	genome.wustl.edu	37	1	47649649	47649649	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005764.3	-1	validated	p.P113	1.000	228	0%	133	29.3%	-	-	-	-	-	NULL
PDZK1IP1	10158	genome.wustl.edu	37	1	47650691	47650691	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005764.3	-1	validated	p.S85	0.026	273	0%	173	34.7%	-	-	-	-	-	NULL
STIL	6491	genome.wustl.edu	37	1	47746247	47746247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048166.1	-1	reviewed	p.S628F	0.001	195	0%	138	37.7%	-	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
STIL	6491	genome.wustl.edu	37	1	47746274	47746274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048166.1	-1	reviewed	p.S619Y	0.992	197	0%	140	32.9%	-	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
SLC5A9	200010	genome.wustl.edu	37	1	48708252	48708252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135181.1	+1	validated	p.A626T	0.000	45	0%	37	37.8%	-	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
SPATA6	54558	genome.wustl.edu	37	1	48825413	48825413	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019073.1	-1	provisional	p.F313	0.003	142	0.7%	84	42.9%	-	-	-	-	-	NULL
AGBL4	84871	genome.wustl.edu	37	1	49052784	49052784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032785.3	-1	validated	p.L387I	1.000	125	0%	58	32.8%	-	-	possibly_damaging(0.892)	tolerated(0.23)	neutral(0.393)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
BEND5	79656	genome.wustl.edu	37	1	49202048	49202048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024603.2	-1	validated	p.Y324C	1.000	413	0%	270	38.5%	-	-	possibly_damaging(0.66)	deleterious(0)	deleterious(0.677)	HMMPfam_BEN
FAF1	11124	genome.wustl.edu	37	1	51210448	51210448	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007051.2	-1	reviewed	e5-1	1.000	343	0%	201	18.9%	-	-	-	-	-	-
CDKN2C	1031	genome.wustl.edu	37	1	51439761	51439761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001262.2	+1	reviewed	p.L109S	1.000	171	0%	97	10.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
C1orf185	284546	genome.wustl.edu	37	1	51584360	51584360	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136508.1	+1	predicted	p.F49V	0.001	141	0%	75	44%	-	-	possibly_damaging(0.454)	deleterious(0)	deleterious(0.593)	NULL
RNF11	26994	genome.wustl.edu	37	1	51735722	51735722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014372.4	+1	reviewed	p.R73I	1.000	211	0%	74	28.4%	-	-	possibly_damaging(0.773)	deleterious(0)	deleterious(0.732)	NULL
TTC39A	22996	genome.wustl.edu	37	1	51753908	51753908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144832.1	-1	validated	p.R556Q	1.000	539	0%	428	41.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
OSBPL9	114883	genome.wustl.edu	37	1	52246872	52246872	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447887	+1	known	p.S448P	0.996	325	0%	201	35.3%	-	-	-	-	-	HMMPfam_Oxysterol_BP
NRD1	4898	genome.wustl.edu	37	1	52344197	52344197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002525.2	-1	validated	p.E31K	0.000	70	1.4%	55	29.1%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52704037	52704037	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004799.2	+1	reviewed	p.G316	0.000	126	0%	50	36%	-	-	-	-	-	NULL
CC2D1B	200014	genome.wustl.edu	37	1	52821327	52821327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032449.1	-1	validated	p.D720N	0.998	161	0%	79	36.7%	-	-	benign(0)	tolerated(1)	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CC2D1B	200014	genome.wustl.edu	37	1	52824424	52824424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032449.1	-1	validated	p.Q422K	1.000	180	0%	104	12.5%	-	-	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	HMMSmart_SM00685
ZCCHC11	23318	genome.wustl.edu	37	1	52991555	52991555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009881.1	-1	validated	p.K133T	0.999	534	0%	242	37.6%	-	-	possibly_damaging(0.477)	tolerated(0.05)	deleterious(0.503)	NULL
GPX7	2882	genome.wustl.edu	37	1	53072580	53072580	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015696.4	+1	validated	p.T121	0.190	161	0%	122	41%	-	-	-	-	-	HMMPfam_GSHPx,superfamily_Thiordxn-like_fd
FAM159A	348378	genome.wustl.edu	37	1	53122677	53122677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042693.1	+1	validated	p.V180L	0.586	135	0%	77	14.3%	-	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
ZYG11B	79699	genome.wustl.edu	37	1	53282302	53282302	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024646.2	+1	validated	e13+1	1.000	263	0%	140	40.7%	-	-	-	-	-	-
SCP2	6342	genome.wustl.edu	37	1	53443889	53443889	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002979.3	+1	reviewed	p.C225	0.985	217	0%	128	35.9%	-	-	-	-	-	HMMPfam_Thiolase_N,superfamily_Thiolase-like
SCP2	6342	genome.wustl.edu	37	1	53446158	53446158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002979.3	+1	reviewed	p.D306N	1.000	356	0%	137	38.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thiolase_C,superfamily_Thiolase-like
PODN	127435	genome.wustl.edu	37	1	53542922	53542922	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153703.3	+1	validated	p.N262	0.850	67	0%	39	23.1%	-	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
SLC1A7	6512	genome.wustl.edu	37	1	53556395	53556395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006671.4	-1	validated	p.V372A	1.000	128	0%	98	31.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_2
TMEM48	55706	genome.wustl.edu	37	1	54266435	54266435	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018087.4	-1	validated	p.E385*	1.000	335	0%	194	39.7%	-	-	-	-	-	HMMPfam_Ndc1_Nup
YIPF1	54432	genome.wustl.edu	37	1	54337097	54337097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018982.3	-1	provisional	p.F143L	1.000	185	0%	88	40.9%	-	-	benign(0.163)	deleterious(0.04)	neutral(0.363)	HMMPfam_Yip1
MRPL37	51253	genome.wustl.edu	37	1	54666157	54666157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016491.3	+1	reviewed	p.G81S	0.979	36	0%	31	41.9%	-	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
ACOT11	26027	genome.wustl.edu	37	1	55069559	55069559	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015547.2	+1	reviewed	p.S367	1.000	88	0%	43	39.5%	-	-	-	-	-	NULL
FAM151A	338094	genome.wustl.edu	37	1	55075349	55075349	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176782.2	-1	validated	p.G450	0.176	54	0%	61	32.8%	-	-	-	-	-	NULL
HEATR8	374977	genome.wustl.edu	37	1	55145675	55145675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039464.2	+1	validated	p.E780K	0.999	64	0%	61	31.1%	-	-	possibly_damaging(0.942)	deleterious(0.02)	deleterious(0.770)	superfamily_ARM repeat
HEATR8	374977	genome.wustl.edu	37	1	55158151	55158151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039464.2	+1	validated	p.E922D	0.866	178	0%	96	32.3%	-	-	possibly_damaging(0.942)	tolerated(0.35)	neutral(0.408)	superfamily_ARM repeat
HEATR8	374977	genome.wustl.edu	37	1	55166953	55166953	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039464.2	+1	validated	p.V1081	0.921	159	0%	117	36.8%	-	-	-	-	-	superfamily_ARM repeat
PARS2	25973	genome.wustl.edu	37	1	55223619	55223619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152268.3	-1	validated	p.G406R	0.938	131	0%	132	40.9%	-	-	probably_damaging(0.98)	tolerated(0.24)	neutral(0.461)	HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS
USP24	23358	genome.wustl.edu	37	1	55589185	55589185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015306.2	-1	validated	p.S1244L	0.996	168	0%	122	35.2%	-	-	benign(0.002)	tolerated(0.33)	neutral(0.024)	NULL
USP24	23358	genome.wustl.edu	37	1	55590163	55590163	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015306.2	-1	validated	p.R1207*	1.000	185	0%	114	42.1%	-	-	-	-	-	NULL
PRKAA2	5563	genome.wustl.edu	37	1	57140093	57140093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006252.3	+1	validated	p.K45R	1.000	185	0%	88	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PRKAA2	5563	genome.wustl.edu	37	1	57157092	57157092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006252.3	+1	validated	p.D88Y	1.000	373	0%	164	23.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
C8A	731	genome.wustl.edu	37	1	57349331	57349331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000562.2	+1	reviewed	p.E278K	0.004	143	0%	60	38.3%	-	-	benign(0)	tolerated(1)	-	HMMPfam_MACPF
C8A	731	genome.wustl.edu	37	1	57351676	57351676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000562.2	+1	reviewed	p.D311G	1.000	191	0%	91	34.1%	-	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	HMMPfam_MACPF,HMMSmart_MACPF
DAB1	1600	genome.wustl.edu	37	1	57602267	57602267	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021080.3	-1	reviewed	p.I85	1.000	331	0%	180	37.8%	-	-	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
OMA1	115209	genome.wustl.edu	37	1	59004633	59004633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145243.3	-1	provisional	p.E112*	0.000	254	0%	149	35.6%	-	-	-	-	-	NULL
TACSTD2	4070	genome.wustl.edu	37	1	59042031	59042031	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002353.2	-1	reviewed	p.P266	0.016	85	0%	74	43.2%	-	-	-	-	-	NULL
MYSM1	114803	genome.wustl.edu	37	1	59147935	59147935	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085487.1	-1	provisional	p.E261*	0.005	161	0%	123	36.6%	-	-	-	-	-	NULL
HOOK1	51361	genome.wustl.edu	37	1	60294487	60294487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371208	+1	known	p.R62Q	1.000	471	0%	184	11.4%	-	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_HOOK
HOOK1	51361	genome.wustl.edu	37	1	60305991	60305991	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371208	+1	known	p.A183	0.409	292	0%	138	30.4%	-	-	-	-	-	HMMPfam_HOOK
HOOK1	51361	genome.wustl.edu	37	1	60309246	60309246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371208	+1	known	p.E255G	1.000	162	0%	71	40.8%	-	-	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	HMMPfam_HOOK,superfamily_Prefoldin
HOOK1	51361	genome.wustl.edu	37	1	60314041	60314041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371208	+1	known	p.Q328H	1.000	174	0%	67	47.8%	-	-	benign(0.223)	deleterious(0.01)	neutral(0.428)	HMMPfam_HOOK
HOOK1	51361	genome.wustl.edu	37	1	60338599	60338599	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371208	+1	known	p.N717H	0.898	91	0%	38	31.6%	-	-	possibly_damaging(0.565)	deleterious(0.01)	deleterious(0.599)	HMMPfam_HOOK
INADL	10207	genome.wustl.edu	37	1	62327232	62327232	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176877.2	+1	reviewed	p.E778*	0.998	100	0%	50	32%	-	-	-	-	-	NULL
INADL	10207	genome.wustl.edu	37	1	62593692	62593692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176877.2	+1	reviewed	p.P1698S	1.000	295	0%	154	33.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
L1TD1	54596	genome.wustl.edu	37	1	62672944	62672944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.R215I	0.000	146	0%	41	58.5%	-	-	unknown(0)	deleterious(0)	-	NULL
L1TD1	54596	genome.wustl.edu	37	1	62675646	62675646	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.T400	0.000	134	0.7%	57	35.1%	-	-	-	-	-	NULL
L1TD1	54596	genome.wustl.edu	37	1	62676465	62676465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.F673L	0.000	134	0%	44	45.5%	-	-	benign(0.101)	tolerated(0.95)	neutral(0.007)	HMMPfam_Transposase_22
L1TD1	54596	genome.wustl.edu	37	1	62676979	62676979	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.E845*	0.093	74	0%	36	38.9%	-	-	-	-	-	HMMPfam_Transposase_22
KANK4	163782	genome.wustl.edu	37	1	62728833	62728833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181712.4	-1	validated	p.G824R	1.000	184	0%	79	41.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
KANK4	163782	genome.wustl.edu	37	1	62739866	62739866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181712.4	-1	validated	p.E304K	0.998	179	0%	99	39.4%	-	-	possibly_damaging(0.918)	tolerated(0.1)	deleterious(0.655)	NULL
DOCK7	85440	genome.wustl.edu	37	1	62993879	62993879	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454575	-1	known	p.R465C	0.780	270	0%	145	32.4%	-	-	-	-	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	63005433	63005433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033407.2	-1	validated	p.R1028Q	1.000	153	0%	78	30.8%	-	-	probably_damaging(0.97)	tolerated(0.09)	deleterious(0.709)	NULL
DOCK7	85440	genome.wustl.edu	37	1	63018423	63018423	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033407.2	-1	validated	p.R916*	0.998	175	0.6%	104	40.4%	-	-	-	-	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	63052296	63052296	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033407.2	-1	validated	e15-1	1.000	310	0%	175	38.9%	-	-	-	-	-	-
ATG4C	84938	genome.wustl.edu	37	1	63269479	63269479	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032852.2	+1	reviewed	p.E8*	1.000	202	0%	102	40.2%	-	-	-	-	-	NULL
ATG4C	84938	genome.wustl.edu	37	1	63329670	63329670	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032852.2	+1	reviewed	p.K406I	0.928	139	0%	93	38.7%	-	-	benign(0.039)	tolerated(0.49)	neutral(0.013)	NULL
PGM1	5236	genome.wustl.edu	37	1	64097386	64097386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002633.2	+1	reviewed	p.F205L	1.000	262	0%	167	32.3%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase first 3 domains
CACHD1	57685	genome.wustl.edu	37	1	65141661	65141661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020925.2	+1	validated	p.E939D	1.000	108	0%	50	30%	-	-	benign(0.041)	tolerated(0.45)	neutral(0.015)	NULL
CACHD1	57685	genome.wustl.edu	37	1	65146953	65146953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020925.2	+1	validated	p.R1089H	1.000	428	0.2%	274	35.8%	-	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
LEPROT	54741	genome.wustl.edu	37	1	65895679	65895679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017526.3	+1	validated	p.G76E	1.000	1043	0%	519	35.3%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Vps55
PDE4B	5142	genome.wustl.edu	37	1	66828886	66828886	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037341.1	+1	reviewed	p.I352	1.000	302	0%	116	28.4%	-	-	-	-	-	superfamily_HD-domain/PDEase-like
PDE4B	5142	genome.wustl.edu	37	1	66831424	66831424	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037341.1	+1	reviewed	p.V453	1.000	260	0%	167	20.4%	-	-	-	-	-	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
SGIP1	84251	genome.wustl.edu	37	1	67109251	67109251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032291.2	+1	validated	p.S103Y	1.000	197	0%	122	31.1%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
SGIP1	84251	genome.wustl.edu	37	1	67195044	67195044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032291.2	+1	validated	p.R614W	1.000	355	0%	175	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAFF
SGIP1	84251	genome.wustl.edu	37	1	67207009	67207009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032291.2	+1	validated	p.S785Y	1.000	286	0%	178	28.1%	-	-	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	NULL
C1orf141	400757	genome.wustl.edu	37	1	67591445	67591445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013674.1	-1	predicted	p.K75E	0.004	721	0%	397	41.6%	-	-	possibly_damaging(0.866)	tolerated(0.28)	neutral(0.367)	NULL
IL23R	149233	genome.wustl.edu	37	1	67724616	67724616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144701.2	+1	reviewed	p.N565K	0.001	99	0%	59	27.1%	-	-	benign(0.224)	deleterious(0.01)	neutral(0.428)	NULL
SERBP1	26135	genome.wustl.edu	37	1	67890841	67890841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018067.1	-1	validated	p.R177H	1.000	272	0%	97	37.1%	-	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
WLS	79971	genome.wustl.edu	37	1	68697907	68697907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002292.2	-1	validated	p.I26F	0.995	373	0%	182	37.4%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
DEPDC1	55635	genome.wustl.edu	37	1	68948516	68948516	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114120.1	-1	validated	p.P325	1.000	156	0%	73	30.1%	-	-	-	-	-	superfamily_Rho_GAP
LRRC7	57554	genome.wustl.edu	37	1	70504377	70504377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.S919F	1.000	106	0%	60	28.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
LRRC40	55631	genome.wustl.edu	37	1	70618139	70618139	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017768.4	-1	validated	p.Q472	0.178	195	0%	67	25.4%	-	-	-	-	-	superfamily_SSF52058
LRRC40	55631	genome.wustl.edu	37	1	70639166	70639166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017768.4	-1	validated	p.L365I	1.000	204	0%	86	32.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTH	1491	genome.wustl.edu	37	1	70887300	70887300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001902.4	+1	reviewed	p.S133Y	1.000	518	0%	262	35.1%	-	-	possibly_damaging(0.455)	deleterious(0.01)	deleterious(0.554)	HMMPfam_Cys_Met_Meta_PP,superfamily_PLP-dependent transferases
PTGER3	5733	genome.wustl.edu	37	1	71478168	71478168	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198718.1	-1	reviewed	e2-1	1.000	130	0%	78	12.8%	-	-	-	-	-	-
ZRANB2	9406	genome.wustl.edu	37	1	71534983	71534983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203350.1	-1	validated	p.S249L	1.000	215	0%	112	70.5%	-	-	unknown(0)	tolerated(0.09)	-	NULL
NEGR1	257194	genome.wustl.edu	37	1	72400932	72400932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173808.2	-1	validated	p.A80V	1.000	344	0%	173	39.3%	-	-	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
LRRIQ3	127255	genome.wustl.edu	37	1	74507089	74507089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105659.1	-1	provisional	p.S509F	0.000	137	0%	75	26.7%	-	-	possibly_damaging(0.548)	deleterious(0)	deleterious(0.631)	NULL
TNNI3K	51086	genome.wustl.edu	37	1	74808843	74808843	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112808.1	+1	validated	p.F405	1.000	239	0%	140	32.9%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SLC44A5	204962	genome.wustl.edu	37	1	75702739	75702739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152697.4	-1	validated	p.L225I	0.700	217	0%	85	31.8%	-	-	benign(0.012)	tolerated(0.22)	neutral(0.043)	NULL
SLC44A5	204962	genome.wustl.edu	37	1	75740692	75740692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152697.4	-1	validated	p.P71S	1.000	181	0%	87	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACADM	34	genome.wustl.edu	37	1	76226898	76226898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127328.1	+1	reviewed	p.S350Y	0.016	309	0%	152	40.1%	-	-	benign(0.295)	deleterious(0)	deleterious(0.536)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
RABGGTB	5876	genome.wustl.edu	37	1	76253277	76253277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004582.2	+1	provisional	p.K33N	1.000	308	0%	161	41.6%	-	-	benign(0.011)	tolerated(0.27)	neutral(0.034)	superfamily_Terpenoid cyclases/Protein prenyltransferases
MSH4	4438	genome.wustl.edu	37	1	76288207	76288207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.R368I	1.000	164	0.6%	71	35.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII
MSH4	4438	genome.wustl.edu	37	1	76355016	76355016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.E730K	1.000	133	0%	76	27.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
MSH4	4438	genome.wustl.edu	37	1	76378515	76378515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.K918N	1.000	166	0%	43	27.9%	-	-	benign(0.183)	tolerated(0.37)	neutral(0.036)	NULL
PIGK	10026	genome.wustl.edu	37	1	77672385	77672385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005482.2	-1	reviewed	p.R60Q	1.000	290	0%	90	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C13
AK5	26289	genome.wustl.edu	37	1	77987619	77987619	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174858.1	+1	reviewed	p.F473	0.970	171	0%	75	37.3%	-	-	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZZZ3	26009	genome.wustl.edu	37	1	78098918	78098918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015534.4	-1	provisional	p.S41Y	1.000	255	0%	149	31.5%	-	-	possibly_damaging(0.677)	deleterious(0.04)	deleterious(0.590)	NULL
NEXN	91624	genome.wustl.edu	37	1	78383885	78383885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144573.3	+1	reviewed	p.R125Q	1.000	544	0%	154	36.4%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
NEXN	91624	genome.wustl.edu	37	1	78408308	78408308	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144573.3	+1	reviewed	p.E608*	1.000	272	0%	154	38.3%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
GIPC2	54810	genome.wustl.edu	37	1	78560637	78560637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017655.4	+1	validated	p.R143I	1.000	424	0%	194	35.6%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
GIPC2	54810	genome.wustl.edu	37	1	78560749	78560749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017655.4	+1	validated	p.K180N	0.999	559	0%	231	35.9%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
IFI44L	10964	genome.wustl.edu	37	1	79093889	79093889	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006820.2	+1	validated	p.E97*	0.000	148	0%	70	35.7%	-	-	-	-	-	NULL
IFI44	10561	genome.wustl.edu	37	1	79121183	79121183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006417.4	+1	validated	p.R276H	0.037	210	0.5%	107	37.4%	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	superfamily_SSF52540
ENSG00000249107	0	genome.wustl.edu	37	1	79129500	79129500	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513923	-1	known	NULL	0.000	452	0%	240	28.7%	-	-	-	-	-	-
ENSG00000249107	0	genome.wustl.edu	37	1	79129612	79129612	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513923	-1	known	NULL	0.006	123	0%	71	35.2%	-	-	-	-	-	-
ELTD1	64123	genome.wustl.edu	37	1	79385982	79385982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022159.3	-1	validated	p.F449L	1.000	342	0%	151	12.6%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_7tm_2
ELTD1	64123	genome.wustl.edu	37	1	79403873	79403873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022159.3	-1	validated	p.I163T	0.843	317	0%	133	37.6%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	PatternScan_EF_HAND_1
LPHN2	23266	genome.wustl.edu	37	1	82408979	82408979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012302.2	+1	reviewed	p.E242K	1.000	263	0%	179	20.7%	-	-	benign(0.092)	tolerated(0.07)	neutral(0.326)	HMMPfam_OLF,HMMSmart_SM00284
LPHN2	23266	genome.wustl.edu	37	1	82434986	82434986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012302.2	+1	reviewed	p.R866Q	1.000	495	0.2%	309	34.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
TTLL7	79739	genome.wustl.edu	37	1	84408303	84408303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024686.4	-1	validated	p.E189G	1.000	110	0%	60	43.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
TTLL7	79739	genome.wustl.edu	37	1	84412924	84412924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024686.4	-1	validated	p.R130Q	1.000	368	0%	189	31.7%	-	-	benign(0.309)	tolerated(0.1)	neutral(0.383)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
SAMD13	148418	genome.wustl.edu	37	1	84768895	84768896	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010971.2	+1	validated	p.E9fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SSX2IP	117178	genome.wustl.edu	37	1	85116192	85116192	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014021.3	-1	reviewed	p.L508R	0.165	175	0%	122	44.3%	-	-	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
MCOLN2	255231	genome.wustl.edu	37	1	85403521	85403521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153259.2	-1	reviewed	p.L418I	0.983	301	0%	133	33.1%	-	-	benign(0.135)	tolerated(0.51)	neutral(0.020)	HMMPfam_Ion_trans
MCOLN2	255231	genome.wustl.edu	37	1	85424236	85424236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153259.2	-1	reviewed	p.E129D	0.986	144	0%	69	36.2%	-	-	benign(0)	tolerated(1)	-	NULL
WDR63	126820	genome.wustl.edu	37	1	85573739	85573739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145172.3	+1	validated	p.R526I	0.999	222	0%	94	36.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
SYDE2	84144	genome.wustl.edu	37	1	85643847	85643847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032184.1	-1	validated	p.D885Y	1.000	354	0%	153	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SYDE2	84144	genome.wustl.edu	37	1	85648038	85648038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032184.1	-1	validated	p.T763A	1.000	237	0%	125	31.2%	-	-	possibly_damaging(0.506)	tolerated(0.09)	neutral(0.466)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SYDE2	84144	genome.wustl.edu	37	1	85648160	85648160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032184.1	-1	validated	p.R722Q	1.000	188	0%	93	28%	-	-	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ZNHIT6	54680	genome.wustl.edu	37	1	86144391	86144391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017953.3	-1	validated	p.R388C	1.000	405	0%	178	30.9%	-	-	possibly_damaging(0.843)	deleterious(0.02)	deleterious(0.706)	NULL
ZNHIT6	54680	genome.wustl.edu	37	1	86171989	86171989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017953.3	-1	validated	p.R258*	0.999	493	0%	283	25.1%	-	-	-	-	-	NULL
COL24A1	255631	genome.wustl.edu	37	1	86334285	86334285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.P1073S	1.000	504	0%	213	38%	-	-	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_Collagen
COL24A1	255631	genome.wustl.edu	37	1	86591121	86591121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.T300A	0.000	304	0.7%	162	34.6%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
CLCA2	9635	genome.wustl.edu	37	1	86921103	86921103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006536.5	+1	reviewed	p.A909S	0.070	399	0%	191	13.6%	-	-	benign(0.06)	tolerated(0.32)	neutral(0.028)	NULL
CLCA2	9635	genome.wustl.edu	37	1	86921123	86921123	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006536.5	+1	reviewed	p.I915	0.005	353	0%	163	35%	-	-	-	-	-	NULL
CLCA1	1179	genome.wustl.edu	37	1	86959955	86959955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001285.3	+1	reviewed	p.P589H	1.000	369	0%	188	39.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF1973
CLCA4	22802	genome.wustl.edu	37	1	87025978	87025978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012128.3	+1	reviewed	p.E129K	0.995	389	0%	154	40.3%	-	-	benign(0.008)	tolerated(0.63)	neutral(0.004)	HMMPfam_CLCA_N
CLCA4	22802	genome.wustl.edu	37	1	87040231	87040231	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012128.3	+1	reviewed	p.S492	0.442	57	0%	51	33.3%	-	-	-	-	-	HMMPfam_DUF1973
SH3GLB1	51100	genome.wustl.edu	37	1	87200775	87200775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016009.3	+1	validated	p.R225H	1.000	351	0%	185	31.4%	-	-	possibly_damaging(0.644)	deleterious(0.02)	deleterious(0.609)	HMMPfam_BAR,HMMSmart_SM00721
LMO4	8543	genome.wustl.edu	37	1	87797929	87797929	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006769.3	+1	reviewed	p.Y77	1.000	113	0%	60	23.3%	-	-	-	-	-	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PKN2	5586	genome.wustl.edu	37	1	89225904	89225904	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006256.2	+1	validated	e3-1	1.000	96	0%	42	31%	-	-	-	-	-	-
GBP3	2635	genome.wustl.edu	37	1	89479027	89479027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018284.2	-1	reviewed	p.D237N	0.229	293	0%	137	28.5%	-	-	benign(0.389)	tolerated(0.1)	neutral(0.411)	superfamily_SSF52540
GBP1	2633	genome.wustl.edu	37	1	89524697	89524697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002053.2	-1	validated	p.R153Q	0.276	377	0%	192	35.9%	-	-	benign(0.192)	deleterious(0.02)	neutral(0.401)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
GBP7	388646	genome.wustl.edu	37	1	89597960	89597960	+	Missense_Mutation	SNP	G	G	T	rs143373731		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207398.2	-1	validated	p.L597I	0.000	424	0%	202	28.7%	-	-	benign(0.088)	tolerated(0.09)	neutral(0.303)	NULL
GBP7	388646	genome.wustl.edu	37	1	89613337	89613337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207398.2	-1	validated	p.F426L	0.945	511	0%	247	38.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
LRRC8C	84230	genome.wustl.edu	37	1	90178335	90178335	+	Missense_Mutation	SNP	C	C	T	rs148090493	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032270.4	+1	validated	p.S69L	0.014	227	0%	112	21.4%	-	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
LRRC8C	84230	genome.wustl.edu	37	1	90179580	90179580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032270.4	+1	validated	p.A484V	0.950	165	0%	109	39.4%	-	-	benign(0.064)	tolerated(0.11)	neutral(0.276)	superfamily_L domain-like
LRRC8C	84230	genome.wustl.edu	37	1	90180367	90180367	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032270.4	+1	validated	p.P746	0.972	220	0%	121	37.2%	-	-	-	-	-	superfamily_L domain-like
LRRC8D	55144	genome.wustl.edu	37	1	90399924	90399924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134479.1	+1	validated	p.R433C	1.000	118	0%	63	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90400233	90400233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134479.1	+1	validated	p.R536C	1.000	102	0%	53	20.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
LRRC8D	55144	genome.wustl.edu	37	1	90400490	90400490	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134479.1	+1	validated	p.D621	1.000	143	0%	82	34.1%	-	-	-	-	-	superfamily_SSF52058
BARHL2	343472	genome.wustl.edu	37	1	91182450	91182450	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020063.1	-1	validated	p.P101	0.730	41	0%	24	37.5%	-	-	-	-	-	NULL
ZNF644	84146	genome.wustl.edu	37	1	91404000	91404000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.T971A	1.000	351	0%	175	26.9%	-	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF644	84146	genome.wustl.edu	37	1	91404360	91404360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.D851N	1.000	176	0%	84	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF644	84146	genome.wustl.edu	37	1	91405698	91405698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.E405K	1.000	195	0%	104	36.5%	-	-	benign(0.117)	deleterious(0.02)	neutral(0.393)	superfamily_C2H2 and C2HC zinc fingers
ZNF644	84146	genome.wustl.edu	37	1	91406039	91406039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.R291I	1.000	248	0%	143	28.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HFM1	164045	genome.wustl.edu	37	1	91742281	91742281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017975.3	-1	validated	p.Q1164H	1.000	153	0%	63	17.5%	-	-	possibly_damaging(0.835)	deleterious(0.03)	deleterious(0.683)	NULL
HFM1	164045	genome.wustl.edu	37	1	91788523	91788523	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017975.3	-1	validated	p.E856*	1.000	175	0%	66	31.8%	-	-	-	-	-	HMMPfam_Sec63
HFM1	164045	genome.wustl.edu	37	1	91866623	91866623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017975.3	-1	validated	p.D6A	0.960	152	0%	58	48.3%	-	-	benign(0.004)	-	-	NULL
TGFBR3	7049	genome.wustl.edu	37	1	92149341	92149341	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003243.3	-1	validated	p.I837	0.527	125	0%	68	35.3%	-	-	-	-	-	NULL
TGFBR3	7049	genome.wustl.edu	37	1	92200488	92200488	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003243.3	-1	validated	p.S138*	0.978	370	0%	231	36.4%	-	-	-	-	-	NULL
BRDT	676	genome.wustl.edu	37	1	92442940	92442940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001726.3	+1	validated	p.G320V	1.000	23	0%	20	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BRDT	676	genome.wustl.edu	37	1	92443793	92443793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001726.3	+1	validated	p.M346I	1.000	207	0%	124	33.1%	-	-	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BRDT	676	genome.wustl.edu	37	1	92446360	92446360	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001726.3	+1	validated	p.K483T	0.961	263	0%	95	36.8%	-	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
KIAA1107	23285	genome.wustl.edu	37	1	92646421	92646421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015237.2	+1	validated	p.E623*	0.000	75	0%	50	22%	-	-	-	-	-	NULL
KIAA1107	23285	genome.wustl.edu	37	1	92647157	92647157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015237.2	+1	validated	p.T868I	1.000	94	0%	74	29.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C1orf146	388649	genome.wustl.edu	37	1	92710373	92710373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012425.1	+1	validated	p.N123H	1.000	224	0%	130	16.2%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
RPL5	6125	genome.wustl.edu	37	1	93303176	93303176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000969.3	+1	reviewed	p.V231I	0.844	31	0%	28	21.4%	-	-	benign(0.002)	tolerated(1)	-	superfamily_Translational machinery components
FNBP1L	54874	genome.wustl.edu	37	1	93988988	93988988	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000271234	+1	known	p.A94	0.058	455	0%	216	36.1%	-	-	-	-	-	NULL
BCAR3	8412	genome.wustl.edu	37	1	94027965	94027965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003567.2	-1	reviewed	p.D771N	1.000	277	0%	157	36.9%	-	-	possibly_damaging(0.748)	tolerated(0.6)	neutral(0.279)	HMMSmart_SM00147
LOC100129046	100129046	genome.wustl.edu	37	1	94054806	94054806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726861.2	+1	model	p.E47K	0.995	79	0%	56	28.6%	-	-	-	-	-	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94335422	94335422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014597.3	-1	provisional	p.K752N	1.000	445	0%	204	30.4%	-	-	unknown(0)	deleterious(0.01)	-	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94337679	94337679	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014597.3	-1	provisional	p.P672	0.875	477	0.2%	227	37.9%	-	-	-	-	-	HMMPfam_Fcf2
DNTTIP2	30836	genome.wustl.edu	37	1	94342568	94342568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014597.3	-1	provisional	p.D308G	0.045	292	0%	162	37.7%	-	-	benign(0.323)	deleterious(0)	deleterious(0.545)	NULL
ABCA4	24	genome.wustl.edu	37	1	94502832	94502832	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.E1228*	1.000	199	0%	125	32.8%	-	-	-	-	-	NULL
ABCA4	24	genome.wustl.edu	37	1	94508437	94508437	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.L1070	1.000	108	0%	72	37.5%	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540
ABCA4	24	genome.wustl.edu	37	1	94522371	94522371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.R723I	0.034	209	0%	98	35.7%	-	-	possibly_damaging(0.604)	deleterious(0.01)	deleterious(0.615)	NULL
ABCA4	24	genome.wustl.edu	37	1	94578619	94578619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.R24C	1.000	160	0%	73	32.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94639778	94639778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004815.3	-1	validated	p.D1145Y	0.980	231	0%	187	16.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ABCD3	5825	genome.wustl.edu	37	1	94944094	94944094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122674.1	+1	reviewed	p.I233M	0.004	74	0%	38	42.1%	-	-	benign(0.01)	tolerated(0.59)	neutral(0.005)	HMMPfam_ABC_membrane_2
F3	2152	genome.wustl.edu	37	1	94997962	94997962	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001993.4	-1	reviewed	p.Q222H	0.973	453	0%	237	37.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_FN_III-like
CNN3	1266	genome.wustl.edu	37	1	95369040	95369040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001839.3	-1	validated	p.R33H	1.000	181	0%	116	41.4%	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
PTBP2	58155	genome.wustl.edu	37	1	97217025	97217025	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021190.2	+1	reviewed	p.P28	0.988	240	0%	131	39.7%	-	-	-	-	-	NULL
DPYD	1806	genome.wustl.edu	37	1	98187097	98187097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000110.3	-1	reviewed	p.N151T	1.000	177	0%	71	39.4%	-	-	possibly_damaging(0.867)	tolerated(0.32)	neutral(0.361)	superfamily_Helical_ferredxn
LPPR4	9890	genome.wustl.edu	37	1	99764705	99764705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014839.4	+1	reviewed	p.L218R	1.000	408	0%	239	30.5%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
LPPR4	9890	genome.wustl.edu	37	1	99771601	99771601	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014839.4	+1	reviewed	p.R443*	0.931	100	0%	42	33.3%	-	-	-	-	-	NULL
PALMD	54873	genome.wustl.edu	37	1	100154935	100154935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017734.4	+1	validated	p.E373D	0.000	126	0%	55	29.1%	-	-	benign(0.032)	tolerated(0.52)	neutral(0.010)	NULL
FRRS1	391059	genome.wustl.edu	37	1	100174612	100174612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013660.2	-1	validated	p.Y575H	0.985	200	0%	126	36.5%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
FRRS1	391059	genome.wustl.edu	37	1	100207773	100207773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013660.2	-1	validated	p.W130C	1.000	381	0%	253	34.4%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Reeler
AGL	178	genome.wustl.edu	37	1	100336139	100336139	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000028.2	+1	reviewed	e5+2	1.000	207	0%	108	34.3%	-	-	-	-	-	-
SLC35A3	23443	genome.wustl.edu	37	1	100464939	100464939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012243.1	+1	provisional	p.A104T	1.000	179	0%	70	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nuc_sug_transp,superfamily_Multidrug resistance efflux transporter EmrE
SLC35A3	23443	genome.wustl.edu	37	1	100476951	100476951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012243.1	+1	provisional	p.E166K	1.000	237	0%	92	29.3%	-	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	HMMPfam_Nuc_sug_transp
SASS6	163786	genome.wustl.edu	37	1	100572946	100572946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194292.1	-1	validated	p.R437Q	0.291	144	0%	57	31.6%	-	-	probably_damaging(0.976)	tolerated(0.22)	neutral(0.460)	NULL
SASS6	163786	genome.wustl.edu	37	1	100575913	100575913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194292.1	-1	validated	p.E266K	0.997	643	0%	341	33.4%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
CCDC76	54482	genome.wustl.edu	37	1	100606482	100606482	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019083.2	+1	validated	p.G192	1.000	603	0.2%	282	36.2%	-	-	-	-	-	HMMPfam_TRM13
LRRC39	127495	genome.wustl.edu	37	1	100633977	100633977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144620.2	-1	provisional	p.E32D	0.999	592	0%	320	38.1%	-	-	probably_damaging(0.988)	tolerated(0.08)	deleterious(0.738)	NULL
RTCD1	8634	genome.wustl.edu	37	1	100741239	100741239	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130841.1	+1	validated	p.E247*	1.000	311	0%	148	41.2%	-	-	-	-	-	HMMPfam_RTC,superfamily_RNA 3'-terminal phosphate cyclase RPTC insert domain,HMMPfam_RTC_insert
CDC14A	8556	genome.wustl.edu	37	1	100856304	100856304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033312.2	+1	reviewed	p.R78I	1.000	315	0%	170	34.1%	-	-	benign(0.32)	tolerated(0.06)	neutral(0.422)	superfamily_(Phosphotyrosine protein) phosphatases II
GPR88	54112	genome.wustl.edu	37	1	101004693	101004693	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022049.2	+1	validated	p.S57	0.998	55	0%	45	33.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
EXTL2	2135	genome.wustl.edu	37	1	101343407	101343407	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033025.1	-1	validated	p.R20*	0.437	110	0%	66	24.2%	-	-	-	-	-	NULL
SLC30A7	148867	genome.wustl.edu	37	1	101431434	101431434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370111	+1	known	p.C67*	1.000	438	0%	221	29.4%	-	-	benign(0.15)	tolerated(0.45)	neutral(0.025)	HMMPfam_Cation_efflux
S1PR1	1901	genome.wustl.edu	37	1	101705208	101705208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001400.4	+1	reviewed	p.R223I	1.000	168	0%	136	34.6%	-	-	benign(0.21)	deleterious(0)	neutral(0.465)	HMMPfam_7tm_1,superfamily_SSF81321
S1PR1	1901	genome.wustl.edu	37	1	101705308	101705308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001400.4	+1	reviewed	p.K256N	1.000	92	0%	69	34.8%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_7tm_1,superfamily_SSF81321
S1PR1	1901	genome.wustl.edu	37	1	101705483	101705483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001400.4	+1	reviewed	p.N315D	1.000	74	0%	49	22.4%	-	-	possibly_damaging(0.575)	tolerated(0.16)	neutral(0.257)	superfamily_SSF81321
COL11A1	1301	genome.wustl.edu	37	1	103352370	103352370	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.F1629	1.000	475	0%	232	38.8%	-	-	-	-	-	HMMPfam_COLFI,HMMSmart_COLFI
COL11A1	1301	genome.wustl.edu	37	1	103352535	103352535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.Q1574H	0.997	568	0%	258	40.7%	-	-	unknown(0)	tolerated(0.09)	-	NULL
COL11A1	1301	genome.wustl.edu	37	1	103467504	103467504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.P719T	1.000	202	0%	64	23.4%	-	-	probably_damaging(0.98)	tolerated(0.12)	deleterious(0.684)	HMMPfam_Collagen
COL11A1	1301	genome.wustl.edu	37	1	103471829	103471829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.P588S	0.991	68	0%	21	42.9%	-	-	unknown(0)	tolerated(0.33)	-	HMMPfam_Collagen
COL11A1	1301	genome.wustl.edu	37	1	103544243	103544243	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.L153	0.981	279	0%	123	34.1%	-	-	-	-	-	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
RNPC3	55599	genome.wustl.edu	37	1	104083980	104083980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017619.3	+1	reviewed	p.K259T	1.000	382	0%	119	32.8%	-	-	benign(0.309)	deleterious(0.02)	deleterious(0.480)	NULL
AMY2B	280	genome.wustl.edu	37	1	104115858	104115858	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020978.3	+1	reviewed	p.I163	0.994	655	0%	335	29.9%	-	-	-	-	-	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
NTNG1	22854	genome.wustl.edu	37	1	107691418	107691418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113226.1	+1	validated	p.P68L	1.000	289	0%	158	32.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Laminin_N,HMMSmart_SM00136
VAV3	10451	genome.wustl.edu	37	1	108247217	108247217	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006113.4	-1	reviewed	p.E554*	1.000	328	0%	166	39.8%	-	-	-	-	-	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
VAV3	10451	genome.wustl.edu	37	1	108417609	108417609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006113.4	-1	reviewed	p.L79I	1.000	224	0%	107	13.1%	-	-	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
AKNAD1	254268	genome.wustl.edu	37	1	109380257	109380257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152763.3	-1	validated	p.K484T	0.005	466	0%	263	20.5%	-	-	possibly_damaging(0.713)	deleterious(0)	deleterious(0.702)	NULL
GPSM2	29899	genome.wustl.edu	37	1	109428193	109428193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013296.4	+1	validated	p.R17C	1.000	314	0.3%	167	37.7%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF48452
TMEM167B	56900	genome.wustl.edu	37	1	109637104	109637104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020141.3	+1	provisional	p.V70I	1.000	340	0%	215	25.6%	-	-	benign(0.001)	tolerated(0.87)	neutral(0.001)	NULL
SARS	6301	genome.wustl.edu	37	1	109766634	109766634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006513.2	+1	reviewed	p.K57N	1.000	561	0%	240	36.2%	-	-	probably_damaging(0.987)	tolerated(0.31)	neutral(0.464)	superfamily_tRNA-binding arm,HMMPfam_Seryl_tRNA_N
CELSR2	1952	genome.wustl.edu	37	1	109795546	109795546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.D949N	1.000	122	0%	81	39.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CYB561D1	284613	genome.wustl.edu	37	1	110037767	110037767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182580.2	+1	validated	p.L51I	1.000	788	0%	451	34.8%	-	-	benign(0.025)	deleterious(0.01)	neutral(0.407)	HMMPfam_Cytochrom_B561
AMIGO1	57463	genome.wustl.edu	37	1	110050860	110050860	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020703.2	-1	validated	p.C225	1.000	81	0%	51	27.5%	-	-	-	-	-	HMMSmart_LRRCT,superfamily_SSF52058
GNAT2	2780	genome.wustl.edu	37	1	110146103	110146103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005272.3	-1	reviewed	p.R313Q	1.000	447	0.2%	236	14.4%	-	-	possibly_damaging(0.85)	tolerated(0.39)	neutral(0.343)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
EPS8L3	79574	genome.wustl.edu	37	1	110300600	110300600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139053.1	-1	reviewed	p.K267N	1.000	685	0%	400	12.8%	-	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
CSF1	1435	genome.wustl.edu	37	1	110466038	110466038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000757.4	+1	validated	p.E265D	0.710	59	0%	39	64.1%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_CSF-1
AHCYL1	10768	genome.wustl.edu	37	1	110559066	110559066	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006621.4	+1	validated	p.E295*	1.000	307	0%	150	24.7%	-	-	-	-	-	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
SLC6A17	388662	genome.wustl.edu	37	1	110740828	110740828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010898.2	+1	validated	p.N649S	1.000	125	0%	115	33.9%	-	-	benign(0.006)	tolerated(0.24)	neutral(0.037)	HMMPfam_SNF
KCNC4	3749	genome.wustl.edu	37	1	110775555	110775555	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039574.1	+1	reviewed	p.S614	0.998	283	0%	124	39.5%	-	-	-	-	-	NULL
KCNA10	3744	genome.wustl.edu	37	1	111060656	111060656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005549.2	-1	reviewed	p.D252N	0.021	224	0%	186	39.8%	-	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	superfamily_SSF81324
KCNA2	3737	genome.wustl.edu	37	1	111147211	111147211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004974.2	-1	reviewed	p.R65Q	1.000	135	0%	80	26.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCNA3	3738	genome.wustl.edu	37	1	111216087	111216087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002232.3	-1	reviewed	p.D449N	1.000	133	0%	77	28.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNA3	3738	genome.wustl.edu	37	1	111216508	111216508	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002232.3	-1	reviewed	p.F308	0.982	71	0%	41	48.8%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CHI3L2	1117	genome.wustl.edu	37	1	111784925	111784925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004000.2	+1	validated	p.S371F	0.906	137	0%	86	34.9%	-	-	benign(0.002)	tolerated(1)	-	superfamily_Glyco_hydro_cat
C1orf88	128344	genome.wustl.edu	37	1	111890325	111890325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181643.4	+1	validated	p.K63N	0.456	201	0%	109	41.3%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
KCND3	3752	genome.wustl.edu	37	1	112524657	112524657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004980.3	-1	reviewed	p.T231M	1.000	38	0%	33	27.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CTTNBP2NL	55917	genome.wustl.edu	37	1	112999550	112999550	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018704.2	+1	validated	p.L479R	0.675	289	0%	153	34%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_CortBP2
WNT2B	7482	genome.wustl.edu	37	1	113063059	113063059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024494.2	+1	reviewed	p.K368N	1.000	332	0%	192	38.5%	-	-	benign(0.111)	tolerated(0.25)	neutral(0.045)	HMMPfam_wnt,HMMSmart_SM00097
ST7L	54879	genome.wustl.edu	37	1	113098637	113098637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017744.4	-1	reviewed	p.L417V	1.000	143	0%	100	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ST7
ST7L	54879	genome.wustl.edu	37	1	113124719	113124719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017744.4	-1	reviewed	p.E322*	1.000	270	0%	161	32.3%	-	-	-	-	-	HMMPfam_ST7
PPM1J	333926	genome.wustl.edu	37	1	113253099	113253099	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005167.5	-1	reviewed	p.E451	1.000	281	0%	210	36.2%	-	-	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
LOC128322	128322	genome.wustl.edu	37	1	113290807	113290807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_060943.1	+1	model	p.A31T	0.895	86	0%	47	38.3%	-	-	-	-	-	HMMPfam_NTF2,PatternScan_WD_REPEATS_1,superfamily_NTF2-like
SLC16A1	6566	genome.wustl.edu	37	1	113459960	113459960	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003051.3	-1	reviewed	p.F356	0.999	117	0%	48	47.9%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
LRIG2	9860	genome.wustl.edu	37	1	113653158	113653158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014813.1	+1	provisional	p.S591Y	1.000	213	0%	165	35.8%	-	-	benign(0.159)	deleterious(0)	neutral(0.459)	HMMSmart_IG,superfamily_SSF48726
MAGI3	260425	genome.wustl.edu	37	1	114193706	114193706	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142782.1	+1	validated	p.L773R	1.000	300	0%	196	35.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
RSBN1	54665	genome.wustl.edu	37	1	114340562	114340562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018364.3	-1	validated	p.R267Q	1.000	289	0%	206	41.7%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
PTPN22	26191	genome.wustl.edu	37	1	114380565	114380565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015967.4	-1	reviewed	p.A486V	0.988	202	0%	117	40.2%	-	-	benign(0.094)	tolerated(0.83)	neutral(0.007)	NULL
AP4B1	10717	genome.wustl.edu	37	1	114443859	114443859	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006594.2	-1	validated	p.R206*	1.000	134	0%	58	25.9%	-	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
HIPK1	204851	genome.wustl.edu	37	1	114511225	114511225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198268.1	+1	reviewed	p.R909Q	1.000	257	0.4%	155	36.1%	-	-	probably_damaging(0.965)	tolerated(0.07)	deleterious(0.726)	NULL
TRIM33	51592	genome.wustl.edu	37	1	114944012	114944012	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448034	-1	known	p.R750*	1.000	212	0%	82	15.9%	-	-	benign(0.032)	tolerated(0.21)	neutral(0.045)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
BCAS2	10286	genome.wustl.edu	37	1	115113346	115113346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005872.2	-1	validated	p.A149T	1.000	136	0%	65	32.3%	-	-	benign(0.296)	tolerated(0.25)	neutral(0.129)	HMMPfam_BCAS2
DENND2C	163259	genome.wustl.edu	37	1	115142905	115142905	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198459.3	-1	validated	p.C618*	1.000	216	0%	100	32%	-	-	-	-	-	HMMPfam_DENN,HMMSmart_DENN
AMPD1	270	genome.wustl.edu	37	1	115220998	115220998	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000036.2	-1	reviewed	p.M350L	0.998	421	0%	190	15.3%	-	-	benign(0)	tolerated(1)	-	HMMPfam_A_deaminase,superfamily_SSF51556
NRAS	4893	genome.wustl.edu	37	1	115252323	115252323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002524.3	-1	reviewed	p.S106L	1.000	476	0.2%	233	38.2%	-	-	benign(0.013)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSDE1	7812	genome.wustl.edu	37	1	115267909	115267909	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130523.1	-1	validated	p.V577	0.983	712	0%	393	24.4%	-	-	-	-	-	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins
CSDE1	7812	genome.wustl.edu	37	1	115277125	115277125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130523.1	-1	validated	p.R189C	1.000	192	0%	103	41.7%	-	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
SYCP1	6847	genome.wustl.edu	37	1	115428789	115428789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003176.2	+1	validated	p.K350T	0.934	199	0%	108	41.7%	-	-	possibly_damaging(0.631)	deleterious(0.03)	deleterious(0.585)	HMMPfam_SCP-1
SYCP1	6847	genome.wustl.edu	37	1	115489881	115489881	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003176.2	+1	validated	p.S754	0.905	206	0%	74	25.7%	-	-	-	-	-	HMMPfam_SCP-1
TSPAN2	10100	genome.wustl.edu	37	1	115604774	115604774	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005725.4	-1	reviewed	p.S84	0.321	248	0%	118	31.4%	-	-	-	-	-	HMMPfam_Tetraspannin,PatternScan_TM4_1
NGF	4803	genome.wustl.edu	37	1	115829407	115829407	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002506.2	-1	reviewed	p.L4	1.000	139	0%	58	31%	-	-	-	-	-	NULL
CASQ2	845	genome.wustl.edu	37	1	116311118	116311118	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001232.3	-1	reviewed	p.S15	0.986	241	0%	110	17.3%	-	-	-	-	-	HMMPfam_Calsequestrin
NHLH2	4808	genome.wustl.edu	37	1	116380721	116380721	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111061.1	-1	validated	p.E91D	0.980	47	0%	32	28.1%	-	-	benign(0.395)	deleterious(0)	deleterious(0.572)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
SLC22A15	55356	genome.wustl.edu	37	1	116569533	116569533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018420.2	+1	validated	p.F206L	1.000	433	0%	229	36.2%	-	-	benign(0.006)	tolerated(0.39)	neutral(0.016)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC22A15	55356	genome.wustl.edu	37	1	116609274	116609274	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018420.2	+1	validated	p.S500*	0.970	200	0%	118	33.9%	-	-	-	-	-	NULL
ATP1A1	476	genome.wustl.edu	37	1	116926642	116926642	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000701.7	+1	reviewed	p.R7fs	1.000	-	-	-	-	-	-	-	-	-	NULL
CD2	914	genome.wustl.edu	37	1	117297285	117297285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001767.3	+1	validated	p.E32K	0.001	250	0%	146	37%	-	-	benign(0.068)	tolerated(0.06)	neutral(0.327)	HMMPfam_V-set,superfamily_Immunoglobulin
PTGFRN	5738	genome.wustl.edu	37	1	117509713	117509713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020440.2	+1	provisional	p.S607F	1.000	261	0%	154	36.4%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00409,superfamily_Immunoglobulin
PTGFRN	5738	genome.wustl.edu	37	1	117516885	117516885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020440.2	+1	provisional	p.R703W	1.000	401	0%	254	31.9%	-	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMSmart_SM00409,superfamily_Immunoglobulin
TTF2	8458	genome.wustl.edu	37	1	117618328	117618328	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003594.3	+1	reviewed	p.S374	0.000	132	0%	113	31.9%	-	-	-	-	-	NULL
WDR3	10885	genome.wustl.edu	37	1	118502037	118502037	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006784.2	+1	reviewed	p.K933N	1.000	434	0%	214	37.4%	-	-	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	HMMPfam_Utp12
SPAG17	200162	genome.wustl.edu	37	1	118548166	118548166	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206996.2	-1	validated	p.C1549*	0.987	193	0%	117	12.8%	-	-	-	-	-	NULL
HSD3B1	3283	genome.wustl.edu	37	1	120056716	120056716	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000862.2	+1	validated	p.I190	1.000	139	0%	82	29.3%	-	-	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
ZNF697	90874	genome.wustl.edu	37	1	120168576	120168576	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080470.1	-1	provisional	p.E50*	0.001	416	0%	271	31%	-	-	-	-	-	NULL
PHGDH	26227	genome.wustl.edu	37	1	120284439	120284439	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006623.3	+1	reviewed	p.V376	0.957	86	0%	64	50%	-	-	-	-	-	NULL
HMGCS2	3158	genome.wustl.edu	37	1	120295926	120295926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005518.3	-1	reviewed	p.R424Q	0.657	114	0%	51	23.5%	-	-	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like
HMGCS2	3158	genome.wustl.edu	37	1	120298145	120298145	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005518.3	-1	reviewed	p.F364	1.000	688	0%	336	31.8%	-	-	-	-	-	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like
HMGCS2	3158	genome.wustl.edu	37	1	120306969	120306969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005518.3	-1	reviewed	p.V129I	1.000	159	0%	153	35.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like
HMGCS2	3158	genome.wustl.edu	37	1	120307093	120307093	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005518.3	-1	reviewed	p.G87	1.000	306	0%	243	29.6%	-	-	-	-	-	HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like
REG4	83998	genome.wustl.edu	37	1	120345580	120345580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369401	-1	known	p.E92D	0.036	202	0%	96	36.5%	-	-	benign(0.099)	-	-	NULL
ADAM30	11085	genome.wustl.edu	37	1	120436697	120436697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021794.2	-1	reviewed	p.A755T	0.000	1018	0%	590	34.4%	-	-	benign(0.186)	deleterious(0)	neutral(0.462)	NULL
NOTCH2	4853	genome.wustl.edu	37	1	120464369	120464369	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024408.2	-1	reviewed	p.V1759	0.270	381	0%	251	36.7%	-	-	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144880778	144880778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.E1284K	1.000	407	0.2%	234	18.8%	-	-	unknown(0)	deleterious(0.01)	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144886282	144886282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.Q984H	0.786	324	0%	176	19.9%	-	-	unknown(0)	deleterious(0)	-	NULL
HFE2	148738	genome.wustl.edu	37	1	145416650	145416650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213653.3	+1	reviewed	p.R332H	0.974	190	0.5%	128	10.2%	-	-	probably_damaging(0.974)	tolerated(0.57)	neutral(0.422)	HMMPfam_RGM_C
PEX11B	8799	genome.wustl.edu	37	1	145517352	145517352	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003846.2	+1	validated	p.R46*	0.578	176	0%	95	43.2%	-	-	-	-	-	HMMPfam_PEX11
ITGA10	8515	genome.wustl.edu	37	1	145533486	145533486	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003637.3	+1	reviewed	p.R457*	1.000	397	0%	260	35%	-	-	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
RNF115	27246	genome.wustl.edu	37	1	145663195	145663195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014455.2	+1	validated	p.D86Y	1.000	346	0%	143	33.6%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
RNF115	27246	genome.wustl.edu	37	1	145684635	145684635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014455.2	+1	validated	p.K208N	1.000	379	0%	145	31%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_RING/U-box
ACP6	51205	genome.wustl.edu	37	1	147119318	147119318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016361.3	-1	validated	p.F398L	1.000	377	0%	249	34.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Phosphoglycerate mutase-like
GJA5	2702	genome.wustl.edu	37	1	147230322	147230322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005266.5	-1	reviewed	p.R342Q	0.995	307	0%	164	35.4%	-	-	unknown(0)	deleterious(0)	-	NULL
GJA5	2702	genome.wustl.edu	37	1	147230816	147230816	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005266.5	-1	reviewed	p.I177	1.000	119	0%	77	15.6%	-	-	-	-	-	HMMPfam_Connexin_CCC
GJA5	2702	genome.wustl.edu	37	1	147231305	147231305	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005266.5	-1	reviewed	p.V14	0.141	165	0%	114	14.9%	-	-	-	-	-	HMMPfam_Connexin
NBPF14	25832	genome.wustl.edu	37	1	148025846	148025846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310701	-1	known	p.K1N	0.002	287	0%	165	26.1%	-	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
SV2A	9900	genome.wustl.edu	37	1	149884905	149884905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014849.3	-1	validated	p.R163H	1.000	115	0%	80	33.8%	-	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	superfamily_MFS general substrate transporter
OTUD7B	56957	genome.wustl.edu	37	1	149916650	149916650	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020205.2	-1	validated	p.E546	1.000	235	0%	203	38.4%	-	-	-	-	-	NULL
PLEKHO1	51177	genome.wustl.edu	37	1	150131099	150131099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016274.4	+1	provisional	p.A204V	1.000	106	0%	54	27.8%	-	-	possibly_damaging(0.923)	tolerated(0.27)	neutral(0.406)	NULL
ENSG00000245214	0	genome.wustl.edu	37	1	150131811	150131811	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430673	-1	novel	NULL	0.772	14	0%	10	50%	-	-	-	-	-	-
PRPF3	9129	genome.wustl.edu	37	1	150316732	150316732	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004698.2	+1	reviewed	p.R507	1.000	200	0%	97	41.2%	-	-	-	-	-	HMMPfam_PRP3
TARS2	80222	genome.wustl.edu	37	1	150463122	150463122	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025150.3	+1	provisional	p.Q145E	0.955	319	0%	112	29.5%	-	-	benign(0.026)	tolerated(0.98)	neutral(0.001)	superfamily_Thr/Ala-tRNA-synth_IIc_edit
HORMAD1	84072	genome.wustl.edu	37	1	150680867	150680867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032132.3	-1	provisional	p.E138K	0.000	323	0%	111	40.5%	-	-	benign(0)	tolerated(0.82)	neutral(0.001)	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
SETDB1	9869	genome.wustl.edu	37	1	150936128	150936128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145415.1	+1	reviewed	p.R1194C	0.991	67	0%	53	34%	-	-	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MLLT11	10962	genome.wustl.edu	37	1	151039956	151039956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006818.3	+1	reviewed	p.E86K	1.000	57	0%	58	36.2%	-	-	benign(0.153)	deleterious(0.04)	neutral(0.362)	NULL
GABPB2	126626	genome.wustl.edu	37	1	151089947	151089947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144618.2	+1	validated	p.K334N	1.000	327	0%	136	33.1%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
PIP5K1A	8394	genome.wustl.edu	37	1	151212450	151212450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135638.1	+1	validated	p.R433H	1.000	131	0%	82	30.5%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
ZNF687	57592	genome.wustl.edu	37	1	151260445	151260445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020832.1	+1	provisional	p.E560K	1.000	34	0%	22	22.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2H2 and C2HC zinc fingers
SELENBP1	8991	genome.wustl.edu	37	1	151341588	151341588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455839	-1	known	p.R47W	0.994	49	0%	34	41.2%	-	-	unknown(0)	-	-	NULL
POGZ	23126	genome.wustl.edu	37	1	151379718	151379718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.S809P	1.000	217	0%	117	30.8%	-	-	benign(0.002)	tolerated(0.26)	neutral(0.034)	NULL
POGZ	23126	genome.wustl.edu	37	1	151384859	151384859	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.I564	1.000	183	0%	71	31%	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POGZ	23126	genome.wustl.edu	37	1	151396750	151396750	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.E400*	1.000	408	0%	231	36.8%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
SNX27	81609	genome.wustl.edu	37	1	151641067	151641067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030918.5	+1	reviewed	p.L369I	1.000	228	0%	159	37.7%	-	-	possibly_damaging(0.739)	tolerated(0.2)	neutral(0.320)	NULL
MRPL9	65005	genome.wustl.edu	37	1	151734876	151734876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031420.2	-1	reviewed	p.K137N	0.913	342	0%	203	38.4%	-	-	possibly_damaging(0.811)	tolerated(0.14)	deleterious(0.555)	superfamily_L9 N-domain-like,HMMPfam_Ribosomal_L9_N
OAZ3	51686	genome.wustl.edu	37	1	151740600	151740600	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453029	+1	known	p.S48*	1.000	334	0%	284	35.2%	-	-	probably_damaging(0.99)	tolerated(0.2)	deleterious(0.490)	HMMPfam_ODC_AZ
TDRKH	11022	genome.wustl.edu	37	1	151749034	151749034	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083963.1	-1	validated	p.E309*	1.000	197	0%	113	40.7%	-	-	-	-	-	HMMPfam_TUDOR
TDRKH	11022	genome.wustl.edu	37	1	151751443	151751443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083963.1	-1	validated	p.R201W	1.000	319	0%	165	29.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
TCHHL1	126637	genome.wustl.edu	37	1	152060497	152060497	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008536.1	-1	provisional	p.F41L	0.944	211	0%	133	39.1%	-	-	benign(0.02)	tolerated(0.3)	neutral(0.030)	HMMPfam_S_100,superfamily_SSF47473
HRNR	388697	genome.wustl.edu	37	1	152186537	152186537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.S2523Y	0.006	462	0%	352	11.6%	-	-	unknown(0)	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152283701	152283701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.R1221C	0.000	848	0%	579	34.2%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
FLG	2312	genome.wustl.edu	37	1	152285758	152285758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.S535L	0.000	694	0%	500	35.2%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
FLG	2312	genome.wustl.edu	37	1	152287909	152287909	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.I8	0.271	433	0%	230	10%	-	-	-	-	-	HMMPfam_S_100,superfamily_SSF47473
FLG2	388698	genome.wustl.edu	37	1	152326237	152326237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014342.2	-1	provisional	p.R1342I	0.010	928	0%	535	38.1%	-	-	unknown(0)	deleterious(0)	-	NULL
CRNN	49860	genome.wustl.edu	37	1	152383145	152383145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016190.2	-1	reviewed	p.R138I	0.002	255	0%	135	27.4%	-	-	benign(0.055)	tolerated(0.09)	neutral(0.300)	NULL
LCE1A	353131	genome.wustl.edu	37	1	152800215	152800215	+	Silent	SNP	C	C	T	rs112149679		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178348.1	+1	validated	p.S89	0.996	91	0%	92	34.8%	-	-	-	-	-	NULL
SPRR3	6707	genome.wustl.edu	37	1	152975686	152975686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097589.1	+1	validated	p.P64S	0.082	219	0%	127	33.1%	-	-	benign(0.004)	tolerated(0.07)	neutral(0.319)	HMMPfam_Cornifin
SPRR3	6707	genome.wustl.edu	37	1	152975710	152975710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097589.1	+1	validated	p.P72S	0.805	224	0%	137	16.1%	-	-	benign(0.004)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cornifin
SPRR2G	6706	genome.wustl.edu	37	1	153122608	153122608	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014291.3	-1	validated	e1-1	0.579	161	0%	85	15.3%	-	-	-	-	-	-
S100A12	6283	genome.wustl.edu	37	1	153346365	153346365	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005621.1	-1	reviewed	p.E73*	0.083	398	0%	211	35.1%	-	-	-	-	-	PatternScan_S100_CABP,HMMPfam_efhand,superfamily_SSF47473
S100A13	6284	genome.wustl.edu	37	1	153598840	153598840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024210.1	-1	reviewed	p.E37K	0.950	186	0%	142	38%	-	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMPfam_S_100,superfamily_SSF47473
NPR1	4881	genome.wustl.edu	37	1	153653680	153653680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000906.3	+1	validated	p.D316Y	1.000	206	0%	105	41%	-	-	benign(0.022)	deleterious(0.01)	neutral(0.407)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
INTS3	65123	genome.wustl.edu	37	1	153713790	153713790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023015.3	+1	validated	p.E88D	0.979	255	0%	176	39.2%	-	-	benign(0.081)	tolerated(0.24)	neutral(0.043)	NULL
SLC27A3	11000	genome.wustl.edu	37	1	153750265	153750265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024330.1	+1	provisional	p.F402L	1.000	164	0%	77	41.6%	-	-	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DENND4B	9909	genome.wustl.edu	37	1	153910068	153910068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.R710W	0.462	126	0%	94	30.9%	-	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
DENND4B	9909	genome.wustl.edu	37	1	153916543	153916543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.V103A	1.000	81	0%	54	40.7%	-	-	possibly_damaging(0.888)	deleterious(0.02)	deleterious(0.730)	NULL
SLC39A1	27173	genome.wustl.edu	37	1	153933212	153933212	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014437.3	-1	provisional	p.E113*	1.000	83	0%	46	13%	-	-	-	-	-	HMMPfam_Zip
JTB	10899	genome.wustl.edu	37	1	153947269	153947269	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006694.3	-1	validated	p.F109	0.184	162	0%	83	36.1%	-	-	-	-	-	HMMPfam_JTB
NUP210L	91181	genome.wustl.edu	37	1	154110676	154110676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207308.2	-1	validated	p.E252D	1.000	176	0%	113	40.7%	-	-	possibly_damaging(0.942)	tolerated(0.45)	neutral(0.399)	NULL
NUP210L	91181	genome.wustl.edu	37	1	154112300	154112300	+	Missense_Mutation	SNP	C	C	T	rs182423356	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207308.2	-1	validated	p.R232Q	1.000	477	0%	235	31.1%	-	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
C1orf189	388701	genome.wustl.edu	37	1	154173034	154173034	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010979.1	-1	predicted	p.W35*	1.000	311	0%	210	35.2%	-	-	-	-	-	NULL
UBAP2L	9898	genome.wustl.edu	37	1	154229711	154229711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014847.3	+1	validated	p.R777Q	1.000	352	0.3%	253	35.6%	-	-	unknown(0)	tolerated(0.05)	-	NULL
HAX1	10456	genome.wustl.edu	37	1	154247935	154247935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006118.3	+1	reviewed	p.E244K	0.050	393	0.3%	179	27.9%	-	-	probably_damaging(0.982)	tolerated(0.09)	deleterious(0.723)	NULL
ATP8B2	57198	genome.wustl.edu	37	1	154306703	154306703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020452.3	+1	reviewed	p.R270Q	1.000	213	0%	133	29.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
IL6R	3570	genome.wustl.edu	37	1	154422420	154422420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000565.2	+1	reviewed	p.L344I	0.000	275	0%	141	22%	-	-	benign(0.005)	tolerated(0.46)	neutral(0.012)	NULL
TDRD10	126668	genome.wustl.edu	37	1	154514508	154514508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098475.1	+1	validated	p.E126D	0.000	227	0%	139	30.2%	-	-	benign(0.04)	-	-	NULL
CHRNB2	1141	genome.wustl.edu	37	1	154542794	154542794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000748.2	+1	reviewed	p.R106W	1.000	171	0%	105	35.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
PYGO2	90780	genome.wustl.edu	37	1	154931522	154931522	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138300.3	-1	validated	p.S318	0.948	31	0%	27	25.9%	-	-	-	-	-	NULL
DCST2	127579	genome.wustl.edu	37	1	154996342	154996342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144622.2	-1	validated	p.E612D	0.865	36	0%	32	34.4%	-	-	benign(0.009)	tolerated(0.51)	neutral(0.009)	NULL
DCST1	149095	genome.wustl.edu	37	1	155007015	155007015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152494.2	+1	validated	p.A56T	0.305	125	0%	125	39.2%	-	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
DCST1	149095	genome.wustl.edu	37	1	155019779	155019779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152494.2	+1	validated	p.N535H	0.647	205	0%	97	35.1%	-	-	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	HMMPfam_DC_STAMP
ASH1L	55870	genome.wustl.edu	37	1	155317506	155317506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.R2582C	1.000	399	0%	277	18.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
ASH1L	55870	genome.wustl.edu	37	1	155330181	155330181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.R2236W	1.000	226	0%	124	36.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ASH1L	55870	genome.wustl.edu	37	1	155330189	155330189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.G2233E	1.000	208	0%	120	20.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ASH1L	55870	genome.wustl.edu	37	1	155448699	155448699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.R1321Q	1.000	293	0%	135	40%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155449470	155449470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.S1064Y	0.999	83	0%	54	35.2%	-	-	benign(0.012)	deleterious(0)	neutral(0.445)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155491082	155491082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.E77*	1.000	467	0.4%	241	36.5%	-	-	-	-	-	NULL
RIT1	6016	genome.wustl.edu	37	1	155880270	155880270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006912.4	-1	validated	p.R45Q	0.997	526	0%	227	39.6%	-	-	possibly_damaging(0.488)	tolerated(0.34)	neutral(0.185)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAB25	57111	genome.wustl.edu	37	1	156035737	156035737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020387.2	+1	provisional	p.N27D	1.000	90	0%	79	38%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
RAB25	57111	genome.wustl.edu	37	1	156039961	156039961	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020387.2	+1	provisional	p.A175	0.004	113	0%	91	34.1%	-	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
SEMA4A	64218	genome.wustl.edu	37	1	156144705	156144705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022367.2	+1	provisional	p.R470C	0.094	152	0%	107	36.4%	-	-	possibly_damaging(0.441)	deleterious(0.01)	deleterious(0.549)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SMG5	23381	genome.wustl.edu	37	1	156235964	156235964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015327.2	-1	validated	p.R488Q	0.715	127	0.8%	78	20.5%	-	-	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
C1orf85	112770	genome.wustl.edu	37	1	156264301	156264301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144580.1	-1	provisional	p.R145I	0.050	203	0%	130	39.2%	-	-	possibly_damaging(0.912)	tolerated(0.13)	deleterious(0.616)	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156504323	156504323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178229.4	-1	validated	p.D1237G	0.411	166	0%	102	37.3%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMSmart_RasGAP,superfamily_Rho_GAP
GPATCH4	54865	genome.wustl.edu	37	1	156565237	156565237	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015590.2	-1	validated	p.K299T	0.206	843	0%	536	17.7%	-	-	benign(0.074)	tolerated(0.06)	neutral(0.328)	NULL
BCAN	63827	genome.wustl.edu	37	1	156616618	156616618	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021948.3	+1	validated	p.I39	0.515	10	0.000	9	0.889	-	-	-	-	-	HMMPfam_V-set
ISG20L2	81875	genome.wustl.edu	37	1	156696945	156696945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030980.1	-1	provisional	p.K167T	0.010	240	0%	139	39.6%	-	-	possibly_damaging(0.922)	tolerated(0.44)	neutral(0.384)	superfamily_RNaseH_fold
RRNAD1	51093	genome.wustl.edu	37	1	156702825	156702825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015997.3	+1	validated	p.V160M	0.998	248	0%	163	36.8%	-	-	possibly_damaging(0.923)	deleterious(0.03)	deleterious(0.737)	superfamily_SSF53335
NTRK1	4914	genome.wustl.edu	37	1	156811908	156811908	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007792.1	+1	reviewed	p.P15	0.805	341	0%	210	32.4%	-	-	-	-	-	NULL
INSRR	3645	genome.wustl.edu	37	1	156819069	156819069	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014215.1	-1	validated	p.I471	1.000	228	0%	160	36.9%	-	-	-	-	-	superfamily_SSF52058
LRRC71	149499	genome.wustl.edu	37	1	156894802	156894802	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144702.2	+1	validated	p.T196	0.978	114	0%	73	26%	-	-	-	-	-	superfamily_RNI-like
LRRC71	149499	genome.wustl.edu	37	1	156899209	156899209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144702.2	+1	validated	p.K378N	1.000	388	0%	150	30.7%	-	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	superfamily_RNI-like
LRRC71	149499	genome.wustl.edu	37	1	156902674	156902674	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144702.2	+1	validated	p.A531	0.003	163	0%	97	46.4%	-	-	-	-	-	superfamily_RNI-like
ARHGEF11	9826	genome.wustl.edu	37	1	156909691	156909691	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198236.1	-1	reviewed	p.R1249*	1.000	97	0%	60	33.3%	-	-	-	-	-	NULL
FCRL4	83417	genome.wustl.edu	37	1	157545322	157545322	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031282.2	-1	reviewed	p.E514*	0.005	448	0%	251	29.9%	-	-	-	-	-	NULL
FCRL1	115350	genome.wustl.edu	37	1	157772290	157772290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052938.4	-1	reviewed	p.R162C	0.461	141	0%	97	41.2%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CD1C	911	genome.wustl.edu	37	1	158262602	158262602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001765.2	+1	reviewed	p.A276V	0.005	288	0%	163	35%	-	-	possibly_damaging(0.947)	deleterious(0.04)	deleterious(0.740)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
CD1C	911	genome.wustl.edu	37	1	158263348	158263348	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443761	+1	known	p.D266N	0.000	177	0%	86	38.4%	-	-	-	-	-	NULL
CD1B	910	genome.wustl.edu	37	1	158299170	158299170	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001764.2	-1	reviewed	p.I292	0.062	236	0%	179	32.4%	-	-	-	-	-	HMMPfam_C1-set,superfamily_Immunoglobulin
OR6P1	128366	genome.wustl.edu	37	1	158532573	158532573	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334632	-1	known	p.I274	0.000	360	0.6%	178	33.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10X1	128367	genome.wustl.edu	37	1	158549268	158549268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004477.1	-1	provisional	p.A141V	1.000	138	0%	61	44.3%	-	-	benign(0.005)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158607931	158607931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.R1694H	1.000	287	0%	195	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158636153	158636153	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.R725*	0.947	97	0%	66	40.9%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158647500	158647500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.L313F	1.000	240	0%	128	17.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K3	391114	genome.wustl.edu	37	1	158687037	158687037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005327.2	-1	validated	p.S306N	0.031	272	0%	124	35.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
OR6K3	391114	genome.wustl.edu	37	1	158687693	158687693	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005327.2	-1	validated	p.I87	0.013	282	0%	93	26.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6N1	128372	genome.wustl.edu	37	1	158736155	158736155	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005185.1	-1	provisional	p.S106	0.025	203	0%	92	30.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MNDA	4332	genome.wustl.edu	37	1	158819027	158819027	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002432.1	+1	reviewed	p.*408W	0.002	339	0%	159	35.8%	-	-	-	-	-	NULL
PYHIN1	149628	genome.wustl.edu	37	1	158909238	158909238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368135	+1	known	p.L209M	0.001	43	0%	22	31.8%	-	-	probably_damaging(0.977)	tolerated(0.23)	neutral(0.460)	NULL
IFI16	3428	genome.wustl.edu	37	1	158988186	158988186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005531.2	+1	reviewed	p.F239L	0.072	274	0%	151	33.8%	-	-	benign(0.151)	deleterious(0.01)	neutral(0.419)	HMMPfam_HIN
IFI16	3428	genome.wustl.edu	37	1	159021594	159021594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005531.2	+1	reviewed	p.K541N	0.000	201	0%	104	38.5%	-	-	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMPfam_HIN
DARC	2532	genome.wustl.edu	37	1	159176213	159176213	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122951.1	+1	reviewed	p.H330	0.064	259	0%	170	40%	-	-	-	-	-	NULL
OR10J3	441911	genome.wustl.edu	37	1	159249386	159249386	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389011	-1	known	p.I293	1.000	67	0%	29	27.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10J3	441911	genome.wustl.edu	37	1	159283916	159283916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004467.1	-1	provisional	p.F178L	0.992	200	0%	96	46.9%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_7tm_1,superfamily_SSF81321
OR10J1	26476	genome.wustl.edu	37	1	159336078	159336078	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000328408	+1	known	p.V43G	0.000	23	0%	12	41.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10J5	127385	genome.wustl.edu	37	1	159505724	159505724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004469.1	-1	provisional	p.I25K	0.007	102	0%	44	27.3%	-	-	possibly_damaging(0.455)	tolerated(0.32)	neutral(0.173)	superfamily_Family A G protein-coupled receptor-like
OR10J5	127385	genome.wustl.edu	37	1	159505786	159505786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004469.1	-1	provisional	p.K4N	1.000	61	0%	24	37.5%	-	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	superfamily_Family A G protein-coupled receptor-like
CCDC19	25790	genome.wustl.edu	37	1	159846422	159846422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012337.2	-1	validated	p.E426K	1.000	347	0.3%	261	37.2%	-	-	benign(0.063)	tolerated(0.18)	neutral(0.060)	NULL
IGSF9	57549	genome.wustl.edu	37	1	159899439	159899439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.R772H	0.962	28	0%	20	20%	-	-	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	NULL
ATP1A2	477	genome.wustl.edu	37	1	160093040	160093040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000702.3	+1	reviewed	p.R72Q	1.000	146	0%	122	14.8%	-	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	HMMPfam_Cation_ATPase_N,superfamily_SSF81665
ATP1A2	477	genome.wustl.edu	37	1	160100291	160100291	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447527	+1	known	p.R288Q	0.008	181	0%	90	42.2%	-	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP1A4	480	genome.wustl.edu	37	1	160129294	160129294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.F252L	1.000	221	0%	133	21.8%	-	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ATP1A4	480	genome.wustl.edu	37	1	160146276	160146276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.A825V	1.000	149	0%	90	38.9%	-	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
CASQ1	844	genome.wustl.edu	37	1	160171103	160171103	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001231.4	+1	reviewed	p.W370*	1.000	483	0%	253	35.6%	-	-	-	-	-	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd,PatternScan_CALSEQUESTRIN_2
DCAF8	50717	genome.wustl.edu	37	1	160195426	160195426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015726.3	-1	reviewed	p.E366D	1.000	347	0%	217	35.5%	-	-	benign(0.027)	tolerated(0.34)	neutral(0.025)	superfamily_WD40 repeat-like
PEX19	5824	genome.wustl.edu	37	1	160252819	160252819	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002857.3	-1	reviewed	p.F87	0.550	251	0%	146	31.5%	-	-	-	-	-	HMMPfam_Pex19
SLAMF1	6504	genome.wustl.edu	37	1	160607287	160607287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003037.2	-1	validated	p.R37W	0.000	189	0%	95	37.9%	-	-	possibly_damaging(0.461)	deleterious(0.03)	deleterious(0.515)	HMMPfam_SLAM
LY9	4063	genome.wustl.edu	37	1	160765992	160765992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002348.2	+1	validated	p.K5N	0.002	253	0%	172	31.4%	-	-	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	NULL
LY9	4063	genome.wustl.edu	37	1	160769831	160769831	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002348.2	+1	validated	p.F138C	0.002	143	0%	66	13.6%	-	-	benign(0.296)	tolerated(0.21)	neutral(0.136)	HMMSmart_SM00409,superfamily_Immunoglobulin
LY9	4063	genome.wustl.edu	37	1	160783468	160783468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002348.2	+1	validated	p.V166A	0.000	177	0%	92	26.1%	-	-	possibly_damaging(0.452)	tolerated(0.68)	neutral(0.150)	superfamily_Immunoglobulin
UFC1	51506	genome.wustl.edu	37	1	161123797	161123797	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016406.3	+1	validated	p.E4*	1.000	205	0%	148	33.1%	-	-	-	-	-	HMMPfam_UFC1
B4GALT3	8703	genome.wustl.edu	37	1	161143496	161143496	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003779.2	-1	reviewed	p.F234	0.996	333	0%	207	40.1%	-	-	-	-	-	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
ENSG00000237394	0	genome.wustl.edu	37	1	161192228	161192228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443363	+1	known	p.E55K	0.000	289	0%	191	39.3%	-	-	-	-	-	NULL
HSPA6	3310	genome.wustl.edu	37	1	161495834	161495834	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002155.3	+1	validated	p.E462	0.994	303	0%	189	34.4%	-	-	-	-	-	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
ATF6	22926	genome.wustl.edu	37	1	161928390	161928390	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.P653	0.529	149	0%	134	34.3%	-	-	-	-	-	NULL
OLFML2B	25903	genome.wustl.edu	37	1	161967636	161967636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015441.1	-1	provisional	p.D485Y	1.000	196	0%	127	41.7%	-	-	probably_damaging(0.956)	tolerated(0.05)	deleterious(0.745)	NULL
OLFML2B	25903	genome.wustl.edu	37	1	161969922	161969922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015441.1	-1	provisional	p.E310D	0.996	131	0%	76	36.8%	-	-	benign(0.021)	tolerated(0.42)	neutral(0.015)	NULL
C1orf111	284680	genome.wustl.edu	37	1	162346511	162346511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182581.3	-1	validated	p.D24N	0.063	245	0%	111	25.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UHMK1	127933	genome.wustl.edu	37	1	162470858	162470858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175866.4	+1	reviewed	p.M239I	1.000	238	0%	100	36%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UHMK1	127933	genome.wustl.edu	37	1	162492196	162492196	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175866.4	+1	reviewed	p.V372	1.000	531	0%	283	33.6%	-	-	unknown(0)	tolerated(1)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RGS5	8490	genome.wustl.edu	37	1	163131717	163131717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003617.3	-1	validated	p.L69M	1.000	225	0%	99	27.3%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS5	8490	genome.wustl.edu	37	1	163138127	163138127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003617.3	-1	validated	p.L26I	1.000	214	0%	116	48.3%	-	-	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	NULL
PBX1	5087	genome.wustl.edu	37	1	164768945	164768945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002585.2	+1	validated	p.E174K	1.000	70	0%	78	17.9%	-	-	possibly_damaging(0.929)	tolerated(0.11)	deleterious(0.647)	HMMPfam_PBC
PBX1	5087	genome.wustl.edu	37	1	164790850	164790850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002585.2	+1	validated	p.P396L	1.000	346	0%	217	39.2%	-	-	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	NULL
LRRC52	440699	genome.wustl.edu	37	1	165532958	165532958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005214.3	+1	validated	p.S280L	0.952	157	0%	96	26%	-	-	benign(0.098)	tolerated(0.1)	neutral(0.294)	NULL
MGST3	4259	genome.wustl.edu	37	1	165624648	165624648	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004528.2	+1	reviewed	p.L122	0.942	127	0%	65	30.8%	-	-	-	-	-	HMMPfam_MAPEG
ALDH9A1	223	genome.wustl.edu	37	1	165636673	165636673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000696.3	-1	reviewed	p.D408Y	1.000	208	0%	91	33%	-	-	benign(0.313)	deleterious(0)	deleterious(0.542)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ILDR2	387597	genome.wustl.edu	37	1	166927185	166927185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199351.1	-1	provisional	p.G67V	0.991	219	0%	110	30%	-	-	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	HMMSmart_IG,superfamily_SSF48726
MAEL	84944	genome.wustl.edu	37	1	166958631	166958631	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032858.1	+1	validated	p.F14	1.000	99	0%	64	57.8%	-	-	-	-	-	superfamily_HMG-box,HMMPfam_DUF1898
GPA33	10223	genome.wustl.edu	37	1	167038311	167038311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005814.1	-1	reviewed	p.R88H	0.550	372	0%	204	39.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
DUSP27	92235	genome.wustl.edu	37	1	167064178	167064178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080426.1	+1	provisional	p.R31Q	1.000	55	0%	50	30%	-	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167097729	167097729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080426.1	+1	provisional	p.R1121W	0.995	106	0.9%	44	36.4%	-	-	benign(0.006)	tolerated(0.12)	neutral(0.261)	NULL
POU2F1	5451	genome.wustl.edu	37	1	167381535	167381535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002697.2	+1	provisional	p.A609V	1.000	76	0%	64	29.7%	-	-	unknown(0)	deleterious(0.01)	-	NULL
CREG1	8804	genome.wustl.edu	37	1	167511536	167511536	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003851.2	-1	reviewed	p.*221L	1.000	139	0%	85	40%	-	-	-	-	-	NULL
ADCY10	55811	genome.wustl.edu	37	1	167825520	167825520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.A685V	0.948	453	0%	224	33.9%	-	-	possibly_damaging(0.83)	tolerated(0.24)	neutral(0.353)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167847689	167847689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.E467D	1.000	327	0%	152	31.6%	-	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167871259	167871259	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.F96C	1.000	449	0%	173	43.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
SFT2D2	375035	genome.wustl.edu	37	1	168201100	168201100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199344.2	+1	validated	p.K60T	0.998	207	0%	105	38.1%	-	-	possibly_damaging(0.437)	tolerated(0.11)	neutral(0.414)	HMMPfam_SFT2
ATP1B1	481	genome.wustl.edu	37	1	169096473	169096473	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001677.3	+1	reviewed	p.E132*	0.126	290	0%	122	32.8%	-	-	-	-	-	HMMPfam_Na_K-ATPase
C1orf114	57821	genome.wustl.edu	37	1	169390861	169390861	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021179.1	-1	predicted	p.E270*	0.992	321	0%	200	16.5%	-	-	-	-	-	NULL
C1orf114	57821	genome.wustl.edu	37	1	169390924	169390924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021179.1	-1	predicted	p.E249K	0.955	308	0%	180	35.6%	-	-	benign(0.273)	tolerated(0.22)	neutral(0.071)	NULL
F5	2153	genome.wustl.edu	37	1	169511735	169511735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.H865Y	0.000	404	0%	206	31.6%	-	-	benign(0.123)	tolerated(0.07)	neutral(0.329)	NULL
F5	2153	genome.wustl.edu	37	1	169513613	169513613	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.I632	1.000	209	0%	90	33.3%	-	-	-	-	-	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169526089	169526089	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.A249	0.231	135	0%	89	14.6%	-	-	-	-	-	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169555523	169555523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.F34L	1.000	60	0%	55	47.3%	-	-	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	superfamily_Cupredoxins
SELP	6403	genome.wustl.edu	37	1	169564014	169564014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003005.3	-1	reviewed	p.L735I	0.996	429	0%	239	38.9%	-	-	benign(0.003)	tolerated(0.11)	neutral(0.272)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C1orf112	55732	genome.wustl.edu	37	1	169771776	169771776	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018186.2	+1	predicted	p.F27	1.000	109	0%	70	17.1%	-	-	-	-	-	NULL
SCYL3	57147	genome.wustl.edu	37	1	169824042	169824042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181093.2	-1	validated	p.S513L	0.000	168	0%	65	47.7%	-	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
SCYL3	57147	genome.wustl.edu	37	1	169845135	169845135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181093.2	-1	validated	p.S150Y	0.065	277	0%	192	39.6%	-	-	benign(0.412)	deleterious(0.05)	deleterious(0.478)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
PRRX1	5396	genome.wustl.edu	37	1	170688987	170688987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022716.2	+1	reviewed	p.A121D	0.999	187	0%	117	30.8%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
LOC646804	646804	genome.wustl.edu	37	1	171053032	171053032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929761.3	+1	model	p.L134I	0.968	124	0%	62	43.5%	-	-	-	-	-	NULL
FMO2	2327	genome.wustl.edu	37	1	171165807	171165807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001460.2	+1	reviewed	p.R114I	0.140	260	0%	180	32.8%	-	-	benign(0.327)	deleterious(0.02)	deleterious(0.485)	HMMPfam_FMO-like,superfamily_SSF51905
FMO2	2327	genome.wustl.edu	37	1	171174628	171174628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001460.2	+1	reviewed	p.E346D	0.002	245	0%	123	36.6%	-	-	probably_damaging(0.984)	tolerated(0.6)	neutral(0.435)	HMMPfam_FMO-like
FMO1	2326	genome.wustl.edu	37	1	171247878	171247878	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002021.1	+1	reviewed	p.A165	0.000	269	0%	133	37.6%	-	-	-	-	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
FMO4	2329	genome.wustl.edu	37	1	171300881	171300881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002022.1	+1	reviewed	p.G196E	1.000	405	0%	189	11.1%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
PRRC2C	23215	genome.wustl.edu	37	1	171509585	171509585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.R992C	0.995	87	0%	52	19.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171510258	171510258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.R1216Q	1.000	186	0%	109	24.8%	-	-	unknown(0)	-	-	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171544120	171544120	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.S2268A	0.997	254	0%	146	25.3%	-	-	probably_damaging(0.987)	-	-	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171553629	171553629	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.F2569L	1.000	59	0%	26	53.8%	-	-	possibly_damaging(0.866)	-	-	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171557624	171557624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.P2725S	1.000	262	0%	141	37.6%	-	-	probably_damaging(0.99)	-	-	NULL
VAMP4	8674	genome.wustl.edu	37	1	171697709	171697709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003762.4	-1	reviewed	p.R23I	1.000	121	0%	65	36.9%	-	-	possibly_damaging(0.918)	deleterious(0.02)	deleterious(0.752)	NULL
C1orf9	51430	genome.wustl.edu	37	1	172559003	172559003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014283.3	+1	validated	p.R921H	1.000	47	0%	27	40.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C1orf9	51430	genome.wustl.edu	37	1	172571286	172571286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014283.3	+1	validated	p.R1034Q	0.996	554	0%	220	30%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
TNFSF18	8995	genome.wustl.edu	37	1	173010677	173010677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005092.3	-1	reviewed	p.D144Y	0.000	442	0.2%	297	38.7%	-	-	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	HMMPfam_TNF,superfamily_TNF_like
TNFSF4	7292	genome.wustl.edu	37	1	173156005	173156005	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003326.3	-1	reviewed	e3-1	0.497	114	0%	73	38.4%	-	-	-	-	-	-
TNFSF4	7292	genome.wustl.edu	37	1	173157689	173157689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003326.3	-1	reviewed	p.R58Q	0.391	304	0%	110	29.1%	-	-	possibly_damaging(0.516)	tolerated(0.08)	deleterious(0.473)	NULL
LOC646870	646870	genome.wustl.edu	37	1	173332507	173332507	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040282.2	-1	model	NULL	0.989	95	0%	30	43.3%	-	-	-	-	-	-
SLC9A11	284525	genome.wustl.edu	37	1	173503633	173503633	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.S655*	0.090	58	0%	19	26.3%	-	-	-	-	-	HMMPfam_Ion_trans
SLC9A11	284525	genome.wustl.edu	37	1	173504994	173504994	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.E584*	0.344	79	1.3%	47	31.9%	-	-	-	-	-	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173567080	173567080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.D107G	0.972	357	0%	188	34.6%	-	-	possibly_damaging(0.773)	tolerated(0.48)	neutral(0.298)	HMMPfam_Na_H_Exchanger
KLHL20	27252	genome.wustl.edu	37	1	173722367	173722367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014458.3	+1	reviewed	p.R258C	1.000	208	0%	118	33.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BACK
SERPINC1	462	genome.wustl.edu	37	1	173878723	173878723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000488.3	-1	reviewed	p.D374N	1.000	104	0%	56	41.1%	-	-	probably_damaging(0.986)	tolerated(0.06)	deleterious(0.757)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINC1	462	genome.wustl.edu	37	1	173878808	173878808	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000488.3	-1	reviewed	p.E345	0.995	165	0%	118	34.7%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINC1	462	genome.wustl.edu	37	1	173878966	173878966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000488.3	-1	reviewed	p.R293W	0.058	126	0.8%	82	36.6%	-	-	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINC1	462	genome.wustl.edu	37	1	173881153	173881153	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000488.3	-1	reviewed	e3-1	1.000	401	0%	245	35.1%	-	-	-	-	-	-
GPR52	9293	genome.wustl.edu	37	1	174417316	174417316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005684.4	+1	validated	p.E23K	0.995	441	0%	259	38.6%	-	-	benign(0.03)	tolerated(0.39)	neutral(0.018)	superfamily_SSF81321
MRPS14	63931	genome.wustl.edu	37	1	174983923	174983923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022100.1	-1	reviewed	p.R90Q	1.000	140	0%	81	32.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ribosomal_S14,superfamily_SSF57716
TNN	63923	genome.wustl.edu	37	1	175049469	175049469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.L319I	0.012	166	0%	123	36.6%	-	-	benign(0.291)	tolerated(0.19)	neutral(0.139)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PAPPA2	60676	genome.wustl.edu	37	1	176659367	176659367	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.V744	0.998	96	0%	75	33.3%	-	-	-	-	-	"HMMPfam_Peptidase_M43,superfamily_Metalloproteases (""zincins"") catalytic domain"
PAPPA2	60676	genome.wustl.edu	37	1	176762725	176762725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.P1684S	0.981	737	0%	407	35.6%	-	-	benign(0.019)	tolerated(0.44)	neutral(0.014)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177917021	177917021	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033127.2	-1	validated	p.S534	0.891	110	0%	57	36.8%	-	-	-	-	-	NULL
RASAL2	9462	genome.wustl.edu	37	1	178411894	178411894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170692.2	+1	reviewed	p.E320K	1.000	178	0%	117	30.8%	-	-	benign(0.325)	deleterious(0)	deleterious(0.546)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
C1orf220	400798	genome.wustl.edu	37	1	178514911	178514911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000319387	+1	known	p.K99N	0.009	296	0.3%	145	38.6%	-	-	unknown(0)	-	-	NULL
ANGPTL1	9068	genome.wustl.edu	37	1	178834172	178834172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004673.3	-1	reviewed	p.R247I	1.000	185	0%	71	39.4%	-	-	benign(0.424)	deleterious(0.03)	deleterious(0.502)	NULL
RALGPS2	55103	genome.wustl.edu	37	1	178846734	178846734	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152663.3	+1	validated	p.R237*	1.000	206	0%	131	29%	-	-	-	-	-	HMMSmart_SM00147,superfamily_Ras GEF
ABL2	27	genome.wustl.edu	37	1	179076870	179076870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007314.3	-1	reviewed	p.D1178Y	1.000	141	0%	126	34.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F_actin_bind,HMMSmart_SM00808
ABL2	27	genome.wustl.edu	37	1	179102510	179102510	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007314.3	-1	reviewed	e2-1	1.000	424	0%	175	36.6%	-	-	-	-	-	-
AXDND1	126859	genome.wustl.edu	37	1	179335721	179335721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144696.4	+1	validated	p.V26A	0.000	201	0%	118	29.7%	-	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
TDRD5	163589	genome.wustl.edu	37	1	179561762	179561762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173533.2	+1	provisional	p.Q4H	0.987	236	0%	148	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TDRD5	163589	genome.wustl.edu	37	1	179605000	179605000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173533.2	+1	provisional	p.E500K	0.993	230	0%	107	17.8%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_TUDOR
FAM163A	148753	genome.wustl.edu	37	1	179782310	179782310	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173509.2	+1	provisional	p.C26	1.000	192	0%	129	43.4%	-	-	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180053257	180053257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.K2077Q	1.000	327	0%	105	13.3%	-	-	possibly_damaging(0.898)	deleterious(0)	deleterious(0.799)	NULL
CEP350	9857	genome.wustl.edu	37	1	180062302	180062302	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429851	+1	known	p.E529*	0.361	136	0%	90	42.2%	-	-	possibly_damaging(0.698)	tolerated(0.18)	neutral(0.307)	NULL
CEP350	9857	genome.wustl.edu	37	1	180062403	180062403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.I2388S	0.117	128	0%	80	31.2%	-	-	benign(0.068)	deleterious(0.01)	neutral(0.410)	NULL
CEP350	9857	genome.wustl.edu	37	1	180062442	180062442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.S2401Y	0.522	115	0%	64	31.2%	-	-	probably_damaging(0.996)	tolerated(0.28)	deleterious(0.493)	NULL
CEP350	9857	genome.wustl.edu	37	1	180063252	180063252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.S2671F	1.000	103	0%	56	37.5%	-	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
CEP350	9857	genome.wustl.edu	37	1	180063688	180063688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.F2816L	0.028	286	0%	157	14%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
QSOX1	5768	genome.wustl.edu	37	1	180147955	180147955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002826.4	+1	reviewed	p.A181V	0.966	435	0%	177	41.2%	-	-	-	-	-	NULL
QSOX1	5768	genome.wustl.edu	37	1	180163427	180163427	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002826.4	+1	reviewed	p.F456	0.771	35	0%	41	43.9%	-	-	-	-	-	HMMPfam_Evr1_Alr,superfamily_FAD-dependent thiol oxidase
LHX4	89884	genome.wustl.edu	37	1	180217588	180217588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033343.2	+1	reviewed	p.F82S	1.000	51	0%	37	29.7%	-	-	possibly_damaging(0.762)	tolerated(0.07)	deleterious(0.601)	HMMPfam_LIM,superfamily_SSF57716
LHX4	89884	genome.wustl.edu	37	1	180243658	180243658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033343.2	+1	reviewed	p.D373N	1.000	137	0%	88	29.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA1614	57710	genome.wustl.edu	37	1	180914448	180914448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020950.1	+1	validated	p.K1099N	0.002	31	0%	30	50%	-	-	benign(0.187)	tolerated(0.06)	neutral(0.340)	NULL
MR1	3140	genome.wustl.edu	37	1	181018211	181018211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001531.1	+1	provisional	p.R31C	0.000	225	0%	158	11.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
MR1	3140	genome.wustl.edu	37	1	181021594	181021594	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001531.1	+1	provisional	p.Y276	0.600	119	0%	68	45.6%	-	-	-	-	-	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
MR1	3140	genome.wustl.edu	37	1	181024396	181024396	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001531.1	+1	provisional	p.R341*	0.000	527	0%	319	36.1%	-	-	-	-	-	NULL
IER5	51278	genome.wustl.edu	37	1	181058869	181058869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016545.4	+1	validated	p.F277L	1.000	54	0%	26	30.8%	-	-	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	HMMPfam_IER
CACNA1E	777	genome.wustl.edu	37	1	181687205	181687205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.L514M	0.195	308	0%	169	30.2%	-	-	possibly_damaging(0.865)	deleterious(0.01)	deleterious(0.741)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181701629	181701629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.P803S	0.535	195	0%	127	37%	-	-	benign(0.401)	deleterious(0.02)	deleterious(0.512)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181726065	181726065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.L1378M	0.994	397	0%	216	38%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181759604	181759604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.S1937L	0.995	157	0%	135	37.8%	-	-	benign(0.014)	deleterious(0.02)	neutral(0.384)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181767953	181767953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.E2266K	1.000	55	0%	34	44.1%	-	-	benign(0.291)	deleterious(0.01)	deleterious(0.495)	NULL
ZNF648	127665	genome.wustl.edu	37	1	182026462	182026462	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009992.1	-1	provisional	p.R228	0.000	49	0%	51	49%	-	-	-	-	-	NULL
ZNF648	127665	genome.wustl.edu	37	1	182026583	182026583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009992.1	-1	provisional	p.S188Y	0.000	119	0%	86	40.7%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
ZNF648	127665	genome.wustl.edu	37	1	182026769	182026769	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009992.1	-1	provisional	p.L126R	0.063	189	0%	137	11.7%	-	-	probably_damaging(0.96)	tolerated(0.06)	deleterious(0.726)	NULL
RGSL1	353299	genome.wustl.edu	37	1	182443157	182443157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137669.1	+1	validated	p.R304I	0.000	159	0.6%	102	38.2%	-	-	-	-	-	NULL
RGSL1	353299	genome.wustl.edu	37	1	182443434	182443434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137669.1	+1	validated	p.E396D	0.269	271	0%	177	11.9%	-	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
RGSL1	353299	genome.wustl.edu	37	1	182496885	182496885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137669.1	+1	validated	p.F701L	0.990	132	0%	63	55.6%	-	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
RGSL1	353299	genome.wustl.edu	37	1	182517938	182517938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137669.1	+1	validated	p.V971A	0.018	483	0%	336	36%	-	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
NPL	80896	genome.wustl.edu	37	1	182783943	182783943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030769.1	+1	provisional	p.A105V	1.000	271	0%	155	24.5%	-	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_DHDPS,superfamily_Aldolase
DHX9	1660	genome.wustl.edu	37	1	182841526	182841526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.R538C	1.000	581	0%	286	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX9	1660	genome.wustl.edu	37	1	182845357	182845357	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.I663S	1.000	568	0%	347	37.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX9	1660	genome.wustl.edu	37	1	182852658	182852658	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.R1050*	1.000	199	0%	132	18.2%	-	-	-	-	-	HMMPfam_DUF1605
LAMC2	3918	genome.wustl.edu	37	1	183201888	183201888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005562.2	+1	reviewed	p.R706W	0.020	135	0%	93	23.7%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
LAMC2	3918	genome.wustl.edu	37	1	183212401	183212401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005562.2	+1	reviewed	p.R1150C	0.235	146	0%	99	28.3%	-	-	possibly_damaging(0.832)	deleterious(0.05)	deleterious(0.662)	NULL
NMNAT2	23057	genome.wustl.edu	37	1	183387338	183387338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015039.2	-1	reviewed	p.K22T	1.000	378	0%	262	35.9%	-	-	benign(0.288)	tolerated(0.07)	neutral(0.407)	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
SMG7	9887	genome.wustl.edu	37	1	183502380	183502380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173156.2	+1	validated	p.R309C	0.999	366	0.3%	256	17.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
APOBEC4	403314	genome.wustl.edu	37	1	183617354	183617354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203454.2	-1	reviewed	p.P188L	0.998	111	0%	62	48.4%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
TSEN15	116461	genome.wustl.edu	37	1	184020954	184020954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052965.2	+1	validated	p.R22H	0.001	29	0%	19	31.6%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
C1orf21	81563	genome.wustl.edu	37	1	184567565	184567565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030806.3	+1	validated	p.F99L	1.000	256	0%	130	33.8%	-	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
FAM129A	116496	genome.wustl.edu	37	1	184772778	184772778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052966.2	-1	validated	p.A499T	1.000	495	0%	268	36.6%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
TRMT1L	81627	genome.wustl.edu	37	1	185106636	185106636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000367504	-1	known	p.Y350D	0.999	43	0%	29	31%	-	-	benign(0.014)	deleterious(0.03)	neutral(0.365)	HMMPfam_TRM
TRMT1L	81627	genome.wustl.edu	37	1	185108630	185108630	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030934.4	-1	reviewed	p.V397	1.000	179	0%	88	37.5%	-	-	-	-	-	HMMPfam_TRM,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SWT1	54823	genome.wustl.edu	37	1	185143832	185143832	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105518.1	+1	validated	p.E185*	0.016	79	0%	31	22.6%	-	-	-	-	-	NULL
IVNS1ABP	10625	genome.wustl.edu	37	1	185269262	185269262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006469.4	-1	validated	p.G457E	1.000	424	0%	211	33.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
IVNS1ABP	10625	genome.wustl.edu	37	1	185270183	185270183	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006469.4	-1	validated	p.I347	0.928	432	0%	227	37%	-	-	-	-	-	NULL
HMCN1	83872	genome.wustl.edu	37	1	185878628	185878628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.R261C	1.000	422	0%	208	23.1%	-	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
HMCN1	83872	genome.wustl.edu	37	1	185892612	185892612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.S371Y	0.597	407	0%	179	34.1%	-	-	possibly_damaging(0.519)	tolerated(0.09)	deleterious(0.471)	NULL
HMCN1	83872	genome.wustl.edu	37	1	186007158	186007158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.P1948S	0.999	302	0%	147	29.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186059977	186059977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.G3272V	1.000	361	0%	144	38.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186062646	186062646	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.D3347	0.323	167	0%	85	38.8%	-	-	-	-	-	HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186141230	186141230	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.G5261*	1.000	363	0%	149	10.7%	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
PRG4	10216	genome.wustl.edu	37	1	186275713	186275713	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005807.3	+1	reviewed	p.E288*	0.006	322	0%	134	17.9%	-	-	-	-	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186276315	186276315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005807.3	+1	reviewed	p.K488N	0.002	646	0%	314	35%	-	-	unknown(0)	tolerated(0.11)	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186277618	186277618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005807.3	+1	reviewed	p.D923Y	0.001	531	0.2%	231	35.1%	-	-	unknown(0)	deleterious(0)	-	NULL
TPR	7175	genome.wustl.edu	37	1	186313627	186313627	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.A1099	0.996	491	0%	280	41.1%	-	-	-	-	-	HMMPfam_TPR_MLP1_2
TPR	7175	genome.wustl.edu	37	1	186322945	186322945	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.R737*	1.000	707	0.1%	452	35.8%	-	-	-	-	-	NULL
TPR	7175	genome.wustl.edu	37	1	186326602	186326602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.Q551K	1.000	444	0%	234	39.3%	-	-	probably_damaging(0.992)	tolerated(0.15)	deleterious(0.689)	NULL
PTGS2	5743	genome.wustl.edu	37	1	186648219	186648219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000963.2	-1	reviewed	p.R95Q	0.848	224	0%	98	27.6%	-	-	benign(0.305)	tolerated(0.06)	neutral(0.417)	superfamily_Heme-dependent peroxidases
PLA2G4A	5321	genome.wustl.edu	37	1	186863316	186863316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024420.2	+1	reviewed	p.K117N	1.000	384	0%	198	22.2%	-	-	possibly_damaging(0.819)	tolerated(0.1)	deleterious(0.596)	HMMSmart_SM00239,HMMSmart_SM00022,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PLA2G4A	5321	genome.wustl.edu	37	1	186957518	186957518	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024420.2	+1	reviewed	p.E710*	0.999	167	0%	87	33.3%	-	-	-	-	-	superfamily_FabD/lysophospholipase-like
FAM5C	339479	genome.wustl.edu	37	1	190067327	190067327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199051.1	-1	provisional	p.D708Y	1.000	259	0%	131	35.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM5C	339479	genome.wustl.edu	37	1	190068175	190068175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199051.1	-1	provisional	p.S425L	1.000	49	0%	34	38.2%	-	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	NULL
FAM5C	339479	genome.wustl.edu	37	1	190250795	190250795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199051.1	-1	provisional	p.F108I	1.000	359	0%	147	37.4%	-	-	benign(0.119)	tolerated(0.41)	neutral(0.025)	HMMPfam_MACPF,HMMSmart_SM00457
RGS18	64407	genome.wustl.edu	37	1	192127783	192127783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130782.2	+1	reviewed	p.L6F	0.088	150	0%	50	34%	-	-	benign(0.195)	tolerated(0.21)	neutral(0.062)	NULL
RGS18	64407	genome.wustl.edu	37	1	192153592	192153592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130782.2	+1	reviewed	p.P206S	1.000	257	0%	130	30%	-	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
UCHL5	51377	genome.wustl.edu	37	1	192998688	192998688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015984.2	-1	validated	p.E116*	1.000	169	0%	83	30.1%	-	-	-	-	-	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases
UCHL5	51377	genome.wustl.edu	37	1	193020941	193020941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015984.2	-1	validated	p.R28Q	1.000	99	0%	46	30.4%	-	-	benign(0.021)	tolerated(0.24)	neutral(0.038)	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases
CDC73	79577	genome.wustl.edu	37	1	193119484	193119484	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024529.4	+1	reviewed	p.Y293*	0.997	392	0%	185	34.1%	-	-	-	-	-	HMMPfam_CDC73
KCNT2	343450	genome.wustl.edu	37	1	196227623	196227623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198503.2	-1	validated	p.S971Y	1.000	608	0%	283	37.1%	-	-	probably_damaging(0.996)	tolerated(0.33)	deleterious(0.486)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196250054	196250054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198503.2	-1	validated	p.S949Y	1.000	263	0%	157	29.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196296002	196296002	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198503.2	-1	validated	p.Y707*	1.000	261	0%	145	11.7%	-	-	-	-	-	NULL
CFH	3075	genome.wustl.edu	37	1	196695740	196695740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000186.3	+1	reviewed	p.Q672K	0.913	228	0%	98	16.3%	-	-	benign(0.25)	tolerated(0.18)	neutral(0.082)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ASPM	259266	genome.wustl.edu	37	1	197073886	197073886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.R1499W	0.981	386	0%	172	34.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB41	360023	genome.wustl.edu	37	1	197128967	197128967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.S751Y	0.998	442	0.2%	191	38.2%	-	-	benign(0.156)	deleterious(0.02)	neutral(0.397)	NULL
ZBTB41	360023	genome.wustl.edu	37	1	197169288	197169288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.V106I	0.920	158	0%	81	30.9%	-	-	benign(0.415)	deleterious(0)	deleterious(0.579)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
DENND1B	163486	genome.wustl.edu	37	1	197581074	197581074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142795.1	-1	validated	p.S249F	1.000	216	0%	105	25.7%	-	-	benign(0.02)	deleterious(0.04)	neutral(0.350)	HMMPfam_DENN,HMMSmart_SM00799
LHX9	56956	genome.wustl.edu	37	1	197889243	197889243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020204.2	+1	reviewed	p.E106K	1.000	94	0%	64	29.7%	-	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LHX9	56956	genome.wustl.edu	37	1	197896895	197896895	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020204.2	+1	reviewed	p.K303T	1.000	340	0%	180	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
PTPRC	5788	genome.wustl.edu	37	1	198665999	198665999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002838.3	+1	reviewed	p.P85T	0.000	366	0%	191	35.1%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
NR5A2	2494	genome.wustl.edu	37	1	200090020	200090020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205860.1	+1	validated	p.R439C	1.000	413	0%	218	37.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
NR5A2	2494	genome.wustl.edu	37	1	200143225	200143225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205860.1	+1	validated	p.E505K	1.000	119	0%	51	41.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
NR5A2	2494	genome.wustl.edu	37	1	200143280	200143280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205860.1	+1	validated	p.N523T	1.000	107	0%	46	21.7%	-	-	benign(0.145)	tolerated(0.15)	neutral(0.254)	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
FAM58BP	339521	genome.wustl.edu	37	1	200182877	200182877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105517.1	+1	provisional	p.F62L	1.000	450	0%	233	30.9%	-	-	-	-	-	HMMSmart_CYCLIN,superfamily_Cyclin_like
FAM58BP	339521	genome.wustl.edu	37	1	200183162	200183162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105517.1	+1	provisional	p.K157N	0.819	133	0%	85	42.4%	-	-	-	-	-	superfamily_Cyclin_like
DDX59	83479	genome.wustl.edu	37	1	200613543	200613543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031725.4	-1	validated	p.T567A	1.000	724	0%	354	31.1%	-	-	possibly_damaging(0.902)	tolerated(0.68)	neutral(0.359)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX59	83479	genome.wustl.edu	37	1	200619746	200619746	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031725.4	-1	validated	p.I374S	0.088	205	0%	116	31.9%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CAMSAP2	23271	genome.wustl.edu	37	1	200730181	200730181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203459.1	+1	validated	p.E118D	0.917	277	0%	114	31.6%	-	-	benign(0.007)	tolerated(1)	-	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200776524	200776524	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203459.1	+1	validated	p.I140	0.128	240	0.4%	146	42.5%	-	-	-	-	-	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200817508	200817508	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203459.1	+1	validated	p.I537	0.121	73	0%	50	26%	-	-	-	-	-	NULL
CACNA1S	779	genome.wustl.edu	37	1	201028413	201028413	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000069.2	-1	reviewed	p.S1143	0.011	282	0%	148	33.1%	-	-	-	-	-	superfamily_SSF81324
CACNA1S	779	genome.wustl.edu	37	1	201052335	201052335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000069.2	-1	reviewed	p.A450T	1.000	123	0%	152	29.6%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_SSF81324
IGFN1	91156	genome.wustl.edu	37	1	201195194	201195194	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412892	+1	known	p.A994V	0.971	68	0%	33	33.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NAV1	89796	genome.wustl.edu	37	1	201618149	201618149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020443.4	+1	reviewed	p.A118V	0.996	57	0%	30	13.3%	-	-	benign(0.003)	tolerated(0.08)	neutral(0.300)	NULL
NAV1	89796	genome.wustl.edu	37	1	201781642	201781642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020443.4	+1	reviewed	p.R1689C	1.000	132	0%	79	32.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA
NAV1	89796	genome.wustl.edu	37	1	201786409	201786409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020443.4	+1	reviewed	p.P1842H	1.000	145	0%	90	12.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IPO9	55705	genome.wustl.edu	37	1	201826283	201826283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018085.4	+1	validated	p.F394L	0.998	390	0%	215	36.3%	-	-	possibly_damaging(0.676)	tolerated(0.21)	neutral(0.284)	superfamily_ARM repeat
IPO9	55705	genome.wustl.edu	37	1	201839936	201839936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018085.4	+1	validated	p.R787C	1.000	126	0%	80	35%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
IPO9	55705	genome.wustl.edu	37	1	201845203	201845203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456707	+1	known	p.F104S	0.000	123	0%	124	36.3%	-	-	unknown(0)	-	-	NULL
GPR37L1	9283	genome.wustl.edu	37	1	202092436	202092436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004767.3	+1	validated	p.Q115H	0.997	204	0%	146	41.1%	-	-	possibly_damaging(0.688)	tolerated(0.19)	neutral(0.295)	superfamily_Family A G protein-coupled receptor-like
LGR6	59352	genome.wustl.edu	37	1	202274869	202274869	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017403.1	+1	reviewed	p.L376	1.000	302	0.3%	181	12.2%	-	-	-	-	-	HMMSmart_SM00369,superfamily_RNI-like
SYT2	127833	genome.wustl.edu	37	1	202569597	202569597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136504.1	-1	validated	p.E269D	1.000	89	0%	56	32.1%	-	-	possibly_damaging(0.725)	tolerated(0.18)	neutral(0.320)	NULL
SYT2	127833	genome.wustl.edu	37	1	202571123	202571123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136504.1	-1	validated	p.F232L	1.000	441	0%	322	17.1%	-	-	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SYT2	127833	genome.wustl.edu	37	1	202574767	202574767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136504.1	-1	validated	p.A45D	0.042	195	0%	130	39.2%	-	-	unknown(0)	tolerated(0.73)	-	NULL
SYT2	127833	genome.wustl.edu	37	1	202574775	202574775	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136504.1	-1	validated	p.D42	1.000	201	0%	127	31.5%	-	-	-	-	-	NULL
KDM5B	10765	genome.wustl.edu	37	1	202705360	202705360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	p.S1082Y	1.000	247	0%	120	36.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PLU-1
KDM5B	10765	genome.wustl.edu	37	1	202710590	202710590	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	p.P950	0.017	110	0%	52	11.5%	-	-	-	-	-	HMMPfam_PLU-1
ADIPOR1	51094	genome.wustl.edu	37	1	202911204	202911204	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127687.1	-1	validated	p.L316	0.986	125	0%	69	47.8%	-	-	-	-	-	HMMPfam_HlyIII
TMEM183A	92703	genome.wustl.edu	37	1	202977900	202977900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138391.4	+1	validated	p.R110K	0.370	161	0%	106	31.1%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
ATP2B4	493	genome.wustl.edu	37	1	203668844	203668844	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001684.3	+1	reviewed	p.Y216	0.943	203	0%	128	41.4%	-	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ATP2B4	493	genome.wustl.edu	37	1	203676142	203676142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001684.3	+1	reviewed	p.L369F	0.962	386	0%	225	38.7%	-	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
ATP2B4	493	genome.wustl.edu	37	1	203680140	203680140	+	Silent	SNP	C	C	T	rs181836521	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001684.3	+1	reviewed	p.F645	0.280	180	0%	97	40.2%	-	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP2B4	493	genome.wustl.edu	37	1	203681232	203681232	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001684.3	+1	reviewed	p.E726*	1.000	168	0%	103	33%	-	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
SOX13	9580	genome.wustl.edu	37	1	204091088	204091088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005686.2	+1	reviewed	p.A279V	0.891	79	0%	55	30.9%	-	-	benign(0.01)	tolerated(0.11)	neutral(0.272)	NULL
REN	5972	genome.wustl.edu	37	1	204125010	204125010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000537.3	-1	reviewed	p.D333N	0.024	158	0%	94	17%	-	-	benign(0.213)	tolerated(0.49)	neutral(0.032)	HMMPfam_Asp,superfamily_Acid proteases
GOLT1A	127845	genome.wustl.edu	37	1	204183023	204183023	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198447.1	-1	provisional	p.I4	0.996	85	0%	69	34.8%	-	-	-	-	-	NULL
PIK3C2B	5287	genome.wustl.edu	37	1	204393999	204393999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002646.3	-1	reviewed	p.R1629Q	0.993	86	0%	71	36.6%	-	-	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
LRRN2	10446	genome.wustl.edu	37	1	204588876	204588876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006338.2	-1	reviewed	p.V82A	0.026	84	0%	77	31.2%	-	-	benign(0)	tolerated(1)	-	superfamily_L domain-like
NFASC	23114	genome.wustl.edu	37	1	204919703	204919703	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000367172	+1	known	e2+1	1.000	723	0.1%	424	34.4%	-	-	-	-	-	-
NFASC	23114	genome.wustl.edu	37	1	204945944	204945944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000403080	+1	known	p.W618R	0.000	118	0%	64	37.5%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
CNTN2	6900	genome.wustl.edu	37	1	205027709	205027709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005076.2	+1	reviewed	p.F135L	1.000	55	0%	38	34.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48726
RBBP5	5929	genome.wustl.edu	37	1	205068201	205068201	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005057.2	-1	reviewed	p.E338*	1.000	678	0%	396	33.1%	-	-	-	-	-	superfamily_WD40 repeat-like
NUCKS1	64710	genome.wustl.edu	37	1	205688686	205688686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022731.3	-1	validated	p.K167N	1.000	172	0%	117	31.6%	-	-	benign(0.113)	deleterious(0.01)	neutral(0.415)	NULL
SLC26A9	115019	genome.wustl.edu	37	1	205889323	205889323	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134325.2	-1	reviewed	p.V697	1.000	987	0%	462	36.6%	-	-	-	-	-	HMMPfam_STAS,superfamily_STAS
SLC26A9	115019	genome.wustl.edu	37	1	205892742	205892742	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134325.2	-1	reviewed	e13-1	1.000	281	0%	157	41.4%	-	-	-	-	-	-
AVPR1B	553	genome.wustl.edu	37	1	206224451	206224451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000707.3	+1	reviewed	p.G4V	0.000	45	0%	23	39.1%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
IKBKE	9641	genome.wustl.edu	37	1	206649639	206649639	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014002.2	+1	validated	p.F158	0.970	222	0%	159	10.7%	-	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
LGTN	100529141	genome.wustl.edu	37	1	206781604	206781604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006893.2	-1	reviewed	p.S136Y	1.000	116	0%	54	31.5%	-	-	benign(0.171)	deleterious(0.02)	neutral(0.399)	HMMSmart_SM00359,superfamily_PUA domain-like
MAPKAPK2	9261	genome.wustl.edu	37	1	206902160	206902160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032960.2	+1	reviewed	p.A129T	0.988	60	0%	57	29.8%	-	-	benign(0.028)	tolerated(0.57)	neutral(0.007)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IL20	50604	genome.wustl.edu	37	1	207040741	207040741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018724.3	+1	reviewed	p.T131A	0.622	531	0.2%	227	32.6%	-	-	benign(0.001)	tolerated(0.85)	neutral(0.001)	superfamily_4_helix_cytokine,HMMPfam_IL10,HMMSmart_IL10
FCAMR	83953	genome.wustl.edu	37	1	207139192	207139192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122979.2	-1	validated	p.A61T	0.542	138	0.7%	69	29%	-	-	benign(0.009)	tolerated(0.59)	neutral(0.005)	NULL
C1orf116	79098	genome.wustl.edu	37	1	207196680	207196680	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023938.5	-1	validated	p.S143	0.991	100	0%	48	12.5%	-	-	-	-	-	NULL
PFKFB2	5208	genome.wustl.edu	37	1	207237135	207237135	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006212.2	+1	reviewed	p.S156	0.988	303	0%	232	39.2%	-	-	-	-	-	HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases
PFKFB2	5208	genome.wustl.edu	37	1	207242845	207242845	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006212.2	+1	reviewed	p.K355T	1.000	349	0%	148	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
C4BPB	725	genome.wustl.edu	37	1	207262916	207262916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000716.3	+1	reviewed	p.R14*	0.073	1313	0%	739	37.8%	-	-	-	-	-	NULL
C4BPA	722	genome.wustl.edu	37	1	207314569	207314569	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000715.3	+1	reviewed	p.A464	0.000	214	0%	135	34.8%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR2	1380	genome.wustl.edu	37	1	207639999	207639999	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.L63	0.000	225	0%	90	33.3%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR2	1380	genome.wustl.edu	37	1	207648364	207648364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.R840Q	0.000	324	0%	200	33.5%	-	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
CR2	1380	genome.wustl.edu	37	1	207658861	207658861	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.E1081*	0.011	136	0%	52	26.9%	-	-	-	-	-	NULL
CR1	1378	genome.wustl.edu	37	1	207697226	207697226	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434033	+1	known	p.E229*	0.000	301	0%	186	25.8%	-	-	benign(0.239)	deleterious(0.04)	neutral(0.373)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CD46	4179	genome.wustl.edu	37	1	207934629	207934629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172359.1	+1	reviewed	p.G171*	0.695	272	0%	155	28.4%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
LOC642587	642587	genome.wustl.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	AGCAGCAGCAGC	AGCAGCAGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104548.1	+1	validated	p.AAAA88in_frame_del	0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
CAMK1G	57172	genome.wustl.edu	37	1	209779760	209779760	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020439.2	+1	reviewed	p.S177	1.000	265	0%	143	18.2%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CAMK1G	57172	genome.wustl.edu	37	1	209784873	209784873	+	Missense_Mutation	SNP	G	G	T	rs187124482	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020439.2	+1	reviewed	p.K297N	1.000	182	0%	109	33.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Protein kinase-like (PK-like)
LAMB3	3914	genome.wustl.edu	37	1	209797298	209797298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.T675M	0.432	128	0%	71	32.4%	-	-	benign(0.08)	tolerated(0.37)	neutral(0.025)	NULL
DIEXF	27042	genome.wustl.edu	37	1	210003461	210003461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014388.5	+1	validated	p.R39I	0.776	696	0%	364	29.7%	-	-	benign(0.353)	tolerated(0.14)	neutral(0.361)	NULL
SERTAD4	56256	genome.wustl.edu	37	1	210415098	210415098	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019605.3	+1	validated	p.E163*	1.000	241	0%	131	42.7%	-	-	-	-	-	NULL
HHAT	55733	genome.wustl.edu	37	1	210536252	210536252	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122834.2	+1	validated	p.G50*	1.000	357	0%	160	13.1%	-	-	-	-	-	NULL
KCNH1	3756	genome.wustl.edu	37	1	210977486	210977486	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172362.2	-1	reviewed	p.F495	0.993	520	0.4%	242	31.8%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNH1	3756	genome.wustl.edu	37	1	211093014	211093014	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172362.2	-1	reviewed	p.K477T	1.000	181	0%	125	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNH1	3756	genome.wustl.edu	37	1	211093238	211093238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172362.2	-1	reviewed	p.D402E	1.000	348	0%	241	29.5%	-	-	benign(0.003)	tolerated(0.36)	neutral(0.020)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NEK2	4751	genome.wustl.edu	37	1	211842553	211842553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002497.2	-1	validated	p.S296L	0.000	403	0%	216	39.4%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	superfamily_Protein kinase-like (PK-like)
PPP2R5A	5525	genome.wustl.edu	37	1	212530319	212530319	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006243.2	+1	reviewed	p.I336F	1.000	251	0%	117	40.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_B56,superfamily_ARM repeat
PPP2R5A	5525	genome.wustl.edu	37	1	212532091	212532091	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006243.2	+1	reviewed	p.F430	0.916	177	0%	124	37.1%	-	-	-	-	-	HMMPfam_B56,superfamily_ARM repeat
NENF	29937	genome.wustl.edu	37	1	212619266	212619266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013349.4	+1	reviewed	p.R146I	0.962	214	0%	131	38.9%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
NSL1	25936	genome.wustl.edu	37	1	212965006	212965006	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015471.3	-1	reviewed	p.E34*	0.653	22	0%	30	23.3%	-	-	-	-	-	NULL
VASH2	79805	genome.wustl.edu	37	1	213134543	213134543	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024749.3	+1	validated	p.S104	0.971	492	0%	242	29.8%	-	-	-	-	-	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213290671	213290671	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012424.3	+1	validated	p.N131H	0.997	450	0%	217	45.2%	-	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	superfamily_PX domain
RPS6KC1	26750	genome.wustl.edu	37	1	213303054	213303054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012424.3	+1	validated	p.E219D	0.955	226	0%	139	12.9%	-	-	benign(0.006)	tolerated(0.18)	neutral(0.056)	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213414990	213414990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012424.3	+1	validated	p.K724R	0.933	146	0%	60	46.7%	-	-	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213434921	213434921	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012424.3	+1	validated	p.E978*	1.000	609	0%	300	31%	-	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RPS6KC1	26750	genome.wustl.edu	37	1	213445931	213445931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012424.3	+1	validated	p.S1052Y	1.000	715	0%	423	34.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CENPF	1063	genome.wustl.edu	37	1	214787230	214787230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.E45K	1.000	133	0%	60	46.7%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214818706	214818706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.E1931D	0.996	93	0%	35	37.1%	-	-	probably_damaging(0.971)	tolerated(0.29)	neutral(0.442)	NULL
KCTD3	51133	genome.wustl.edu	37	1	215749301	215749301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016121.3	+1	validated	p.K81E	1.000	232	0%	92	28.3%	-	-	possibly_damaging(0.736)	tolerated(0.14)	deleterious(0.518)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCTD3	51133	genome.wustl.edu	37	1	215793708	215793708	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016121.3	+1	validated	p.A732	0.060	231	0%	84	42.9%	-	-	-	-	-	NULL
USH2A	7399	genome.wustl.edu	37	1	215847918	215847918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.E4445D	0.672	293	0%	131	32.8%	-	-	benign(0.129)	tolerated(0.6)	neutral(0.015)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215848350	215848350	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.Q4301	0.929	246	0%	90	38.9%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215848668	215848668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.F4195L	0.001	327	0%	159	34.6%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215932006	215932006	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.E3774*	1.000	536	0%	268	32.1%	-	-	-	-	-	HMMSmart_SM00060
USH2A	7399	genome.wustl.edu	37	1	215953364	215953364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.Q3587R	1.000	218	0%	139	36%	-	-	benign(0.051)	deleterious(0.02)	neutral(0.386)	superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216373013	216373013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.S1256Y	1.000	223	0%	107	36.4%	-	-	possibly_damaging(0.843)	deleterious(0.03)	deleterious(0.688)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
USH2A	7399	genome.wustl.edu	37	1	216380709	216380709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.W1074C	1.000	425	0.2%	144	41%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
USH2A	7399	genome.wustl.edu	37	1	216497671	216497671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.F389L	0.999	442	0%	194	34%	-	-	possibly_damaging(0.765)	deleterious(0.01)	deleterious(0.690)	HMMPfam_Laminin_N,HMMSmart_SM00136
USH2A	7399	genome.wustl.edu	37	1	216595278	216595278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.S134N	0.001	287	0%	167	36.5%	-	-	benign(0)	tolerated(1)	-	superfamily_Concanavalin A-like lectins/glucanases
ESRRG	2104	genome.wustl.edu	37	1	216824367	216824367	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001438.2	-1	validated	p.S179	0.996	350	0%	203	13.3%	-	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
GPATCH2	55105	genome.wustl.edu	37	1	217665071	217665071	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018040.2	-1	provisional	p.R410*	1.000	250	0%	141	23.4%	-	-	-	-	-	NULL
LYPLAL1	127018	genome.wustl.edu	37	1	219383881	219383881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138794.3	+1	validated	p.F123L	1.000	236	0%	69	44.9%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases
LYPLAL1	127018	genome.wustl.edu	37	1	219385011	219385011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138794.3	+1	validated	p.D219Y	1.000	243	0%	112	37.5%	-	-	benign(0.237)	deleterious(0.04)	neutral(0.372)	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases
IARS2	55699	genome.wustl.edu	37	1	220311381	220311381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018060.3	+1	validated	p.S724N	0.005	179	0%	101	37.6%	-	-	benign(0)	tolerated(0.37)	neutral(0.019)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAB3GAP2	25782	genome.wustl.edu	37	1	220364491	220364491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012414.3	-1	reviewed	p.A469V	1.000	261	0%	142	26.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOC100287901	100287901	genome.wustl.edu	37	1	221057467	221057467	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342169.1	-1	model	p.L236	0.000	33	0%	11	36.4%	-	-	-	-	-	NULL
HHIPL2	79802	genome.wustl.edu	37	1	222716944	222716944	+	Missense_Mutation	SNP	C	C	A	rs142197988	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024746.3	-1	validated	p.K303N	1.000	159	0%	113	23%	-	-	probably_damaging(0.989)	tolerated(0.2)	deleterious(0.488)	superfamily_Quino_gluc_DH
DISP1	84976	genome.wustl.edu	37	1	223177193	223177193	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032890.2	+1	reviewed	p.I818	0.423	136	0%	71	19.7%	-	-	-	-	-	HMMPfam_Patched
SUSD4	55061	genome.wustl.edu	37	1	223402693	223402693	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017982.3	-1	validated	p.F254	1.000	221	0%	126	38.9%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SUSD4	55061	genome.wustl.edu	37	1	223438009	223438009	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017982.3	-1	validated	p.I229	1.000	163	0%	87	28.7%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CAPN8	388743	genome.wustl.edu	37	1	223807110	223807110	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143962.1	-1	validated	p.I340	1.000	97	0%	40	40%	-	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN8	388743	genome.wustl.edu	37	1	223842082	223842082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143962.1	-1	validated	p.Q86R	1.000	384	0%	144	39.6%	-	-	probably_damaging(0.986)	tolerated(0.38)	neutral(0.452)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN2	824	genome.wustl.edu	37	1	223947075	223947075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001748.4	+1	reviewed	p.R474H	1.000	149	0%	102	27.5%	-	-	possibly_damaging(0.691)	deleterious(0.04)	deleterious(0.597)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)
DEGS1	8560	genome.wustl.edu	37	1	224377383	224377383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003676.2	+1	reviewed	p.D63Y	1.000	162	0%	78	34.6%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
MIR320B2	100313769	genome.wustl.edu	37	1	224444786	224444786	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408479	-1	known	NULL	0.013	183	0%	100	33%	-	-	-	-	-	-
DNAH14	127602	genome.wustl.edu	37	1	225380527	225380527	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.R1912*	0.996	252	0%	136	32.4%	-	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH14	127602	genome.wustl.edu	37	1	225394715	225394715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.L2056M	0.019	142	0%	93	32.3%	-	-	probably_damaging(0.989)	tolerated(0.12)	deleterious(0.700)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH14	127602	genome.wustl.edu	37	1	225452926	225452926	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.L2416*	0.000	186	0%	83	22.9%	-	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH14	127602	genome.wustl.edu	37	1	225453015	225453015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.L2446I	1.000	188	0%	87	34.5%	-	-	benign(0.21)	tolerated(0.05)	neutral(0.366)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH14	127602	genome.wustl.edu	37	1	225490969	225490969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.Y2822H	0.995	212	0%	127	29.1%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH14	127602	genome.wustl.edu	37	1	225539517	225539517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.S3729Y	0.000	261	0%	184	30.4%	-	-	benign(0.359)	deleterious(0.01)	deleterious(0.520)	HMMPfam_Dynein_heavy
DNAH14	127602	genome.wustl.edu	37	1	225555683	225555683	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.Y3996	0.958	158	0%	93	43%	-	-	-	-	-	HMMPfam_Dynein_heavy
DNAH14	127602	genome.wustl.edu	37	1	225562424	225562424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.G4025V	0.000	211	0%	123	14.6%	-	-	benign(0.011)	tolerated(0.25)	neutral(0.037)	HMMPfam_Dynein_heavy
C1orf55	163859	genome.wustl.edu	37	1	226173130	226173130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152608.3	-1	validated	p.A410V	0.416	208	0%	135	38.5%	-	-	benign(0.148)	tolerated(0.12)	neutral(0.274)	NULL
H3F3A	3020	genome.wustl.edu	37	1	226252163	226252163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002107.3	+1	reviewed	p.K37N	1.000	165	0%	50	38%	-	-	possibly_damaging(0.85)	-	-	HMMSmart_SM00428,superfamily_Histone-fold
LIN9	286826	genome.wustl.edu	37	1	226475389	226475389	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173083.2	-1	provisional	p.E141V	1.000	295	0%	134	17.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C1orf95	375057	genome.wustl.edu	37	1	226784609	226784609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003665.2	+1	predicted	p.Q103H	1.000	194	0%	144	31.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ITPKB	3707	genome.wustl.edu	37	1	226923701	226923701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.D487Y	0.002	51	0%	37	37.8%	-	-	possibly_damaging(0.479)	deleterious(0.04)	deleterious(0.507)	NULL
PSEN2	5664	genome.wustl.edu	37	1	227081812	227081812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000447.2	+1	reviewed	p.V393M	1.000	70	0%	47	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Presenilin,HMMSmart_SM00730
CDC42BPA	8476	genome.wustl.edu	37	1	227400844	227400844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003607.3	-1	reviewed	p.R116I	1.000	301	0%	104	30.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MRPL55	128308	genome.wustl.edu	37	1	228295714	228295714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181462.2	-1	reviewed	p.R33Q	0.000	45	0%	27	51.9%	-	-	benign(0.016)	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228470924	228470924	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.D2892	0.128	27	0%	17	41.2%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228470927	228470927	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.A2893	0.000	24	0%	19	36.8%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228473933	228473933	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.I3053	0.002	53	0%	54	31.5%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228480406	228480406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R3596C	0.963	378	0.3%	213	32.9%	-	-	unknown(0)	tolerated(0.11)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228525656	228525656	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441106	+1	known	p.L220I	1.000	194	0%	102	40.2%	-	-	-	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228527765	228527765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.S5793L	0.998	170	0%	101	37.6%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
OBSCN	84033	genome.wustl.edu	37	1	228539083	228539083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R6161C	1.000	96	0%	51	39.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
NUP133	55746	genome.wustl.edu	37	1	229631267	229631267	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018230.2	-1	reviewed	p.R341*	0.144	638	0%	345	33.3%	-	-	-	-	-	HMMPfam_Nup133_N
ABCB10	23456	genome.wustl.edu	37	1	229676434	229676434	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012089.2	-1	reviewed	p.I374	0.587	446	0%	206	38.3%	-	-	-	-	-	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
URB2	9816	genome.wustl.edu	37	1	229770932	229770932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014777.2	+1	provisional	p.R191I	0.553	88	0%	64	32.8%	-	-	possibly_damaging(0.922)	tolerated(0.06)	deleterious(0.694)	NULL
URB2	9816	genome.wustl.edu	37	1	229795031	229795031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014777.2	+1	provisional	p.R1521I	0.998	122	0%	56	44.6%	-	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
GALNT2	2590	genome.wustl.edu	37	1	230372463	230372463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004481.3	+1	reviewed	p.R200Q	1.000	346	0%	143	36.4%	-	-	benign(0.022)	tolerated(0.32)	neutral(0.025)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
EXOC8	149371	genome.wustl.edu	37	1	231471626	231471626	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175876.3	-1	validated	p.K622	0.978	252	0%	188	11.2%	-	-	-	-	-	NULL
C1orf124	83932	genome.wustl.edu	37	1	231488776	231488776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032018.4	+1	validated	p.R380I	0.721	151	0%	92	38%	-	-	probably_damaging(0.962)	tolerated(0.07)	deleterious(0.724)	NULL
C1orf124	83932	genome.wustl.edu	37	1	231488860	231488860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032018.4	+1	validated	p.R408Q	0.645	119	0%	69	18.8%	-	-	possibly_damaging(0.943)	tolerated(0.27)	neutral(0.421)	NULL
EGLN1	54583	genome.wustl.edu	37	1	231506425	231506425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022051.2	-1	reviewed	p.R344Q	1.000	269	0%	141	25.5%	-	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
DISC1	27185	genome.wustl.edu	37	1	231906689	231906689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018662.2	+1	reviewed	p.D503N	0.959	38	0%	24	54.2%	-	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	superfamily_Prefoldin
SIPA1L2	57568	genome.wustl.edu	37	1	232534998	232534998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.L1682F	0.997	400	0%	220	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232581433	232581433	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.T1065	0.003	69	0%	36	30.6%	-	-	-	-	-	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232649900	232649900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.D396N	1.000	187	0%	104	27.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NTPCR	84284	genome.wustl.edu	37	1	233091383	233091383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032324.1	+1	provisional	p.E39K	1.000	323	0%	118	38.1%	-	-	possibly_damaging(0.889)	deleterious(0.05)	deleterious(0.695)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCNXL2	80003	genome.wustl.edu	37	1	233190032	233190032	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014801.3	-1	provisional	p.R1445*	0.994	215	0%	118	28.8%	-	-	-	-	-	NULL
TARBP1	6894	genome.wustl.edu	37	1	234565233	234565233	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005646.3	-1	reviewed	p.E934*	0.989	131	0%	66	25.8%	-	-	-	-	-	NULL
RBM34	23029	genome.wustl.edu	37	1	235295086	235295086	+	Missense_Mutation	SNP	G	G	A	rs188131274	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015014.2	-1	validated	p.T407M	1.000	280	0%	151	21.9%	-	-	unknown(0)	tolerated(0.1)	-	NULL
RBM34	23029	genome.wustl.edu	37	1	235295218	235295218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015014.2	-1	validated	p.F363C	0.003	240	0%	134	21.6%	-	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235397749	235397749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016374.5	-1	reviewed	p.R215Q	1.000	135	0.7%	72	29.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_RBB1NT
TBCE	6905	genome.wustl.edu	37	1	235577911	235577911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079515.1	+1	reviewed	p.D117Y	1.000	280	0%	121	27.3%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SSF52047
LYST	1130	genome.wustl.edu	37	1	235875362	235875362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.R3307H	1.000	57	0%	16	31.2%	-	-	probably_damaging(1)	-	-	HMMPfam_Beach,superfamily_BEACH domain
LYST	1130	genome.wustl.edu	37	1	235904858	235904858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.R2741Q	1.000	487	0%	252	32.9%	-	-	probably_damaging(1)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235922765	235922765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.D2130N	0.564	361	0%	172	43%	-	-	possibly_damaging(0.811)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235969240	235969240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.E1066K	0.065	231	0%	117	23.1%	-	-	possibly_damaging(0.775)	deleterious(0.02)	deleterious(0.671)	NULL
LYST	1130	genome.wustl.edu	37	1	235969998	235969998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.R813L	1.000	169	0%	92	12%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NID1	4811	genome.wustl.edu	37	1	236143832	236143832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002508.2	-1	reviewed	p.D1117N	1.000	136	0%	77	16.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
ERO1LB	56605	genome.wustl.edu	37	1	236389705	236389705	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019891.3	-1	validated	p.L306V	0.998	308	0%	160	23.1%	-	-	benign(0.007)	tolerated(1)	-	HMMPfam_ERO1,superfamily_ERO1
HEATR1	55127	genome.wustl.edu	37	1	236730117	236730117	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018072.4	-1	validated	p.I1379	0.998	134	0%	82	34.1%	-	-	-	-	-	superfamily_ARM-type_fold
RYR2	6262	genome.wustl.edu	37	1	237664159	237664159	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.I784	0.283	652	0%	429	38.9%	-	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237732586	237732586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.E1189*	1.000	579	0%	252	34.9%	-	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237755058	237755058	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.K1394Q	1.000	260	0%	222	35.6%	-	-	benign(0.025)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237756813	237756813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.P1438L	0.999	325	0%	185	36.8%	-	-	possibly_damaging(0.832)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237777627	237777627	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.T1733	0.003	145	0%	78	37.2%	-	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237787152	237787152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.D2002Y	1.000	381	0%	189	27%	-	-	possibly_damaging(0.537)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237791289	237791289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.I2117V	1.000	275	0%	159	32.7%	-	-	benign(0.007)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237831213	237831213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.H2849N	1.000	168	0%	72	33.3%	-	-	probably_damaging(0.999)	-	-	HMMPfam_RyR
RYR2	6262	genome.wustl.edu	37	1	237868521	237868521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.S3153F	1.000	462	0%	238	31.5%	-	-	probably_damaging(0.976)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237948018	237948018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.D4336Y	1.000	146	0%	82	43.9%	-	-	probably_damaging(1)	-	-	HMMPfam_RR_TM4-6
RYR2	6262	genome.wustl.edu	37	1	237969499	237969499	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.F4738L	1.000	847	0%	466	38.8%	-	-	probably_damaging(0.988)	-	-	HMMPfam_Ion_trans
RYR2	6262	genome.wustl.edu	37	1	237969579	237969579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.K4765T	1.000	566	0%	298	29.2%	-	-	probably_damaging(0.999)	-	-	HMMPfam_Ion_trans
CHRM3	1131	genome.wustl.edu	37	1	240071070	240071070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000740.2	+1	reviewed	p.L107F	1.000	270	0%	179	35.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
FMN2	56776	genome.wustl.edu	37	1	240497516	240497516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.K1584N	0.999	95	0%	43	16.3%	-	-	benign(0.122)	tolerated(0.17)	neutral(0.069)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
FMN2	56776	genome.wustl.edu	37	1	240635679	240635679	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.E1690*	1.000	219	0%	82	30.5%	-	-	-	-	-	superfamily_FH2_actin_bd
FMN2	56776	genome.wustl.edu	37	1	240635684	240635684	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.A1691	0.967	238	0%	82	46.3%	-	-	-	-	-	superfamily_FH2_actin_bd
OPN3	23596	genome.wustl.edu	37	1	241757989	241757989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014322.2	-1	reviewed	p.R317Q	1.000	220	0%	135	25.2%	-	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	superfamily_Family A G protein-coupled receptor-like
WDR64	128025	genome.wustl.edu	37	1	241875152	241875152	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144625.4	+1	validated	p.Y51*	0.997	563	0%	258	33.7%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR64	128025	genome.wustl.edu	37	1	241904856	241904856	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144625.4	+1	validated	p.I164L	1.000	336	0%	199	35.2%	-	-	benign(0.122)	tolerated(0.2)	neutral(0.059)	superfamily_WD40 repeat-like
WDR64	128025	genome.wustl.edu	37	1	241913010	241913010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144625.4	+1	validated	p.I296V	0.961	298	0%	146	23.3%	-	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	superfamily_WD40 repeat-like
EXO1	9156	genome.wustl.edu	37	1	242042136	242042136	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006027.4	+1	reviewed	p.E534*	0.001	244	0%	117	30.8%	-	-	-	-	-	NULL
EXO1	9156	genome.wustl.edu	37	1	242042355	242042355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006027.4	+1	reviewed	p.S607G	1.000	320	0%	184	14.1%	-	-	benign(0.009)	tolerated(0.07)	neutral(0.320)	NULL
EXO1	9156	genome.wustl.edu	37	1	242042541	242042541	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006027.4	+1	reviewed	p.E669*	0.000	104	0%	60	31.7%	-	-	-	-	-	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243471352	243471352	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006642.2	+1	validated	p.E268*	1.000	323	0%	157	26.8%	-	-	-	-	-	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243471358	243471358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006642.2	+1	validated	p.L270I	1.000	345	0%	162	42.6%	-	-	possibly_damaging(0.461)	tolerated(0.22)	neutral(0.193)	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243589797	243589797	+	Missense_Mutation	SNP	G	G	T	rs34075794		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006642.2	+1	validated	p.R641I	0.998	407	0%	146	27.4%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
C1orf100	200159	genome.wustl.edu	37	1	244538733	244538733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012970.1	+1	predicted	p.R39I	0.996	190	0%	101	35.6%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
C1orf100	200159	genome.wustl.edu	37	1	244541860	244541860	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012970.1	+1	predicted	p.R82*	0.015	202	0%	106	39.6%	-	-	-	-	-	NULL
ADSS	159	genome.wustl.edu	37	1	244600972	244600972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126.2	-1	reviewed	p.F94L	1.000	204	0%	103	40.8%	-	-	benign(0.005)	tolerated(0.87)	neutral(0.001)	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
C1orf101	257044	genome.wustl.edu	37	1	244640842	244640842	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130957.1	+1	validated	e3-1	0.994	346	0%	136	32.4%	-	-	-	-	-	-
C1orf101	257044	genome.wustl.edu	37	1	244736068	244736068	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130957.1	+1	validated	p.K648N	0.996	78	0%	48	31.2%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
C1orf101	257044	genome.wustl.edu	37	1	244803309	244803309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130957.1	+1	validated	p.R928W	0.001	704	0%	395	39.7%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
HNRNPU	3192	genome.wustl.edu	37	1	245019775	245019775	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031844.2	-1	reviewed	p.A632	0.843	626	0%	231	39%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
HNRNPU	3192	genome.wustl.edu	37	1	245020049	245020049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031844.2	-1	reviewed	p.R575Q	1.000	160	0%	91	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HNRNPU	3192	genome.wustl.edu	37	1	245021391	245021391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031844.2	-1	reviewed	p.E472D	0.046	344	0%	193	37.3%	-	-	benign(0.009)	tolerated(0.47)	neutral(0.011)	NULL
KIF26B	55083	genome.wustl.edu	37	1	245850935	245850935	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018012.3	+1	provisional	p.P1550	0.425	28	0%	38	21.1%	-	-	-	-	-	NULL
SMYD3	64754	genome.wustl.edu	37	1	246091336	246091336	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022743.2	-1	validated	e6-1	1.000	182	0%	99	31.3%	-	-	-	-	-	-
AHCTF1	25909	genome.wustl.edu	37	1	247063645	247063645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.S415L	1.000	103	0%	31	32.3%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247079561	247079561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.F86L	0.998	214	0%	107	28%	-	-	possibly_damaging(0.921)	tolerated(0.08)	deleterious(0.671)	NULL
ZNF695	57116	genome.wustl.edu	37	1	247150534	247150534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020394.3	-1	validated	p.R428I	1.000	145	0%	115	37.4%	-	-	benign(0.044)	tolerated(0.33)	neutral(0.026)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF695	57116	genome.wustl.edu	37	1	247150870	247150870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020394.3	-1	validated	p.R316I	0.996	143	0%	103	40.8%	-	-	benign(0.167)	tolerated(0.32)	neutral(0.039)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF669	79862	genome.wustl.edu	37	1	247265337	247265337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024804.2	-1	validated	p.L114F	0.966	218	0%	130	33.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF496	84838	genome.wustl.edu	37	1	247464564	247464564	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032752.1	-1	provisional	p.R341*	0.000	56	0%	39	35.9%	-	-	-	-	-	NULL
OR2B11	127623	genome.wustl.edu	37	1	247614766	247614766	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004492.1	-1	provisional	p.C173	0.988	127	0%	69	37.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2W5	441932	genome.wustl.edu	37	1	247654488	247654488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004698.2	+1	validated	p.R20Q	0.002	511	0%	250	34.4%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR2W5	441932	genome.wustl.edu	37	1	247654969	247654969	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004698.2	+1	validated	p.E180	0.903	130	0%	88	43.2%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR14K1	343170	genome.wustl.edu	37	1	247901967	247901967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000283225	+1	known	p.E17D	0.000	177	0.6%	108	29.6%	-	-	benign(0.017)	tolerated(1)	neutral(0.001)	superfamily_SSF81321
OR2M5	127059	genome.wustl.edu	37	1	248308588	248308588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004690.1	+1	provisional	p.L47I	0.000	1097	0.1%	585	36.1%	-	-	possibly_damaging(0.735)	tolerated(0.13)	deleterious(0.521)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M5	127059	genome.wustl.edu	37	1	248308963	248308963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004690.1	+1	provisional	p.R172W	0.000	772	0%	425	35.3%	-	-	benign(0.074)	deleterious(0.03)	neutral(0.369)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M2	391194	genome.wustl.edu	37	1	248344216	248344216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004688.1	+1	provisional	p.S310Y	0.000	415	0%	240	40.8%	-	-	possibly_damaging(0.631)	tolerated(1)	neutral(0.221)	superfamily_SSF81321
OR2M2	391194	genome.wustl.edu	37	1	248344272	248344272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004688.1	+1	provisional	p.L329I	0.000	380	0%	198	33.3%	-	-	unknown(0)	tolerated(1)	-	NULL
OR2T33	391195	genome.wustl.edu	37	1	248436884	248436884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004695.1	-1	provisional	p.K78T	0.432	555	0.2%	356	22.5%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T33	391195	genome.wustl.edu	37	1	248436932	248436932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004695.1	-1	provisional	p.S62N	0.048	610	0%	364	31.9%	-	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T12	127064	genome.wustl.edu	37	1	248458162	248458162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004692.1	-1	provisional	p.S240Y	0.000	645	0.2%	371	39.6%	-	-	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T12	127064	genome.wustl.edu	37	1	248458648	248458648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004692.1	-1	provisional	p.K78T	0.002	249	0%	157	15.3%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M7	391196	genome.wustl.edu	37	1	248487125	248487125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004691.1	-1	provisional	p.G249E	0.000	454	0%	266	36.1%	-	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512348	248512348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001918.1	+1	provisional	p.S91Y	0.310	226	0%	206	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512601	248512601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001918.1	+1	provisional	p.F175L	0.941	430	0%	272	10.7%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T2	401992	genome.wustl.edu	37	1	248616122	248616122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004136.1	+1	provisional	p.Q8H	0.152	619	0%	369	17.1%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
ZNF692	55657	genome.wustl.edu	37	1	249144602	249144602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136036.1	-1	provisional	p.R461H	0.916	200	0%	147	12.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
PGBD2	267002	genome.wustl.edu	37	1	249211486	249211486	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170725.2	+1	validated	p.E235*	0.012	144	0%	90	38.9%	-	-	-	-	-	NULL
ACP1	52	genome.wustl.edu	37	2	277076	277076	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004300.3	+1	reviewed	p.D130E	1.000	287	0%	158	25.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_LMWPc,HMMSmart_SM00226,superfamily_Phosphotyrosine protein phosphatases I
SNTG2	54221	genome.wustl.edu	37	2	1093886	1093886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018968.3	+1	reviewed	p.R72I	1.000	447	0%	351	47%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PDZ domain-like
PXDN	7837	genome.wustl.edu	37	2	1643195	1643195	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	e20-1	1.000	248	0%	159	34.6%	-	-	-	-	-	-
MYT1L	23040	genome.wustl.edu	37	2	1926269	1926269	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.F424	0.986	305	0%	240	29.6%	-	-	-	-	-	NULL
RNASEH1	246243	genome.wustl.edu	37	2	3599783	3599783	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002936.3	-1	validated	p.P120	0.000	207	0%	170	31.2%	-	-	-	-	-	NULL
SOX11	6664	genome.wustl.edu	37	2	5834120	5834120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003108.3	+1	reviewed	p.E423K	1.000	17	0%	14	35.7%	-	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
RNF144A	9781	genome.wustl.edu	37	2	7154897	7154897	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014746.3	+1	reviewed	p.E99*	1.000	311	0%	226	27.9%	-	-	-	-	-	HMMPfam_IBR,HMMSmart_IBR
KIDINS220	57498	genome.wustl.edu	37	2	8934087	8934087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020738.2	-1	validated	p.R377C	1.000	255	0%	150	44%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MBOAT2	129642	genome.wustl.edu	37	2	9098719	9098719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138799.2	-1	validated	p.R43Q	1.000	202	0%	113	60.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITGB1BP1	9270	genome.wustl.edu	37	2	9552496	9552496	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004763.3	-1	reviewed	p.R64*	1.000	293	0%	196	25.5%	-	-	-	-	-	HMMSmart_SM00462,HMMPfam_ICAP-1_inte_bdg
ADAM17	6868	genome.wustl.edu	37	2	9637279	9637279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003183.4	-1	reviewed	p.E583K	1.000	316	0%	289	47.1%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
ADAM17	6868	genome.wustl.edu	37	2	9666374	9666374	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003183.4	-1	reviewed	e6-1	1.000	373	0%	226	46.5%	-	-	-	-	-	-
TAF1B	9014	genome.wustl.edu	37	2	10053379	10053379	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005680.2	+1	reviewed	e12+1	1.000	325	0%	212	42.5%	-	-	-	-	-	-
GRHL1	29841	genome.wustl.edu	37	2	10105453	10105453	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198182.2	+1	reviewed	p.I162	0.951	276	0%	259	52.5%	-	-	-	-	-	HMMPfam_CP2
RRM2	6241	genome.wustl.edu	37	2	10269488	10269488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034.3	+1	reviewed	p.S382Y	1.000	229	0%	161	43.5%	-	-	benign(0.072)	deleterious(0.04)	neutral(0.354)	NULL
C2orf48	348738	genome.wustl.edu	37	2	10350612	10350612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182626.1	+1	predicted	p.K123N	0.001	71	0%	62	41.9%	-	-	unknown(0)	-	-	NULL
ODC1	4953	genome.wustl.edu	37	2	10580954	10580954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002539.1	-1	reviewed	p.E428K	0.140	196	0%	129	31.8%	-	-	benign(0.006)	tolerated(0.65)	neutral(0.003)	NULL
NOL10	79954	genome.wustl.edu	37	2	10729370	10729370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024894.2	-1	validated	p.S548L	1.000	637	0%	474	51.5%	-	-	benign(0.01)	tolerated(0.05)	neutral(0.346)	NULL
ATP6V1C2	245973	genome.wustl.edu	37	2	10862998	10862998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039362.1	+1	reviewed	p.S8Y	1.000	467	0.2%	351	12%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-ATPase_C
ROCK2	9475	genome.wustl.edu	37	2	11332628	11332628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004850.3	-1	reviewed	p.C1300R	1.000	238	0%	198	27.8%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,superfamily_PH domain-like,superfamily_Cysteine-rich domain
ROCK2	9475	genome.wustl.edu	37	2	11367486	11367486	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004850.3	-1	reviewed	p.P254	0.936	651	0%	433	52.2%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ROCK2	9475	genome.wustl.edu	37	2	11427799	11427799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004850.3	-1	reviewed	p.D69Y	1.000	86	0%	46	45.7%	-	-	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	superfamily_Protein kinase-like (PK-like)
GREB1	9687	genome.wustl.edu	37	2	11738969	11738969	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014668.3	+1	reviewed	p.A772	0.794	342	0%	277	26.7%	-	-	-	-	-	NULL
GREB1	9687	genome.wustl.edu	37	2	11758812	11758812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014668.3	+1	reviewed	p.S1271P	0.904	32	0%	37	29.7%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
TRIB2	28951	genome.wustl.edu	37	2	12880745	12880745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021643.3	+1	reviewed	p.R286Q	1.000	157	0%	117	16.2%	-	-	benign(0.211)	tolerated(0.06)	neutral(0.343)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NBAS	51594	genome.wustl.edu	37	2	15417059	15417059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015909.2	-1	validated	p.C1769R	0.944	280	0%	177	14.1%	-	-	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
DDX1	1653	genome.wustl.edu	37	2	15746297	15746297	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004939.1	+1	reviewed	p.F242	0.952	139	0%	130	31.5%	-	-	-	-	-	HMMPfam_SPRY,HMMPfam_DEAD,HMMSmart_SM00487,HMMSmart_SM00449,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX1	1653	genome.wustl.edu	37	2	15760382	15760382	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004939.1	+1	reviewed	p.S419	0.096	465	0%	254	47.2%	-	-	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GEN1	348654	genome.wustl.edu	37	2	17962005	17962005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130009.1	+1	validated	p.S509L	0.000	198	0%	126	27%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
KCNS3	3790	genome.wustl.edu	37	2	18112325	18112325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002252.3	+1	reviewed	p.V17A	1.000	211	0%	145	17.9%	-	-	benign(0.102)	deleterious(0.05)	neutral(0.353)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
NT5C1B	93034	genome.wustl.edu	37	2	18765855	18765855	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002006.1	-1	validated	p.D276	0.000	33	0%	38	60.5%	-	-	unknown(0)	-	-	NULL
WDR35	57539	genome.wustl.edu	37	2	20131037	20131037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006657.1	-1	reviewed	p.S997I	0.959	343	0%	223	50.2%	-	-	benign(0.359)	tolerated(0.25)	neutral(0.151)	NULL
APOB	338	genome.wustl.edu	37	2	21228636	21228636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.L3702I	0.958	142	0%	83	48.2%	-	-	probably_damaging(0.961)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21232229	21232229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.S2504Y	0.000	320	0%	279	51.6%	-	-	possibly_damaging(0.924)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21245748	21245748	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.F924C	0.976	125	0%	121	53.7%	-	-	benign(0.354)	-	-	HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
APOB	338	genome.wustl.edu	37	2	21249714	21249714	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.V730	0.999	275	0%	174	47.1%	-	-	-	-	-	HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
APOB	338	genome.wustl.edu	37	2	21260010	21260010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.R219C	0.013	308	0%	228	26.3%	-	-	benign(0.023)	-	-	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
KLHL29	114818	genome.wustl.edu	37	2	23865407	23865407	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000288548	+1	known	p.R49H	1.000	36	0%	31	41.9%	-	-	-	-	-	NULL
ATAD2B	54454	genome.wustl.edu	37	2	23985121	23985121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017552.1	-1	validated	p.N1118H	1.000	656	0%	370	34.3%	-	-	possibly_damaging(0.447)	tolerated(0.1)	neutral(0.432)	NULL
ATAD2B	54454	genome.wustl.edu	37	2	24107638	24107638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017552.1	-1	validated	p.E261*	1.000	601	0%	334	34.7%	-	-	-	-	-	NULL
MFSD2B	388931	genome.wustl.edu	37	2	24246968	24246968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080473.1	+1	provisional	p.F439L	0.793	98	0%	83	41%	-	-	benign(0.171)	tolerated(0.07)	neutral(0.335)	superfamily_MFS_gen_substrate_transporter
ITSN2	50618	genome.wustl.edu	37	2	24469131	24469131	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416160	-1	known	p.S76F	1.000	298	0%	194	13.4%	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ITSN2	50618	genome.wustl.edu	37	2	24484069	24484069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006277.2	-1	reviewed	p.S863Y	1.000	410	0%	201	10.4%	-	-	possibly_damaging(0.674)	deleterious(0.05)	deleterious(0.585)	NULL
NCOA1	8648	genome.wustl.edu	37	2	24974941	24974941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003743.4	+1	reviewed	p.S1266Y	1.000	202	0%	124	31.5%	-	-	possibly_damaging(0.849)	deleterious(0)	deleterious(0.770)	HMMPfam_DUF1518
PTRHD1	391356	genome.wustl.edu	37	2	25013389	25013389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013663.1	-1	predicted	p.H105P	1.000	334	0%	183	43.7%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_PTH2,superfamily_SSF102462
ADCY3	109	genome.wustl.edu	37	2	25048913	25048913	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004036.3	-1	reviewed	e15+1	1.000	156	0%	86	39.5%	-	-	-	-	-	-
ASXL2	55252	genome.wustl.edu	37	2	26068357	26068357	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018263.4	-1	validated	p.E45*	1.000	111	0%	33	45.5%	-	-	-	-	-	NULL
KIF3C	3797	genome.wustl.edu	37	2	26203305	26203305	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002254.6	-1	validated	p.E494	1.000	162	0%	135	36.3%	-	-	-	-	-	NULL
KIF3C	3797	genome.wustl.edu	37	2	26203602	26203602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002254.6	-1	validated	p.E395D	1.000	176	0%	151	17.2%	-	-	benign(0.024)	tolerated(0.46)	neutral(0.013)	NULL
HADHB	3032	genome.wustl.edu	37	2	26501519	26501519	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000183.2	+1	reviewed	p.I160	0.004	783	0%	490	37.1%	-	-	-	-	-	HMMPfam_Thiolase_N,superfamily_Thiolase-like
GPR113	165082	genome.wustl.edu	37	2	26537451	26537451	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145168.1	-1	validated	p.W321*	0.972	129	0%	96	28.1%	-	-	-	-	-	NULL
OTOF	9381	genome.wustl.edu	37	2	26683855	26683855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.K1859N	1.000	57	0%	38	23.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OTOF	9381	genome.wustl.edu	37	2	26703153	26703153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.F610L	1.000	122	0%	83	24.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MAPRE3	22924	genome.wustl.edu	37	2	27247038	27247038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012326.2	+1	reviewed	p.F114L	1.000	176	0%	65	35.4%	-	-	benign(0.037)	deleterious(0.04)	neutral(0.351)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
OST4	100128731	genome.wustl.edu	37	2	27294230	27294230	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134693.1	-1	validated	p.K34T	1.000	133	0%	62	24.2%	-	-	-	-	-	HMMPfam_Ost4,superfamily_Oligosaccharyltransferase subunit ost4p
EMILIN1	11117	genome.wustl.edu	37	2	27303608	27303608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007046.3	+1	reviewed	p.R100H	1.000	50	0%	34	29.4%	-	-	benign(0.27)	deleterious(0.02)	neutral(0.412)	HMMPfam_EMI
EMILIN1	11117	genome.wustl.edu	37	2	27308116	27308116	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433140	+1	known	p.P219H	1.000	275	0%	171	40.9%	-	-	-	-	-	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
KHK	3795	genome.wustl.edu	37	2	27322540	27322540	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000221.2	+1	reviewed	p.S273	0.987	109	0%	102	30.4%	-	-	-	-	-	HMMPfam_PfkB,superfamily_Ribokinase-like
C2orf28	51374	genome.wustl.edu	37	2	27439484	27439484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080592.3	+1	reviewed	p.R249H	1.000	533	0%	315	22.9%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
MPV17	4358	genome.wustl.edu	37	2	27535603	27535603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002437.4	-1	reviewed	p.R75W	1.000	736	0%	363	33.9%	-	-	benign(0.025)	deleterious(0)	neutral(0.446)	NULL
EIF2B4	8890	genome.wustl.edu	37	2	27591261	27591261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172195.3	-1	reviewed	p.N210D	0.715	376	0%	161	32.9%	-	-	benign(0.01)	tolerated(0.67)	neutral(0.003)	superfamily_NagB/RpiA/CoA transferase-like
PPM1G	5496	genome.wustl.edu	37	2	27607947	27607947	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177983.1	-1	reviewed	p.E140*	1.000	102	0%	74	16.2%	-	-	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
IFT172	26160	genome.wustl.edu	37	2	27672398	27672398	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015662.1	-1	validated	p.E1398*	1.000	171	0%	120	42.5%	-	-	-	-	-	NULL
IFT172	26160	genome.wustl.edu	37	2	27677499	27677499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015662.1	-1	validated	p.R1134W	1.000	186	0.5%	110	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FNDC4	64838	genome.wustl.edu	37	2	27715610	27715610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022823.2	-1	validated	p.D198Y	1.000	472	0%	261	16.9%	-	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27800304	27800304	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032266.3	+1	validated	p.E289*	0.369	147	0%	93	49.5%	-	-	-	-	-	NULL
C2orf16	84226	genome.wustl.edu	37	2	27804138	27804138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032266.3	+1	validated	p.R1567C	0.000	154	0%	82	39%	-	-	unknown(0)	deleterious(0)	-	NULL
ZNF512	84450	genome.wustl.edu	37	2	27830896	27830896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032434.2	+1	validated	p.D374A	1.000	177	0%	63	33.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FOSL2	2355	genome.wustl.edu	37	2	28635251	28635251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005253.3	+1	reviewed	p.R306I	1.000	57	0%	29	20.7%	-	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
PLB1	151056	genome.wustl.edu	37	2	28863842	28863842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153021.4	+1	validated	p.R1383Q	0.997	321	0%	203	40.9%	-	-	probably_damaging(1)	tolerated(0.41)	deleterious(0.515)	NULL
PPP1CB	5500	genome.wustl.edu	37	2	29004610	29004610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002709.2	+1	reviewed	p.R141Q	1.000	330	0%	152	30.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
SPDYA	245711	genome.wustl.edu	37	2	29052062	29052062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142634.1	+1	validated	p.E143D	1.000	382	0%	180	10%	-	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
FAM179A	165186	genome.wustl.edu	37	2	29217725	29217725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199280.2	+1	validated	p.E9K	0.008	100	0%	66	31.8%	-	-	benign(0.224)	tolerated(0.72)	neutral(0.024)	NULL
C2orf71	388939	genome.wustl.edu	37	2	29295799	29295799	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029883.1	-1	provisional	p.I443	0.000	256	0%	151	32.5%	-	-	-	-	-	NULL
CLIP4	79745	genome.wustl.edu	37	2	29356629	29356629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024692.4	+1	validated	p.Y159C	1.000	370	0.3%	185	34.1%	-	-	probably_damaging(0.961)	deleterious(0.03)	deleterious(0.768)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ALK	238	genome.wustl.edu	37	2	29455225	29455225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.E859D	1.000	170	0%	101	27.7%	-	-	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	NULL
ALK	238	genome.wustl.edu	37	2	29456524	29456524	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.N798	0.997	451	0%	285	28.8%	-	-	-	-	-	NULL
ALK	238	genome.wustl.edu	37	2	29606657	29606657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.S408Y	0.992	158	0%	100	41%	-	-	possibly_damaging(0.834)	deleterious(0.01)	deleterious(0.724)	NULL
CAPN13	92291	genome.wustl.edu	37	2	30954256	30954256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144575.2	-1	validated	p.R646H	0.001	331	0%	101	22.8%	-	-	benign(0.045)	tolerated(0.38)	neutral(0.020)	superfamily_EF-hand
CAPN14	440854	genome.wustl.edu	37	2	31417277	31417277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145122.1	-1	validated	p.F316L	1.000	223	0%	150	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
XDH	7498	genome.wustl.edu	37	2	31605874	31605874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000379.3	-1	reviewed	p.S344Y	1.000	114	0.9%	98	11.2%	-	-	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	HMMPfam_FAD_binding_5,superfamily_FAD-binding_2
SRD5A2	6716	genome.wustl.edu	37	2	31758781	31758781	+	Missense_Mutation	SNP	G	G	T	rs28383048	byCluster;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000233139	-1	known	p.L112I	0.017	164	0%	70	37.1%	-	-	-	-	-	HMMPfam_Steroid_dh
MEMO1	51072	genome.wustl.edu	37	2	32145881	32145881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015955.2	-1	validated	p.R104H	1.000	141	0%	58	27.6%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_Memo
SLC30A6	55676	genome.wustl.edu	37	2	32445306	32445306	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017964.2	+1	provisional	p.R304*	1.000	143	0%	123	26%	-	-	-	-	-	HMMPfam_Cation_efflux
BIRC6	57448	genome.wustl.edu	37	2	32640968	32640968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.R870Q	1.000	122	0%	63	41.3%	-	-	probably_damaging(0.987)	tolerated(0.25)	deleterious(0.473)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32641017	32641017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.K886N	1.000	152	0%	82	40.2%	-	-	possibly_damaging(0.784)	tolerated(0.42)	neutral(0.307)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32724814	32724814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.R2890Q	1.000	387	0%	291	24.7%	-	-	probably_damaging(0.995)	tolerated(0.16)	deleterious(0.517)	NULL
TTC27	55622	genome.wustl.edu	37	2	33045992	33045992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017735.3	+1	provisional	p.R840Q	0.994	129	0%	86	30.2%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
RASGRP3	25780	genome.wustl.edu	37	2	33741704	33741704	+	Missense_Mutation	SNP	C	C	A	rs74600205	byCluster;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139488.1	+1	validated	p.L56I	1.000	370	0.5%	217	35.9%	-	-	possibly_damaging(0.867)	tolerated(0.43)	neutral(0.350)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
CRIM1	51232	genome.wustl.edu	37	2	36749273	36749273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016441.1	+1	provisional	p.V749I	1.000	354	0%	189	18%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
HEATR5B	54497	genome.wustl.edu	37	2	37295928	37295928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019024.1	-1	validated	p.S358F	1.000	85	0%	50	28%	-	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	superfamily_ARM repeat
EIF2AK2	5610	genome.wustl.edu	37	2	37374085	37374085	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135651.1	-1	validated	p.E51*	0.192	441	0%	255	39.2%	-	-	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
CEBPZ	10153	genome.wustl.edu	37	2	37454714	37454714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005760.2	-1	validated	p.S541L	1.000	110	0%	53	22.6%	-	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_CBF,superfamily_ARM repeat
CEBPZ	10153	genome.wustl.edu	37	2	37455856	37455856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005760.2	-1	validated	p.K160N	1.000	383	0%	221	32.1%	-	-	benign(0.253)	tolerated(0.24)	neutral(0.064)	NULL
C2orf56	55471	genome.wustl.edu	37	2	37474684	37474684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144736.4	+1	validated	p.R341Q	1.000	246	0%	120	24.2%	-	-	possibly_damaging(0.474)	deleterious(0.05)	deleterious(0.502)	HMMPfam_DUF185
PRKD3	23683	genome.wustl.edu	37	2	37501727	37501727	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005813.3	-1	reviewed	p.F496	1.000	231	0%	136	41.2%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PRKD3	23683	genome.wustl.edu	37	2	37506902	37506902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005813.3	-1	reviewed	p.V387I	0.987	241	0%	119	32.8%	-	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
CDC42EP3	10602	genome.wustl.edu	37	2	37873677	37873677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006449.3	-1	reviewed	p.K18N	1.000	588	0%	284	34.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC344382	344382	genome.wustl.edu	37	2	38044737	38044737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_293026.6	+1	model	p.S227Y	1.000	295	0%	164	27.4%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
FAM82A1	151393	genome.wustl.edu	37	2	38202383	38202383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144713.3	+1	validated	p.R397Q	0.937	423	0%	188	35.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM82A1	151393	genome.wustl.edu	37	2	38208472	38208472	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431895	+1	known	p.T55A	0.912	244	0%	134	32.1%	-	-	-	-	-	NULL
ATL2	64225	genome.wustl.edu	37	2	38540366	38540366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135673.1	-1	validated	p.R244Q	1.000	339	0%	202	24.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATL2	64225	genome.wustl.edu	37	2	38546104	38546104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135673.1	-1	validated	p.G141S	1.000	437	0%	242	37.6%	-	-	probably_damaging(0.972)	tolerated(0.09)	deleterious(0.710)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100288550	100288550	genome.wustl.edu	37	2	38709330	38709330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342215.1	-1	model	p.A82S	1.000	154	0%	106	25.5%	-	-	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39029908	39029908	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452978	-1	known	p.R601C	0.889	300	0%	187	32.6%	-	-	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39088970	39088970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198963.1	-1	provisional	p.F194L	0.990	61	0%	45	28.9%	-	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMPfam_UBA
ARHGEF33	100271715	genome.wustl.edu	37	2	39158386	39158386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145451.2	+1	validated	p.E167K	1.000	213	0%	100	39%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MAP4K3	8491	genome.wustl.edu	37	2	39487798	39487798	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003618.2	-1	reviewed	p.R753*	1.000	258	0%	108	23.1%	-	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
MAP4K3	8491	genome.wustl.edu	37	2	39583454	39583454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003618.2	-1	reviewed	p.E61K	1.000	458	0%	289	13.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TMEM178	130733	genome.wustl.edu	37	2	39944196	39944196	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152390.2	+1	validated	p.S233	0.996	549	0%	230	12.2%	-	-	-	-	-	NULL
THUMPD2	80745	genome.wustl.edu	37	2	39998659	39998659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025264.4	-1	validated	p.S53Y	0.730	172	0%	67	37.3%	-	-	possibly_damaging(0.924)	deleterious(0.04)	deleterious(0.722)	NULL
SLC8A1	6546	genome.wustl.edu	37	2	40366691	40366691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021097.2	-1	validated	p.N799Y	1.000	279	0%	123	35.8%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
EML4	27436	genome.wustl.edu	37	2	42488317	42488317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019063.3	+1	validated	p.S132Y	1.000	468	0%	177	36.7%	-	-	possibly_damaging(0.932)	deleterious(0.02)	deleterious(0.762)	NULL
EML4	27436	genome.wustl.edu	37	2	42488344	42488344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019063.3	+1	validated	p.I141T	0.931	598	0%	217	17.5%	-	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
EML4	27436	genome.wustl.edu	37	2	42490424	42490424	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019063.3	+1	validated	p.K207Q	1.000	362	0%	159	11.3%	-	-	possibly_damaging(0.9)	tolerated(0.08)	deleterious(0.656)	NULL
THADA	63892	genome.wustl.edu	37	2	43801696	43801696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083953.1	-1	validated	p.R503I	0.988	168	0%	76	14.5%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43921627	43921627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172069.3	+1	validated	p.E132*	1.000	399	0%	155	20%	-	-	-	-	-	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43933552	43933552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172069.3	+1	validated	p.K606N	0.993	376	0.3%	244	38.1%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43937714	43937714	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172069.3	+1	validated	p.Q767	1.000	125	0%	57	47.4%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ABCG8	64241	genome.wustl.edu	37	2	44099149	44099149	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022437.2	+1	reviewed	p.E333	0.809	134	0%	98	37.8%	-	-	-	-	-	NULL
LRPPRC	10128	genome.wustl.edu	37	2	44115743	44115743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133259.3	-1	reviewed	p.S1394Y	0.000	394	0%	231	23.8%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
PREPL	9581	genome.wustl.edu	37	2	44573526	44573526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006036.4	-1	reviewed	p.L75I	0.994	461	0%	222	25.2%	-	-	benign(0.006)	tolerated(0.21)	neutral(0.044)	HMMPfam_Peptidase_S9_N
SRBD1	55133	genome.wustl.edu	37	2	45826719	45826719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018079.4	-1	validated	p.D173Y	0.903	654	0%	426	36.9%	-	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
SRBD1	55133	genome.wustl.edu	37	2	45829099	45829099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018079.4	-1	validated	p.K68N	0.991	509	0%	216	34.7%	-	-	possibly_damaging(0.718)	deleterious(0.02)	deleterious(0.643)	NULL
PRKCE	5581	genome.wustl.edu	37	2	46231741	46231741	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005400.2	+1	reviewed	p.R343*	1.000	290	0%	177	39%	-	-	-	-	-	NULL
SOCS5	9655	genome.wustl.edu	37	2	46985850	46985850	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014011.4	+1	reviewed	p.E61*	1.000	248	0%	106	34%	-	-	-	-	-	NULL
SOCS5	9655	genome.wustl.edu	37	2	46985902	46985902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014011.4	+1	reviewed	p.R78K	1.000	227	0%	104	35.6%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
SOCS5	9655	genome.wustl.edu	37	2	46986073	46986073	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014011.4	+1	reviewed	p.S135*	1.000	299	0%	118	43.2%	-	-	-	-	-	NULL
SOCS5	9655	genome.wustl.edu	37	2	46986776	46986776	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014011.4	+1	reviewed	p.L369	0.048	143	0%	66	31.8%	-	-	-	-	-	NULL
SOCS5	9655	genome.wustl.edu	37	2	46986991	46986991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014011.4	+1	reviewed	p.A441V	1.000	198	0%	121	35.5%	-	-	benign(0.018)	tolerated(0.26)	neutral(0.035)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
MSH2	4436	genome.wustl.edu	37	2	47690230	47690230	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000251.1	+1	reviewed	p.E483*	1.000	220	0%	97	26.8%	-	-	-	-	-	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
MSH2	4436	genome.wustl.edu	37	2	47698138	47698138	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000251.1	+1	reviewed	p.N566H	1.000	210	0%	72	37.5%	-	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
MSH2	4436	genome.wustl.edu	37	2	47707989	47707989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000251.1	+1	reviewed	p.K871N	1.000	257	0%	150	40%	-	-	benign(0.4)	tolerated(0.38)	neutral(0.146)	NULL
MSH6	2956	genome.wustl.edu	37	2	48026079	48026079	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000179.2	+1	reviewed	p.T319	0.000	121	0.8%	75	32%	-	-	-	-	-	NULL
MSH6	2956	genome.wustl.edu	37	2	48028161	48028161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000179.2	+1	reviewed	p.K1013N	1.000	201	0%	111	31.5%	-	-	benign(0.171)	tolerated(0.41)	neutral(0.030)	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III,HMMPfam_MutS_IV
FOXN2	3344	genome.wustl.edu	37	2	48573431	48573431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002158.3	+1	reviewed	p.Q26H	0.987	153	0%	88	44.3%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48808114	48808114	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172311.1	+1	reviewed	p.L114	0.000	380	0%	215	24.7%	-	-	-	-	-	NULL
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48872174	48872174	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172311.1	+1	reviewed	p.G806	0.771	287	0%	131	35.9%	-	-	-	-	-	HMMPfam_TFIIA
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48873769	48873769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172311.1	+1	reviewed	p.R893I	0.889	246	0%	131	19.8%	-	-	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	HMMPfam_TFIIA
LHCGR	3973	genome.wustl.edu	37	2	48915786	48915786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000233.3	-1	reviewed	p.L384I	0.959	232	0%	127	32.3%	-	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FSHR	2492	genome.wustl.edu	37	2	49190059	49190059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000145.3	-1	reviewed	p.R634H	1.000	418	0%	200	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
FSHR	2492	genome.wustl.edu	37	2	49190434	49190434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000145.3	-1	reviewed	p.S509N	1.000	169	0%	108	49.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NRXN1	9378	genome.wustl.edu	37	2	50779987	50779987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	p.K539N	1.000	498	0%	268	43.3%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_ConA_like_lec_gl
PSME4	23198	genome.wustl.edu	37	2	54154542	54154542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014614.2	-1	validated	p.D528Y	1.000	338	0.3%	160	31.9%	-	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
EML6	400954	genome.wustl.edu	37	2	54952363	54952363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039753.2	+1	validated	p.K55N	1.000	37	0%	21	33.3%	-	-	possibly_damaging(0.916)	tolerated(0.12)	deleterious(0.627)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
MTIF2	4528	genome.wustl.edu	37	2	55471287	55471287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005369.1	-1	reviewed	p.R397C	1.000	503	0%	234	11.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor
CCDC88A	55704	genome.wustl.edu	37	2	55536357	55536357	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456975	-1	known	p.E352*	1.000	190	0%	93	25.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PUS10	150962	genome.wustl.edu	37	2	61235971	61235971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144709.2	-1	validated	p.K102N	0.000	184	0%	97	21.6%	-	-	benign(0.004)	tolerated(0.5)	neutral(0.010)	NULL
C2orf74	339804	genome.wustl.edu	37	2	61391503	61391503	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143959.1	+1	validated	p.Q142	0.000	286	0%	188	42.6%	-	-	-	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61417721	61417721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.L3221I	1.000	251	0%	121	40.5%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
USP34	9736	genome.wustl.edu	37	2	61510304	61510304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.K1658N	0.998	232	0.4%	102	35.3%	-	-	benign(0.122)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61541830	61541830	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.E1144	1.000	408	0%	263	33.1%	-	-	-	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61575221	61575221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.R690Q	1.000	211	0%	147	34.7%	-	-	benign(0.097)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61575499	61575499	+	Silent	SNP	G	G	A	rs139419063	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.H597	1.000	136	0%	141	41.1%	-	-	-	-	-	NULL
XPO1	7514	genome.wustl.edu	37	2	61715367	61715367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003400.3	-1	reviewed	p.R749Q	1.000	214	0%	179	39.7%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_CRM1_C,superfamily_ARM-type_fold
FAM161A	84140	genome.wustl.edu	37	2	62053614	62053614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032180.2	-1	validated	p.E653D	0.008	609	0%	449	36.7%	-	-	unknown(0)	tolerated(0.46)	-	NULL
OTX1	5013	genome.wustl.edu	37	2	63280133	63280133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014562.2	+1	reviewed	p.S3Y	1.000	83	0%	42	38.1%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
WDPCP	51057	genome.wustl.edu	37	2	63712074	63712074	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015910.4	-1	validated	p.R101*	1.000	559	0%	297	41.1%	-	-	-	-	-	NULL
UGP2	7360	genome.wustl.edu	37	2	64084990	64084990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006759.3	+1	reviewed	p.R59W	1.000	263	0%	115	33%	-	-	possibly_damaging(0.755)	tolerated(0.1)	deleterious(0.565)	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases
VPS54	51542	genome.wustl.edu	37	2	64126646	64126646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016516.2	-1	reviewed	p.E899K	1.000	490	0.2%	248	39.5%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
AFTPH	54812	genome.wustl.edu	37	2	64794729	64794729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203437.2	+1	validated	p.E657K	1.000	188	0%	95	29.5%	-	-	possibly_damaging(0.64)	tolerated(0.07)	deleterious(0.543)	NULL
SPRED2	200734	genome.wustl.edu	37	2	65544001	65544001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181784.2	-1	validated	p.S152Y	1.000	444	0%	220	35%	-	-	possibly_damaging(0.508)	tolerated(0.79)	neutral(0.171)	NULL
SPRED2	200734	genome.wustl.edu	37	2	65561754	65561754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181784.2	-1	validated	p.E120K	1.000	313	0.3%	162	26.5%	-	-	possibly_damaging(0.492)	deleterious(0.01)	deleterious(0.570)	superfamily_PH domain-like
PNO1	56902	genome.wustl.edu	37	2	68385653	68385653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020143.2	+1	provisional	p.E117*	1.000	223	0%	116	24.1%	-	-	-	-	-	NULL
PLEK	5341	genome.wustl.edu	37	2	68607531	68607531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002664.2	+1	validated	p.K38N	1.000	152	0%	48	10.4%	-	-	benign(0.099)	tolerated(0.2)	neutral(0.057)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
APLF	200558	genome.wustl.edu	37	2	68765113	68765113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173545.2	+1	validated	p.S305Y	0.008	164	0%	78	37.2%	-	-	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	NULL
ARHGAP25	9938	genome.wustl.edu	37	2	69040538	69040538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007231.2	+1	validated	p.A264V	0.822	221	0%	151	33.8%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP25	9938	genome.wustl.edu	37	2	69049734	69049734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007231.2	+1	validated	p.S487Y	1.000	81	0%	31	48.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GKN2	200504	genome.wustl.edu	37	2	69173563	69173563	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182536.2	-1	provisional	p.Y115	0.851	196	0%	108	38.9%	-	-	-	-	-	HMMPfam_BRICHOS
GFPT1	2673	genome.wustl.edu	37	2	69601212	69601212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002056.2	-1	reviewed	p.R14Q	1.000	174	0%	81	43.2%	-	-	possibly_damaging(0.86)	deleterious(0.03)	deleterious(0.697)	HMMPfam_GATase_2,superfamily_SSF56235
NFU1	27247	genome.wustl.edu	37	2	69659119	69659119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002755.1	-1	validated	p.K27N	0.096	451	0%	219	40.6%	-	-	benign(0.314)	deleterious(0.03)	neutral(0.463)	NULL
SNRNP27	11017	genome.wustl.edu	37	2	70131426	70131426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006857.1	+1	provisional	p.D152N	1.000	493	0%	207	19.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1777
MXD1	4084	genome.wustl.edu	37	2	70143343	70143343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002357.2	+1	reviewed	p.S55I	1.000	384	0%	148	35.1%	-	-	benign(0.037)	tolerated(0.1)	neutral(0.288)	NULL
PCBP1	5093	genome.wustl.edu	37	2	70315022	70315022	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006196.3	+1	reviewed	p.I49	1.000	112	0%	74	33.8%	-	-	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
PCYOX1	51449	genome.wustl.edu	37	2	70504041	70504041	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016297.3	+1	validated	p.T345	1.000	179	0%	104	38.5%	-	-	-	-	-	HMMPfam_Prenylcys_lyase,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain
ADD2	119	genome.wustl.edu	37	2	70923524	70923524	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001617.3	-1	reviewed	p.V109	1.000	211	0%	127	33.9%	-	-	-	-	-	NULL
CLEC4F	165530	genome.wustl.edu	37	2	71043379	71043379	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173535.2	-1	validated	p.V378	0.000	285	0%	184	31.5%	-	-	-	-	-	NULL
ATP6V1B1	525	genome.wustl.edu	37	2	71191988	71191988	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001692.3	+1	reviewed	p.I457	1.000	46	0%	43	34.9%	-	-	-	-	-	NULL
NAGK	55577	genome.wustl.edu	37	2	71297660	71297660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017567.4	+1	validated	p.V20I	1.000	273	0%	169	37.9%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_BcrAD_BadFG,superfamily_SSF53067
NAGK	55577	genome.wustl.edu	37	2	71300688	71300688	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017567.4	+1	validated	p.I181	0.993	238	0%	177	44.1%	-	-	-	-	-	HMMPfam_BcrAD_BadFG,superfamily_SSF53067
ZNF638	27332	genome.wustl.edu	37	2	71591119	71591119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014972.1	+1	reviewed	p.R485Q	1.000	218	0%	115	13%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF638	27332	genome.wustl.edu	37	2	71597123	71597123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014972.1	+1	reviewed	p.K751N	1.000	148	0%	57	28.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_RNA-binding domain RBD
ZNF638	27332	genome.wustl.edu	37	2	71650588	71650588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014972.1	+1	reviewed	p.F1315C	0.070	187	0%	49	28.6%	-	-	possibly_damaging(0.894)	deleterious(0)	deleterious(0.796)	NULL
DYSF	8291	genome.wustl.edu	37	2	71801450	71801450	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130987.1	+1	reviewed	p.E1117	1.000	158	0%	86	22.1%	-	-	-	-	-	HMMSmart_DysFC
DYSF	8291	genome.wustl.edu	37	2	71906225	71906225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130987.1	+1	reviewed	p.A1975T	1.000	349	0%	229	36.2%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_C2,superfamily_C2_CaLB
EXOC6B	23233	genome.wustl.edu	37	2	72722605	72722605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015189.1	-1	validated	p.E503K	1.000	175	0%	67	32.8%	-	-	benign(0.4)	tolerated(0.14)	neutral(0.378)	HMMPfam_Sec15
EXOC6B	23233	genome.wustl.edu	37	2	72722647	72722647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015189.1	-1	validated	p.P489T	1.000	151	0.7%	64	12.5%	-	-	benign(0.358)	deleterious(0.01)	deleterious(0.519)	HMMPfam_Sec15
EXOC6B	23233	genome.wustl.edu	37	2	72786607	72786607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015189.1	-1	validated	p.R297Q	1.000	268	0.4%	78	26.9%	-	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
PRADC1	84279	genome.wustl.edu	37	2	73455965	73455965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032319.1	-1	provisional	p.R135H	1.000	43	0%	45	40%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain
CCT7	10574	genome.wustl.edu	37	2	73471807	73471807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006429.3	+1	reviewed	p.M194I	1.000	243	0%	139	23%	-	-	possibly_damaging(0.837)	deleterious(0.04)	deleterious(0.668)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
EGR4	1961	genome.wustl.edu	37	2	73519378	73519378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001965.3	-1	validated	p.G223E	0.994	48	0%	33	24.2%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73677302	73677302	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.Q1215	0.000	93	0%	63	30.2%	-	-	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73678125	73678125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.P1490S	0.000	170	0%	84	16.7%	-	-	possibly_damaging(0.482)	tolerated(0.06)	deleterious(0.483)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73680137	73680137	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.L2160	0.044	151	0%	102	15.7%	-	-	-	-	-	NULL
NAT8	9027	genome.wustl.edu	37	2	73868752	73868752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003960.3	-1	reviewed	p.A2T	1.000	49	0%	31	29%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	superfamily_Acyl_CoA_acyltransferase
TET3	200424	genome.wustl.edu	37	2	74275514	74275514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144993.1	+1	provisional	p.E689K	1.000	131	0%	75	38.7%	-	-	possibly_damaging(0.506)	deleterious(0.01)	deleterious(0.575)	NULL
DCTN1	1639	genome.wustl.edu	37	2	74601462	74601462	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004082.3	-1	reviewed	p.P140	1.000	240	0%	103	34%	-	-	-	-	-	NULL
RTKN	6242	genome.wustl.edu	37	2	74654712	74654712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015055.1	-1	reviewed	p.R365Q	1.000	168	0%	121	36.4%	-	-	benign(0.141)	tolerated(0.05)	neutral(0.357)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
AUP1	550	genome.wustl.edu	37	2	74754150	74754150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181575.3	-1	reviewed	p.A372T	1.000	168	0%	100	33%	-	-	benign(0.262)	deleterious(0.04)	neutral(0.377)	NULL
SEMA4F	10505	genome.wustl.edu	37	2	74902890	74902890	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004263.3	+1	provisional	p.V499	0.608	216	0%	121	26.4%	-	-	-	-	-	superfamily_Sema domain
REG1B	5968	genome.wustl.edu	37	2	79312369	79312369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006507.3	-1	reviewed	p.F158L	0.019	422	0%	274	34.3%	-	-	unknown(0)	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
REG1B	5968	genome.wustl.edu	37	2	79312539	79312539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454188	-1	known	p.R122K	0.000	124	0%	81	39.5%	-	-	unknown(0)	-	-	NULL
REG3A	5068	genome.wustl.edu	37	2	79385837	79385837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002580.1	-1	reviewed	p.K45N	0.000	570	0%	274	38%	-	-	benign(0.009)	tolerated(0.62)	neutral(0.005)	HMMSmart_SM00034,superfamily_C-type lectin-like
LRRTM1	347730	genome.wustl.edu	37	2	80530146	80530146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178839.4	-1	validated	p.E267K	1.000	130	0%	96	43.8%	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_LRR_1,superfamily_SSF52058
CTNNA2	1496	genome.wustl.edu	37	2	80874923	80874923	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004389.3	+1	validated	p.R882*	0.998	124	0%	70	68.6%	-	-	-	-	-	NULL
SUCLG1	8802	genome.wustl.edu	37	2	84658721	84658721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003849.3	-1	reviewed	p.D246N	1.000	347	0%	176	35.8%	-	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMPfam_Ligase_CoA,superfamily_CoA_ligase
DNAH6	1768	genome.wustl.edu	37	2	84785029	84785029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.K591N	0.835	153	0%	109	34.9%	-	-	benign(0.004)	tolerated(0.49)	neutral(0.011)	NULL
DNAH6	1768	genome.wustl.edu	37	2	84867634	84867634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.E1634D	0.986	187	0%	69	20.3%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH6	1768	genome.wustl.edu	37	2	84897585	84897585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.R2147I	1.000	195	0%	104	34.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH6	1768	genome.wustl.edu	37	2	84930528	84930528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.R2691W	1.000	172	0%	52	44.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH6	1768	genome.wustl.edu	37	2	84932821	84932821	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.R2893*	0.999	325	0%	164	36.6%	-	-	-	-	-	NULL
KCMF1	56888	genome.wustl.edu	37	2	85255047	85255047	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020122.4	+1	validated	p.R18*	1.000	300	0%	148	31.1%	-	-	-	-	-	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1
KCMF1	56888	genome.wustl.edu	37	2	85255079	85255079	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020122.4	+1	validated	p.Y28	1.000	307	0%	164	38.4%	-	-	-	-	-	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1
TCF7L1	83439	genome.wustl.edu	37	2	85529726	85529726	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031283.1	+1	provisional	p.I215	0.803	217	0%	112	44.6%	-	-	-	-	-	HMMPfam_CTNNB1_binding
ELMOD3	84173	genome.wustl.edu	37	2	85598248	85598248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032213.4	+1	validated	p.A134T	0.997	98	1%	91	37.4%	-	-	benign(0.195)	tolerated(0.06)	neutral(0.341)	NULL
SH2D6	284948	genome.wustl.edu	37	2	85663670	85663670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198482.1	+1	provisional	p.E165K	0.025	52	0%	56	14.3%	-	-	benign(0.014)	tolerated(0.33)	neutral(0.025)	superfamily_SH2 domain
GGCX	2677	genome.wustl.edu	37	2	85777112	85777112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000821.4	-1	reviewed	p.S741Y	0.385	149	0%	64	42.2%	-	-	benign(0.427)	deleterious(0)	deleterious(0.584)	NULL
GGCX	2677	genome.wustl.edu	37	2	85777744	85777744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000821.4	-1	reviewed	p.R673Q	1.000	221	0%	108	24.1%	-	-	possibly_damaging(0.949)	deleterious(0.02)	deleterious(0.776)	NULL
GGCX	2677	genome.wustl.edu	37	2	85778720	85778720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000821.4	-1	reviewed	p.E541D	1.000	156	0%	104	38.5%	-	-	possibly_damaging(0.947)	tolerated(0.16)	neutral(0.450)	superfamily_RmlC_like_cupin
ST3GAL5	8869	genome.wustl.edu	37	2	86067399	86067399	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003896.3	-1	reviewed	p.F375	0.950	245	0%	184	34.2%	-	-	-	-	-	HMMPfam_Glyco_transf_29
ST3GAL5	8869	genome.wustl.edu	37	2	86090563	86090563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003896.3	-1	reviewed	p.S43L	0.471	305	0%	187	43.9%	-	-	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
PLGLB1	5343	genome.wustl.edu	37	2	87248885	87248885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032392.2	-1	validated	p.L8F	0.639	469	0%	175	10.3%	-	-	benign(0.078)	tolerated(0.25)	neutral(0.042)	NULL
LINC00152	112597	genome.wustl.edu	37	2	87821006	87821006	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024204.1	+1	validated	NULL	0.111	392	0%	217	27.6%	-	-	-	-	-	-
SMYD1	150572	genome.wustl.edu	37	2	88407889	88407889	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198274.2	+1	provisional	e9-1	1.000	155	0.6%	108	45.4%	-	-	-	-	-	-
FABP1	2168	genome.wustl.edu	37	2	88424027	88424027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001443.1	-1	reviewed	p.D107N	0.999	259	0%	174	37.4%	-	-	benign(0.003)	tolerated(0.67)	neutral(0.003)	HMMPfam_Lipocalin,superfamily_Lipocalins
THNSL2	55258	genome.wustl.edu	37	2	88474234	88474234	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018271.3	+1	validated	p.N100	0.924	363	0%	203	28.6%	-	-	-	-	-	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
EIF2AK3	9451	genome.wustl.edu	37	2	88876187	88876187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004836.5	-1	reviewed	p.K641E	1.000	279	0%	148	42.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ANKRD36BP2	645784	genome.wustl.edu	37	2	89092005	89092005	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_015424.1	+1	predicted	NULL	0.122	504	0%	223	34.1%	-	-	-	-	-	-
LOC100132330	100132330	genome.wustl.edu	37	2	89117847	89117847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719152.1	-1	model	p.L50I	0.936	93	0%	36	27.8%	-	-	-	-	-	HMMPfam_MARVEL
IGKV1-8	28942	genome.wustl.edu	37	2	89292368	89292368	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000495489	-1	known	p.L10	0.831	542	0%	339	40.1%	-	-	-	-	-	NULL
IGKV1-16	28938	genome.wustl.edu	37	2	89399364	89399364	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000479981	-1	known	p.Y113	0.000	818	0%	403	33.3%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV2D-29	28882	genome.wustl.edu	37	2	89986797	89986797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000491977	+1	known	p.Q26H	1.000	182	0%	115	34.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1D-13	28902	genome.wustl.edu	37	2	90193393	90193393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390275	+1	known	p.T107N	0.004	891	0%	404	15.1%	-	-	benign(0.081)	tolerated(0.08)	neutral(0.306)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
ZNF514	84874	genome.wustl.edu	37	2	95815627	95815627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032788.1	-1	provisional	p.K201N	1.000	202	0%	141	26.2%	-	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	superfamily_SSF57667
LOC344065	344065	genome.wustl.edu	37	2	95880756	95880756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_292895.7	+1	model	p.R341Q	1.000	118	0%	83	28.9%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC344065	344065	genome.wustl.edu	37	2	95881263	95881263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_292895.7	+1	model	p.T510N	0.998	48	0%	16	25%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC400986	400986	genome.wustl.edu	37	2	96525670	96525670	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717763.2	-1	model	p.E931*	0.256	1137	0.6%	472	21.2%	-	-	-	-	-	NULL
LOC400986	400986	genome.wustl.edu	37	2	96542246	96542246	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717763.2	-1	model	p.E813*	0.204	778	0%	352	10.2%	-	-	-	-	-	NULL
ENSG00000174501	0	genome.wustl.edu	37	2	96563030	96563030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420871	-1	known	p.K269E	0.001	183	0%	83	39.8%	-	-	possibly_damaging(0.653)	tolerated(0.15)	deleterious(0.471)	NULL
GPAT2	150763	genome.wustl.edu	37	2	96690383	96690383	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207328.2	-1	validated	p.E487	0.995	73	0%	47	42.6%	-	-	-	-	-	NULL
GPAT2	150763	genome.wustl.edu	37	2	96696591	96696591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207328.2	-1	validated	p.R86Q	1.000	127	0%	60	28.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GPAT2	150763	genome.wustl.edu	37	2	96697880	96697880	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207328.2	-1	validated	p.S26	0.998	234	0%	124	23.4%	-	-	-	-	-	NULL
ADRA2B	151	genome.wustl.edu	37	2	96781139	96781139	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409345	-1	known	p.S250	0.001	27	0%	19	42.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ADRA2B	151	genome.wustl.edu	37	2	96781843	96781843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409345	-1	known	p.A16T	1.000	43	0%	32	50%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Family A G protein-coupled receptor-like
SNRNP200	23020	genome.wustl.edu	37	2	96963436	96963436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014014.3	-1	reviewed	p.R381Q	0.998	202	0%	126	22.2%	-	-	benign(0.06)	tolerated(0.37)	neutral(0.023)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LMAN2L	81562	genome.wustl.edu	37	2	97377656	97377656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142292.1	-1	validated	p.R216H	1.000	63	0%	46	43.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
ANKRD23	200539	genome.wustl.edu	37	2	97506638	97506638	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144994.7	-1	reviewed	p.Q104	0.988	94	0%	65	50.8%	-	-	-	-	-	superfamily_Ankyrin repeat
FAM178B	51252	genome.wustl.edu	37	2	97568437	97568437	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122646.2	-1	validated	p.R492*	0.975	66	0%	51	39.2%	-	-	-	-	-	NULL
LOC653924	653924	genome.wustl.edu	37	2	97748159	97748159	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719255.2	+1	model	p.F154V	0.982	90	0%	47	14.9%	-	-	-	-	-	NULL
ANKRD36B	57730	genome.wustl.edu	37	2	98160258	98160258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025190.3	-1	provisional	p.G361E	0.001	434	0.2%	246	20.7%	-	-	-	-	-	NULL
UBTFL6	643615	genome.wustl.edu	37	2	98253876	98253876	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001714896.2	-1	model	p.Y125	1.000	92	0%	55	34.5%	-	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
UBTFL6	643615	genome.wustl.edu	37	2	98254161	98254161	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001714896.2	-1	model	p.E30	0.009	191	0%	91	25.3%	-	-	-	-	-	NULL
TMEM131	23505	genome.wustl.edu	37	2	98429009	98429009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.K580Q	1.000	293	0%	169	42.6%	-	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
TMEM131	23505	genome.wustl.edu	37	2	98431766	98431766	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.S396	1.000	243	0%	89	49.4%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
TMEM131	23505	genome.wustl.edu	37	2	98451349	98451349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.S282G	1.000	373	0%	199	28.6%	-	-	possibly_damaging(0.649)	tolerated(0.2)	neutral(0.277)	NULL
VWA3B	200403	genome.wustl.edu	37	2	98866891	98866891	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144992.4	+1	provisional	p.S928	0.996	484	0%	226	31%	-	-	-	-	-	NULL
VWA3B	200403	genome.wustl.edu	37	2	98887176	98887176	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144992.4	+1	provisional	p.E959*	1.000	149	0%	46	13%	-	-	-	-	-	NULL
CNGA3	1261	genome.wustl.edu	37	2	98994214	98994214	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001298.2	+1	reviewed	p.G56*	0.139	84	0%	26	42.3%	-	-	-	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99695155	99695155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025244.2	-1	validated	p.N283K	0.999	416	0%	209	34.4%	-	-	benign(0)	tolerated(1)	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99695168	99695168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025244.2	-1	validated	p.K279R	1.000	426	0%	207	34.8%	-	-	benign(0.139)	tolerated(0.06)	neutral(0.335)	NULL
LIPT1	51601	genome.wustl.edu	37	2	99778906	99778906	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015929.3	+1	reviewed	p.I162	1.000	221	0.5%	121	35.5%	-	-	-	-	-	HMMPfam_BPL_LipA_LipB
LIPT1	51601	genome.wustl.edu	37	2	99779211	99779211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015929.3	+1	reviewed	p.K264R	0.861	90	0%	57	36.8%	-	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
MRPL30	51263	genome.wustl.edu	37	2	99811340	99811340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145212.2	+1	reviewed	p.K87Q	1.000	164	0%	87	14.9%	-	-	probably_damaging(0.961)	deleterious(0.04)	deleterious(0.753)	superfamily_Ribosomal protein L30p/L7e
EIF5B	9669	genome.wustl.edu	37	2	99978050	99978050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015904.3	+1	reviewed	p.A229D	1.000	248	0%	66	19.7%	-	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
EIF5B	9669	genome.wustl.edu	37	2	100011204	100011204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015904.3	+1	reviewed	p.D1038N	1.000	572	0%	283	30.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Initiation factor IF2/eIF5b domain 3
AFF3	3899	genome.wustl.edu	37	2	100623902	100623902	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025108.1	-1	reviewed	p.L90	1.000	150	0.7%	84	44%	-	-	-	-	-	HMMPfam_AF-4
LONRF2	164832	genome.wustl.edu	37	2	100903382	100903382	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198461.3	-1	validated	p.E688	1.000	184	0%	131	24.4%	-	-	-	-	-	HMMPfam_LON,HMMSmart_SM00464
NMS	129521	genome.wustl.edu	37	2	101093870	101093870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011717.1	+1	provisional	p.K85N	0.008	319	0%	179	45.3%	-	-	benign(0.01)	tolerated(0.29)	neutral(0.030)	NULL
PDCL3	79031	genome.wustl.edu	37	2	101186103	101186103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024065.4	+1	validated	p.E96D	1.000	230	0%	150	18.7%	-	-	benign(0.1)	tolerated(0.1)	neutral(0.294)	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd
NPAS2	4862	genome.wustl.edu	37	2	101564773	101564773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002518.3	+1	reviewed	p.S147F	1.000	444	0%	191	42.4%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785
TBC1D8	11138	genome.wustl.edu	37	2	101638770	101638770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102426.1	-1	validated	p.E897K	0.352	187	0%	124	34.7%	-	-	benign(0.032)	deleterious(0.04)	neutral(0.350)	superfamily_EF-hand
TBC1D8	11138	genome.wustl.edu	37	2	101638971	101638971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102426.1	-1	validated	p.M830V	0.993	69	0%	56	48.2%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	superfamily_EF-hand
TBC1D8	11138	genome.wustl.edu	37	2	101670715	101670715	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102426.1	-1	validated	p.F147	0.969	117	0%	109	23.9%	-	-	-	-	-	HMMPfam_GRAM,HMMSmart_SM00568
CREG2	200407	genome.wustl.edu	37	2	102000090	102000090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153836.3	-1	validated	p.F172L	1.000	277	0%	133	32.3%	-	-	probably_damaging(0.98)	deleterious(0.05)	deleterious(0.769)	superfamily_FMN_binding
IL1R1	3554	genome.wustl.edu	37	2	102782726	102782726	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000877.2	+1	reviewed	p.E214*	0.002	242	0%	115	17.4%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
IL1RL2	8808	genome.wustl.edu	37	2	102836423	102836423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003854.2	+1	reviewed	p.P313T	0.015	282	0%	155	41.9%	-	-	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	superfamily_SSF48726
IL1RL1	9173	genome.wustl.edu	37	2	102959741	102959741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016232.4	+1	reviewed	p.G279E	0.000	319	0%	186	36.6%	-	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMSmart_SM00409,superfamily_Immunoglobulin
TMEM182	130827	genome.wustl.edu	37	2	103380807	103380807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144632.3	+1	validated	p.K84N	1.000	134	0%	70	31.4%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
POU3F3	5455	genome.wustl.edu	37	2	105473018	105473018	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006236.1	+1	provisional	p.L350	1.000	55	0%	32	28.1%	-	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
POU3F3	5455	genome.wustl.edu	37	2	105473057	105473057	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006236.1	+1	provisional	p.F363	1.000	56	0%	45	40%	-	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_2,superfamily_Lambda_like_DNA
TGFBRAP1	9392	genome.wustl.edu	37	2	105890101	105890101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142621.1	-1	validated	p.K571R	0.198	780	0%	400	37%	-	-	benign(0.01)	tolerated(0.56)	neutral(0.007)	NULL
NCK2	8440	genome.wustl.edu	37	2	106471537	106471537	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004720.2	+1	reviewed	p.I6M	1.000	160	0%	69	33.3%	-	-	benign(0.22)	deleterious(0.01)	neutral(0.427)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
C2orf40	84417	genome.wustl.edu	37	2	106690494	106690494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032411.2	+1	validated	p.E94K	1.000	67	0%	57	33.3%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107049441	107049441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.D807Y	1.000	1032	0%	449	21.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107049638	107049638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.R770Q	0.818	608	0.2%	297	31.3%	-	-	possibly_damaging(0.897)	tolerated(0.44)	neutral(0.366)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107084711	107084711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.V12I	0.998	72	0%	69	36.2%	-	-	benign(0.069)	tolerated(0.18)	neutral(0.060)	NULL
ST6GAL2	84620	genome.wustl.edu	37	2	107460350	107460350	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142351.1	-1	validated	p.I28	1.000	75	1.3%	34	14.7%	-	-	-	-	-	NULL
RGPD4	285190	genome.wustl.edu	37	2	108473256	108473256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182588.2	+1	validated	p.F369L	1.000	1102	0%	588	22.6%	-	-	benign(0.009)	tolerated(0.9)	neutral(0.001)	NULL
SLC5A7	60482	genome.wustl.edu	37	2	108627311	108627311	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021815.2	+1	provisional	p.L579	0.001	39	0%	22	31.8%	-	-	-	-	-	NULL
SULT1C4	27233	genome.wustl.edu	37	2	109002779	109002779	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006588.2	+1	reviewed	p.S249	0.000	172	0%	100	35%	-	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
GCC2	9648	genome.wustl.edu	37	2	109087305	109087305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.S507L	1.000	33	0%	18	33.3%	-	-	possibly_damaging(0.868)	-	-	NULL
GCC2	9648	genome.wustl.edu	37	2	109087535	109087535	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.E584*	1.000	48	0%	21	33.3%	-	-	-	-	-	NULL
GCC2	9648	genome.wustl.edu	37	2	109088117	109088117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.D778Y	0.997	94	0%	45	35.6%	-	-	probably_damaging(1)	-	-	NULL
GCC2	9648	genome.wustl.edu	37	2	109088187	109088187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.A801V	0.000	144	0%	67	26.9%	-	-	benign(0)	-	-	NULL
GCC2	9648	genome.wustl.edu	37	2	109100665	109100665	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.E1171*	1.000	198	0.5%	68	42.6%	-	-	-	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109365442	109365442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.A377V	1.000	991	0%	574	23.2%	-	-	unknown(0)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109370332	109370332	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.E703*	1.000	1386	0.1%	775	36.5%	-	-	-	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109371418	109371418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.E754K	1.000	775	0%	377	33.2%	-	-	unknown(0)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109380662	109380662	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.R1223	0.994	110	0%	81	32.1%	-	-	-	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RANBP2	5903	genome.wustl.edu	37	2	109382289	109382289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.S1765L	0.674	528	0%	237	24.5%	-	-	benign(0.29)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109384260	109384260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.R2422H	0.992	85	0%	44	22.7%	-	-	probably_damaging(1)	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RANBP2	5903	genome.wustl.edu	37	2	109384751	109384751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.E2586K	0.000	150	0.7%	108	35.2%	-	-	benign(0)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109399276	109399276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.K3109N	1.000	134	0%	74	39.2%	-	-	probably_damaging(0.997)	-	-	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_CSA_PPIase
EDAR	10913	genome.wustl.edu	37	2	109546648	109546648	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022336.3	-1	reviewed	p.N34	0.937	105	0%	57	33.3%	-	-	-	-	-	NULL
SH3RF3	344558	genome.wustl.edu	37	2	110107342	110107342	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000309415	+1	known	p.P810	0.000	54	1.9%	28	28.6%	-	-	-	-	-	superfamily_SH3
SEPT10	151011	genome.wustl.edu	37	2	110323348	110323348	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144710.2	-1	reviewed	p.V284G	0.978	629	0%	388	34.3%	-	-	possibly_damaging(0.527)	deleterious(0)	deleterious(0.623)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
MALL	7851	genome.wustl.edu	37	2	110849208	110849208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005434.4	-1	validated	p.Y82C	1.000	339	0%	147	17%	-	-	probably_damaging(0.995)	tolerated(0.15)	deleterious(0.699)	HMMPfam_MARVEL
ACOXL	55289	genome.wustl.edu	37	2	111551655	111551655	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142807.1	+1	validated	p.E83	1.000	168	0%	86	39.5%	-	-	-	-	-	superfamily_Acyl-CoA dehydrogenase NM domain-like
BCL2L11	10018	genome.wustl.edu	37	2	111921749	111921749	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138621.3	+1	reviewed	p.R180*	1.000	298	0%	180	31.7%	-	-	-	-	-	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112536329	112536329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022662.2	-1	validated	p.L1770I	1.000	325	0%	183	21.9%	-	-	benign(0.418)	tolerated(0.31)	neutral(0.163)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112578836	112578836	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427997	-1	known	p.H597Y	1.000	370	0%	242	31.8%	-	-	-	-	-	NULL
MERTK	10461	genome.wustl.edu	37	2	112732972	112732972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006343.2	+1	reviewed	p.S356I	0.993	235	0%	176	41.5%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TMEM87B	84910	genome.wustl.edu	37	2	112834807	112834807	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452614	+1	known	p.L121I	1.000	227	0%	81	33.3%	-	-	-	-	-	HMMPfam_Lung_7-TM_R
TMEM87B	84910	genome.wustl.edu	37	2	112838942	112838942	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032824.2	+1	validated	p.L229V	1.000	418	0%	232	37.9%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Lung_7-TM_R
ZC3H6	376940	genome.wustl.edu	37	2	113089972	113089972	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198581.2	+1	validated	p.P1159	0.002	46	0%	18	22.2%	-	-	-	-	-	superfamily_Multiheme cytochromes
RGPD8	727851	genome.wustl.edu	37	2	113161620	113161620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302558	-1	known	p.S400Y	0.847	955	0%	521	16.1%	-	-	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	NULL
RGPD8	727851	genome.wustl.edu	37	2	113181819	113181819	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302558	-1	known	p.K46N	1.000	345	0%	141	24.1%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_TPR-like
POLR1B	84172	genome.wustl.edu	37	2	113332676	113332676	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019014.4	+1	validated	p.I926	0.933	241	0%	163	33.7%	-	-	-	-	-	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1B	84172	genome.wustl.edu	37	2	113333092	113333092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019014.4	+1	validated	p.S1065L	0.991	342	0.3%	178	29.8%	-	-	probably_damaging(0.955)	tolerated(0.64)	neutral(0.402)	HMMPfam_RNA_pol_Rpb2_7,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
PSD4	23550	genome.wustl.edu	37	2	113958972	113958972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012455.2	+1	validated	p.R1051W	0.998	76	0%	59	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000251207	0	genome.wustl.edu	37	2	114416099	114416099	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514936	-1	novel	NULL	1.000	380	0%	239	45.2%	-	-	-	-	-	-
DPP10	57628	genome.wustl.edu	37	2	116101408	116101408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020868.3	+1	validated	p.S64L	1.000	276	0.7%	130	38.5%	-	-	benign(0.335)	tolerated(0.21)	neutral(0.149)	NULL
DPP10	57628	genome.wustl.edu	37	2	116525907	116525907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020868.3	+1	validated	p.K383T	0.997	533	0%	261	31.4%	-	-	benign(0.078)	tolerated(0.1)	neutral(0.292)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP10	57628	genome.wustl.edu	37	2	116539961	116539961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020868.3	+1	validated	p.T506M	0.508	358	0%	116	35.3%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DDX18	8886	genome.wustl.edu	37	2	118579617	118579617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006773.3	+1	reviewed	p.R311C	1.000	294	0%	209	42.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
PCDP1	200373	genome.wustl.edu	37	2	120388454	120388454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029996.3	+1	validated	p.D365Y	0.001	378	0%	212	33.5%	-	-	probably_damaging(0.955)	deleterious(0.04)	deleterious(0.748)	NULL
EPB41L5	57669	genome.wustl.edu	37	2	120889270	120889270	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020909.3	+1	validated	p.I526	0.001	158	0%	62	37.1%	-	-	-	-	-	NULL
CLASP1	23332	genome.wustl.edu	37	2	122120867	122120867	+	Nonsense_Mutation	SNP	G	G	A	rs145127425	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015282.2	-1	validated	p.R1363*	1.000	313	0%	174	25.9%	-	-	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
CLASP1	23332	genome.wustl.edu	37	2	122125212	122125212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015282.2	-1	validated	p.A1280T	1.000	326	0.3%	178	29.2%	-	-	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	superfamily_ARM repeat
CLASP1	23332	genome.wustl.edu	37	2	122165076	122165076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442289	-1	known	p.E227*	1.000	229	0%	173	34.1%	-	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	124979315	124979315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.S39Y	0.967	400	0%	218	44%	-	-	possibly_damaging(0.893)	tolerated(0.25)	neutral(0.389)	HMMSmart_FA58C,superfamily_Gal_bind_like
CNTNAP5	129684	genome.wustl.edu	37	2	125504945	125504945	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.D738	0.937	216	0.5%	106	34%	-	-	-	-	-	superfamily_ConA_like_lec_gl
CNTNAP5	129684	genome.wustl.edu	37	2	125660669	125660669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.S1215Y	1.000	138	0%	102	36.3%	-	-	benign(0.054)	tolerated(0.16)	neutral(0.063)	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	125669091	125669091	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.R1234*	0.924	321	0%	189	42.9%	-	-	-	-	-	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	125671807	125671807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.R1288I	1.000	314	0%	181	37%	-	-	possibly_damaging(0.893)	tolerated(0.05)	deleterious(0.698)	NULL
CYP27C1	339761	genome.wustl.edu	37	2	127956957	127956957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001665.3	-1	reviewed	p.D183N	0.999	187	0%	154	42.9%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_p450,superfamily_Cytochrome P450
ERCC3	2071	genome.wustl.edu	37	2	128038196	128038196	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000122.1	-1	reviewed	p.R452*	1.000	100	0%	70	34.3%	-	-	-	-	-	HMMPfam_ResIII,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PROC	5624	genome.wustl.edu	37	2	128180683	128180683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453608	+1	known	p.S164L	0.999	3	0.000	9	0.444	-	-	unknown(0)	deleterious(0)	-	NULL
PROC	5624	genome.wustl.edu	37	2	128186455	128186455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000312.3	+1	reviewed	p.R440H	0.996	69	0%	36	36.1%	-	-	benign(0.029)	deleterious(0.04)	neutral(0.350)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
IWS1	55677	genome.wustl.edu	37	2	128247423	128247423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017969.2	-1	validated	p.R715Q	1.000	969	0%	526	37.6%	-	-	possibly_damaging(0.723)	tolerated(0.11)	deleterious(0.534)	HMMPfam_IWS1_C
MYO7B	4648	genome.wustl.edu	37	2	128331574	128331574	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.S224	0.035	139	0%	96	49%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7B	4648	genome.wustl.edu	37	2	128338331	128338331	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.F338	0.609	114	0%	90	36.7%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7B	4648	genome.wustl.edu	37	2	128339543	128339543	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.L386	1.000	178	0%	109	43.1%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR33	55339	genome.wustl.edu	37	2	128482480	128482480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018383.3	-1	reviewed	p.L356V	1.000	226	0%	97	40.2%	-	-	unknown(0)	tolerated(0.06)	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SAP130	79595	genome.wustl.edu	37	2	128750852	128750852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024545.3	-1	validated	p.F488L	0.946	360	0%	166	39.2%	-	-	probably_damaging(0.987)	tolerated(0.14)	deleterious(0.686)	NULL
POTEF	728378	genome.wustl.edu	37	2	130872453	130872453	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099771.2	-1	validated	e3+1	0.995	869	0.2%	543	21.4%	-	-	-	-	-	-
POTEF	728378	genome.wustl.edu	37	2	130872460	130872460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099771.2	-1	validated	p.K268N	0.996	909	0%	568	23.4%	-	-	benign(0.184)	deleterious(0.01)	neutral(0.423)	HMMPfam_Ank,superfamily_ANK
TUBA3E	112714	genome.wustl.edu	37	2	130949415	130949415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207312.2	-1	validated	p.E448K	1.000	520	0%	279	30.1%	-	-	benign(0.01)	deleterious(0)	neutral(0.445)	NULL
PTPN18	26469	genome.wustl.edu	37	2	131128488	131128488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014369.3	+1	reviewed	p.F292S	0.996	170	0%	112	48.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PTPc,superfamily_SSF52799
GPR148	344561	genome.wustl.edu	37	2	131487759	131487759	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207364.2	+1	validated	p.T345	0.022	48	0%	26	26.9%	-	-	-	-	-	NULL
FAM123C	205147	genome.wustl.edu	37	2	131520782	131520782	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105193.1	+1	validated	p.S379	0.000	74	0%	38	55.3%	-	-	-	-	-	HMMPfam_WTX
ARHGEF4	50649	genome.wustl.edu	37	2	131704211	131704211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409359	+1	known	p.E1000K	0.999	155	0%	92	35.9%	-	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
FAM168B	130074	genome.wustl.edu	37	2	131812883	131812883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009993.2	-1	validated	p.M146T	1.000	173	0%	136	33.8%	-	-	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
PLEKHB2	55041	genome.wustl.edu	37	2	131904260	131904260	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100623.1	+1	validated	p.R195*	0.630	170	0.6%	121	14.9%	-	-	-	-	-	NULL
POTEE	445582	genome.wustl.edu	37	2	131976387	131976387	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083538.1	+1	validated	p.E138*	0.001	497	0%	308	13.6%	-	-	-	-	-	superfamily_Ankyrin repeat
POTEE	445582	genome.wustl.edu	37	2	131984493	131984493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083538.1	+1	validated	p.R303I	0.001	822	0%	389	23.1%	-	-	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	HMMPfam_Ank,superfamily_Ankyrin repeat
POTEE	445582	genome.wustl.edu	37	2	132021086	132021086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083538.1	+1	validated	p.K686N	0.221	259	0%	119	33.6%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
TUBA3D	113457	genome.wustl.edu	37	2	132238026	132238026	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080386.2	+1	validated	p.E254Q	1.000	381	0.3%	254	30.3%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
CCDC74A	90557	genome.wustl.edu	37	2	132287065	132287065	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434330	+1	known	p.G27	0.000	104	0%	63	44.4%	-	-	-	-	-	NULL
GPR39	2863	genome.wustl.edu	37	2	133402721	133402721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001508.2	+1	validated	p.R302W	1.000	118	0%	89	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR39	2863	genome.wustl.edu	37	2	133402871	133402871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001508.2	+1	validated	p.R352W	1.000	90	0%	87	31%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
LYPD1	116372	genome.wustl.edu	37	2	133403714	133403714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144586.5	-1	validated	p.R110S	1.000	157	0%	87	40.2%	-	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	NULL
YSK4	80122	genome.wustl.edu	37	2	135743904	135743904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.Q846H	0.944	355	0%	260	13.8%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
YSK4	80122	genome.wustl.edu	37	2	135744298	135744298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.R715I	0.146	172	0%	103	39.8%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
YSK4	80122	genome.wustl.edu	37	2	135744687	135744687	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.W585*	0.000	244	0%	133	35.3%	-	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135745215	135745215	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.E409	0.000	328	0%	157	39.5%	-	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135763096	135763096	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.F48	0.993	207	0%	117	35.9%	-	-	-	-	-	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135911423	135911423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012233.2	+1	reviewed	p.D756N	1.000	265	0.4%	131	36.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZRANB3	84083	genome.wustl.edu	37	2	136111183	136111183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032143.2	-1	provisional	p.T66A	1.000	149	0%	81	14.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
LCT	3938	genome.wustl.edu	37	2	136566726	136566726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.N1064T	1.000	83	0%	51	19.6%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136575259	136575259	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.F453	1.000	44	0%	41	19.5%	-	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
THSD7B	80731	genome.wustl.edu	37	2	137814631	137814631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080427.1	+1	provisional	p.P230T	0.012	217	0%	126	33.3%	-	-	benign(0.143)	tolerated(0.6)	neutral(0.017)	NULL
LOC440917	440917	genome.wustl.edu	37	2	139046280	139046280	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041289.2	-1	model	NULL	1.000	343	0%	195	36.4%	-	-	-	-	-	-
NXPH2	11249	genome.wustl.edu	37	2	139428905	139428905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007226.2	-1	validated	p.L128F	1.000	247	0%	152	38.2%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Neurexophilin
LRP1B	53353	genome.wustl.edu	37	2	140992404	140992404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.A4537V	1.000	475	0.2%	171	32.7%	-	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
LRP1B	53353	genome.wustl.edu	37	2	141128794	141128794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.S3610Y	1.000	102	0%	44	36.4%	-	-	probably_damaging(0.961)	tolerated(0.05)	deleterious(0.750)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141253234	141253234	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.C2978	1.000	471	0%	213	16.9%	-	-	-	-	-	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141259444	141259444	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	e55-1	1.000	155	0%	92	37%	-	-	-	-	-	-
LRP1B	53353	genome.wustl.edu	37	2	141571368	141571368	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.S1739	0.019	270	0%	171	30.4%	-	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141607771	141607771	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.F1613	0.570	472	0%	271	29.2%	-	-	-	-	-	HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141609354	141609354	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	e28-2	1.000	144	0%	89	33.7%	-	-	-	-	-	-
LRP1B	53353	genome.wustl.edu	37	2	141660686	141660686	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.V1190G	1.000	229	0%	148	39.2%	-	-	possibly_damaging(0.712)	tolerated(0.51)	neutral(0.267)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
LRP1B	53353	genome.wustl.edu	37	2	141751606	141751606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.D868N	0.999	317	0%	141	41.8%	-	-	possibly_damaging(0.88)	tolerated(0.53)	neutral(0.351)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
ZEB2	9839	genome.wustl.edu	37	2	145157079	145157079	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.L559	0.973	463	0%	235	28.1%	-	-	-	-	-	NULL
ZEB2	9839	genome.wustl.edu	37	2	145187366	145187366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.E101K	0.998	118	0%	111	38.7%	-	-	benign(0.032)	tolerated(0.15)	neutral(0.242)	NULL
ORC4	5000	genome.wustl.edu	37	2	148733507	148733507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002552.2	-1	reviewed	p.K7N	0.901	259	0%	119	32.8%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
MBD5	55777	genome.wustl.edu	37	2	149226593	149226593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018328.4	+1	reviewed	p.L361F	1.000	245	0%	125	27.2%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MBD5	55777	genome.wustl.edu	37	2	149247560	149247560	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018328.4	+1	reviewed	p.G1220	1.000	162	0%	87	39.1%	-	-	-	-	-	NULL
EPC2	26122	genome.wustl.edu	37	2	149522569	149522569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015630.3	+1	validated	p.R332C	1.000	187	0%	118	42.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPC2	26122	genome.wustl.edu	37	2	149522621	149522621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015630.3	+1	validated	p.S349F	1.000	193	0.5%	97	37.1%	-	-	benign(0.046)	deleterious(0.03)	neutral(0.367)	NULL
KIF5C	3800	genome.wustl.edu	37	2	149679726	149679726	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435030	+1	known	p.F49	0.927	349	0%	197	32.5%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF5C	3800	genome.wustl.edu	37	2	149793866	149793866	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435030	+1	known	p.I120	1.000	132	0%	81	44.4%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF5C	3800	genome.wustl.edu	37	2	149806383	149806383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435030	+1	known	p.L249I	1.000	498	0%	220	35%	-	-	possibly_damaging(0.52)	deleterious(0)	deleterious(0.619)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
LYPD6B	130576	genome.wustl.edu	37	2	150017338	150017338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177964.3	+1	provisional	p.F22L	0.000	309	0.3%	154	42.9%	-	-	unknown(0)	-	-	NULL
LYPD6	130574	genome.wustl.edu	37	2	150327246	150327246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194317.2	+1	provisional	p.R133Q	1.000	528	0%	298	40.9%	-	-	probably_damaging(0.985)	tolerated(0.15)	deleterious(0.673)	NULL
RBM43	375287	genome.wustl.edu	37	2	152107691	152107691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198557.2	-1	validated	p.S268Y	0.001	275	0%	142	42.3%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
RIF1	55183	genome.wustl.edu	37	2	152285410	152285410	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.L300*	1.000	267	0%	144	34.7%	-	-	-	-	-	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152359308	152359308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.S6275L	1.000	266	0%	110	35.5%	-	-	probably_damaging(0.959)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152361993	152361993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.S6213L	1.000	370	0%	270	24.1%	-	-	probably_damaging(0.995)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152404880	152404880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.L4999P	1.000	350	0%	152	36.8%	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152450707	152450707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427231	-1	known	p.K68N	1.000	1097	0.1%	679	13.1%	-	-	unknown(0)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152473983	152473983	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	e70-1	1.000	94	0%	67	40.3%	-	-	-	-	-	-
NEB	4703	genome.wustl.edu	37	2	152484118	152484118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.K3111N	0.997	471	0%	324	34.3%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152500984	152500984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.E2548*	1.000	468	0%	232	40.1%	-	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152502667	152502667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.A2505T	1.000	484	0%	215	15.3%	-	-	benign(0.004)	tolerated(0.6)	neutral(0.004)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152512853	152512853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.K2103N	1.000	678	0%	392	33.4%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152548867	152548867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.K636E	1.000	687	0%	371	35.3%	-	-	possibly_damaging(0.604)	deleterious(0.02)	deleterious(0.593)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152550850	152550850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.K628R	1.000	582	0%	363	39.9%	-	-	probably_damaging(0.994)	tolerated(0.3)	deleterious(0.481)	HMMPfam_Nebulin,HMMSmart_SM00227
CACNB4	785	genome.wustl.edu	37	2	152725742	152725742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000726.3	-1	reviewed	p.D236G	1.000	407	0%	172	31.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
FMNL2	114793	genome.wustl.edu	37	2	153471382	153471382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052905.3	+1	reviewed	p.E360D	1.000	157	0%	87	21.8%	-	-	possibly_damaging(0.491)	deleterious(0.02)	deleterious(0.546)	HMMPfam_Drf_FH3
FMNL2	114793	genome.wustl.edu	37	2	153481980	153481980	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421344	+1	known	p.R160Q	0.218	391	0%	218	38.5%	-	-	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
GALNT13	114805	genome.wustl.edu	37	2	155115637	155115637	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052917.2	+1	validated	p.E321*	1.000	468	0%	198	36.9%	-	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
GALNT13	114805	genome.wustl.edu	37	2	155252589	155252589	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052917.2	+1	validated	p.E415*	1.000	308	0%	108	12%	-	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
NR4A2	4929	genome.wustl.edu	37	2	157184401	157184401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006186.3	-1	reviewed	p.D374N	1.000	92	0%	66	34.8%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Nuclear receptor ligand-binding domain
GPD2	2820	genome.wustl.edu	37	2	157435477	157435477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000408.4	+1	reviewed	p.R615H	0.993	376	0%	201	38.8%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_FAD/NAD(P)-binding domain
GALNT5	11227	genome.wustl.edu	37	2	158153005	158153005	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014568.1	+1	provisional	p.I659	0.766	418	0%	213	35.2%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
ACVR1C	130399	genome.wustl.edu	37	2	158397649	158397649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145259.2	-1	validated	p.S393Y	1.000	400	0%	141	43.3%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CCDC148	130940	genome.wustl.edu	37	2	159033064	159033064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138803.3	-1	validated	p.L533P	1.000	395	0%	207	34.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC148	130940	genome.wustl.edu	37	2	159166098	159166098	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138803.3	-1	validated	p.N319	0.000	411	0%	237	36.7%	-	-	-	-	-	NULL
CCDC148	130940	genome.wustl.edu	37	2	159197138	159197138	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138803.3	-1	validated	p.N102K	0.967	190	0%	96	25%	-	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
PKP4	8502	genome.wustl.edu	37	2	159514693	159514693	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.R654*	1.000	534	0%	298	24.2%	-	-	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
PKP4	8502	genome.wustl.edu	37	2	159530191	159530191	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.S976*	1.000	355	0%	181	32.6%	-	-	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
TANC1	85461	genome.wustl.edu	37	2	160005675	160005675	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033394.2	+1	validated	p.P129	1.000	257	0%	133	35.3%	-	-	-	-	-	NULL
TANC1	85461	genome.wustl.edu	37	2	160031569	160031569	+	Missense_Mutation	SNP	G	G	A	rs190179338	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033394.2	+1	validated	p.A537T	1.000	129	0%	91	35.2%	-	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
WDSUB1	151525	genome.wustl.edu	37	2	160104954	160104954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128212.1	-1	validated	p.S401Y	1.000	265	0%	162	37%	-	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	superfamily_RING/U-box
MARCH7	64844	genome.wustl.edu	37	2	160623840	160623840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022826.2	+1	validated	p.F701C	1.000	436	0%	213	35.2%	-	-	benign(0.039)	-	-	NULL
PLA2R1	22925	genome.wustl.edu	37	2	160798366	160798366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.Y1439H	0.857	189	0%	102	46.1%	-	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
PLA2R1	22925	genome.wustl.edu	37	2	160840477	160840477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.E715D	1.000	89	0%	40	47.5%	-	-	probably_damaging(0.999)	tolerated(0.49)	deleterious(0.501)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160840542	160840542	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.E694*	1.000	116	0%	65	30.8%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TANK	10010	genome.wustl.edu	37	2	162036166	162036166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402568	+1	known	p.R56Q	0.926	270	0%	127	40.2%	-	-	benign(0.004)	tolerated(0.6)	neutral(0.004)	NULL
PSMD14	10213	genome.wustl.edu	37	2	162251667	162251667	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005805.4	+1	validated	p.E242*	1.000	303	0%	107	39.3%	-	-	-	-	-	NULL
TBR1	10716	genome.wustl.edu	37	2	162273317	162273317	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006593.2	+1	reviewed	p.P132	0.959	35	0%	19	42.1%	-	-	-	-	-	NULL
TBR1	10716	genome.wustl.edu	37	2	162275552	162275552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006593.2	+1	reviewed	p.Q373H	1.000	59	0%	46	47.8%	-	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
DPP4	1803	genome.wustl.edu	37	2	162849816	162849816	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001935.3	-1	reviewed	p.K760Q	0.996	958	0%	432	33.1%	-	-	benign(0.026)	tolerated(0.16)	neutral(0.060)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
DPP4	1803	genome.wustl.edu	37	2	162881402	162881402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001935.3	-1	reviewed	p.S312Y	0.421	212	0%	120	31.7%	-	-	benign(0.104)	tolerated(0.22)	neutral(0.050)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
GCG	2641	genome.wustl.edu	37	2	163005681	163005681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002054.3	-1	reviewed	p.S3I	1.000	234	0%	133	31.6%	-	-	benign(0.223)	deleterious(0.02)	neutral(0.405)	NULL
FAP	2191	genome.wustl.edu	37	2	163039968	163039968	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004460.2	-1	reviewed	p.E609*	1.000	225	0%	84	47.6%	-	-	-	-	-	HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER,superfamily_SSF53474
KCNH7	90134	genome.wustl.edu	37	2	163230141	163230141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033272.2	-1	reviewed	p.T1055P	0.999	446	0.2%	236	32.2%	-	-	possibly_damaging(0.608)	tolerated(0.05)	deleterious(0.556)	NULL
KCNH7	90134	genome.wustl.edu	37	2	163236516	163236516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033272.2	-1	reviewed	p.R993Q	0.029	341	0%	193	33.2%	-	-	possibly_damaging(0.792)	tolerated(0.3)	neutral(0.326)	NULL
KCNH7	90134	genome.wustl.edu	37	2	163241446	163241446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033272.2	-1	reviewed	p.N905S	0.180	339	0%	207	38.6%	-	-	benign(0)	tolerated(0.88)	-	NULL
KCNH7	90134	genome.wustl.edu	37	2	163302727	163302727	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033272.2	-1	reviewed	p.N452T	1.000	229	0%	124	11.3%	-	-	benign(0.011)	tolerated(0.63)	neutral(0.004)	superfamily_Voltage-gated potassium channels
FIGN	55137	genome.wustl.edu	37	2	164467623	164467623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018086.2	-1	validated	p.S240F	1.000	207	0%	125	41.6%	-	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
GRB14	2888	genome.wustl.edu	37	2	165404231	165404231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004490.2	-1	reviewed	p.K140N	1.000	135	0%	58	43.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RA,HMMSmart_RA
SCN3A	6328	genome.wustl.edu	37	2	165947398	165947398	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.I1755	1.000	684	0%	304	37.2%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165986652	165986652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.S907N	1.000	548	0%	278	16.2%	-	-	benign(0.306)	tolerated(1)	neutral(0.096)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165994569	165994569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.F737L	0.989	311	0%	158	34.2%	-	-	benign(0.106)	tolerated(0.07)	neutral(0.327)	superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166170459	166170459	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.V408	0.998	261	0%	125	34.4%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166211138	166211138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.T1119N	1.000	187	0%	97	29.9%	-	-	probably_damaging(0.995)	tolerated(0.41)	deleterious(0.473)	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166229829	166229829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.R1315I	1.000	509	0%	212	34%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CSRNP3	80034	genome.wustl.edu	37	2	166535298	166535298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024969.3	+1	validated	p.R265W	1.000	300	0%	128	41.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSRNP3	80034	genome.wustl.edu	37	2	166535445	166535445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024969.3	+1	validated	p.A314T	0.824	147	0%	83	10.8%	-	-	possibly_damaging(0.477)	deleterious(0.04)	deleterious(0.506)	NULL
CSRNP3	80034	genome.wustl.edu	37	2	166536097	166536097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024969.3	+1	validated	p.F531C	1.000	161	0%	104	32.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GALNT3	2591	genome.wustl.edu	37	2	166618396	166618396	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409882	-1	known	p.G3	0.002	273	0%	146	34.2%	-	-	-	-	-	NULL
GALNT3	2591	genome.wustl.edu	37	2	166627114	166627114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004482.3	-1	reviewed	p.V33F	0.997	85	0%	58	37.9%	-	-	benign(0)	tolerated(1)	-	NULL
TTC21B	79809	genome.wustl.edu	37	2	166747104	166747104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024753.3	-1	validated	p.R1050W	0.999	314	0%	124	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00028,superfamily_TPR-like
SCN1A	6323	genome.wustl.edu	37	2	166892676	166892676	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.S1093*	1.000	581	0%	343	37%	-	-	-	-	-	HMMPfam_Na_trans_assoc,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166900452	166900452	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.F590	1.000	298	0%	151	34.4%	-	-	-	-	-	NULL
SCN1A	6323	genome.wustl.edu	37	2	166900489	166900489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.R578I	1.000	206	0%	100	31%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SCN9A	6335	genome.wustl.edu	37	2	167056119	167056119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.D1666G	1.000	708	0%	427	39.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167298010	167298010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002976.2	-1	validated	p.L685F	0.999	262	0%	146	27.4%	-	-	possibly_damaging(0.678)	deleterious(0)	deleterious(0.686)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167298130	167298130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002976.2	-1	validated	p.G645S	1.000	298	0%	160	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	167992565	167992565	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.I185	0.067	196	0%	100	30%	-	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168100464	168100464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.K854N	1.000	110	0%	43	23.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168102109	168102109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.S1403A	0.000	132	0%	74	35.1%	-	-	probably_damaging(0.977)	tolerated(0.35)	neutral(0.440)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168107654	168107654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.S3251F	0.363	80	0%	33	39.4%	-	-	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
CERS6	253782	genome.wustl.edu	37	2	169626036	169626036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203463.1	+1	validated	p.R340Q	1.000	135	0%	71	43.7%	-	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
ABCB11	8647	genome.wustl.edu	37	2	169801231	169801231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003742.2	-1	reviewed	p.R832C	0.998	280	0%	140	34.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LRP2	4036	genome.wustl.edu	37	2	170014001	170014001	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.E3967*	0.003	403	0%	248	25.8%	-	-	-	-	-	superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170038701	170038701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.G3325E	1.000	326	0%	176	14.2%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170042229	170042229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R3210K	1.000	405	0%	207	39.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170062935	170062935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R2432I	1.000	244	0%	160	38.1%	-	-	benign(0.106)	deleterious(0)	neutral(0.453)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170090091	170090091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R1643Q	0.983	91	0%	51	13.7%	-	-	benign(0.151)	tolerated(0.37)	neutral(0.033)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170113652	170113652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.G874D	1.000	181	0%	109	36.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
FASTKD1	79675	genome.wustl.edu	37	2	170403007	170403007	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024622.3	-1	validated	p.A474	0.713	224	0%	130	37.7%	-	-	-	-	-	NULL
PHOSPHO2	493911	genome.wustl.edu	37	2	170557786	170557786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008489.2	+1	provisional	p.S102L	1.000	157	0%	88	36.4%	-	-	benign(0.059)	deleterious(0.03)	neutral(0.368)	HMMPfam_Put_Phosphatase,superfamily_HAD-like
PHOSPHO2	493911	genome.wustl.edu	37	2	170558163	170558163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008489.2	+1	provisional	p.G228S	1.000	64	0%	32	28.1%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Put_Phosphatase
KLHL23	151230	genome.wustl.edu	37	2	170592208	170592208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144711.4	+1	validated	p.I228M	0.995	92	0%	40	30%	-	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_BACK
SSB	6741	genome.wustl.edu	37	2	170662183	170662183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003142.3	+1	provisional	p.R60H	0.994	268	0%	140	42.1%	-	-	possibly_damaging(0.641)	tolerated(0.06)	deleterious(0.547)	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
MYO3B	140469	genome.wustl.edu	37	2	171243708	171243708	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.S489	0.025	197	0.5%	108	38%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO3B	140469	genome.wustl.edu	37	2	171248960	171248960	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.F582	1.000	212	0%	76	42.1%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO3B	140469	genome.wustl.edu	37	2	171258164	171258164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.R698C	1.000	105	0%	49	26.5%	-	-	possibly_damaging(0.487)	tolerated(0.09)	neutral(0.459)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
GAD1	2571	genome.wustl.edu	37	2	171713632	171713632	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000817.2	+1	reviewed	p.G506	0.065	251	0%	118	39%	-	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
TLK1	9874	genome.wustl.edu	37	2	171853237	171853237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012290.4	-1	validated	p.L684I	1.000	402	0%	195	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TLK1	9874	genome.wustl.edu	37	2	171863327	171863327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012290.4	-1	validated	p.F527L	1.000	379	0%	213	39.4%	-	-	probably_damaging(0.965)	tolerated(0.09)	deleterious(0.704)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DCAF17	80067	genome.wustl.edu	37	2	172305217	172305217	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025000.3	+1	reviewed	p.D116E	1.000	154	0%	72	26.4%	-	-	unknown(0)	-	-	NULL
DCAF17	80067	genome.wustl.edu	37	2	172330394	172330394	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025000.3	+1	reviewed	p.E334*	1.000	336	0%	155	34.8%	-	-	-	-	-	NULL
DCAF17	80067	genome.wustl.edu	37	2	172333428	172333428	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025000.3	+1	reviewed	p.F384V	1.000	364	0%	155	12.3%	-	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
CYBRD1	79901	genome.wustl.edu	37	2	172398200	172398200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024843.3	+1	validated	p.S100Y	0.194	344	0%	252	32.9%	-	-	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_Cytochrom_B561,HMMSmart_B561
METAP1D	254042	genome.wustl.edu	37	2	172935775	172935775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199227.1	+1	validated	p.F227L	1.000	298	0%	148	39.2%	-	-	benign(0.009)	tolerated(0.24)	neutral(0.038)	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
ITGA6	3655	genome.wustl.edu	37	2	173341184	173341184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079818.1	+1	reviewed	p.R444Q	0.943	668	0%	398	35.9%	-	-	benign(0.021)	tolerated(0.47)	neutral(0.012)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
RAPGEF4	11069	genome.wustl.edu	37	2	173853466	173853466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007023.3	+1	validated	p.A425S	1.000	137	0%	90	27.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
RAPGEF4	11069	genome.wustl.edu	37	2	173883523	173883523	+	Silent	SNP	C	C	A	rs61741759	byFrequency;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007023.3	+1	validated	p.S716	0.058	277	0.4%	150	40.7%	-	-	-	-	-	HMMPfam_RA,superfamily_Ras GEF
ZAK	51776	genome.wustl.edu	37	2	174081897	174081897	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016653.2	+1	reviewed	p.S302	1.000	138	0%	60	31.7%	-	-	-	-	-	NULL
CDCA7	83879	genome.wustl.edu	37	2	174231033	174231033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031942.4	+1	reviewed	p.R353H	1.000	174	0%	110	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-4CXXC_R1
SP3	6670	genome.wustl.edu	37	2	174820642	174820642	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003111.4	-1	reviewed	p.E200*	1.000	414	0%	226	37.2%	-	-	-	-	-	NULL
CIR1	9541	genome.wustl.edu	37	2	175243714	175243714	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004882.3	-1	validated	p.R141*	1.000	273	0%	169	27.2%	-	-	-	-	-	NULL
SCRN3	79634	genome.wustl.edu	37	2	175287641	175287641	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024583.3	+1	validated	p.E261	0.998	230	0%	124	12.9%	-	-	-	-	-	NULL
GPR155	151556	genome.wustl.edu	37	2	175338036	175338036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033045.2	-1	validated	p.A173T	1.000	81	0%	28	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mem_trans
GPR155	151556	genome.wustl.edu	37	2	175346367	175346367	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033045.2	-1	validated	p.I106	0.986	254	0%	117	25.6%	-	-	-	-	-	HMMPfam_Mem_trans
WIPF1	7456	genome.wustl.edu	37	2	175436691	175436691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077269.1	-1	reviewed	p.A281V	0.000	164	0%	82	39%	-	-	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
CHRNA1	1134	genome.wustl.edu	37	2	175613538	175613538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039523.2	-1	reviewed	p.D363N	1.000	242	0%	144	31.2%	-	-	benign(0.005)	tolerated(0.44)	neutral(0.013)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
CHN1	1123	genome.wustl.edu	37	2	175809619	175809619	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001822.4	-1	reviewed	p.C37	0.998	391	0%	158	44.9%	-	-	-	-	-	NULL
HOXD12	3238	genome.wustl.edu	37	2	176965333	176965333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021193.3	+1	reviewed	p.E220K	1.000	70	0%	39	23.1%	-	-	unknown(0)	tolerated(0.39)	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
HOXD9	3235	genome.wustl.edu	37	2	176988709	176988709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014213.3	+1	reviewed	p.R289C	1.000	370	0.3%	193	33.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
HOXD8	3234	genome.wustl.edu	37	2	176995630	176995630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019558.2	+1	reviewed	p.S179N	1.000	28	0%	16	56.2%	-	-	benign(0.008)	tolerated(0.6)	neutral(0.004)	superfamily_Homeodomain_like
HOXD8	3234	genome.wustl.edu	37	2	176996147	176996147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019558.2	+1	reviewed	p.R227I	1.000	174	0%	62	29%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
HOXD3	3232	genome.wustl.edu	37	2	177034319	177034319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006898.4	+1	reviewed	p.Q159H	1.000	158	0%	77	20.8%	-	-	possibly_damaging(0.892)	tolerated(0.07)	deleterious(0.670)	NULL
AGPS	8540	genome.wustl.edu	37	2	178310278	178310278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003659.3	+1	reviewed	p.R265Q	1.000	375	0%	159	34.6%	-	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	HMMPfam_FAD_binding_4,superfamily_FAD-binding domain
AGPS	8540	genome.wustl.edu	37	2	178402894	178402894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003659.3	+1	reviewed	p.N650D	1.000	380	0%	171	29.2%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain
TTC30A	92104	genome.wustl.edu	37	2	178481517	178481517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152275.3	-1	validated	p.R638I	0.960	644	0.2%	361	39.3%	-	-	benign(0.049)	tolerated(0.17)	neutral(0.062)	NULL
TTC30A	92104	genome.wustl.edu	37	2	178483080	178483080	+	Missense_Mutation	SNP	C	C	T	rs186153843	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152275.3	-1	validated	p.R117H	1.000	241	0%	125	36%	-	-	possibly_damaging(0.836)	deleterious(0.02)	deleterious(0.703)	superfamily_SSF48452
PDE11A	50940	genome.wustl.edu	37	2	178592832	178592832	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433879	-1	known	p.T227M	0.305	202	0%	110	35.5%	-	-	-	-	-	superfamily_HD-domain/PDEase-like
OSBPL6	114880	genome.wustl.edu	37	2	179197623	179197623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145739.1	+1	reviewed	p.A150E	0.961	318	0%	208	35.1%	-	-	possibly_damaging(0.538)	tolerated(1)	neutral(0.182)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
OSBPL6	114880	genome.wustl.edu	37	2	179247935	179247935	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145739.1	+1	reviewed	p.L606	1.000	154	0%	107	37.4%	-	-	-	-	-	HMMPfam_Oxysterol_BP
TTN	7273	genome.wustl.edu	37	2	179402291	179402291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R30645W	1.000	201	0.5%	144	34%	-	-	probably_damaging(1)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179404920	179404920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R30088Q	1.000	631	0.2%	408	25.7%	-	-	probably_damaging(0.99)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179416785	179416785	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.E27713*	1.000	279	0%	178	33.1%	-	-	probably_damaging(0.998)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179422940	179422940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.K26477N	1.000	124	0%	57	15.8%	-	-	probably_damaging(0.983)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179435390	179435390	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R22587*	0.448	573	0%	357	10.9%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179438501	179438501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.L21550I	1.000	177	0.6%	116	42.2%	-	-	probably_damaging(0.974)	-	-	HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179438775	179438775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.K21458N	0.996	240	0%	128	41.4%	-	-	possibly_damaging(0.556)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179458949	179458949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.D16821N	0.999	181	0%	97	40.2%	-	-	benign(0.29)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179470217	179470217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.F15367L	1.000	237	0%	143	30.8%	-	-	benign(0.014)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179473408	179473408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R14876C	1.000	267	0.4%	148	38.5%	-	-	possibly_damaging(0.737)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179476601	179476601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R14244I	1.000	318	0%	180	39.4%	-	-	possibly_damaging(0.539)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179481953	179481953	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.G13355	1.000	220	0%	115	34.8%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179486228	179486228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R12540Q	0.999	495	0%	297	39.7%	-	-	possibly_damaging(0.763)	-	-	HMMSmart_SM00408,HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179499952	179499952	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.I11420	0.999	634	0%	354	31.1%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179504465	179504465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.A11045T	0.456	577	0%	265	32.8%	-	-	benign(0.29)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179536931	179536931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R10364I	0.008	211	0%	92	33.7%	-	-	unknown(0)	deleterious(0)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179547611	179547611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E9725D	0.796	734	0%	398	37.7%	-	-	unknown(0)	tolerated(0.11)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179549099	179549099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.L9650I	0.999	540	0%	257	23.7%	-	-	unknown(0)	-	-	HMMPfam_PPAK
TTN	7273	genome.wustl.edu	37	2	179559594	179559594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.S9193Y	1.000	431	0%	197	34.5%	-	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
TTN	7273	genome.wustl.edu	37	2	179560727	179560727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E9114K	0.985	933	0%	501	34.3%	-	-	unknown(0)	deleterious(0.04)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179575795	179575795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.L8146I	1.000	158	0%	74	37.8%	-	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179578876	179578876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E7593K	1.000	239	0%	103	15.5%	-	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179590254	179590254	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E5649*	1.000	456	0%	264	15.5%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179592933	179592933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.V5296I	0.671	175	0%	100	45%	-	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179603991	179603991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342175	-1	known	p.N4486H	0.998	481	0%	257	39.7%	-	-	benign(0.127)	-	-	HMMSmart_SM00408,HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179605566	179605566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342175	-1	known	p.L3961I	0.203	289	0%	167	40.1%	-	-	benign(0.29)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179605675	179605675	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342175	-1	known	p.E3924	0.119	312	0%	140	40%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179611465	179611465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.S5221Y	0.998	317	0%	150	32.7%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179613102	179613102	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.E4675D	0.002	171	0%	53	47.2%	-	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
TTN	7273	genome.wustl.edu	37	2	179614883	179614883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.H4082N	0.219	246	0%	150	28.7%	-	-	benign(0.033)	tolerated(0.37)	neutral(0.021)	NULL
TTN	7273	genome.wustl.edu	37	2	179616129	179616129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.K3666N	0.049	404	0%	231	39.8%	-	-	benign(0.111)	deleterious(0.02)	neutral(0.392)	NULL
TTN	7273	genome.wustl.edu	37	2	179621152	179621152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342175	-1	known	p.K3513R	0.886	215	0%	142	35.2%	-	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179640584	179640584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.R2003C	1.000	216	0%	124	37.1%	-	-	possibly_damaging(0.737)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179647598	179647598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.R1012Q	1.000	145	0%	74	31.1%	-	-	possibly_damaging(0.465)	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179647686	179647686	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.I983L	1.000	203	0%	86	30.2%	-	-	benign(0.099)	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CCDC141	285025	genome.wustl.edu	37	2	179737031	179737031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173648.2	-1	provisional	p.E61D	0.004	598	0%	338	37.9%	-	-	benign(0.055)	tolerated(0.61)	neutral(0.007)	NULL
SESTD1	91404	genome.wustl.edu	37	2	179979860	179979860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178123.4	-1	validated	p.T591A	0.995	257	0%	101	13.9%	-	-	benign(0.098)	tolerated(0.19)	neutral(0.057)	HMMSmart_SPEC,superfamily_Spectrin
CERKL	375298	genome.wustl.edu	37	2	182403971	182403971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030311.2	-1	reviewed	p.E488D	1.000	291	0%	182	35.7%	-	-	benign(0.007)	tolerated(0.12)	neutral(0.261)	NULL
SSFA2	6744	genome.wustl.edu	37	2	182761670	182761670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130445.1	+1	validated	p.D115Y	1.000	994	0.1%	397	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPP1R1C	151242	genome.wustl.edu	37	2	182928463	182928463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080545.1	+1	provisional	p.Q62H	1.000	427	0%	245	29.8%	-	-	probably_damaging(0.99)	tolerated(0.4)	neutral(0.458)	HMMPfam_DARPP-32
LOC100287864	100287864	genome.wustl.edu	37	2	183731236	183731236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342282.1	+1	model	p.P168S	1.000	40	0%	40	15%	-	-	-	-	-	NULL
DUSP19	142679	genome.wustl.edu	37	2	183943770	183943770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080876.3	+1	validated	p.D37N	1.000	535	0%	258	10.1%	-	-	possibly_damaging(0.767)	tolerated(0.28)	neutral(0.316)	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185801020	185801020	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194250.1	+1	provisional	p.V299	0.000	50	0%	29	34.5%	-	-	-	-	-	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185801384	185801384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194250.1	+1	provisional	p.Q421E	1.000	142	0%	62	25.8%	-	-	benign(0.028)	tolerated(0.26)	neutral(0.036)	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185802289	185802289	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194250.1	+1	provisional	p.Y722	0.861	130	0%	64	10.9%	-	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671581	186671581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.D5850Y	0.001	174	0%	64	32.8%	-	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186672403	186672403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.E6124*	0.979	91	0%	60	40%	-	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186673098	186673098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.F6355L	0.992	20	0%	19	31.6%	-	-	possibly_damaging(0.917)	tolerated(0.45)	neutral(0.380)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186673349	186673349	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.F6439C	0.169	143	0%	66	56.1%	-	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
ITGAV	3685	genome.wustl.edu	37	2	187506265	187506265	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002210.3	+1	reviewed	p.F370C	0.997	245	0%	142	14.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ITGAV	3685	genome.wustl.edu	37	2	187541575	187541575	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002210.3	+1	reviewed	p.A988	0.037	429	0%	236	12.7%	-	-	-	-	-	superfamily_Integrin domains
FAM171B	165215	genome.wustl.edu	37	2	187627229	187627229	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177454.3	+1	validated	p.L720	0.605	131	0%	57	42.1%	-	-	-	-	-	HMMPfam_UPF0560
CALCRL	10203	genome.wustl.edu	37	2	188216685	188216685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005795.4	-1	validated	p.L378F	1.000	318	0%	79	30.4%	-	-	benign(0.31)	tolerated(0.32)	neutral(0.120)	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2
GULP1	51454	genome.wustl.edu	37	2	189434076	189434076	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016315.2	+1	validated	p.Q170H	1.000	280	0%	120	26.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GULP1	51454	genome.wustl.edu	37	2	189452778	189452778	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451191	+1	known	p.S140L	0.004	75	0%	38	34.2%	-	-	-	-	-	NULL
COL5A2	1290	genome.wustl.edu	37	2	189899823	189899823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	p.R1391H	1.000	503	0%	210	40.5%	-	-	probably_damaging(0.986)	-	-	HMMPfam_COLFI,HMMSmart_COLFI
COL5A2	1290	genome.wustl.edu	37	2	189904140	189904140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	p.K1261N	0.996	251	0%	144	41.7%	-	-	benign(0.221)	-	-	NULL
ASNSD1	54529	genome.wustl.edu	37	2	190531090	190531090	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019048.2	+1	validated	p.E78*	1.000	357	0%	206	31.1%	-	-	-	-	-	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ANKAR	150709	genome.wustl.edu	37	2	190541806	190541806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144708.3	+1	validated	p.F126C	1.000	46	0%	29	17.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
ANKAR	150709	genome.wustl.edu	37	2	190603328	190603328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144708.3	+1	validated	p.H1136P	1.000	521	0%	255	35.7%	-	-	possibly_damaging(0.838)	tolerated(0.15)	deleterious(0.561)	superfamily_ARM repeat
MSTN	2660	genome.wustl.edu	37	2	190924916	190924916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005259.2	-1	reviewed	p.D207Y	1.000	480	0%	227	41%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_TGFb_propeptide
INPP1	3628	genome.wustl.edu	37	2	191224855	191224855	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128928.1	+1	reviewed	p.L9	0.611	220	0%	96	41.7%	-	-	-	-	-	superfamily_Carbohydrate phosphatase
MFSD6	54842	genome.wustl.edu	37	2	191301351	191301351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017694.3	+1	validated	p.R199I	0.746	340	0%	148	41.2%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_MFS_gen_substrate_transporter
TMEM194B	100131211	genome.wustl.edu	37	2	191383715	191383715	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000343105	-1	known	p.E83*	0.003	245	0%	123	13.8%	-	-	-	-	-	NULL
GLS	2744	genome.wustl.edu	37	2	191759947	191759947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014905.3	+1	validated	p.E152D	1.000	137	0%	61	39.3%	-	-	benign(0.008)	tolerated(0.11)	neutral(0.272)	NULL
GLS	2744	genome.wustl.edu	37	2	191792187	191792187	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014905.3	+1	validated	p.F468	1.000	360	0%	214	30.4%	-	-	-	-	-	superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase
STAT4	6775	genome.wustl.edu	37	2	191927490	191927490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003151.2	-1	reviewed	p.K313N	1.000	397	0%	261	41.4%	-	-	benign(0.048)	deleterious(0.02)	neutral(0.386)	HMMPfam_STAT_alpha,superfamily_STAT
MYO1B	4430	genome.wustl.edu	37	2	192228910	192228910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	p.G314S	0.985	294	0.7%	165	32.7%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1B	4430	genome.wustl.edu	37	2	192234335	192234335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	p.R367Q	1.000	225	0%	92	35.9%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1B	4430	genome.wustl.edu	37	2	192275845	192275845	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427152	+1	known	p.E19*	1.000	270	0%	114	38.6%	-	-	benign(0.146)	tolerated(0.27)	neutral(0.046)	HMMPfam_Myosin_TH1
OBFC2A	64859	genome.wustl.edu	37	2	192543397	192543397	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031716.2	+1	validated	p.K19N	1.000	91	1.1%	44	43.2%	-	-	probably_damaging(0.993)	tolerated(0.06)	deleterious(0.772)	superfamily_Nucleic acid-binding proteins
OBFC2A	64859	genome.wustl.edu	37	2	192548993	192548993	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031716.2	+1	validated	p.N139T	0.689	572	0%	257	35%	-	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196620973	196620973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.V3824F	0.993	287	0%	140	24.3%	-	-	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196651884	196651884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.K3576N	1.000	172	0%	121	33.1%	-	-	possibly_damaging(0.671)	deleterious(0.02)	deleterious(0.621)	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196709789	196709789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.R2961Q	0.995	358	0%	181	33.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196720688	196720688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.K2814N	1.000	195	0%	85	35.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196753109	196753109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.R1760I	1.000	159	0%	83	41%	-	-	benign(0.186)	tolerated(0.13)	neutral(0.270)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196825105	196825105	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.E924*	1.000	147	0%	87	14.9%	-	-	-	-	-	HMMPfam_DHC_N2
DNAH7	56171	genome.wustl.edu	37	2	196849427	196849427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.D588N	0.898	317	0.3%	160	33.1%	-	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
HECW2	57520	genome.wustl.edu	37	2	197092955	197092955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.R1263K	1.000	176	0%	106	10.4%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
PGAP1	80055	genome.wustl.edu	37	2	197761892	197761892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024989.3	-1	validated	p.R297Q	1.000	149	0%	60	35%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases
PGAP1	80055	genome.wustl.edu	37	2	197784857	197784857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024989.3	-1	validated	p.K55N	1.000	359	0%	185	36.8%	-	-	benign(0.008)	tolerated(0.31)	neutral(0.027)	NULL
SF3B1	23451	genome.wustl.edu	37	2	198265007	198265007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012433.2	-1	reviewed	p.R957Q	1.000	282	0%	142	28.9%	-	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_HEAT,superfamily_ARM repeat
SF3B1	23451	genome.wustl.edu	37	2	198273209	198273209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012433.2	-1	reviewed	p.R334I	1.000	219	0%	132	33.3%	-	-	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	HMMPfam_SF3b1
HSPD1	3329	genome.wustl.edu	37	2	198353833	198353833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002156.4	-1	reviewed	p.R370C	1.000	211	0%	122	38.5%	-	-	possibly_damaging(0.867)	deleterious(0.02)	deleterious(0.720)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029
HSPD1	3329	genome.wustl.edu	37	2	198358872	198358872	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430176	-1	known	p.235	0.046	162	0%	68	32.4%	-	-	-	-	-	NULL
MARS2	92935	genome.wustl.edu	37	2	198571779	198571779	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138395.2	+1	validated	p.E550	0.004	189	0%	100	27%	-	-	-	-	-	superfamily_tRNAsyn_1a_bind
PLCL1	5334	genome.wustl.edu	37	2	198948912	198948912	+	Missense_Mutation	SNP	G	G	A	rs61752177		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.R126Q	0.997	271	0%	182	34.6%	-	-	benign(0.108)	tolerated(0.45)	neutral(0.021)	HMMSmart_PH
PLCL1	5334	genome.wustl.edu	37	2	198968630	198968630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.E927D	1.000	288	0%	122	16.4%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
SATB2	23314	genome.wustl.edu	37	2	200213813	200213813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015265.3	-1	reviewed	p.A262T	1.000	679	0.1%	304	34.5%	-	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	NULL
SGOL2	151246	genome.wustl.edu	37	2	201436752	201436752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152524.5	+1	validated	p.N561K	0.049	71	0%	23	43.5%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SGOL2	151246	genome.wustl.edu	37	2	201437671	201437671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152524.5	+1	validated	p.L868I	0.000	115	0%	42	16.7%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
AOX1	316	genome.wustl.edu	37	2	201501668	201501668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001159.3	+1	reviewed	p.N794S	1.000	391	0%	246	40.7%	-	-	possibly_damaging(0.728)	tolerated(0.42)	neutral(0.279)	HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain
FAM126B	285172	genome.wustl.edu	37	2	201846219	201846219	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173822.3	-1	validated	p.S456*	1.000	309	0%	163	35%	-	-	-	-	-	NULL
CFLAR	8837	genome.wustl.edu	37	2	202010147	202010147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127183.1	+1	validated	p.G218D	0.417	269	0%	128	47.7%	-	-	benign(0)	tolerated(0.89)	-	NULL
CASP10	843	genome.wustl.edu	37	2	202050695	202050695	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032977.3	+1	reviewed	p.L65	0.000	82	0%	55	34.5%	-	-	-	-	-	HMMPfam_DED,HMMSmart_DED,superfamily_DEATH_like
CASP10	843	genome.wustl.edu	37	2	202073863	202073863	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032977.3	+1	reviewed	p.E331	0.118	185	0%	115	42.6%	-	-	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_CASc,superfamily_SSF52129
CASP8	841	genome.wustl.edu	37	2	202131364	202131364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080125.1	+1	reviewed	p.R111I	0.456	183	0%	113	32.7%	-	-	possibly_damaging(0.832)	deleterious(0.02)	deleterious(0.700)	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
CASP8	841	genome.wustl.edu	37	2	202151207	202151207	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080125.1	+1	reviewed	p.T503P	1.000	337	0%	187	34.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
ALS2CR12	130540	genome.wustl.edu	37	2	202211343	202211343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139163.2	-1	validated	p.S97Y	0.683	236	0%	135	12.6%	-	-	possibly_damaging(0.814)	tolerated(0.14)	deleterious(0.557)	NULL
TRAK2	66008	genome.wustl.edu	37	2	202257694	202257694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015049.2	-1	validated	p.R351C	1.000	426	0%	227	24.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HAP1_N
ALS2CR11	151254	genome.wustl.edu	37	2	202356898	202356898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439140	-1	known	p.R1389I	0.095	211	0%	107	41.1%	-	-	possibly_damaging(0.926)	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202359173	202359173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439140	-1	known	p.L631I	0.000	297	0%	140	32.1%	-	-	probably_damaging(0.991)	-	-	NULL
MPP4	58538	genome.wustl.edu	37	2	202512533	202512533	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033066.2	-1	reviewed	p.R534*	1.000	277	0%	200	37%	-	-	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP4	58538	genome.wustl.edu	37	2	202549867	202549867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033066.2	-1	reviewed	p.G165E	1.000	133	0%	86	40.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MPP4	58538	genome.wustl.edu	37	2	202550737	202550737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033066.2	-1	reviewed	p.D133Y	1.000	309	0.6%	171	35.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PDZ domain-like,HMMSmart_SM00569,HMMPfam_L27
ALS2	57679	genome.wustl.edu	37	2	202591475	202591475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020919.3	-1	reviewed	p.R1032C	1.000	196	0%	122	43.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDK15	65061	genome.wustl.edu	37	2	202698625	202698625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139158.1	+1	provisional	p.L170I	1.000	479	0%	268	43.3%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FZD7	8324	genome.wustl.edu	37	2	202900987	202900987	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003507.1	+1	reviewed	p.I539	1.000	28	0%	22	40.9%	-	-	-	-	-	HMMPfam_Frizzled
FAM117B	150864	genome.wustl.edu	37	2	203630189	203630189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173511.3	+1	validated	p.I247T	1.000	117	0%	64	37.5%	-	-	probably_damaging(0.982)	tolerated(0.2)	deleterious(0.475)	NULL
NBEAL1	65065	genome.wustl.edu	37	2	203972576	203972576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114132.1	+1	validated	p.E509D	1.000	245	0%	144	31.9%	-	-	possibly_damaging(0.945)	tolerated(0.43)	neutral(0.403)	superfamily_ARM repeat
NBEAL1	65065	genome.wustl.edu	37	2	204016198	204016198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114132.1	+1	validated	p.P1796S	0.887	225	0%	108	20.4%	-	-	probably_damaging(0.988)	tolerated(0.7)	neutral(0.440)	NULL
NBEAL1	65065	genome.wustl.edu	37	2	204037556	204037556	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114132.1	+1	validated	p.N2072	1.000	334	0%	128	15.6%	-	-	-	-	-	HMMPfam_Beach,superfamily_BEACH domain
RAPH1	65059	genome.wustl.edu	37	2	204341869	204341869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203365.2	-1	validated	p.S248Y	1.000	361	0%	206	37.4%	-	-	benign(0.014)	deleterious(0.03)	neutral(0.365)	NULL
RAPH1	65059	genome.wustl.edu	37	2	204356005	204356005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213589.1	-1	validated	p.R53I	1.000	463	0%	171	38%	-	-	possibly_damaging(0.688)	deleterious(0.02)	deleterious(0.629)	NULL
CD28	940	genome.wustl.edu	37	2	204591673	204591673	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374481	+1	known	e3-1	0.061	171	0%	85	25.9%	-	-	-	-	-	-
ICOS	29851	genome.wustl.edu	37	2	204801596	204801596	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012092.3	+1	reviewed	e1+1	1.000	504	0%	224	34.4%	-	-	-	-	-	-
PARD3B	117583	genome.wustl.edu	37	2	206041173	206041173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152526.4	+1	validated	p.P537L	0.002	207	0%	113	41.6%	-	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
PARD3B	117583	genome.wustl.edu	37	2	206057938	206057938	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152526.4	+1	validated	p.V616	0.270	197	0%	91	12.1%	-	-	-	-	-	NULL
INO80D	54891	genome.wustl.edu	37	2	206869530	206869530	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017759.4	-1	validated	p.G882	0.715	447	0%	265	38.9%	-	-	-	-	-	NULL
INO80D	54891	genome.wustl.edu	37	2	206920931	206920931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017759.4	-1	validated	p.P319S	1.000	153	0%	113	32.7%	-	-	possibly_damaging(0.535)	tolerated(0.23)	neutral(0.223)	NULL
NDUFS1	4719	genome.wustl.edu	37	2	206994908	206994908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005006.5	-1	reviewed	p.R538W	1.000	161	0%	94	41.5%	-	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_Molybdopterin,superfamily_SSF53706
NDUFS1	4719	genome.wustl.edu	37	2	207003231	207003231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005006.5	-1	reviewed	p.S457L	0.999	231	0%	96	34.4%	-	-	benign(0.004)	tolerated(0.06)	neutral(0.323)	HMMPfam_Molybdopterin,superfamily_SSF53706
NDUFS1	4719	genome.wustl.edu	37	2	207012290	207012290	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005006.5	-1	reviewed	p.I172	0.985	416	0%	200	35%	-	-	-	-	-	superfamily_SSF54862
EEF1B2	1933	genome.wustl.edu	37	2	207026087	207026087	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037663.1	+1	reviewed	p.K74T	1.000	452	0%	280	33.9%	-	-	benign(0.132)	deleterious(0.05)	neutral(0.356)	superfamily_Glutathione S-transferase (GST) C-terminal domain
SNORA41	619569	genome.wustl.edu	37	2	207027073	207027073	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002590.1	+1	validated	NULL	0.997	57	0%	32	34.4%	-	-	-	-	-	-
EEF1B2	1933	genome.wustl.edu	37	2	207027283	207027283	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037663.1	+1	reviewed	p.A156	0.981	306	0%	161	29.2%	-	-	-	-	-	HMMPfam_EF1_GNE,superfamily_eEF-1beta-like
GPR1	2825	genome.wustl.edu	37	2	207041727	207041727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098199.1	-1	validated	p.A82V	1.000	152	0%	77	37.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZDBF2	57683	genome.wustl.edu	37	2	207169946	207169946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.D232Y	0.000	90	0%	42	40.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207172814	207172814	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.E1188*	0.009	204	0%	106	43.4%	-	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207172829	207172829	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.Q1193*	0.000	204	0%	96	24%	-	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207173927	207173927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.D1559Y	0.000	119	0%	71	35.2%	-	-	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175774	207175774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.K2174N	0.023	103	0%	33	57.6%	-	-	probably_damaging(0.98)	deleterious(0.05)	deleterious(0.769)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175962	207175962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.R2237I	0.000	133	0%	60	41.7%	-	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
ADAM23	8745	genome.wustl.edu	37	2	207414829	207414829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003812.2	+1	reviewed	p.G293D	1.000	345	0%	133	33.1%	-	-	benign(0.218)	tolerated(1)	neutral(0.021)	NULL
ADAM23	8745	genome.wustl.edu	37	2	207425919	207425919	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003812.2	+1	reviewed	p.G413*	1.000	587	0%	284	32.4%	-	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
DYTN	391475	genome.wustl.edu	37	2	207564514	207564514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093730.1	-1	provisional	p.A219D	0.037	299	0%	150	41.3%	-	-	possibly_damaging(0.512)	deleterious(0)	deleterious(0.617)	superfamily_SSF47473
MDH1B	130752	genome.wustl.edu	37	2	207629988	207629988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039845.1	-1	validated	p.K3T	1.000	126	0%	65	40%	-	-	possibly_damaging(0.937)	deleterious(0.04)	deleterious(0.732)	NULL
KLF7	8609	genome.wustl.edu	37	2	207953246	207953246	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003709.2	-1	provisional	p.E265*	1.000	365	0%	219	34.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
METTL21A	151194	genome.wustl.edu	37	2	208478143	208478143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127395.1	-1	validated	p.R95Q	1.000	145	0%	86	33.7%	-	-	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
C2orf80	389073	genome.wustl.edu	37	2	209047764	209047764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099334.2	-1	validated	p.Y44C	1.000	201	0%	113	23%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209141499	209141499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.R129Q	1.000	205	0%	118	31.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209189703	209189703	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.T800	0.830	412	0%	214	29.9%	-	-	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
PIKFYVE	200576	genome.wustl.edu	37	2	209190072	209190072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.D846G	1.000	227	0%	184	32.1%	-	-	possibly_damaging(0.451)	tolerated(0.33)	neutral(0.171)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like
PIKFYVE	200576	genome.wustl.edu	37	2	209190824	209190824	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.E1097*	1.000	137	0%	70	32.9%	-	-	-	-	-	NULL
MAP2	4133	genome.wustl.edu	37	2	210557748	210557748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002374.3	+1	reviewed	p.S285Y	1.000	74	0%	51	47.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAP2	4133	genome.wustl.edu	37	2	210558590	210558590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002374.3	+1	reviewed	p.K566E	1.000	152	0%	78	37.2%	-	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210560557	210560557	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002374.3	+1	reviewed	p.L1221F	0.044	177	0%	88	45.5%	-	-	benign(0.313)	tolerated(0.17)	neutral(0.157)	HMMPfam_MAP2_projctn
UNC80	285175	genome.wustl.edu	37	2	210685193	210685193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.L707F	0.997	321	0%	176	42%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
UNC80	285175	genome.wustl.edu	37	2	210696276	210696276	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.C912	0.998	241	0%	113	31.9%	-	-	-	-	-	NULL
UNC80	285175	genome.wustl.edu	37	2	210745750	210745750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.L1350M	1.000	263	0%	197	38.1%	-	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	NULL
UNC80	285175	genome.wustl.edu	37	2	210801619	210801619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.L2043I	1.000	424	0%	225	33.8%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
UNC80	285175	genome.wustl.edu	37	2	210808137	210808137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.R2251C	1.000	258	0%	138	40.6%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
UNC80	285175	genome.wustl.edu	37	2	210860235	210860235	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.E3231	1.000	140	0%	90	34.4%	-	-	-	-	-	NULL
RPE	6120	genome.wustl.edu	37	2	210880791	210880791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199229.1	+1	provisional	p.E99D	1.000	272	0%	172	33.1%	-	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_Ribul_P_3_epim,superfamily_Ribulose-phoshate binding barrel
KANSL1L	151050	genome.wustl.edu	37	2	210893658	210893658	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152519.2	-1	validated	p.S769	1.000	399	0%	220	43.2%	-	-	-	-	-	NULL
KANSL1L	151050	genome.wustl.edu	37	2	210905246	210905246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152519.2	-1	validated	p.P643S	1.000	281	0%	150	36.7%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
ACADL	33	genome.wustl.edu	37	2	211082810	211082810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001608.3	-1	reviewed	p.E84*	1.000	414	0%	170	34.1%	-	-	-	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
ACADL	33	genome.wustl.edu	37	2	211085456	211085456	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001608.3	-1	reviewed	p.R50	1.000	260	0%	161	29.8%	-	-	-	-	-	superfamily_AcylCoA_dehyd_NM
MYL1	4632	genome.wustl.edu	37	2	211159056	211159056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_079420.2	-1	reviewed	p.D131N	1.000	522	0%	309	42.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00054,superfamily_EF-hand
MYL1	4632	genome.wustl.edu	37	2	211167231	211167231	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_079420.2	-1	reviewed	p.F47	1.000	300	0%	169	30.8%	-	-	-	-	-	superfamily_EF-hand
LANCL1	10314	genome.wustl.edu	37	2	211306088	211306088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136574.1	-1	reviewed	p.L163I	1.000	301	0%	141	31.2%	-	-	benign(0.006)	tolerated(0.13)	neutral(0.253)	HMMPfam_LANC_like
ERBB4	2066	genome.wustl.edu	37	2	212495187	212495187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005235.2	-1	reviewed	p.E693D	1.000	275	0%	146	36.3%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ERBB4	2066	genome.wustl.edu	37	2	212587251	212587251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005235.2	-1	reviewed	p.M250I	1.000	403	0%	211	11.4%	-	-	benign(0.289)	deleterious(0.05)	neutral(0.434)	HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain
ERBB4	2066	genome.wustl.edu	37	2	212652804	212652804	+	Missense_Mutation	SNP	G	G	A	rs138433638	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005235.2	-1	reviewed	p.R168W	1.000	241	0%	118	22.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_L domain-like
SPAG16	79582	genome.wustl.edu	37	2	214181971	214181971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024532.3	+1	validated	p.E143K	0.005	386	0%	129	24%	-	-	benign(0.001)	tolerated(0.9)	-	superfamily_WD40 repeat-like
ABCA12	26154	genome.wustl.edu	37	2	215884385	215884385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.E475K	0.186	212	0%	108	31.5%	-	-	benign(0.021)	tolerated(0.06)	neutral(0.324)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215884484	215884484	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.E442*	0.997	114	0%	63	41.3%	-	-	-	-	-	NULL
ABCA12	26154	genome.wustl.edu	37	2	215910661	215910661	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.E258*	1.000	304	0%	158	37.3%	-	-	-	-	-	NULL
FN1	2335	genome.wustl.edu	37	2	216238122	216238122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.G2057V	0.990	421	0%	273	44.7%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216240034	216240034	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.R2020	0.982	146	0%	93	34.4%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216243945	216243945	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.R1844*	1.000	288	0%	184	28.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216269369	216269369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.A999V	1.000	144	0%	74	36.5%	-	-	benign(0.017)	tolerated(0.07)	neutral(0.320)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216271097	216271097	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.H950	0.000	104	0%	87	33.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216279574	216279574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.L643I	1.000	280	0%	116	13.8%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216288200	216288200	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.F422	1.000	357	0%	171	33.9%	-	-	-	-	-	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Kringle-like
TMEM169	92691	genome.wustl.edu	37	2	216964945	216964945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142310.1	+1	validated	p.L192I	1.000	509	0%	285	23.9%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
XRCC5	7520	genome.wustl.edu	37	2	216986888	216986888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021141.3	+1	reviewed	p.E199K	0.257	278	0%	128	30.5%	-	-	benign(0.042)	tolerated(0.27)	neutral(0.036)	HMMSmart_VWA,HMMPfam_Ku_N,superfamily_SSF53300
XRCC5	7520	genome.wustl.edu	37	2	217069114	217069114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021141.3	+1	reviewed	p.D727N	1.000	356	0%	132	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TNS1	7145	genome.wustl.edu	37	2	218682617	218682617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.A1376T	0.975	164	0%	93	34.4%	-	-	possibly_damaging(0.872)	deleterious(0.05)	deleterious(0.684)	NULL
TNS1	7145	genome.wustl.edu	37	2	218712919	218712919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.S649L	0.998	52	0%	43	41.9%	-	-	benign(0.235)	deleterious(0)	neutral(0.468)	NULL
TNS1	7145	genome.wustl.edu	37	2	218762620	218762620	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.I23	0.771	155	0%	127	36.2%	-	-	-	-	-	superfamily_SSF52799
CXCR1	3577	genome.wustl.edu	37	2	219029581	219029581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000634.2	-1	reviewed	p.E118D	0.988	319	0%	213	38%	-	-	possibly_damaging(0.505)	deleterious(0.03)	deleterious(0.533)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PNKD	25953	genome.wustl.edu	37	2	219136137	219136137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015488.4	+1	reviewed	p.S34Y	0.993	131	0%	72	29.2%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
C2orf62	375307	genome.wustl.edu	37	2	219232222	219232222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198559.1	+1	predicted	p.S301L	0.098	195	0%	107	13.1%	-	-	benign(0.042)	deleterious(0)	neutral(0.447)	NULL
VIL1	7429	genome.wustl.edu	37	2	219300074	219300074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007127.2	+1	reviewed	p.E581D	1.000	131	0.8%	71	23.9%	-	-	benign(0.001)	tolerated(1)	-	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753
RQCD1	9125	genome.wustl.edu	37	2	219457412	219457412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005444.1	+1	provisional	p.R238Q	1.000	272	0%	119	41.2%	-	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	HMMPfam_Rcd1,superfamily_ARM repeat
PLCD4	84812	genome.wustl.edu	37	2	219483493	219483493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032726.2	+1	provisional	p.L125I	0.010	68	0%	56	26.8%	-	-	benign(0.004)	tolerated(0.39)	neutral(0.016)	HMMSmart_SM00233
TTLL4	9654	genome.wustl.edu	37	2	219604833	219604833	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014640.4	+1	validated	p.E514*	0.998	418	0%	203	29.6%	-	-	-	-	-	NULL
TTLL4	9654	genome.wustl.edu	37	2	219617682	219617682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014640.4	+1	validated	p.G1058D	0.991	363	0%	319	37.3%	-	-	benign(0.025)	tolerated(0.34)	neutral(0.024)	NULL
PRKAG3	53632	genome.wustl.edu	37	2	219692351	219692351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017431.2	-1	reviewed	p.E274D	1.000	209	0%	155	29.7%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_CBS
WNT10A	80326	genome.wustl.edu	37	2	219754716	219754716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025216.2	+1	reviewed	p.E129D	1.000	163	0%	96	22.9%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_wnt,HMMSmart_SM00097
CRYBA2	1412	genome.wustl.edu	37	2	219855604	219855604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005209.1	-1	reviewed	p.D139G	1.000	133	0%	77	36.4%	-	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
CCDC108	255101	genome.wustl.edu	37	2	219875639	219875639	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.K1346T	1.000	180	0%	124	30.6%	-	-	possibly_damaging(0.937)	tolerated(0.11)	deleterious(0.655)	NULL
CCDC108	255101	genome.wustl.edu	37	2	219888855	219888855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.S826L	0.004	121	0.8%	66	40.9%	-	-	possibly_damaging(0.742)	tolerated(0.07)	deleterious(0.591)	superfamily_PapD-like
NHEJ1	79840	genome.wustl.edu	37	2	220012390	220012390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024782.2	-1	reviewed	p.T173M	0.000	428	0%	232	38.4%	-	-	benign(0.05)	tolerated(0.11)	neutral(0.275)	HMMPfam_XLF
NHEJ1	79840	genome.wustl.edu	37	2	220022258	220022258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024782.2	-1	reviewed	p.R109Q	1.000	185	0%	132	16.7%	-	-	benign(0.253)	tolerated(0.19)	neutral(0.075)	HMMPfam_XLF
ZFAND2B	130617	genome.wustl.edu	37	2	220073722	220073722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138802.1	+1	provisional	p.A227V	1.000	118	0%	105	34.3%	-	-	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	HMMPfam_UIM,HMMSmart_SM00726
ABCB6	10058	genome.wustl.edu	37	2	220080750	220080750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005689.1	-1	reviewed	p.R375W	1.000	21	0%	26	57.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
TUBA4A	7277	genome.wustl.edu	37	2	220115876	220115876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006000.1	-1	reviewed	p.V182A	1.000	273	0%	160	23.1%	-	-	possibly_damaging(0.894)	deleterious(0)	deleterious(0.796)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
SPEG	10290	genome.wustl.edu	37	2	220348754	220348754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.K2190T	0.000	106	0%	41	31.7%	-	-	possibly_damaging(0.919)	deleterious(0.02)	deleterious(0.752)	NULL
SPEG	10290	genome.wustl.edu	37	2	220354612	220354612	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.R2958*	1.000	31	0%	23	26.1%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
SPEG	10290	genome.wustl.edu	37	2	220355272	220355272	+	Silent	SNP	G	G	A	rs191833179	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.R3021	1.000	75	0%	48	41.7%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ASIC4	55515	genome.wustl.edu	37	2	220379567	220379567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018674.4	+1	reviewed	p.D168Y	1.000	16	0%	13	53.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TMEM198	130612	genome.wustl.edu	37	2	220412329	220412329	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005209.1	+1	provisional	p.L90	1.000	214	0%	121	33.1%	-	-	-	-	-	NULL
EPHA4	2043	genome.wustl.edu	37	2	222428881	222428881	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004438.3	-1	reviewed	p.N131	0.964	275	0%	143	40.6%	-	-	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
SGPP2	130367	genome.wustl.edu	37	2	223386613	223386613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152386.2	+1	provisional	p.A169V	1.000	108	0%	90	14.4%	-	-	probably_damaging(1)	tolerated(0.66)	deleterious(0.502)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
ACSL3	2181	genome.wustl.edu	37	2	223773807	223773807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004457.3	+1	reviewed	p.G106E	1.000	226	0%	95	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56801
WDFY1	57590	genome.wustl.edu	37	2	224763760	224763760	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020830.3	-1	reviewed	p.F171	1.000	283	0%	134	38.8%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDFY1	57590	genome.wustl.edu	37	2	224770686	224770686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020830.3	-1	reviewed	p.M104I	1.000	418	0%	173	32.4%	-	-	benign(0.064)	tolerated(0.17)	neutral(0.063)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MRPL44	65080	genome.wustl.edu	37	2	224824263	224824263	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022915.3	+1	reviewed	p.P64	0.985	84	0%	71	19.7%	-	-	-	-	-	superfamily_RNase_III
CUL3	8452	genome.wustl.edu	37	2	225378246	225378246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003590.3	-1	validated	p.F217V	1.000	130	0%	68	25%	-	-	benign(0.177)	deleterious(0)	neutral(0.461)	HMMPfam_Cullin,superfamily_Cullin repeat
DOCK10	55619	genome.wustl.edu	37	2	225651788	225651788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.S1869L	1.000	221	0%	141	68.8%	-	-	benign(0.363)	deleterious(0.04)	neutral(0.464)	NULL
DOCK10	55619	genome.wustl.edu	37	2	225659689	225659689	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409802	-1	known	p.P413S	1.000	356	0.3%	267	32.6%	-	-	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225670001	225670001	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.R1325*	1.000	257	0%	136	11%	-	-	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225672773	225672773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.F1147C	1.000	307	0%	175	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IRS1	3667	genome.wustl.edu	37	2	227661897	227661897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005544.2	-1	reviewed	p.R520W	0.930	54	0%	38	13.2%	-	-	probably_damaging(0.983)	deleterious(0.05)	deleterious(0.774)	NULL
COL4A4	1286	genome.wustl.edu	37	2	227872101	227872101	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000092.4	-1	reviewed	p.K1671	0.838	420	0.2%	235	30.6%	-	-	-	-	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
COL4A3	1285	genome.wustl.edu	37	2	228122332	228122332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.D334G	0.670	443	0%	247	30.8%	-	-	unknown(0)	tolerated(0.26)	-	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228168598	228168598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.L1327I	0.993	272	0%	109	27.5%	-	-	unknown(0)	tolerated(0.4)	-	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228168773	228168773	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.L1356V	0.869	148	0%	86	29.1%	-	-	unknown(0)	tolerated(0.91)	-	NULL
MFF	56947	genome.wustl.edu	37	2	228195398	228195398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020194.4	+1	provisional	p.R32Q	1.000	218	0%	101	38.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF800
AGFG1	3267	genome.wustl.edu	37	2	228401360	228401360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135187.1	+1	reviewed	p.P433S	1.000	201	0%	114	36.8%	-	-	benign(0.009)	tolerated(0.44)	neutral(0.013)	NULL
SLC19A3	80704	genome.wustl.edu	37	2	228564165	228564165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025243.3	-1	reviewed	p.S89N	0.799	164	0%	99	29.3%	-	-	possibly_damaging(0.477)	deleterious(0.04)	deleterious(0.506)	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
SPHKAP	80309	genome.wustl.edu	37	2	228855738	228855738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142644.1	-1	validated	p.S1646Y	1.000	238	0%	132	9.8%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_AKAP_110
SPHKAP	80309	genome.wustl.edu	37	2	228882694	228882694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142644.1	-1	validated	p.F959S	1.000	258	0%	167	35.3%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228892252	228892252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142644.1	-1	validated	p.F85C	1.000	286	0%	174	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNER	92737	genome.wustl.edu	37	2	230312257	230312257	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139072.3	-1	validated	e8-1	1.000	43	0%	35	34.3%	-	-	-	-	-	-
TRIP12	9320	genome.wustl.edu	37	2	230636299	230636299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004238.1	-1	provisional	p.S1840L	1.000	239	0%	81	35.8%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
SP140	11262	genome.wustl.edu	37	2	231150507	231150507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007237.4	+1	validated	p.K535N	0.006	440	0%	212	34%	-	-	possibly_damaging(0.923)	tolerated(0.06)	deleterious(0.695)	NULL
SP140	11262	genome.wustl.edu	37	2	231157365	231157365	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007237.4	+1	validated	p.I610	0.000	394	0%	209	37.8%	-	-	-	-	-	HMMPfam_SAND,HMMSmart_SM00258,superfamily_SAND domain-like
SP140L	93349	genome.wustl.edu	37	2	231248272	231248272	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138402.4	+1	provisional	p.K229Q	0.000	691	0%	258	41.9%	-	-	possibly_damaging(0.751)	tolerated(0.13)	deleterious(0.528)	NULL
SP140L	93349	genome.wustl.edu	37	2	231265703	231265703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138402.4	+1	provisional	p.K449N	0.009	478	0.2%	258	18.2%	-	-	possibly_damaging(0.931)	tolerated(0.1)	deleterious(0.664)	superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
SPATA3	130560	genome.wustl.edu	37	2	231865178	231865178	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139073.3	+1	validated	p.I133	1.000	53	0%	65	49.2%	-	-	-	-	-	NULL
PSMD1	5707	genome.wustl.edu	37	2	231937053	231937053	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002807.2	+1	reviewed	p.R269*	1.000	410	0%	257	15.6%	-	-	-	-	-	NULL
PSMD1	5707	genome.wustl.edu	37	2	232003643	232003643	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447633	+1	known	p.A185	0.665	69	0%	39	28.2%	-	-	benign(0.019)	-	-	NULL
B3GNT7	93010	genome.wustl.edu	37	2	232263034	232263034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145236.2	+1	validated	p.D202N	1.000	53	0%	44	54.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T
NCL	4691	genome.wustl.edu	37	2	232321448	232321448	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005381.2	-1	reviewed	p.F533	0.943	283	0%	131	28.2%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
NCL	4691	genome.wustl.edu	37	2	232321772	232321772	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005381.2	-1	reviewed	p.E504A	1.000	584	0%	325	41.8%	-	-	possibly_damaging(0.76)	deleterious(0.03)	deleterious(0.645)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ALPI	248	genome.wustl.edu	37	2	233321363	233321363	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001631.3	+1	reviewed	p.T86	0.000	136	0%	68	36.8%	-	-	-	-	-	HMMPfam_Alk_phosphatase,HMMSmart_SM00098,superfamily_Alkaline phosphatase-like
EIF4E2	9470	genome.wustl.edu	37	2	233431582	233431582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004846.2	+1	validated	p.R140Q	1.000	506	0%	249	31.7%	-	-	benign(0.427)	deleterious(0.01)	deleterious(0.544)	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
GIGYF2	26058	genome.wustl.edu	37	2	233613721	233613721	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.E66*	1.000	219	0%	118	11%	-	-	-	-	-	NULL
KCNJ13	3769	genome.wustl.edu	37	2	233633360	233633360	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002242.4	-1	reviewed	p.L208	1.000	358	0%	205	34.6%	-	-	-	-	-	HMMPfam_IRK,superfamily_E set domains
GIGYF2	26058	genome.wustl.edu	37	2	233671241	233671241	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.A581	0.915	562	0%	241	34.9%	-	-	-	-	-	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF
GIGYF2	26058	genome.wustl.edu	37	2	233681608	233681608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.M767L	1.000	368	0%	136	33.1%	-	-	unknown(0)	tolerated(1)	-	NULL
NGEF	25791	genome.wustl.edu	37	2	233839365	233839365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019850.2	-1	validated	p.D79G	0.000	694	0%	389	36.2%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
DGKD	8527	genome.wustl.edu	37	2	234357951	234357951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152879.2	+1	reviewed	p.R606Q	0.971	119	0%	78	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DGKD	8527	genome.wustl.edu	37	2	234363466	234363466	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152879.2	+1	reviewed	p.A774	0.189	313	0%	143	39.2%	-	-	-	-	-	HMMPfam_DAGK_acc,HMMSmart_SM00045
USP40	55230	genome.wustl.edu	37	2	234421238	234421238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018218.2	-1	validated	p.R816I	0.963	197	0%	74	37.8%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
USP40	55230	genome.wustl.edu	37	2	234465631	234465631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018218.2	-1	validated	p.R151Q	1.000	170	0%	101	21.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UCH,superfamily_Cysteine proteinases
UGT1A10	54575	genome.wustl.edu	37	2	234545238	234545238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019075.2	+1	reviewed	p.E24K	0.214	299	0%	217	35%	-	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
UGT1A7	54577	genome.wustl.edu	37	2	234590891	234590891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019077.2	+1	reviewed	p.R103Q	0.000	317	0%	200	45.5%	-	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A4	54657	genome.wustl.edu	37	2	234628239	234628239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007120.2	+1	reviewed	p.R258Q	0.140	422	0%	319	35.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
DNAJB3	414061	genome.wustl.edu	37	2	234652170	234652170	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001394.3	-1	validated	p.G131	0.041	62	0%	39	33.3%	-	-	-	-	-	NULL
UGT1A1	54658	genome.wustl.edu	37	2	234669244	234669244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000463.2	+1	reviewed	p.S104Y	0.056	172	0%	120	40%	-	-	benign(0.038)	tolerated(0.35)	neutral(0.022)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
HJURP	55355	genome.wustl.edu	37	2	234749822	234749822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018410.3	-1	validated	p.R535H	0.000	624	0%	364	37.1%	-	-	probably_damaging(0.998)	tolerated(0.51)	deleterious(0.483)	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235951000	235951000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014521.2	+1	reviewed	p.F529	0.370	194	0%	106	34.9%	-	-	-	-	-	NULL
AGAP1	116987	genome.wustl.edu	37	2	236706464	236706464	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037131.1	+1	validated	p.S245	0.070	111	0%	132	26.5%	-	-	-	-	-	NULL
IQCA1	79781	genome.wustl.edu	37	2	237272583	237272583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024726.3	-1	provisional	p.S570L	0.538	324	0%	189	34.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
IQCA1	79781	genome.wustl.edu	37	2	237396807	237396807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024726.3	-1	provisional	p.D162N	0.986	260	0.4%	168	35.1%	-	-	benign(0.119)	tolerated(0.08)	neutral(0.309)	NULL
COL6A3	1293	genome.wustl.edu	37	2	238234251	238234251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.E3149K	0.659	478	0%	268	72.4%	-	-	unknown(0)	-	-	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like
COL6A3	1293	genome.wustl.edu	37	2	238277290	238277290	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.E1606*	0.702	148	0%	73	37%	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238289603	238289603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.P618S	0.999	87	0%	46	10.9%	-	-	benign(0.035)	tolerated(0.31)	neutral(0.029)	HMMPfam_VWA,HMMSmart_SM00327
RBM44	375316	genome.wustl.edu	37	2	238738012	238738012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080504.2	+1	validated	p.R919I	0.000	264	0%	95	34.7%	-	-	possibly_damaging(0.852)	tolerated(0.1)	deleterious(0.614)	NULL
RAMP1	10267	genome.wustl.edu	37	2	238820254	238820254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005855.2	+1	reviewed	p.F92L	1.000	36	0%	43	25.6%	-	-	benign(0.213)	tolerated(0.05)	neutral(0.366)	HMMPfam_RAMP
ESPNL	339768	genome.wustl.edu	37	2	239025586	239025586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194312.2	+1	validated	p.R300W	0.600	79	0%	53	24.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,superfamily_Ankyrin repeat
ILKAP	80895	genome.wustl.edu	37	2	239098610	239098610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030768.2	-1	reviewed	p.S61Y	1.000	438	0%	301	36.2%	-	-	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
PER2	8864	genome.wustl.edu	37	2	239169537	239169537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022817.2	-1	reviewed	p.E492K	1.000	46	0%	45	35.6%	-	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
TRAF3IP1	26146	genome.wustl.edu	37	2	239237579	239237579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015650.3	+1	validated	p.A171T	0.784	294	0.3%	103	40.8%	-	-	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_MIP-T3
ASB1	51665	genome.wustl.edu	37	2	239344467	239344467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040445.1	+1	reviewed	p.E103K	0.999	93	0%	54	33.3%	-	-	possibly_damaging(0.513)	tolerated(0.17)	neutral(0.231)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TWIST2	117581	genome.wustl.edu	37	2	239757291	239757291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057179.1	+1	reviewed	p.F145L	1.000	36	0%	39	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HDAC4	9759	genome.wustl.edu	37	2	240003822	240003822	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006037.3	-1	reviewed	p.F871	1.000	202	0%	65	20%	-	-	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
NDUFA10	4705	genome.wustl.edu	37	2	240957978	240957978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004544.3	-1	reviewed	p.R180Q	0.996	168	0%	66	18.2%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_dNK,superfamily_SSF52540
MYEOV2	150678	genome.wustl.edu	37	2	241066036	241066036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138336.1	-1	validated	p.V235I	0.000	405	0%	287	23.7%	-	-	unknown(0)	-	-	NULL
ANKMY1	51281	genome.wustl.edu	37	2	241452326	241452326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016552.2	-1	validated	p.A591T	0.861	117	0%	115	39.1%	-	-	possibly_damaging(0.664)	tolerated(0.07)	deleterious(0.554)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKMY1	51281	genome.wustl.edu	37	2	241465732	241465732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016552.2	-1	validated	p.E273K	0.039	232	0%	163	24.5%	-	-	benign(0.001)	tolerated(0.69)	neutral(0.002)	superfamily_Ankyrin repeat
RNPEPL1	57140	genome.wustl.edu	37	2	241514991	241514991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018226.3	+1	provisional	p.P261S	1.000	99	0%	44	43.2%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_SSF55486
RNPEPL1	57140	genome.wustl.edu	37	2	241517180	241517180	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018226.3	+1	provisional	p.P452	0.000	22	0%	19	42.1%	-	-	-	-	-	NULL
SNED1	25992	genome.wustl.edu	37	2	242002212	242002212	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080437.1	+1	provisional	p.I754	0.002	176	0%	142	38%	-	-	-	-	-	HMMSmart_SM00179,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,superfamily_EGF/Laminin
SNED1	25992	genome.wustl.edu	37	2	242026887	242026887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080437.1	+1	provisional	p.N1401S	0.014	128	0%	66	39.4%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
MTERFD2	130916	genome.wustl.edu	37	2	242038994	242038994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182501.3	-1	validated	p.L113I	0.375	155	0%	103	33%	-	-	probably_damaging(0.955)	tolerated(0.26)	neutral(0.432)	HMMPfam_mTERF
PASK	23178	genome.wustl.edu	37	2	242062183	242062183	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.F1012	0.957	110	0%	57	35.1%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PASK	23178	genome.wustl.edu	37	2	242063486	242063486	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.L928	1.000	57	0%	54	37%	-	-	-	-	-	NULL
PASK	23178	genome.wustl.edu	37	2	242065629	242065629	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.R901*	0.977	54	0%	38	34.2%	-	-	-	-	-	NULL
ANO7	50636	genome.wustl.edu	37	2	242151524	242151524	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001891.3	+1	validated	p.Q580P	0.998	172	0%	85	35.3%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HDLBP	3069	genome.wustl.edu	37	2	242179436	242179436	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373292	-1	known	p.W566R	0.000	323	0%	232	37.5%	-	-	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FARP2	9855	genome.wustl.edu	37	2	242432824	242432824	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014808.2	+1	validated	p.Y1004*	1.000	197	0%	124	32.3%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ATG4B	23192	genome.wustl.edu	37	2	242594745	242594745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013325.4	+1	reviewed	p.A149T	1.000	325	0.3%	199	10.1%	-	-	possibly_damaging(0.943)	deleterious(0.02)	deleterious(0.770)	HMMPfam_Peptidase_C54
CHL1	10752	genome.wustl.edu	37	3	405019	405019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006614.2	+1	reviewed	p.E513G	0.985	405	0%	235	53.2%	-	-	benign(0.01)	tolerated(0.33)	neutral(0.025)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	433434	433434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006614.2	+1	reviewed	p.K956N	0.971	270	0%	148	18.2%	-	-	possibly_damaging(0.948)	tolerated(0.5)	neutral(0.401)	HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN6	27255	genome.wustl.edu	37	3	1320144	1320144	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014461.2	+1	reviewed	p.E136*	1.000	216	0%	162	22.8%	-	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1339620	1339620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014461.2	+1	reviewed	p.T236A	0.978	495	0%	216	23.6%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1371559	1371559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014461.2	+1	reviewed	p.A435D	0.982	303	0%	194	27.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1414088	1414088	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014461.2	+1	reviewed	p.F533C	0.988	451	0%	269	17.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
IL5RA	3568	genome.wustl.edu	37	3	3139847	3139847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000564.3	-1	reviewed	p.E165D	0.699	527	0%	455	29%	-	-	benign(0.005)	tolerated(0.53)	neutral(0.007)	HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_Fibronectin type III
LRRN1	57633	genome.wustl.edu	37	3	3886911	3886911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020873.5	+1	validated	p.L196I	1.000	190	0%	139	25.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SSF52058
LRRN1	57633	genome.wustl.edu	37	3	3887915	3887915	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020873.5	+1	validated	p.Y530	0.564	103	0%	68	25%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SETMAR	6419	genome.wustl.edu	37	3	4358564	4358564	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006515.3	+1	validated	p.I563	0.942	58	0%	46	28.3%	-	-	-	-	-	HMMPfam_Transposase_1
SETMAR	6419	genome.wustl.edu	37	3	4358755	4358755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006515.3	+1	validated	p.F627C	0.818	261	0%	196	51.5%	-	-	unknown(0)	deleterious(0)	-	NULL
ITPR1	3708	genome.wustl.edu	37	3	4732935	4732935	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.H1303	0.906	343	0.3%	281	12.1%	-	-	-	-	-	HMMPfam_RYDR_ITPR
ITPR1	3708	genome.wustl.edu	37	3	4741615	4741615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.T1500M	1.000	226	0%	211	28%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ARL8B	55207	genome.wustl.edu	37	3	5216089	5216089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018184.2	+1	validated	p.K167N	1.000	303	0%	147	27.2%	-	-	possibly_damaging(0.813)	tolerated(0.3)	neutral(0.336)	HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRM7	2917	genome.wustl.edu	37	3	7188172	7188172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.E185K	1.000	199	0%	147	25.2%	-	-	probably_damaging(0.999)	tolerated(0.43)	deleterious(0.504)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM7	2917	genome.wustl.edu	37	3	7620681	7620681	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.L696	0.996	428	0%	349	22.3%	-	-	-	-	-	HMMPfam_7tm_3
GRM7	2917	genome.wustl.edu	37	3	7721907	7721907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.R875G	0.691	95	0%	76	23.7%	-	-	benign(0.013)	tolerated(0.31)	neutral(0.028)	NULL
SRGAP3	9901	genome.wustl.edu	37	3	9034622	9034622	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014850.2	-1	validated	p.I842	0.963	161	0%	122	63.9%	-	-	-	-	-	superfamily_SH3-domain
SRGAP3	9901	genome.wustl.edu	37	3	9094902	9094902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014850.2	-1	validated	p.K378E	1.000	143	0%	174	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD5	55209	genome.wustl.edu	37	3	9476086	9476086	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.P82	1.000	338	0%	199	52.8%	-	-	-	-	-	NULL
SETD5	55209	genome.wustl.edu	37	3	9482160	9482160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.Q196H	0.998	191	0%	131	78.6%	-	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
SETD5	55209	genome.wustl.edu	37	3	9483370	9483370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.R302C	1.000	327	0%	268	53.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
SETD5	55209	genome.wustl.edu	37	3	9486866	9486866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.R441H	1.000	479	0.2%	243	22.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD5	55209	genome.wustl.edu	37	3	9515081	9515081	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399686	+1	known	p.S787G	0.992	403	0%	311	54%	-	-	-	-	-	NULL
BRPF1	7862	genome.wustl.edu	37	3	9785967	9785967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003694.1	+1	reviewed	p.L899M	1.000	59	0%	31	29%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CAMK1	8536	genome.wustl.edu	37	3	9801418	9801418	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421120	-1	known	p.A101T	0.986	174	0%	146	21.2%	-	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TTLL3	26140	genome.wustl.edu	37	3	9857781	9857781	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310252	+1	known	p.P26T	0.127	128	0%	112	25%	-	-	-	-	-	NULL
FANCD2	2177	genome.wustl.edu	37	3	10114940	10114940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033084.3	+1	reviewed	p.R870K	0.434	114	0%	43	44.2%	-	-	benign(0)	tolerated(1)	-	NULL
FANCD2	2177	genome.wustl.edu	37	3	10136907	10136907	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033084.3	+1	reviewed	p.E1329	1.000	163	0%	132	12.9%	-	-	-	-	-	NULL
IRAK2	3656	genome.wustl.edu	37	3	10255195	10255195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001570.3	+1	reviewed	p.E251K	0.005	352	0%	248	33.1%	-	-	benign(0.005)	tolerated(1)	-	superfamily_Kinase_like,HMMPfam_Pkinase
SEC13	6396	genome.wustl.edu	37	3	10346828	10346828	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183352.1	-1	reviewed	p.D199	0.855	360	0%	299	28.8%	-	-	-	-	-	superfamily_WD40_like
SLC6A11	6538	genome.wustl.edu	37	3	10953795	10953795	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014229.1	+1	provisional	p.T304	0.565	324	0%	248	52.4%	-	-	-	-	-	HMMPfam_SNF
SLC6A1	6529	genome.wustl.edu	37	3	11058983	11058983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003042.3	+1	validated	p.T29I	1.000	93	0%	63	31.7%	-	-	benign(0.189)	deleterious(0)	neutral(0.462)	NULL
ATG7	10533	genome.wustl.edu	37	3	11468338	11468338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006395.2	+1	validated	p.H673N	1.000	353	0%	220	54.1%	-	-	possibly_damaging(0.513)	tolerated(0.15)	neutral(0.413)	superfamily_Activating enzymes of the ubiquitin-like proteins
SYN2	6854	genome.wustl.edu	37	3	12211364	12211364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426379	+1	known	p.L431P	0.994	104	0%	91	33%	-	-	unknown(0)	-	-	NULL
PPARG	5468	genome.wustl.edu	37	3	12447550	12447550	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015869.4	+1	reviewed	p.A263	0.958	256	0%	158	28.5%	-	-	-	-	-	superfamily_Nuclear receptor ligand-binding domain
PPARG	5468	genome.wustl.edu	37	3	12458305	12458305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015869.4	+1	reviewed	p.R308C	1.000	229	0%	176	53.4%	-	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	superfamily_Nuclear receptor ligand-binding domain
MKRN2	23609	genome.wustl.edu	37	3	12616467	12616467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014160.3	+1	provisional	p.Q273H	1.000	136	0%	122	59.8%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
RAF1	5894	genome.wustl.edu	37	3	12653551	12653551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002880.3	-1	reviewed	p.R73Q	1.000	175	0%	128	56.2%	-	-	probably_damaging(0.964)	tolerated(0.12)	deleterious(0.667)	HMMPfam_RBD,HMMSmart_SM00455,superfamily_Ubiquitin-like
TMEM40	55287	genome.wustl.edu	37	3	12785480	12785480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018306.2	-1	provisional	p.D74Y	0.757	400	0%	349	50.1%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
TMEM40	55287	genome.wustl.edu	37	3	12791316	12791316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018306.2	-1	provisional	p.S6P	0.001	397	0.3%	302	48.3%	-	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
SNORA7A	619563	genome.wustl.edu	37	3	12881874	12881874	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002582.1	-1	provisional	NULL	0.201	32	0%	28	39.3%	-	-	-	-	-	-
FBLN2	2199	genome.wustl.edu	37	3	13612869	13612869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004019.1	+1	reviewed	p.E338D	0.973	60	0%	60	33.3%	-	-	possibly_damaging(0.556)	deleterious(0)	deleterious(0.634)	NULL
FBLN2	2199	genome.wustl.edu	37	3	13679117	13679117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004019.1	+1	reviewed	p.R1132C	0.984	48	0%	62	25.8%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
SLC6A6	6533	genome.wustl.edu	37	3	14489314	14489314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134367.1	+1	validated	p.E197K	1.000	108	0%	132	53%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF
C3orf19	51244	genome.wustl.edu	37	3	14711446	14711446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016474.4	+1	validated	p.D320Y	0.998	65	0%	46	30.4%	-	-	probably_damaging(0.991)	tolerated(0.14)	deleterious(0.694)	NULL
C3orf19	51244	genome.wustl.edu	37	3	14712402	14712402	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016474.4	+1	validated	e11-1	1.000	49	0%	35	65.7%	-	-	-	-	-	-
C3orf19	51244	genome.wustl.edu	37	3	14712425	14712425	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016474.4	+1	validated	p.S376	0.983	71	0%	54	16.7%	-	-	-	-	-	NULL
FGD5	152273	genome.wustl.edu	37	3	14960337	14960337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152536.3	+1	validated	p.A1189V	0.996	241	0%	204	17.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
NR2C2	7182	genome.wustl.edu	37	3	15062323	15062323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003298.3	+1	validated	p.K166T	1.000	334	0%	248	27.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ZFYVE20	64145	genome.wustl.edu	37	3	15116032	15116032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022340.2	-1	validated	p.R538W	0.168	129	0%	121	49.6%	-	-	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	NULL
ZFYVE20	64145	genome.wustl.edu	37	3	15116413	15116413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022340.2	-1	validated	p.L411F	0.601	38	0%	57	21.1%	-	-	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
ZFYVE20	64145	genome.wustl.edu	37	3	15126514	15126514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022340.2	-1	validated	p.K143N	1.000	299	0%	190	32.1%	-	-	benign(0.185)	tolerated(0.11)	neutral(0.289)	NULL
ENSG00000221424	0	genome.wustl.edu	37	3	15175960	15175960	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408497	-1	novel	NULL	0.040	319	0%	183	28.4%	-	-	-	-	-	-
CAPN7	23473	genome.wustl.edu	37	3	15275477	15275477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014296.2	+1	reviewed	p.Q428R	1.000	255	0%	199	15.6%	-	-	benign(0.033)	tolerated(0.51)	neutral(0.010)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
METTL6	131965	genome.wustl.edu	37	3	15457066	15457066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383789	-1	known	p.R186C	0.013	14	0%	27	55.6%	-	-	possibly_damaging(0.535)	-	-	NULL
COLQ	8292	genome.wustl.edu	37	3	15507874	15507874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005677.3	-1	reviewed	p.P263L	0.859	54	0%	45	42.2%	-	-	probably_damaging(0.989)	-	-	HMMPfam_Collagen
BTD	686	genome.wustl.edu	37	3	15685951	15685951	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000060.2	+1	reviewed	p.T196	0.017	286	0%	189	27.5%	-	-	-	-	-	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
OXNAD1	92106	genome.wustl.edu	37	3	16343302	16343302	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138381.2	+1	validated	p.K201T	0.000	295	0%	170	32.4%	-	-	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMPfam_NAD_binding_1,superfamily_SSF52343
PLCL2	23228	genome.wustl.edu	37	3	17051893	17051893	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015184.5	+1	validated	p.S226*	1.000	53	0%	51	47.1%	-	-	-	-	-	HMMPfam_efhand_like,superfamily_SSF47473
TBC1D5	9779	genome.wustl.edu	37	3	17333441	17333441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134381.1	-1	validated	p.F397L	0.841	297	0%	181	17.1%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D5	9779	genome.wustl.edu	37	3	17333465	17333465	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134381.1	-1	validated	p.L389	0.539	267	0%	162	33.3%	-	-	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
SATB1	6304	genome.wustl.edu	37	3	18428048	18428048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131010.1	-1	validated	p.S421Y	1.000	257	0%	218	54.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CUT
SATB1	6304	genome.wustl.edu	37	3	18458517	18458517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131010.1	-1	validated	p.Y89D	0.996	223	0%	158	36.1%	-	-	benign(0.01)	tolerated(0.18)	neutral(0.057)	NULL
KCNH8	131096	genome.wustl.edu	37	3	19295273	19295273	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144633.2	+1	reviewed	p.K68	1.000	360	0%	270	14.1%	-	-	-	-	-	HMMPfam_PAS,superfamily_SSF55785
EFHB	151651	genome.wustl.edu	37	3	19929950	19929950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144715.3	-1	validated	p.R640K	0.806	130	0%	82	23.2%	-	-	benign(0.005)	tolerated(0.41)	neutral(0.015)	superfamily_EF-hand
EFHB	151651	genome.wustl.edu	37	3	19940961	19940961	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144715.3	-1	validated	p.E489*	1.000	304	0%	152	44.7%	-	-	-	-	-	NULL
SGOL1	151648	genome.wustl.edu	37	3	20216354	20216354	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012410.2	-1	provisional	p.F223	0.000	372	0.3%	241	12.9%	-	-	-	-	-	NULL
SGOL1	151648	genome.wustl.edu	37	3	20225490	20225490	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012410.2	-1	provisional	p.S10	0.992	195	0%	160	28.1%	-	-	-	-	-	NULL
RARB	5915	genome.wustl.edu	37	3	25542761	25542761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000965.3	+1	reviewed	p.R132Q	1.000	278	0%	214	29%	-	-	benign(0.28)	tolerated(0.77)	neutral(0.087)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_Str_ncl_receptor,superfamily_SSF57716
TOP2B	7155	genome.wustl.edu	37	3	25668686	25668686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001068.2	-1	reviewed	p.I665V	1.000	178	0%	111	27.9%	-	-	probably_damaging(0.993)	tolerated(0.05)	deleterious(0.795)	HMMSmart_TOP2c,superfamily_Topo_IIA_cen
NEK10	152110	genome.wustl.edu	37	3	27183033	27183033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396636	-1	known	p.Q1027H	1.000	301	0%	216	56%	-	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
NEK10	152110	genome.wustl.edu	37	3	27203958	27203958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396636	-1	known	p.D1002Y	1.000	118	0%	109	22.9%	-	-	benign(0.085)	deleterious(0.01)	neutral(0.412)	NULL
NEK10	152110	genome.wustl.edu	37	3	27387666	27387666	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199347.2	-1	validated	p.T58	0.992	203	0%	157	21.7%	-	-	-	-	-	NULL
AZI2	64343	genome.wustl.edu	37	3	28382090	28382090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022461.3	-1	validated	p.D7N	1.000	214	0%	168	20.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
STT3B	201595	genome.wustl.edu	37	3	31666477	31666477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178862.1	+1	provisional	p.R600Q	1.000	442	0%	254	49.6%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_STT3
STT3B	201595	genome.wustl.edu	37	3	31667621	31667621	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178862.1	+1	provisional	e13+2	1.000	340	0%	256	17.6%	-	-	-	-	-	-
OSBPL10	114884	genome.wustl.edu	37	3	31725315	31725315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017784.4	-1	reviewed	p.E513K	0.001	251	0%	224	25.4%	-	-	benign(0.122)	tolerated(0.28)	neutral(0.042)	HMMPfam_Oxysterol_BP
GPD1L	23171	genome.wustl.edu	37	3	32188173	32188173	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015141.3	+1	validated	p.R189*	1.000	284	0%	244	17.2%	-	-	-	-	-	superfamily_NAD(P)-bd
GPD1L	23171	genome.wustl.edu	37	3	32207308	32207308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015141.3	+1	validated	p.F321Y	1.000	610	0%	455	25.3%	-	-	benign(0.042)	tolerated(0.21)	neutral(0.046)	HMMPfam_NAD_Gly3P_dh_C,superfamily_6DGDH_C_like
CLASP2	23122	genome.wustl.edu	37	3	33592749	33592749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015097.1	-1	validated	p.R1050W	1.000	191	0%	152	23%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CLASP2	23122	genome.wustl.edu	37	3	33614616	33614616	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015097.1	-1	validated	p.N895	1.000	238	0%	189	23.3%	-	-	-	-	-	superfamily_ARM repeat
ARPP21	10777	genome.wustl.edu	37	3	35724377	35724377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016300.4	+1	validated	p.S56F	1.000	433	0%	198	51%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARPP21	10777	genome.wustl.edu	37	3	35729248	35729248	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016300.4	+1	validated	p.Q93	1.000	145	0%	55	23.6%	-	-	-	-	-	NULL
ARPP21	10777	genome.wustl.edu	37	3	35756935	35756935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016300.4	+1	validated	p.V301A	1.000	541	0%	315	22.9%	-	-	benign(0.176)	tolerated(0.42)	neutral(0.030)	NULL
ENSG00000172995	0	genome.wustl.edu	37	3	35763221	35763221	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425289	+1	known	p.S146F	1.000	65	0%	64	43.8%	-	-	-	-	-	NULL
DCLK3	85443	genome.wustl.edu	37	3	36779158	36779158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033403.1	-1	validated	p.E331D	0.000	153	0%	171	25.1%	-	-	benign(0.091)	tolerated(0.12)	neutral(0.267)	superfamily_Kinase_like
DCLK3	85443	genome.wustl.edu	37	3	36779875	36779875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033403.1	-1	validated	p.Q92H	0.999	293	0%	246	23.6%	-	-	benign(0.422)	deleterious(0)	deleterious(0.582)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36872841	36872841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.E2151K	0.002	198	0%	171	26.3%	-	-	possibly_damaging(0.49)	deleterious(0.02)	deleterious(0.546)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36898545	36898545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.E296K	1.000	94	0%	102	10.8%	-	-	possibly_damaging(0.722)	tolerated(0.09)	deleterious(0.558)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36899238	36899238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.D65Y	1.000	155	0%	159	11.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36940651	36940651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429976	-1	known	p.D77Y	0.578	126	0%	76	19.7%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
EPM2AIP1	9852	genome.wustl.edu	37	3	37032768	37032768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014805.3	-1	reviewed	p.E601K	1.000	151	0%	100	27%	-	-	benign(0.002)	tolerated(0.48)	neutral(0.011)	NULL
MLH1	4292	genome.wustl.edu	37	3	37055968	37055968	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000249.3	+1	reviewed	p.K241N	1.000	171	0%	106	47.2%	-	-	benign(0.203)	tolerated(0.13)	neutral(0.272)	HMMPfam_DNA_mis_repair,superfamily_Ribosomal_S5_D2-typ_fold
GOLGA4	2803	genome.wustl.edu	37	3	37323570	37323570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.R95Q	1.000	189	0%	164	25.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37337597	37337597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.R234Q	0.992	263	0%	170	53.5%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_Prefoldin
GOLGA4	2803	genome.wustl.edu	37	3	37363258	37363258	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.E528*	1.000	254	0%	192	32.3%	-	-	-	-	-	NULL
ITGA9	3680	genome.wustl.edu	37	3	37818990	37818990	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002207.2	+1	reviewed	p.K883	1.000	605	0%	338	48.5%	-	-	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
CTDSPL	10217	genome.wustl.edu	37	3	38009355	38009355	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416688	+1	known	p.R45*	0.988	304	0%	246	54.9%	-	-	-	-	-	HMMPfam_NIF,superfamily_HAD-like
PLCD1	5333	genome.wustl.edu	37	3	38065845	38065845	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130964.1	-1	validated	p.L27R	1.000	30	0%	30	26.7%	-	-	possibly_damaging(0.7)	tolerated(0.21)	neutral(0.295)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38087072	38087072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007337.2	+1	reviewed	p.E150D	0.006	139	0%	128	28.1%	-	-	benign(0.006)	tolerated(0.71)	neutral(0.002)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38139080	38139080	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007337.2	+1	reviewed	p.I839	0.395	158	0%	125	11.2%	-	-	-	-	-	NULL
ACAA1	30	genome.wustl.edu	37	3	38167343	38167343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001607.3	-1	reviewed	p.E343K	1.000	129	0%	97	30.9%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Thiolase_C,superfamily_Thiolase-like
SCN5A	6331	genome.wustl.edu	37	3	38592883	38592883	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.I1660	1.000	433	0%	282	52.5%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN5A	6331	genome.wustl.edu	37	3	38597183	38597183	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.G1502	0.989	457	0.2%	369	26.6%	-	-	-	-	-	NULL
SCN5A	6331	genome.wustl.edu	37	3	38601709	38601709	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.E1392*	0.744	332	0%	240	53.3%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN5A	6331	genome.wustl.edu	37	3	38645496	38645496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.R533C	1.000	138	0%	130	22.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCN11A	11280	genome.wustl.edu	37	3	38888791	38888791	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014139.2	-1	validated	p.I1590	0.995	353	0%	238	10.5%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GORASP1	64689	genome.wustl.edu	37	3	39139804	39139804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031899.2	-1	reviewed	p.A416T	0.083	108	0%	93	19.4%	-	-	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	NULL
CSRNP1	64651	genome.wustl.edu	37	3	39186531	39186531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033027.3	-1	reviewed	p.R141H	0.513	95	2.1%	87	44.8%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
XIRP1	165904	genome.wustl.edu	37	3	39225637	39225637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.T1767I	0.032	391	0%	388	53.6%	-	-	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	NULL
XIRP1	165904	genome.wustl.edu	37	3	39230600	39230600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.A113T	0.044	63	0%	76	44.7%	-	-	benign(0.174)	tolerated(0.38)	neutral(0.034)	NULL
CX3CR1	1524	genome.wustl.edu	37	3	39307326	39307326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001337.3	-1	reviewed	p.K225N	0.997	214	0%	179	54.2%	-	-	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCR8	1237	genome.wustl.edu	37	3	39374678	39374678	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005201.3	+1	reviewed	p.E286*	0.030	254	0%	230	13.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYRIP	25924	genome.wustl.edu	37	3	40231856	40231856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015460.2	+1	validated	p.R523W	0.060	48	0%	43	44.2%	-	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
EIF1B	10289	genome.wustl.edu	37	3	40352547	40352547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005875.2	+1	validated	p.K65N	1.000	126	0%	61	31.1%	-	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	HMMPfam_SUI1,superfamily_eIF1-like
ENTPD3	956	genome.wustl.edu	37	3	40453313	40453313	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001248.2	+1	validated	p.I99	1.000	181	0%	147	28.6%	-	-	-	-	-	HMMPfam_GDA1_CD39
ZNF619	285267	genome.wustl.edu	37	3	40529864	40529864	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026746.2	+1	validated	NULL	0.009	38	0%	40	30%	-	-	-	-	-	-
CTNNB1	1499	genome.wustl.edu	37	3	41277268	41277268	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.I579	1.000	295	0%	254	13.8%	-	-	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
ULK4	54986	genome.wustl.edu	37	3	41959986	41959986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017886.2	-1	validated	p.K230N	1.000	147	0%	104	59.6%	-	-	benign(0.006)	tolerated(0.37)	neutral(0.019)	superfamily_Kinase_like,HMMPfam_Pkinase
ULK4	54986	genome.wustl.edu	37	3	41961287	41961287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017886.2	-1	validated	p.E189*	1.000	209	0%	130	46.2%	-	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
TRAK1	22906	genome.wustl.edu	37	3	42242381	42242381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042646.1	+1	validated	p.S421Y	0.986	192	0%	153	28.1%	-	-	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	NULL
VIPR1	7433	genome.wustl.edu	37	3	42576569	42576569	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004624.3	+1	validated	p.V371	1.000	427	0%	307	53.1%	-	-	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
NKTR	4820	genome.wustl.edu	37	3	42679208	42679208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005385.3	+1	reviewed	p.S671L	0.963	194	0%	99	17.2%	-	-	unknown(0)	deleterious(0)	-	NULL
NKTR	4820	genome.wustl.edu	37	3	42679747	42679747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005385.3	+1	reviewed	p.R851W	0.023	111	0%	44	47.7%	-	-	unknown(0)	tolerated(1)	-	NULL
NKTR	4820	genome.wustl.edu	37	3	42681013	42681013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005385.3	+1	reviewed	p.R1273W	0.996	215	0%	131	22.1%	-	-	unknown(0)	deleterious(0)	-	NULL
HHATL	57467	genome.wustl.edu	37	3	42735116	42735116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020707.3	-1	validated	p.R414Q	0.001	186	0%	138	15.2%	-	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	HMMPfam_MBOAT
HHATL	57467	genome.wustl.edu	37	3	42739081	42739081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020707.3	-1	validated	p.D262N	1.000	153	0%	125	14.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_MBOAT
HHATL	57467	genome.wustl.edu	37	3	42740545	42740545	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020707.3	-1	validated	p.L89	1.000	144	0%	93	31.2%	-	-	-	-	-	NULL
HHATL	57467	genome.wustl.edu	37	3	42742307	42742307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020707.3	-1	validated	p.K4N	1.000	35	0%	29	13.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CYP8B1	1582	genome.wustl.edu	37	3	42916580	42916580	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004391.2	-1	reviewed	p.S243	0.000	17	0%	25	72%	-	-	-	-	-	superfamily_Cytochrome P450
ZNF662	389114	genome.wustl.edu	37	3	42956031	42956031	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134656.1	+1	validated	p.E182*	0.001	369	0%	181	55.2%	-	-	-	-	-	NULL
C3orf39	84892	genome.wustl.edu	37	3	43122630	43122630	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032806.4	-1	provisional	p.G98	1.000	81	0%	69	31.9%	-	-	-	-	-	NULL
ANO10	55129	genome.wustl.edu	37	3	43596803	43596803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018075.3	-1	validated	p.F545L	0.922	292	0%	181	23.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF590
ABHD5	51099	genome.wustl.edu	37	3	43759941	43759941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016006.4	+1	reviewed	p.L323I	1.000	328	0%	217	53.5%	-	-	benign(0.024)	deleterious(0.02)	neutral(0.384)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
C3orf77	375337	genome.wustl.edu	37	3	44284851	44284851	+	Nonsense_Mutation	SNP	G	G	T	rs181167027	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.E285*	0.949	123	0%	73	52.1%	-	-	-	-	-	NULL
C3orf77	375337	genome.wustl.edu	37	3	44303950	44303950	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.E999*	1.000	121	0.8%	89	27%	-	-	-	-	-	NULL
C3orf77	375337	genome.wustl.edu	37	3	44308575	44308575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.P1036H	0.005	273	0%	132	28%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44351337	44351337	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.K1387	0.963	240	0%	137	24.8%	-	-	-	-	-	NULL
C3orf77	375337	genome.wustl.edu	37	3	44369851	44369851	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.I1595	1.000	216	0%	152	22.4%	-	-	-	-	-	NULL
C3orf77	375337	genome.wustl.edu	37	3	44373458	44373458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.E1678D	1.000	368	0%	238	24.4%	-	-	possibly_damaging(0.891)	tolerated(0.13)	deleterious(0.603)	NULL
ZNF445	353274	genome.wustl.edu	37	3	44489291	44489291	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181489.5	-1	validated	p.P624	0.318	129	0%	126	57.1%	-	-	-	-	-	superfamily_SSF57667
ZNF445	353274	genome.wustl.edu	37	3	44489522	44489522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181489.5	-1	validated	p.E547D	1.000	149	0%	132	59.8%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF445	353274	genome.wustl.edu	37	3	44490061	44490061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181489.5	-1	validated	p.P368S	0.000	170	0%	149	27.5%	-	-	benign(0.001)	tolerated(1)	-	NULL
ZNF852	285346	genome.wustl.edu	37	3	44541754	44541754	+	Missense_Mutation	SNP	G	G	A	rs189732117	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436261	-1	known	p.S172L	0.862	79	0%	78	15.4%	-	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF852	285346	genome.wustl.edu	37	3	44541791	44541791	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436261	-1	known	p.R160*	0.009	77	0%	69	63.8%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF197	10168	genome.wustl.edu	37	3	44672589	44672589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006991.3	+1	reviewed	p.Q142H	0.078	171	0%	145	12.4%	-	-	possibly_damaging(0.884)	tolerated(0.26)	neutral(0.379)	HMMSmart_SM00431
ZNF35	7584	genome.wustl.edu	37	3	44701168	44701168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003420.3	+1	validated	p.R438I	1.000	197	0%	205	36.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF502	91392	genome.wustl.edu	37	3	44762977	44762977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134440.1	+1	validated	p.R223Q	0.000	156	0%	164	29.3%	-	-	benign(0.002)	tolerated(0.49)	neutral(0.011)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KIF15	56992	genome.wustl.edu	37	3	44844408	44844408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020242.2	+1	validated	p.E538*	0.998	237	0.4%	131	48.9%	-	-	-	-	-	NULL
CDCP1	64866	genome.wustl.edu	37	3	45153728	45153728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022842.3	-1	reviewed	p.D168N	0.025	164	0%	166	56.6%	-	-	benign(0.024)	tolerated(0.6)	neutral(0.005)	NULL
LARS2	23395	genome.wustl.edu	37	3	45530260	45530260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015340.3	+1	reviewed	p.E399*	1.000	179	0%	138	21.7%	-	-	-	-	-	superfamily_ValRS_IleRS_edit,superfamily_SSF52374
SLC6A20	54716	genome.wustl.edu	37	3	45812900	45812900	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020208.3	-1	reviewed	p.I248	1.000	359	0%	305	49.8%	-	-	-	-	-	HMMPfam_SNF
CCR9	10803	genome.wustl.edu	37	3	45942328	45942328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031200.1	+1	reviewed	p.D16E	0.003	156	0%	126	27.8%	-	-	unknown(0)	-	-	superfamily_Family A G protein-coupled receptor-like
FYCO1	79443	genome.wustl.edu	37	3	45965194	45965194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024513.2	-1	validated	p.R1439C	0.986	458	0.2%	319	22.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Supernatant protein factor (SPF) C-terminal domain
FYCO1	79443	genome.wustl.edu	37	3	46003869	46003869	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024513.2	-1	validated	p.L1095	0.000	650	0%	426	26.1%	-	-	-	-	-	NULL
FYCO1	79443	genome.wustl.edu	37	3	46023093	46023093	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024513.2	-1	validated	p.K44T	1.000	367	0%	289	34.3%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CCR3	1232	genome.wustl.edu	37	3	46307175	46307175	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001837.3	+1	reviewed	p.E176*	0.000	201	0%	198	57.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LTF	4057	genome.wustl.edu	37	3	46497462	46497462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002343.2	-1	reviewed	p.R108Q	0.007	97	0%	121	52.9%	-	-	benign(0.007)	tolerated(1)	-	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
TDGF1	6997	genome.wustl.edu	37	3	46620615	46620615	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003212.3	+1	reviewed	p.V22	0.000	750	0%	500	32.2%	-	-	-	-	-	NULL
PRSS42	339906	genome.wustl.edu	37	3	46873503	46873503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182702.1	-1	provisional	p.L219F	0.877	291	0%	260	26.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
NBEAL2	23218	genome.wustl.edu	37	3	47040542	47040542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	p.E1160K	0.983	69	0%	98	26.5%	-	-	possibly_damaging(0.664)	deleterious(0.01)	deleterious(0.641)	NULL
SETD2	29072	genome.wustl.edu	37	3	47098428	47098428	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.V2282	0.981	204	0%	201	19.4%	-	-	-	-	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47162400	47162400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.E1242D	0.049	127	0%	85	49.4%	-	-	benign(0)	tolerated(1)	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47164831	47164831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.R432H	1.000	218	0%	196	49%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF9	64147	genome.wustl.edu	37	3	47282434	47282434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134878.1	-1	validated	p.R594Q	1.000	356	0%	221	23.5%	-	-	probably_damaging(0.969)	tolerated(0.43)	neutral(0.425)	NULL
CSPG5	10675	genome.wustl.edu	37	3	47604225	47604225	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006574.3	-1	validated	p.I495	1.000	165	0%	130	20.8%	-	-	-	-	-	HMMPfam_Neural_ProG_Cyt
CSPG5	10675	genome.wustl.edu	37	3	47618378	47618378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006574.3	-1	validated	p.Y380H	1.000	54	0%	50	26%	-	-	benign(0.025)	deleterious(0)	neutral(0.446)	HMMSmart_EGF
SMARCC1	6599	genome.wustl.edu	37	3	47703966	47703966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003074.3	-1	validated	p.E672D	1.000	195	0%	158	15.2%	-	-	possibly_damaging(0.919)	tolerated(0.15)	deleterious(0.611)	NULL
SMARCC1	6599	genome.wustl.edu	37	3	47718130	47718130	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003074.3	-1	validated	p.R572*	1.000	136	0%	89	52.8%	-	-	-	-	-	NULL
SMARCC1	6599	genome.wustl.edu	37	3	47734776	47734776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003074.3	-1	validated	p.D394Y	1.000	229	0%	192	27.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMARCC1	6599	genome.wustl.edu	37	3	47777531	47777531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003074.3	-1	validated	p.R190Q	1.000	440	0%	283	54.4%	-	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	superfamily_BRCT
DHX30	22907	genome.wustl.edu	37	3	47888799	47888799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138615.2	+1	reviewed	p.T656A	0.995	195	0.5%	200	30%	-	-	benign(0.006)	tolerated(1)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP4	4134	genome.wustl.edu	37	3	48040229	48040229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002375.4	-1	reviewed	p.T41I	1.000	418	0%	301	50.2%	-	-	unknown(0)	deleterious(0)	-	NULL
CDC25A	993	genome.wustl.edu	37	3	48200536	48200536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001789.2	-1	reviewed	p.E492K	0.999	204	0%	187	29.4%	-	-	benign(0.062)	deleterious(0.01)	neutral(0.410)	superfamily_Rhodanese/Cell cycle control phosphatase
CDC25A	993	genome.wustl.edu	37	3	48205857	48205857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001789.2	-1	reviewed	p.D421G	0.814	220	0%	197	50.8%	-	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
PLXNB1	5364	genome.wustl.edu	37	3	48456734	48456734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130082.1	-1	validated	p.R1273C	0.058	76	0%	57	22.8%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
CELSR3	1951	genome.wustl.edu	37	3	48696466	48696466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.D1201G	1.000	251	0%	225	22.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CELSR3	1951	genome.wustl.edu	37	3	48696750	48696750	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.I1106	0.008	169	0%	157	51%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CELSR3	1951	genome.wustl.edu	37	3	48696753	48696753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.Q1105H	1.000	163	0%	153	19.6%	-	-	probably_damaging(0.999)	tolerated(0.42)	deleterious(0.504)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
IP6K2	51447	genome.wustl.edu	37	3	48732631	48732631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005909.1	-1	reviewed	p.V32M	1.000	139	0%	146	21.2%	-	-	probably_damaging(0.999)	tolerated(0.43)	deleterious(0.504)	superfamily_SAICAR synthase-like
WDR6	11180	genome.wustl.edu	37	3	49050375	49050375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018031.3	+1	reviewed	p.A500T	0.003	120	0%	127	25.2%	-	-	benign(0.126)	tolerated(0.57)	neutral(0.017)	superfamily_WD40 repeat-like
WDR6	11180	genome.wustl.edu	37	3	49050798	49050798	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018031.3	+1	reviewed	p.R641*	1.000	115	0%	123	53.7%	-	-	-	-	-	superfamily_WD40 repeat-like
IMPDH2	3615	genome.wustl.edu	37	3	49065166	49065166	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000884.2	-1	reviewed	p.E170*	1.000	105	0%	63	36.5%	-	-	-	-	-	HMMPfam_CBS,HMMPfam_IMPDH,superfamily_SSF51412
QARS	5859	genome.wustl.edu	37	3	49137517	49137517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005051.1	-1	reviewed	p.R391H	0.999	270	0%	258	28.7%	-	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
LAMB2	3913	genome.wustl.edu	37	3	49160170	49160170	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.E1514*	1.000	151	0%	125	52%	-	-	-	-	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49167814	49167814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.D359N	1.000	132	0%	113	60.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
KLHDC8B	200942	genome.wustl.edu	37	3	49211826	49211826	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173546.1	+1	provisional	p.I177	1.000	97	0%	79	26.6%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
CCDC36	339834	genome.wustl.edu	37	3	49292916	49292916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135197.1	+1	validated	p.R209I	0.000	342	0.3%	237	49.8%	-	-	possibly_damaging(0.861)	tolerated(0.13)	deleterious(0.586)	NULL
CCDC36	339834	genome.wustl.edu	37	3	49293879	49293879	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135197.1	+1	validated	p.E317*	0.000	72	0%	80	58.8%	-	-	-	-	-	NULL
USP4	7375	genome.wustl.edu	37	3	49316319	49316319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003363.3	-1	validated	p.K887N	1.000	390	0.3%	302	48.3%	-	-	probably_damaging(0.968)	deleterious(0.03)	deleterious(0.774)	HMMPfam_UCH,superfamily_Cysteine proteinases
MST1	4485	genome.wustl.edu	37	3	49722069	49722069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020998.3	-1	reviewed	p.R597H	0.982	208	0%	148	56.1%	-	-	benign(0.014)	tolerated(0.84)	neutral(0.001)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
UBA7	7318	genome.wustl.edu	37	3	49847768	49847768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003335.2	-1	reviewed	p.E521K	1.000	97	0%	109	29.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ThiF,superfamily_MoeB
UBA7	7318	genome.wustl.edu	37	3	49851200	49851200	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003335.2	-1	reviewed	p.S7	0.000	203	0%	143	18.9%	-	-	-	-	-	NULL
MST1R	4486	genome.wustl.edu	37	3	49940302	49940302	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002447.2	-1	validated	p.I247	0.257	38	0%	54	27.8%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
RBM6	10180	genome.wustl.edu	37	3	50005283	50005283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005777.2	+1	validated	p.S142Y	0.169	254	0%	159	34%	-	-	benign(0.347)	deleterious(0.01)	deleterious(0.516)	NULL
SEMA3F	6405	genome.wustl.edu	37	3	50211681	50211681	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004186.3	+1	validated	p.F118	1.000	98	0%	95	29.5%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SLC38A3	10991	genome.wustl.edu	37	3	50257397	50257397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006841.4	+1	validated	p.R464I	0.013	498	0%	456	21.3%	-	-	-	-	-	HMMPfam_Aa_trans
SEMA3B	7869	genome.wustl.edu	37	3	50311372	50311372	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004636.2	+1	reviewed	p.A340	0.843	69	0%	60	50%	-	-	benign(0.008)	tolerated(0.14)	neutral(0.249)	NULL
ZMYND10	51364	genome.wustl.edu	37	3	50379568	50379568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015896.2	-1	validated	p.R293W	1.000	223	0%	186	29%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NPRL2	10641	genome.wustl.edu	37	3	50386911	50386911	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006545.4	-1	validated	p.F118	0.997	156	0%	146	55.5%	-	-	-	-	-	HMMPfam_NPR2
C3orf18	51161	genome.wustl.edu	37	3	50599193	50599193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422619	-1	known	p.L22I	0.195	234	0%	166	54.2%	-	-	unknown(0)	tolerated(0.13)	-	NULL
DOCK3	1795	genome.wustl.edu	37	3	51387782	51387782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.R1356W	0.998	466	0%	304	12.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPRBP	9730	genome.wustl.edu	37	3	51450502	51450502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014703.2	-1	validated	p.R1299Q	1.000	400	0%	314	13.7%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_WD40 repeat-like
ABHD14B	84836	genome.wustl.edu	37	3	52003622	52003622	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032750.2	-1	validated	e3-1	1.000	56	0%	53	18.9%	-	-	-	-	-	-
ACY1	95	genome.wustl.edu	37	3	52021404	52021404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000666.1	+1	reviewed	p.N263D	1.000	107	0%	129	47.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer,superfamily_SSF53187
TWF2	11344	genome.wustl.edu	37	3	52269097	52269097	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007284.3	-1	reviewed	p.F17	1.000	266	0%	220	53.6%	-	-	-	-	-	HMMPfam_Cofilin_ADF,HMMSmart_ADF,superfamily_SSF55753
PPM1M	132160	genome.wustl.edu	37	3	52282671	52282671	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457454	+1	known	p.R206K	0.997	190	0%	158	48.1%	-	-	-	-	-	superfamily_Protein serine/threonine phosphatase 2C catalytic domain
WDR82	80335	genome.wustl.edu	37	3	52300974	52300974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025222.3	-1	validated	p.S107I	1.000	492	0%	340	29.1%	-	-	benign(0.004)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GLYCTK	132158	genome.wustl.edu	37	3	52324415	52324415	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145262.3	+1	reviewed	p.L19	0.003	9	0.000	15	0.333	-	-	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52402832	52402832	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.F1947	0.968	115	0%	140	53.6%	-	-	-	-	-	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH1	25981	genome.wustl.edu	37	3	52428588	52428588	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.S3578	0.116	276	0%	242	24%	-	-	-	-	-	HMMPfam_Dynein_heavy
SEMA3G	56920	genome.wustl.edu	37	3	52469820	52469820	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020163.1	-1	provisional	p.F716	0.001	89	1.1%	122	29.5%	-	-	-	-	-	NULL
NISCH	11188	genome.wustl.edu	37	3	52522122	52522122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007184.3	+1	validated	p.A872T	0.825	40	0%	42	19%	-	-	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
GNL3	26354	genome.wustl.edu	37	3	52727694	52727694	+	Silent	SNP	C	C	T	rs181190077	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014366.4	+1	validated	p.S457	0.000	449	0%	365	56.7%	-	-	-	-	-	NULL
ITIH3	3699	genome.wustl.edu	37	3	52831908	52831908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002217.3	+1	validated	p.L209M	0.997	261	0%	218	50%	-	-	benign(0.014)	tolerated(0.16)	neutral(0.060)	NULL
ITIH4	3700	genome.wustl.edu	37	3	52850966	52850966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002218.4	-1	reviewed	p.V802A	0.179	145	0%	163	57.7%	-	-	possibly_damaging(0.61)	tolerated(0.08)	deleterious(0.511)	HMMPfam_ITI_HC_C
PRKCD	5580	genome.wustl.edu	37	3	53213770	53213770	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006254.3	+1	reviewed	p.N98T	1.000	98	0%	104	27.9%	-	-	benign(0.029)	tolerated(0.18)	neutral(0.058)	HMMSmart_C2,superfamily_C2_CaLB
TKT	7086	genome.wustl.edu	37	3	53259823	53259823	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001064.2	-1	validated	p.I607	0.847	173	0%	153	31.4%	-	-	-	-	-	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
TKT	7086	genome.wustl.edu	37	3	53269001	53269001	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001064.2	-1	validated	p.F209	0.970	74	0%	70	44.3%	-	-	-	-	-	HMMPfam_Transketolase_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
CACNA1D	776	genome.wustl.edu	37	3	53779689	53779689	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.I1035	0.890	400	0%	326	46.3%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53781413	53781413	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.F1104	0.971	330	0%	244	12.7%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53783313	53783313	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.I1131	0.852	343	0%	277	53.1%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53810928	53810928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.R1531H	0.992	300	0%	268	51.5%	-	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
CACNA1D	776	genome.wustl.edu	37	3	53844173	53844173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.G2034S	0.999	71	0%	65	13.8%	-	-	benign(0.007)	tolerated(0.95)	-	NULL
CHDH	55349	genome.wustl.edu	37	3	53855757	53855757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018397.3	-1	validated	p.S301Y	1.000	107	0%	99	20.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_GMC_oxred_N,PatternScan_GMC_OXRED_2,superfamily_SSF51905
ACTR8	93973	genome.wustl.edu	37	3	53911280	53911280	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486794	-1	known	p.R14Q	0.655	214	0%	148	25.7%	-	-	-	-	-	HMMSmart_SM00268,superfamily_Actin-like ATPase domain
CACNA2D3	55799	genome.wustl.edu	37	3	54604067	54604067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	p.A275V	1.000	336	0.3%	350	14.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CACNA2D3	55799	genome.wustl.edu	37	3	54919572	54919572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	p.A672V	1.000	389	0%	351	25.6%	-	-	probably_damaging(1)	tolerated(0.41)	deleterious(0.515)	NULL
ERC2	26059	genome.wustl.edu	37	3	56026216	56026216	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000492584	-1	known	p.S359L	0.542	368	0%	300	26.7%	-	-	-	-	-	HMMPfam_Cast
ERC2	26059	genome.wustl.edu	37	3	56041273	56041273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015576.1	-1	validated	p.S666Y	1.000	592	0%	384	20.3%	-	-	possibly_damaging(0.905)	deleterious(0.03)	deleterious(0.724)	HMMPfam_Cast
ERC2	26059	genome.wustl.edu	37	3	56468429	56468429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015576.1	-1	validated	p.R203W	0.998	243	0%	179	17.9%	-	-	benign(0.083)	deleterious(0)	neutral(0.451)	HMMPfam_Cast
CCDC66	285331	genome.wustl.edu	37	3	56653471	56653471	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141947.1	+1	validated	p.R851*	0.994	172	0%	146	24.7%	-	-	-	-	-	NULL
FAM208A	23272	genome.wustl.edu	37	3	56658514	56658514	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112736.1	-1	validated	p.S1492	0.016	404	0%	264	51.9%	-	-	-	-	-	NULL
FAM208A	23272	genome.wustl.edu	37	3	56705702	56705702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112736.1	-1	validated	p.E166K	1.000	320	0%	233	14.2%	-	-	possibly_damaging(0.942)	deleterious(0.05)	deleterious(0.732)	NULL
ARHGEF3	50650	genome.wustl.edu	37	3	56763546	56763546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128615.1	-1	reviewed	p.R477C	1.000	361	0%	346	74.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
IL17RD	54756	genome.wustl.edu	37	3	57139957	57139957	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017563.3	-1	validated	p.F225	0.997	194	0%	186	38.7%	-	-	-	-	-	NULL
APPL1	26060	genome.wustl.edu	37	3	57283566	57283566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012096.2	+1	reviewed	p.D348N	1.000	263	0%	206	24.3%	-	-	possibly_damaging(0.62)	tolerated(0.64)	neutral(0.219)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ASB14	142686	genome.wustl.edu	37	3	57312748	57312748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142733.2	-1	reviewed	p.A199V	1.000	185	0%	200	15.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
DNAH12	201625	genome.wustl.edu	37	3	57327988	57327988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.R3034W	0.000	174	0%	145	46.2%	-	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57330426	57330426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.D2989G	1.000	165	0%	116	26.7%	-	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57335780	57335780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.R2925W	1.000	149	0%	152	54.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57343826	57343826	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000462199	-1	known	p.L474I	1.000	416	0%	245	44.5%	-	-	-	-	-	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57368516	57368516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.L2451I	1.000	336	0%	209	47.8%	-	-	benign(0.067)	tolerated(0.11)	neutral(0.276)	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57386114	57386114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.L2357M	0.993	182	0%	123	48%	-	-	benign(0.003)	tolerated(0.11)	neutral(0.272)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57487074	57487074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.D437Y	1.000	158	0%	62	54.8%	-	-	benign(0.077)	deleterious(0.03)	neutral(0.370)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57494906	57494906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.S168L	0.978	133	0%	117	46.2%	-	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
FAM116A	201627	genome.wustl.edu	37	3	57614592	57614592	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152678.2	-1	validated	p.Q547	1.000	455	0%	393	27.2%	-	-	-	-	-	HMMPfam_DUF1630
SLMAP	7871	genome.wustl.edu	37	3	57902863	57902863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416870	+1	known	p.S266L	1.000	176	0%	112	25%	-	-	unknown(0)	-	-	NULL
PDHB	5162	genome.wustl.edu	37	3	58416535	58416535	+	Silent	SNP	C	C	A	rs1126551	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000925.3	-1	reviewed	p.G146	0.135	149	0%	87	34.5%	-	-	-	-	-	HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
FHIT	2272	genome.wustl.edu	37	3	59999837	59999837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002012.2	-1	reviewed	p.D49Y	0.999	141	0%	147	27.9%	-	-	possibly_damaging(0.844)	deleterious(0)	deleterious(0.768)	HMMPfam_HIT,superfamily_HIT-like
PTPRG	5793	genome.wustl.edu	37	3	62229545	62229545	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002841.3	+1	reviewed	p.E814*	1.000	354	0%	255	11%	-	-	-	-	-	NULL
PTPRG	5793	genome.wustl.edu	37	3	62267268	62267268	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002841.3	+1	reviewed	p.R1266*	1.000	118	0.8%	89	64%	-	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
CADPS	8618	genome.wustl.edu	37	3	62459935	62459935	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000473635	-1	known	p.S117F	1.000	398	0%	276	47.1%	-	-	-	-	-	NULL
CADPS	8618	genome.wustl.edu	37	3	62535634	62535634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.K637R	1.000	191	0%	133	17.3%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	superfamily_PH domain-like
THOC7	80145	genome.wustl.edu	37	3	63824158	63824158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025075.2	-1	validated	p.R52H	1.000	215	0%	127	32.3%	-	-	unknown(0)	-	-	HMMPfam_THOC7
ADAMTS9	56999	genome.wustl.edu	37	3	64536612	64536612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182920.1	-1	reviewed	p.L1609V	0.000	136	0%	149	57.7%	-	-	possibly_damaging(0.637)	tolerated(0.55)	neutral(0.230)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MAGI1	9223	genome.wustl.edu	37	3	65367612	65367612	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033057.1	-1	reviewed	p.Q881*	1.000	275	0%	213	50.7%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
LRIG1	26018	genome.wustl.edu	37	3	66436411	66436411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015541.2	-1	validated	p.V595M	1.000	265	0%	230	51.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LRIG1	26018	genome.wustl.edu	37	3	66460598	66460598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015541.2	-1	validated	p.R297H	0.215	178	0%	166	51.2%	-	-	benign(0.184)	tolerated(0.06)	neutral(0.340)	HMMSmart_SM00369,superfamily_L domain-like
KBTBD8	84541	genome.wustl.edu	37	3	67049548	67049548	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032505.2	+1	validated	p.E28*	1.000	284	0.4%	251	17.5%	-	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
KBTBD8	84541	genome.wustl.edu	37	3	67053841	67053841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032505.2	+1	validated	p.Q124H	0.964	132	0%	145	29%	-	-	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	NULL
KBTBD8	84541	genome.wustl.edu	37	3	67058487	67058487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032505.2	+1	validated	p.R469H	1.000	181	0%	154	53.2%	-	-	probably_damaging(0.999)	tolerated(0.26)	deleterious(0.524)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
SUCLG2	8801	genome.wustl.edu	37	3	67546323	67546323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003848.3	-1	reviewed	p.F321V	0.999	240	0%	153	11.8%	-	-	benign(0.024)	deleterious(0)	neutral(0.446)	HMMPfam_Ligase_CoA,superfamily_CoA_ligase,PatternScan_SUCCINYL_COA_LIG_3
SUCLG2	8801	genome.wustl.edu	37	3	67548683	67548683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003848.3	-1	reviewed	p.N265S	1.000	708	0%	554	51.3%	-	-	benign(0.307)	deleterious(0.03)	neutral(0.460)	superfamily_SSF56059
FAM19A1	407738	genome.wustl.edu	37	3	68055804	68055804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213609.2	+1	reviewed	p.Y12C	1.000	485	0%	369	12.5%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
TMF1	7110	genome.wustl.edu	37	3	69077068	69077068	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007114.2	-1	validated	p.E914*	1.000	373	0%	302	50%	-	-	-	-	-	NULL
ARL6IP5	10550	genome.wustl.edu	37	3	69153633	69153633	+	Missense_Mutation	SNP	C	C	T	rs11542221	byCluster	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006407.3	+1	reviewed	p.S138L	1.000	130	0%	91	57.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PRA1
LMOD3	56203	genome.wustl.edu	37	3	69167987	69167987	+	Missense_Mutation	SNP	C	C	T	rs149196259	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198271.3	-1	validated	p.E507K	1.000	282	0%	250	10.4%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FOXP1	27086	genome.wustl.edu	37	3	71008430	71008430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032682.4	-1	reviewed	p.E668K	1.000	663	0.2%	478	25.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PROK2	60675	genome.wustl.edu	37	3	71830681	71830681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126128.1	-1	reviewed	p.K53N	1.000	229	0%	191	29.8%	-	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_Prokineticin,superfamily_Colipase-like
SHQ1	55164	genome.wustl.edu	37	3	72861879	72861879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018130.2	-1	validated	p.R335C	1.000	415	0%	270	52.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SHQ1
GXYLT2	727936	genome.wustl.edu	37	3	73004291	73004291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080393.1	+1	provisional	p.D215N	0.998	196	0%	188	26.6%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Glyco_transf_8,superfamily_SSF53448
GXYLT2	727936	genome.wustl.edu	37	3	73004477	73004477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080393.1	+1	provisional	p.R277W	0.989	192	0%	139	27.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_8,superfamily_SSF53448
PPP4R2	151987	genome.wustl.edu	37	3	73096445	73096445	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174907.2	+1	provisional	p.V75	0.997	323	0.3%	221	48.9%	-	-	-	-	-	HMMPfam_PPP4R2
EBLN2	55096	genome.wustl.edu	37	3	73111477	73111477	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018029.3	+1	provisional	p.K82T	0.007	151	0%	132	49.2%	-	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_BDV_P40,superfamily_P40_nucleoprot_BD-vir
MIR1324	100302212	genome.wustl.edu	37	3	75679986	75679986	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408868	+1	known	NULL	0.759	1109	0%	561	12.8%	-	-	-	-	-	-
ZNF717	100131827	genome.wustl.edu	37	3	75832469	75832469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128223.1	-1	validated	p.K15N	0.012	145	0%	77	50.6%	-	-	benign(0.067)	tolerated(0.43)	neutral(0.018)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ROBO1	6091	genome.wustl.edu	37	3	78711171	78711171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002941.3	-1	reviewed	p.S687Y	1.000	282	0%	217	28.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
HTR1F	3355	genome.wustl.edu	37	3	88040946	88040946	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000866.3	+1	validated	p.I349	1.000	127	0%	83	51.8%	-	-	-	-	-	superfamily_SSF81321
C3orf38	285237	genome.wustl.edu	37	3	88205420	88205420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318887	+1	known	p.E209*	1.000	289	0%	237	18.6%	-	-	-	-	-	superfamily_NTF2-like
EPHA3	2042	genome.wustl.edu	37	3	89480458	89480458	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005233.5	+1	reviewed	p.F765	0.998	356	0%	244	27%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PROS1	5627	genome.wustl.edu	37	3	93603693	93603693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000313.3	-1	reviewed	p.K457N	0.997	305	0%	187	26.7%	-	-	benign(0)	tolerated(1)	-	HMMSmart_LamG,HMMPfam_Laminin_G_1
EPHA6	285220	genome.wustl.edu	37	3	96533745	96533745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080448.2	+1	provisional	p.R93I	0.001	94	0%	48	56.2%	-	-	benign(0.303)	deleterious(0)	deleterious(0.538)	NULL
EPHA6	285220	genome.wustl.edu	37	3	96963003	96963003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080448.2	+1	provisional	p.S493Y	1.000	299	0%	230	20.4%	-	-	probably_damaging(0.978)	tolerated(0.74)	neutral(0.422)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ARL6	84100	genome.wustl.edu	37	3	97506837	97506837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032146.3	+1	reviewed	p.I118T	1.000	160	0.6%	97	12.4%	-	-	benign(0.259)	deleterious(0)	deleterious(0.472)	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
CRYBG3	131544	genome.wustl.edu	37	3	97596007	97596007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153605.2	+1	validated	p.S42F	1.000	135	0%	102	16.7%	-	-	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	NULL
CRYBG3	131544	genome.wustl.edu	37	3	97662134	97662134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153605.2	+1	validated	p.Q1015H	1.000	343	0%	161	55.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
MINA	84864	genome.wustl.edu	37	3	97686059	97686059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042533.1	-1	validated	p.D127Y	1.000	408	0%	270	23.3%	-	-	benign(0.076)	tolerated(0.83)	neutral(0.006)	HMMPfam_Cupin_4,superfamily_Clavaminate synthase-like
GABRR3	200959	genome.wustl.edu	37	3	97744433	97744433	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105580.1	-1	provisional	p.F72	1.000	440	0%	338	30.5%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
OR5H14	403273	genome.wustl.edu	37	3	97868297	97868297	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005514.1	+1	provisional	p.W23*	0.001	283	0%	233	48.5%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR5K3	403277	genome.wustl.edu	37	3	98109996	98109996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005516.1	+1	provisional	p.L163M	0.000	466	0%	438	29.7%	-	-	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K3	403277	genome.wustl.edu	37	3	98110334	98110334	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005516.1	+1	provisional	p.F275L	0.990	316	0%	243	53.5%	-	-	benign(0.003)	deleterious(0.05)	neutral(0.345)	HMMPfam_7tm_1,superfamily_SSF81321
COL8A1	1295	genome.wustl.edu	37	3	99509854	99509854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001850.3	+1	reviewed	p.E110K	1.000	191	0%	104	18.3%	-	-	unknown(0)	tolerated(0.33)	-	NULL
COL8A1	1295	genome.wustl.edu	37	3	99513094	99513094	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001850.3	+1	reviewed	p.R117*	0.901	377	0%	266	25.9%	-	-	-	-	-	NULL
FILIP1L	11259	genome.wustl.edu	37	3	99643129	99643129	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182909.2	-1	validated	p.E184*	0.999	809	0%	647	27.5%	-	-	-	-	-	HMMPfam_CortBP2
TBC1D23	55773	genome.wustl.edu	37	3	99998496	99998496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018309.2	+1	validated	p.E19D	1.000	124	0%	68	55.9%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
TBC1D23	55773	genome.wustl.edu	37	3	100000575	100000575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000485687	+1	known	p.S60Y	0.000	290	0%	188	45.2%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
NIT2	56954	genome.wustl.edu	37	3	100064474	100064474	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020202.4	+1	validated	p.E128*	1.000	328	0%	273	26.7%	-	-	-	-	-	HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse
TOMM70A	9868	genome.wustl.edu	37	3	100091563	100091563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014820.3	-1	validated	p.R447C	1.000	379	0%	252	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48452
TOMM70A	9868	genome.wustl.edu	37	3	100100548	100100548	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014820.3	-1	validated	p.T265	0.617	558	0.2%	417	21.6%	-	-	-	-	-	superfamily_SSF48452
GPR128	84873	genome.wustl.edu	37	3	100362177	100362177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032787.2	+1	validated	p.A256S	0.598	433	0%	294	16.3%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
GPR128	84873	genome.wustl.edu	37	3	100378646	100378646	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032787.2	+1	validated	p.I646	0.029	507	0.2%	340	27.4%	-	-	-	-	-	HMMPfam_7tm_2
IMPG2	50939	genome.wustl.edu	37	3	100961706	100961706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016247.2	-1	validated	p.E950*	1.000	196	0%	144	20.8%	-	-	-	-	-	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
SENP7	57337	genome.wustl.edu	37	3	101047389	101047389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020654.3	-1	validated	p.P933S	1.000	202	0%	122	15.6%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases
SENP7	57337	genome.wustl.edu	37	3	101117879	101117879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020654.3	-1	validated	p.T168M	1.000	243	0.4%	228	48.7%	-	-	possibly_damaging(0.657)	deleterious(0)	deleterious(0.676)	NULL
ZBTB11	27107	genome.wustl.edu	37	3	101373629	101373629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014415.3	-1	validated	p.S743Y	1.000	248	0%	169	40.8%	-	-	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZBTB11	27107	genome.wustl.edu	37	3	101378821	101378821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014415.3	-1	validated	p.R618C	1.000	292	0%	224	29%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZBTB11	27107	genome.wustl.edu	37	3	101383509	101383509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014415.3	-1	validated	p.R558I	1.000	682	0%	444	27.3%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ZBTB11	27107	genome.wustl.edu	37	3	101390113	101390113	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014415.3	-1	validated	p.F213	1.000	260	0%	186	17.7%	-	-	-	-	-	superfamily_BTB/POZ_fold,HMMPfam_BTB
CBLB	868	genome.wustl.edu	37	3	105377967	105377967	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170662.3	-1	validated	p.V932	0.006	372	0%	240	52.9%	-	-	-	-	-	HMMPfam_UBA,HMMSmart_SM00165
CBLB	868	genome.wustl.edu	37	3	105438895	105438895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170662.3	-1	validated	p.R468Q	1.000	191	0.5%	149	30.2%	-	-	benign(0.141)	deleterious(0.02)	neutral(0.395)	NULL
CBLB	868	genome.wustl.edu	37	3	105438944	105438944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170662.3	-1	validated	p.D452N	1.000	235	0%	188	53.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HHLA2	11148	genome.wustl.edu	37	3	108070658	108070658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000467562	+1	known	p.R23I	0.818	332	0.3%	261	10.7%	-	-	unknown(0)	-	-	NULL
HHLA2	11148	genome.wustl.edu	37	3	108072381	108072381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007072.2	+1	provisional	p.E58K	0.000	182	0.5%	136	45.6%	-	-	possibly_damaging(0.438)	tolerated(0.12)	neutral(0.403)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
HHLA2	11148	genome.wustl.edu	37	3	108076747	108076747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007072.2	+1	provisional	p.D248Y	0.000	165	0%	109	45%	-	-	benign(0.359)	tolerated(0.1)	neutral(0.400)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
HHLA2	11148	genome.wustl.edu	37	3	108076930	108076930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007072.2	+1	provisional	p.L309I	0.000	241	0%	151	24.5%	-	-	possibly_damaging(0.873)	tolerated(0.66)	neutral(0.342)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
MYH15	22989	genome.wustl.edu	37	3	108110672	108110672	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.L1809	0.989	690	0%	569	56.1%	-	-	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat
MYH15	22989	genome.wustl.edu	37	3	108124288	108124288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.R1565C	0.362	161	0%	139	53.2%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_Myosin_tail_1
MYH15	22989	genome.wustl.edu	37	3	108211371	108211371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.L303I	0.087	391	0%	236	49.2%	-	-	possibly_damaging(0.765)	deleterious(0.04)	deleterious(0.633)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1524	57650	genome.wustl.edu	37	3	108276119	108276119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020890.2	-1	validated	p.S719F	1.000	378	0%	332	17.8%	-	-	probably_damaging(0.968)	tolerated(0.05)	deleterious(0.755)	NULL
KIAA1524	57650	genome.wustl.edu	37	3	108298491	108298491	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020890.2	-1	validated	p.A198	0.983	259	0%	116	50%	-	-	-	-	-	superfamily_ARM repeat
DZIP3	9666	genome.wustl.edu	37	3	108373065	108373065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014648.3	+1	validated	p.K703Q	0.491	352	0%	193	30.1%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MORC1	27136	genome.wustl.edu	37	3	108677946	108677946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014429.3	-1	reviewed	p.E941*	0.970	108	0%	49	22.4%	-	-	-	-	-	NULL
DPPA2	151871	genome.wustl.edu	37	3	109028101	109028101	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138815.3	-1	validated	p.P86	0.001	446	0%	245	23.7%	-	-	-	-	-	NULL
DPPA4	55211	genome.wustl.edu	37	3	109049638	109049638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018189.3	-1	validated	p.E138*	0.898	180	0%	94	22.3%	-	-	-	-	-	NULL
PVRL3	25945	genome.wustl.edu	37	3	110852623	110852623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015480.1	+1	provisional	p.T404M	0.998	402	0%	285	24.9%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
ZBED2	79413	genome.wustl.edu	37	3	111312789	111312789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024508.3	-1	validated	p.R87H	0.001	213	0%	219	31.5%	-	-	probably_damaging(0.969)	tolerated(0.19)	neutral(0.461)	HMMPfam_zf-BED,HMMSmart_ZnF_BED
PHLDB2	90102	genome.wustl.edu	37	3	111603067	111603067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134438.1	+1	validated	p.R48I	0.996	179	0%	139	47.5%	-	-	possibly_damaging(0.805)	deleterious(0.02)	deleterious(0.686)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111603819	111603819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134438.1	+1	validated	p.D299Y	0.998	311	0%	185	55.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111632560	111632560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000477695	+1	known	p.A577V	0.000	235	0%	167	52.7%	-	-	benign(0.095)	-	-	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111667826	111667826	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134438.1	+1	validated	p.T845	1.000	133	0%	106	57.5%	-	-	-	-	-	NULL
TAGLN3	29114	genome.wustl.edu	37	3	111732430	111732430	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494932	+1	known	p.T118	0.000	62	0%	42	26.2%	-	-	-	-	-	NULL
MIR567	693152	genome.wustl.edu	37	3	111831682	111831682	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385205	+1	known	NULL	0.000	322	0%	278	51.1%	-	-	-	-	-	-
SLC35A5	55032	genome.wustl.edu	37	3	112299937	112299937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017945.2	+1	provisional	p.K325E	1.000	177	0%	173	25.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Nuc_sug_transp
CD200R1L	344807	genome.wustl.edu	37	3	112546080	112546080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008784.2	-1	validated	p.E147K	0.516	137	0%	130	24.6%	-	-	possibly_damaging(0.542)	deleterious(0.05)	deleterious(0.529)	superfamily_Immunoglobulin
C3orf17	25871	genome.wustl.edu	37	3	112724738	112724738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015412.3	-1	validated	p.F450C	0.312	340	0%	229	54.6%	-	-	possibly_damaging(0.894)	deleterious(0.02)	deleterious(0.735)	NULL
WDR52	55779	genome.wustl.edu	37	3	113052257	113052257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393845	-1	known	p.S352Y	0.012	326	0%	261	22.6%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
WDR52	55779	genome.wustl.edu	37	3	113115523	113115523	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018338.3	-1	validated	p.R541*	1.000	259	0%	206	19.9%	-	-	-	-	-	superfamily_WD40_like
WDR52	55779	genome.wustl.edu	37	3	113118757	113118757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018338.3	-1	validated	p.R522Q	0.000	155	0%	86	52.3%	-	-	benign(0.019)	tolerated(0.53)	neutral(0.009)	superfamily_WD40_like
SPICE1	152185	genome.wustl.edu	37	3	113218327	113218327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144718.3	-1	validated	p.T84P	0.007	526	0%	426	24.4%	-	-	benign(0.038)	tolerated(0.24)	neutral(0.040)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113376444	113376444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.R1362I	0.954	263	0%	190	29.5%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113376526	113376526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.D1335Y	1.000	166	0%	142	54.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP6V1A	523	genome.wustl.edu	37	3	113517215	113517215	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001690.2	+1	reviewed	p.F472	1.000	239	0%	175	48.6%	-	-	-	-	-	superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase
ZNF80	7634	genome.wustl.edu	37	3	113955149	113955149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007136.3	-1	validated	p.S258F	0.005	200	0%	155	19.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ZNF80	7634	genome.wustl.edu	37	3	113955221	113955221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007136.3	-1	validated	p.R234Q	0.000	229	0%	166	49.4%	-	-	benign(0.042)	tolerated(1)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF80	7634	genome.wustl.edu	37	3	113955907	113955907	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007136.3	-1	validated	p.R5	0.000	121	0%	119	47.1%	-	-	-	-	-	NULL
TIGIT	201633	genome.wustl.edu	37	3	114014580	114014580	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173799.3	+1	validated	p.R84*	0.067	126	0%	101	54.5%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZBTB20	26137	genome.wustl.edu	37	3	114070219	114070219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015642.4	-1	validated	p.P163T	0.959	63	1.6%	64	57.8%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
LSAMP	4045	genome.wustl.edu	37	3	115805184	115805184	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002338.3	-1	reviewed	p.Y125*	1.000	295	0%	176	55.1%	-	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
IGSF11	152404	genome.wustl.edu	37	3	118621614	118621614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015887.1	-1	validated	p.G350D	0.921	132	0%	117	24.8%	-	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119132789	119132789	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.S671	0.000	77	0%	108	54.6%	-	-	-	-	-	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119132832	119132832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.L686I	0.000	117	0%	134	29.9%	-	-	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
POGLUT1	56983	genome.wustl.edu	37	3	119204231	119204231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152305.2	+1	validated	p.S212L	1.000	443	0%	244	24.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00672,HMMPfam_DUF821
ADPRH	141	genome.wustl.edu	37	3	119305410	119305410	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001125.2	+1	reviewed	p.K193*	0.996	108	0%	84	27.4%	-	-	-	-	-	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase
ADPRH	141	genome.wustl.edu	37	3	119306422	119306422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001125.2	+1	reviewed	p.F257L	1.000	241	0%	179	50.8%	-	-	probably_damaging(0.973)	tolerated(0.4)	neutral(0.431)	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase
PLA1A	51365	genome.wustl.edu	37	3	119325710	119325710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015900.2	+1	validated	p.L55I	1.000	131	0%	99	43.4%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PLA1A	51365	genome.wustl.edu	37	3	119328423	119328423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015900.2	+1	validated	p.G188C	1.000	168	0%	164	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
POPDC2	64091	genome.wustl.edu	37	3	119373456	119373456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022135.2	-1	reviewed	p.R166C	1.000	134	0%	85	42.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Popeye,superfamily_cAMP-binding domain-like
GSK3B	2932	genome.wustl.edu	37	3	119582439	119582439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002093.3	-1	reviewed	p.R321Q	1.000	324	0%	241	49.4%	-	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GSK3B	2932	genome.wustl.edu	37	3	119634999	119634999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002093.3	-1	reviewed	p.R167Q	1.000	224	0%	136	44.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GSK3B	2932	genome.wustl.edu	37	3	119642289	119642289	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002093.3	-1	reviewed	p.P136	1.000	235	0%	149	29.5%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GPR156	165829	genome.wustl.edu	37	3	119886225	119886225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153002.2	-1	validated	p.S700F	0.205	62	0%	47	48.9%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
GPR156	165829	genome.wustl.edu	37	3	119886268	119886268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153002.2	-1	validated	p.E686K	0.000	77	0%	59	18.6%	-	-	benign(0.026)	tolerated(0.81)	neutral(0.002)	NULL
FSTL1	11167	genome.wustl.edu	37	3	120130758	120130758	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007085.4	-1	reviewed	p.R81*	1.000	281	0%	231	14.3%	-	-	-	-	-	HMMSmart_KAZAL,HMMPfam_Kazal_2,superfamily_SSF100895
HGD	3081	genome.wustl.edu	37	3	120360471	120360471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000187.3	-1	reviewed	p.F282V	1.000	265	0%	218	57.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HgmA,superfamily_RmlC-like cupins
GTF2E1	2960	genome.wustl.edu	37	3	120469565	120469565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005513.2	+1	validated	p.R56W	1.000	242	0%	175	31.4%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_TFIIE_alpha,HMMSmart_TFIIE
POLQ	10721	genome.wustl.edu	37	3	121207190	121207190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.E1530K	0.001	70	0%	76	55.3%	-	-	benign(0.132)	deleterious(0)	neutral(0.456)	NULL
POLQ	10721	genome.wustl.edu	37	3	121207459	121207459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.S1440L	1.000	93	0%	102	11.8%	-	-	benign(0.181)	deleterious(0)	neutral(0.461)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121383436	121383436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004487.3	-1	validated	p.R3224Q	0.963	153	0%	125	12.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121410001	121410001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004487.3	-1	validated	p.Q2732P	1.000	577	0%	585	26.8%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CASR	846	genome.wustl.edu	37	3	121973064	121973064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000388.3	+1	reviewed	p.L10I	0.996	123	0%	99	28.3%	-	-	possibly_damaging(0.608)	deleterious(0.03)	deleterious(0.575)	NULL
FAM162A	26355	genome.wustl.edu	37	3	122128637	122128637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014367.3	+1	validated	p.R142C	1.000	179	0%	146	26%	-	-	benign(0.205)	tolerated(0.11)	neutral(0.292)	HMMPfam_DUF1075
PARP14	54625	genome.wustl.edu	37	3	122404132	122404132	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494811	+1	known	p.R105*	0.004	314	0%	170	26.5%	-	-	-	-	-	NULL
PARP14	54625	genome.wustl.edu	37	3	122418266	122418266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017554.2	+1	validated	p.D289N	0.000	190	0%	172	12.2%	-	-	benign(0.071)	tolerated(0.26)	neutral(0.039)	NULL
PARP14	54625	genome.wustl.edu	37	3	122437687	122437687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017554.2	+1	validated	p.K1563N	0.000	152	0.7%	119	27.7%	-	-	possibly_damaging(0.696)	tolerated(0.3)	neutral(0.278)	NULL
DIRC2	84925	genome.wustl.edu	37	3	122545809	122545809	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032839.2	+1	reviewed	p.V200	0.969	261	0%	229	26.2%	-	-	-	-	-	superfamily_MFS general substrate transporter
SEMA5B	54437	genome.wustl.edu	37	3	122631187	122631187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031702.2	-1	validated	p.R910W	0.884	75	0%	59	39%	-	-	possibly_damaging(0.752)	deleterious(0.01)	deleterious(0.681)	superfamily_TSP-1 type 1 repeat
ADCY5	111	genome.wustl.edu	37	3	123005539	123005539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.R1217H	1.000	123	0%	109	52.3%	-	-	probably_damaging(0.994)	tolerated(0.28)	deleterious(0.484)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ADCY5	111	genome.wustl.edu	37	3	123010043	123010043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.E1082K	1.000	99	0%	83	59%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
PTPLB	201562	genome.wustl.edu	37	3	123219414	123219414	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000493515	-1	known	p.L43F	1.000	422	0%	212	51.9%	-	-	-	-	-	HMMPfam_PTPLA
CCDC14	64770	genome.wustl.edu	37	3	123665877	123665877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022757.4	-1	validated	p.R332Q	0.000	842	0%	650	54.6%	-	-	benign(0.006)	tolerated(0.64)	neutral(0.003)	NULL
ROPN1	54763	genome.wustl.edu	37	3	123694388	123694388	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017578.2	-1	provisional	e3-1	1.000	493	0%	415	26.5%	-	-	-	-	-	-
KALRN	8997	genome.wustl.edu	37	3	124180772	124180772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.A1295V	1.000	266	0%	184	15.8%	-	-	benign(0.007)	tolerated(0.19)	neutral(0.050)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
KALRN	8997	genome.wustl.edu	37	3	124393288	124393288	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354186	+1	known	p.S2309Y	1.000	120	0%	144	30.6%	-	-	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
UMPS	7372	genome.wustl.edu	37	3	124456785	124456785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000474588	+1	known	p.R112W	0.911	287	0%	258	53.9%	-	-	possibly_damaging(0.461)	deleterious(0.01)	deleterious(0.556)	NULL
UMPS	7372	genome.wustl.edu	37	3	124456992	124456992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000373.3	+1	reviewed	p.K296N	1.000	279	0%	198	12.6%	-	-	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_OMPdecase,superfamily_Ribulose-phoshate binding barrel
MUC13	56667	genome.wustl.edu	37	3	124646448	124646448	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033049.2	-1	validated	p.E148*	0.000	588	0.3%	565	24.8%	-	-	-	-	-	NULL
HEG1	57493	genome.wustl.edu	37	3	124732833	124732833	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020733.1	-1	validated	p.I530	0.713	332	0%	234	29.5%	-	-	-	-	-	NULL
ZNF148	7707	genome.wustl.edu	37	3	124951340	124951340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021964.2	-1	validated	p.I744L	1.000	176	0%	115	28.7%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
MIR548I1	100302204	genome.wustl.edu	37	3	125509331	125509331	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408810	-1	known	NULL	0.005	210	0%	142	21.8%	-	-	-	-	-	-
ALDH1L1	10840	genome.wustl.edu	37	3	125855661	125855661	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012190.2	-1	reviewed	p.F430	0.998	243	0%	189	10.6%	-	-	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ZXDC	79364	genome.wustl.edu	37	3	126194041	126194041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025112.4	-1	validated	p.Y223C	1.000	47	0%	40	22.5%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
UROC1	131669	genome.wustl.edu	37	3	126224818	126224818	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144639.2	-1	reviewed	p.I213	0.766	36	0%	41	51.2%	-	-	-	-	-	HMMPfam_Urocanase,superfamily_Urocanase
PLXNA1	5361	genome.wustl.edu	37	3	126737187	126737187	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.S1214	0.091	35	0%	60	15%	-	-	-	-	-	HMMSmart_SM00429
PLXNA1	5361	genome.wustl.edu	37	3	126737359	126737359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.E1272K	1.000	34	0%	46	52.2%	-	-	benign(0.127)	deleterious(0)	neutral(0.455)	NULL
TPRA1	131601	genome.wustl.edu	37	3	127295857	127295857	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016372.2	-1	validated	p.S107	0.007	44	0%	66	31.8%	-	-	-	-	-	HMMPfam_Tmemb_40
KBTBD12	166348	genome.wustl.edu	37	3	127641975	127641975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207335.2	+1	validated	p.M24T	1.000	199	0%	117	14.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_POZ domain,HMMPfam_BTB
KBTBD12	166348	genome.wustl.edu	37	3	127642523	127642523	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207335.2	+1	validated	p.E207*	0.002	176	0%	150	48.7%	-	-	-	-	-	HMMPfam_BACK
KBTBD12	166348	genome.wustl.edu	37	3	127642695	127642695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207335.2	+1	validated	p.S264Y	0.000	255	0%	216	54.6%	-	-	possibly_damaging(0.623)	deleterious(0.04)	deleterious(0.566)	NULL
RUVBL1	8607	genome.wustl.edu	37	3	127819494	127819494	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003707.2	-1	validated	p.E233*	1.000	219	0%	199	16.6%	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_TIP49,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAJB8	165721	genome.wustl.edu	37	3	128181828	128181828	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153330.2	-1	validated	p.F87	0.277	177	0%	164	36.6%	-	-	-	-	-	superfamily_Chaperone J-domain
RPN1	6184	genome.wustl.edu	37	3	128348836	128348836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002950.3	-1	reviewed	p.V332I	0.999	205	0%	151	29.8%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Ribophorin_I
CCDC48	79825	genome.wustl.edu	37	3	128721116	128721116	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000480450	+1	known	p.D216fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ISY1	57461	genome.wustl.edu	37	3	128859247	128859247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020701.2	-1	provisional	p.D128Y	1.000	541	0%	389	51.9%	-	-	benign(0.212)	deleterious(0)	neutral(0.465)	HMMPfam_Isy1
CNBP	7555	genome.wustl.edu	37	3	128889962	128889962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127192.1	-1	reviewed	p.G128R	1.000	213	0%	160	20.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains
CNBP	7555	genome.wustl.edu	37	3	128890058	128890058	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127192.1	-1	reviewed	p.R96*	1.000	215	0%	166	21.7%	-	-	-	-	-	superfamily_Retrovirus zinc finger-like domains
IFT122	55764	genome.wustl.edu	37	3	129207237	129207237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052985.2	+1	reviewed	p.K714N	1.000	147	0%	104	45.2%	-	-	possibly_damaging(0.521)	deleterious(0.02)	deleterious(0.558)	NULL
COL6A5	256076	genome.wustl.edu	37	3	130150497	130150497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.L1813I	1.000	109	0%	113	47.8%	-	-	probably_damaging(0.994)	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130150732	130150732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.A1891V	1.000	503	0%	317	47%	-	-	possibly_damaging(0.929)	-	-	HMMSmart_VWA,superfamily_SSF53300
ATP2C1	27032	genome.wustl.edu	37	3	130699476	130699476	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001486.1	+1	reviewed	p.E598*	1.000	527	0%	318	50.3%	-	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP2C1	27032	genome.wustl.edu	37	3	130714897	130714897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001486.1	+1	reviewed	p.E690K	1.000	90	0%	71	54.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calcium ATPase transmembrane domain M
NEK11	79858	genome.wustl.edu	37	3	130873879	130873879	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024800.4	+1	reviewed	e8-1	0.967	377	0%	237	20.3%	-	-	-	-	-	-
NEK11	79858	genome.wustl.edu	37	3	130992351	130992351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024800.4	+1	reviewed	p.D551Y	0.352	166	0%	156	26.3%	-	-	possibly_damaging(0.519)	tolerated(0.07)	deleterious(0.493)	NULL
NEK11	79858	genome.wustl.edu	37	3	131068483	131068483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024800.4	+1	reviewed	p.E601K	0.879	180	0%	140	13.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MRPL3	11222	genome.wustl.edu	37	3	131208901	131208901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007208.2	-1	reviewed	p.F164L	1.000	381	0%	253	25.3%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Ribosomal_L3,superfamily_Translation proteins
MRPL3	11222	genome.wustl.edu	37	3	131220560	131220560	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007208.2	-1	reviewed	e2-1	0.978	118	0%	106	21.7%	-	-	-	-	-	-
CPNE4	131034	genome.wustl.edu	37	3	131261536	131261536	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130808.1	-1	reviewed	p.I468	1.000	215	0%	173	20.8%	-	-	-	-	-	HMMSmart_SM00327,HMMPfam_Copine,superfamily_vWA-like
DNAJC13	23317	genome.wustl.edu	37	3	132153397	132153397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.M1I	1.000	375	0%	279	23.3%	-	-	benign(0.356)	deleterious(0)	deleterious(0.557)	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132211376	132211376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.E1248K	1.000	248	0%	166	50%	-	-	benign(0.021)	deleterious(0.02)	neutral(0.384)	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132233471	132233471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.M1814I	1.000	424	0%	330	24.5%	-	-	benign(0.01)	tolerated(0.12)	neutral(0.261)	superfamily_ARM repeat
NPHP3	27031	genome.wustl.edu	37	3	132405228	132405228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153240.3	-1	reviewed	p.G1069R	1.000	188	0%	183	19.7%	-	-	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	superfamily_TPR-like
NPHP3	27031	genome.wustl.edu	37	3	132410081	132410081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153240.3	-1	reviewed	p.S842Y	0.223	285	0.4%	150	10%	-	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
NPHP3	27031	genome.wustl.edu	37	3	132438552	132438552	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153240.3	-1	reviewed	p.F172	1.000	491	0%	232	24.6%	-	-	-	-	-	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133347426	133347426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007027.3	-1	reviewed	p.L891P	0.988	354	0%	332	28.9%	-	-	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133356935	133356935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007027.3	-1	reviewed	p.R769C	0.013	491	0%	385	51.7%	-	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
TF	7018	genome.wustl.edu	37	3	133476735	133476735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001063.3	+1	reviewed	p.K331N	0.369	201	0.5%	151	60.9%	-	-	benign(0.042)	tolerated(0.4)	neutral(0.018)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
TF	7018	genome.wustl.edu	37	3	133478150	133478150	+	Missense_Mutation	SNP	G	G	A	rs121918680		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001063.3	+1	reviewed	p.E394K	1.000	274	0.4%	251	15.5%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
RAB6B	51560	genome.wustl.edu	37	3	133553425	133553425	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016577.3	-1	validated	p.E186*	1.000	155	0%	101	53.5%	-	-	-	-	-	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLCO2A1	6578	genome.wustl.edu	37	3	133670122	133670122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005630.2	-1	validated	p.S264Y	1.000	170	0%	114	54.4%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
RYK	6259	genome.wustl.edu	37	3	133896918	133896918	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000472234	-1	known	NULL	1.000	167	0%	92	9.8%	-	-	-	-	-	-
RYK	6259	genome.wustl.edu	37	3	133907742	133907742	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005861.2	-1	reviewed	p.D350N	1.000	311	0%	194	28.4%	-	-	-	-	-	NULL
RYK	6259	genome.wustl.edu	37	3	133941271	133941271	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005861.2	-1	reviewed	p.E115K	0.890	192	0%	109	52.3%	-	-	-	-	-	NULL
ANAPC13	25847	genome.wustl.edu	37	3	134201761	134201761	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024400.1	-1	reviewed	NULL	0.007	382	0%	328	27.1%	-	-	-	-	-	-
EPHB1	2047	genome.wustl.edu	37	3	134920439	134920439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004441.4	+1	reviewed	p.V752I	1.000	300	0%	239	54%	-	-	probably_damaging(0.978)	tolerated(0.17)	deleterious(0.479)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
PPP2R3A	5523	genome.wustl.edu	37	3	135721791	135721791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002718.3	+1	reviewed	p.D484A	0.021	101	0%	50	36%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
DZIP1L	199221	genome.wustl.edu	37	3	137783575	137783575	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486487	-1	known	p.E49K	0.875	189	0.5%	155	22.6%	-	-	-	-	-	NULL
DZIP1L	199221	genome.wustl.edu	37	3	137790667	137790667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173543.2	-1	validated	p.G478E	0.996	135	0%	93	52.7%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
A4GNT	51146	genome.wustl.edu	37	3	137843191	137843191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016161.2	-1	reviewed	p.R313H	0.370	260	0%	323	46.4%	-	-	possibly_damaging(0.643)	tolerated(0.08)	deleterious(0.525)	HMMPfam_Gb3_synth
ARMC8	25852	genome.wustl.edu	37	3	137940769	137940769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015396.3	+1	validated	p.D28Y	1.000	408	0%	288	26.4%	-	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	superfamily_ARM-type_fold
ARMC8	25852	genome.wustl.edu	37	3	138003318	138003318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015396.3	+1	validated	p.D577Y	1.000	276	0%	195	25.6%	-	-	possibly_damaging(0.772)	deleterious(0.01)	deleterious(0.693)	superfamily_ARM-type_fold
NME9	347736	genome.wustl.edu	37	3	138033203	138033203	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000474690	-1	known	p.W74*	0.000	586	0%	385	54.3%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
NME9	347736	genome.wustl.edu	37	3	138037034	138037034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178130.2	-1	provisional	p.E53K	0.230	252	0%	211	12.3%	-	-	benign(0.15)	tolerated(0.17)	neutral(0.072)	superfamily_Thiordxn-like_fd
CEP70	80321	genome.wustl.edu	37	3	138256161	138256161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024491.2	-1	validated	p.R165Q	0.640	473	0%	352	16.5%	-	-	probably_damaging(0.982)	tolerated(0.09)	deleterious(0.723)	NULL
CEP70	80321	genome.wustl.edu	37	3	138289168	138289168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024491.2	-1	validated	p.T153A	0.996	333	0%	260	29.2%	-	-	benign(0.096)	tolerated(0.84)	neutral(0.007)	NULL
FAIM	55179	genome.wustl.edu	37	3	138340328	138340328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033030.1	+1	validated	p.E54K	1.000	568	0%	303	21.1%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_FAIM1
PIK3CB	5291	genome.wustl.edu	37	3	138426012	138426012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006219.1	-1	provisional	p.P507S	1.000	364	0%	243	21%	-	-	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
MRPS22	56945	genome.wustl.edu	37	3	139065787	139065787	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000466690	+1	known	p.E76K	0.636	192	0%	131	56.5%	-	-	-	-	-	HMMPfam_MRP-S22
MRPS22	56945	genome.wustl.edu	37	3	139074622	139074622	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020191.2	+1	reviewed	p.N326T	0.377	184	0%	123	51.2%	-	-	benign(0.174)	tolerated(0.11)	neutral(0.288)	NULL
MRPS22	56945	genome.wustl.edu	37	3	139075836	139075836	+	Missense_Mutation	SNP	C	C	T	rs191025290	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020191.2	+1	reviewed	p.R355C	0.829	88	0%	34	32.4%	-	-	possibly_damaging(0.7)	tolerated(0.05)	deleterious(0.597)	NULL
TRIM42	287015	genome.wustl.edu	37	3	140406664	140406664	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152616.3	+1	reviewed	p.F380	0.980	170	0%	123	56.1%	-	-	-	-	-	NULL
TRIM42	287015	genome.wustl.edu	37	3	140407137	140407137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152616.3	+1	reviewed	p.S538Y	0.997	181	0%	132	11.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ACPL2	92370	genome.wustl.edu	37	3	141011816	141011816	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037172.1	+1	validated	p.I404	1.000	213	0.5%	168	28.6%	-	-	-	-	-	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
ZBTB38	253461	genome.wustl.edu	37	3	141162159	141162159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080412.2	+1	validated	p.P310Q	0.014	75	0%	82	59.8%	-	-	possibly_damaging(0.905)	tolerated(0.73)	neutral(0.361)	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141164255	141164255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080412.2	+1	validated	p.P1009S	0.988	89	1.1%	76	42.1%	-	-	benign(0.012)	tolerated(0.32)	neutral(0.025)	superfamily_SSF57667
ZBTB38	253461	genome.wustl.edu	37	3	141164428	141164428	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080412.2	+1	validated	p.F1066	0.918	167	0%	138	13%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GRK7	131890	genome.wustl.edu	37	3	141535695	141535695	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139209.2	+1	reviewed	p.F489V	0.999	226	0%	176	51.7%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_S_TK_X
GK5	256356	genome.wustl.edu	37	3	141906615	141906615	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039547.2	-1	validated	p.K184Q	1.000	296	0%	190	11.6%	-	-	benign(0.056)	tolerated(0.54)	neutral(0.011)	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain
GK5	256356	genome.wustl.edu	37	3	141934453	141934453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039547.2	-1	validated	p.E77*	1.000	186	0%	130	28.5%	-	-	-	-	-	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain
XRN1	54464	genome.wustl.edu	37	3	142151627	142151627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019001.3	-1	validated	p.T62A	0.946	180	0%	107	23.4%	-	-	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_XRN_N
ATR	545	genome.wustl.edu	37	3	142168429	142168429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.L2593I	1.000	222	0%	199	28.1%	-	-	possibly_damaging(0.62)	tolerated(0.19)	neutral(0.266)	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
ATR	545	genome.wustl.edu	37	3	142178199	142178199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.R2407C	1.000	137	0%	92	63%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
ATR	545	genome.wustl.edu	37	3	142215937	142215937	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.R1886*	1.000	230	0%	156	30.1%	-	-	-	-	-	HMMPfam_FAT,superfamily_ARM repeat,superfamily_TPR-like
TRPC1	7220	genome.wustl.edu	37	3	142503850	142503850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003304.4	+1	validated	p.R388I	1.000	243	0%	190	51.1%	-	-	benign(0.006)	tolerated(0.58)	neutral(0.005)	NULL
TRPC1	7220	genome.wustl.edu	37	3	142524891	142524891	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003304.4	+1	validated	p.Q698H	0.983	251	0%	169	53.8%	-	-	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
TRPC1	7220	genome.wustl.edu	37	3	142524994	142524994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003304.4	+1	validated	p.D733Y	1.000	160	0%	116	28.4%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
PCOLCE2	26577	genome.wustl.edu	37	3	142548659	142548659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013363.3	-1	validated	p.L247R	1.000	237	0%	165	52.7%	-	-	possibly_damaging(0.501)	tolerated(0.31)	neutral(0.195)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SLC9A9	285195	genome.wustl.edu	37	3	143185984	143185984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173653.3	-1	reviewed	p.S455Y	0.998	298	0%	222	17.1%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Na_H_Exchanger
SLC9A9	285195	genome.wustl.edu	37	3	143271276	143271276	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173653.3	-1	reviewed	p.L339	0.998	409	0%	288	22.2%	-	-	-	-	-	HMMPfam_Na_H_Exchanger
C3orf58	205428	genome.wustl.edu	37	3	143704469	143704469	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173552.3	+1	validated	p.E248*	1.000	388	0%	274	27%	-	-	-	-	-	NULL
C3orf58	205428	genome.wustl.edu	37	3	143708611	143708611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173552.3	+1	validated	p.K407N	1.000	215	0%	140	22.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PLOD2	5352	genome.wustl.edu	37	3	145806486	145806486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182943.2	-1	reviewed	p.V298I	1.000	431	0.2%	208	25%	-	-	possibly_damaging(0.927)	tolerated(0.43)	neutral(0.389)	NULL
PLSCR2	57047	genome.wustl.edu	37	3	146159589	146159589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020359.1	-1	provisional	p.R222I	0.001	350	0%	160	20.6%	-	-	possibly_damaging(0.721)	deleterious(0.01)	deleterious(0.667)	HMMPfam_Scramblase
PLSCR5	389158	genome.wustl.edu	37	3	146307530	146307530	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085420.1	-1	validated	p.V229	0.535	331	0%	219	21.9%	-	-	-	-	-	HMMPfam_Scramblase
PLSCR5	389158	genome.wustl.edu	37	3	146309556	146309556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085420.1	-1	validated	p.I189S	1.000	330	0%	167	32.3%	-	-	benign(0.139)	deleterious(0)	neutral(0.457)	HMMPfam_Scramblase
ZIC4	84107	genome.wustl.edu	37	3	147114006	147114006	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383075	-1	known	p.L107	0.998	28	0%	44	20.5%	-	-	-	-	-	NULL
HLTF	6596	genome.wustl.edu	37	3	148786042	148786042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003071.3	-1	reviewed	p.K325N	1.000	256	0%	156	39.7%	-	-	possibly_damaging(0.532)	deleterious(0.02)	deleterious(0.563)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
HPS3	84343	genome.wustl.edu	37	3	148857880	148857880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032383.3	+1	reviewed	p.R103C	0.997	291	0%	160	31.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HPS3	84343	genome.wustl.edu	37	3	148884924	148884924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032383.3	+1	reviewed	p.R898H	0.107	283	0.4%	218	27.5%	-	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
CP	1356	genome.wustl.edu	37	3	148939454	148939454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000096.3	-1	reviewed	p.K42N	0.969	163	0%	95	50.5%	-	-	probably_damaging(0.962)	deleterious(0.04)	deleterious(0.754)	superfamily_Cupredoxins
WWTR1	25937	genome.wustl.edu	37	3	149260151	149260151	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015472.4	-1	validated	p.R248*	0.024	247	0%	269	27.1%	-	-	-	-	-	NULL
FAM194A	131831	genome.wustl.edu	37	3	150377767	150377767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152394.3	-1	validated	p.S635Y	0.072	321	0%	205	53.2%	-	-	possibly_damaging(0.923)	deleterious(0.03)	deleterious(0.737)	NULL
SIAH2	6478	genome.wustl.edu	37	3	150460461	150460461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005067.5	-1	reviewed	p.T148A	1.000	175	0%	179	22.9%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_Traf_like,HMMPfam_Sina,superfamily_SSF57850
SIAH2	6478	genome.wustl.edu	37	3	150480319	150480319	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005067.5	-1	reviewed	p.Q106	1.000	33	0%	28	14.3%	-	-	-	-	-	HMMSmart_RING,superfamily_SSF57850
MED12L	116931	genome.wustl.edu	37	3	150876532	150876532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.K261N	1.000	207	0%	175	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR171	29909	genome.wustl.edu	37	3	150916536	150916536	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013308.3	-1	validated	p.E213A	0.087	151	0%	85	69.4%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
P2RY14	9934	genome.wustl.edu	37	3	150931579	150931579	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081455.1	-1	reviewed	p.K176Q	0.986	567	0%	342	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MED12L	116931	genome.wustl.edu	37	3	151067900	151067900	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.V733	0.593	190	0%	108	24.1%	-	-	-	-	-	NULL
MED12L	116931	genome.wustl.edu	37	3	151085987	151085987	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.L1131	0.999	121	0%	105	60%	-	-	-	-	-	NULL
IGSF10	285313	genome.wustl.edu	37	3	151155086	151155086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.E2421D	1.000	207	0%	151	25.8%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IGSF10	285313	genome.wustl.edu	37	3	151163052	151163052	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.N1573H	0.810	523	0%	343	49.3%	-	-	benign(0.104)	tolerated(0.31)	neutral(0.035)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151166896	151166896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.K291N	0.704	237	0%	157	53.5%	-	-	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	superfamily_L domain-like
AADACL2	344752	genome.wustl.edu	37	3	151458473	151458473	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207365.3	+1	validated	p.E60*	0.948	250	0%	136	54.4%	-	-	-	-	-	superfamily_alpha/beta-Hydrolases
AADACL2	344752	genome.wustl.edu	37	3	151474933	151474933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207365.3	+1	validated	p.Y253H	1.000	285	0%	206	25.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
MBNL1	4154	genome.wustl.edu	37	3	152132828	152132828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207293.1	+1	validated	p.K91N	1.000	237	0%	204	11.8%	-	-	probably_damaging(0.989)	tolerated(0.26)	deleterious(0.474)	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153840537	153840537	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015595.3	+1	validated	p.P252	0.732	39	0%	49	63.3%	-	-	-	-	-	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153847442	153847442	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015595.3	+1	validated	p.Q401	0.998	382	0%	257	26.1%	-	-	-	-	-	NULL
GPR149	344758	genome.wustl.edu	37	3	154055923	154055923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038705.1	-1	provisional	p.K587N	1.000	212	0%	227	54.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GPR149	344758	genome.wustl.edu	37	3	154146980	154146980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038705.1	-1	provisional	p.T142K	0.000	62	0%	40	30%	-	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
MME	4311	genome.wustl.edu	37	3	154834335	154834335	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000902.3	+1	reviewed	p.S142	0.528	237	0%	131	54.2%	-	-	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
MME	4311	genome.wustl.edu	37	3	154836571	154836571	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000902.3	+1	reviewed	p.Y231D	1.000	199	0%	95	25.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
MME	4311	genome.wustl.edu	37	3	154855939	154855939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000902.3	+1	reviewed	p.R257C	0.994	450	0.2%	326	27%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
PLCH1	23007	genome.wustl.edu	37	3	155241768	155241768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130960.1	-1	validated	p.G451E	1.000	410	0%	343	25.4%	-	-	benign(0.378)	tolerated(0.05)	neutral(0.466)	superfamily_PLC-like phosphodiesterases
C3orf33	285315	genome.wustl.edu	37	3	155520326	155520326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173657.1	-1	predicted	p.R14*	0.998	569	0%	423	48.5%	-	-	-	-	-	NULL
GMPS	8833	genome.wustl.edu	37	3	155611427	155611427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003875.2	+1	reviewed	p.V50M	1.000	223	0%	144	22.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
GMPS	8833	genome.wustl.edu	37	3	155632326	155632326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003875.2	+1	reviewed	p.E335D	1.000	243	0%	117	26.5%	-	-	benign(0.018)	tolerated(0.19)	neutral(0.050)	superfamily_Adenine nucleotide alpha hydrolases-like
GMPS	8833	genome.wustl.edu	37	3	155633955	155633955	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003875.2	+1	reviewed	p.E396*	1.000	228	0%	182	50.5%	-	-	-	-	-	superfamily_Adenine nucleotide alpha hydrolases-like
KCNAB1	7881	genome.wustl.edu	37	3	155861116	155861116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003471.3	+1	reviewed	p.G50E	0.092	101	0%	92	52.2%	-	-	benign(0.102)	deleterious(0)	neutral(0.453)	NULL
SSR3	6747	genome.wustl.edu	37	3	156266748	156266748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007107.2	-1	reviewed	p.R102Q	1.000	504	0%	327	26%	-	-	benign(0.172)	tolerated(0.16)	neutral(0.075)	HMMPfam_TRAP-gamma
MLF1	4291	genome.wustl.edu	37	3	158320683	158320683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022443.3	+1	validated	p.R219K	0.000	344	0%	201	32.3%	-	-	benign(0.025)	tolerated(0.84)	neutral(0.002)	NULL
GFM1	85476	genome.wustl.edu	37	3	158364551	158364551	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024996.5	+1	reviewed	p.I129	0.991	508	0%	316	24.1%	-	-	-	-	-	HMMPfam_GTP_EFTU,superfamily_SSF52540
GFM1	85476	genome.wustl.edu	37	3	158364697	158364697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024996.5	+1	reviewed	p.R178Q	1.000	239	0.4%	187	58.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_SSF52540
GFM1	85476	genome.wustl.edu	37	3	158376800	158376800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024996.5	+1	reviewed	p.K391N	1.000	272	0%	147	53.1%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor
SCHIP1	29970	genome.wustl.edu	37	3	159605648	159605648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014575.2	+1	provisional	p.V383G	1.000	149	0%	100	52%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_SCHIP-1
IL12A	3592	genome.wustl.edu	37	3	159713299	159713299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000882.2	+1	reviewed	p.R239W	0.533	326	0%	226	60.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IL12,superfamily_4_helix_cytokine
IFT80	57560	genome.wustl.edu	37	3	160018827	160018827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020800.1	-1	validated	p.L387F	1.000	104	0%	52	19.2%	-	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	superfamily_Cyt_cd1_haem_C
SMC4	10051	genome.wustl.edu	37	3	160141267	160141267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002800.1	+1	validated	p.R692C	1.000	187	0.5%	115	29.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160151484	160151484	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002800.1	+1	validated	p.R1252*	1.000	126	0.8%	90	43.3%	-	-	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARL14	80117	genome.wustl.edu	37	3	160395186	160395186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025047.2	+1	validated	p.L18I	0.982	143	0%	94	19.1%	-	-	benign(0.095)	deleterious(0.05)	neutral(0.352)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPM1L	151742	genome.wustl.edu	37	3	160474348	160474348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139245.2	+1	provisional	p.K84N	1.000	183	0%	132	23.5%	-	-	benign(0.019)	tolerated(0.18)	neutral(0.057)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
PPM1L	151742	genome.wustl.edu	37	3	160786805	160786805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139245.2	+1	provisional	p.R315*	0.998	149	0%	136	22.8%	-	-	-	-	-	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
NMD3	51068	genome.wustl.edu	37	3	160958906	160958906	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015938.3	+1	provisional	p.R276*	1.000	381	0%	324	47.5%	-	-	-	-	-	NULL
OTOL1	131149	genome.wustl.edu	37	3	161221185	161221185	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080440.1	+1	provisional	p.E297*	0.999	62	0%	40	42.5%	-	-	-	-	-	HMMPfam_Collagen
SI	6476	genome.wustl.edu	37	3	164709991	164709991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.N1653D	0.956	270	0%	153	48.4%	-	-	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_Glyco_hydro_31
SI	6476	genome.wustl.edu	37	3	164710173	164710173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.E1618D	0.011	138	0%	79	51.9%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Glyco_hydro_31
SI	6476	genome.wustl.edu	37	3	164730802	164730802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.I1343T	1.000	308	0%	231	16.5%	-	-	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164735407	164735407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.R1230C	1.000	162	0%	100	31%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164737500	164737500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.R1105C	0.489	302	0%	217	55.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SI	6476	genome.wustl.edu	37	3	164758844	164758844	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.L681	1.000	338	0%	165	47.3%	-	-	-	-	-	HMMPfam_Glyco_hydro_31
SI	6476	genome.wustl.edu	37	3	164783129	164783129	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.E243*	1.000	158	0%	83	16.9%	-	-	-	-	-	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164905717	164905717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.E968K	1.000	281	0%	218	19.7%	-	-	possibly_damaging(0.65)	deleterious(0.02)	deleterious(0.611)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906171	164906171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.K816N	1.000	208	0%	167	16.2%	-	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906571	164906571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.R683Q	0.961	96	0%	63	20.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906620	164906620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.A667S	0.995	110	0%	66	16.7%	-	-	benign(0.002)	tolerated(1)	-	NULL
BCHE	590	genome.wustl.edu	37	3	165547630	165547630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000055.2	-1	reviewed	p.L398I	0.003	153	0%	105	45.7%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_COesterase,superfamily_SSF53474
ZBBX	79740	genome.wustl.edu	37	3	167000074	167000074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024687.2	-1	validated	p.T697A	0.019	227	0%	153	52.3%	-	-	benign(0.018)	tolerated(1)	neutral(0.001)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167031821	167031821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024687.2	-1	validated	p.R453I	0.829	307	0%	173	45.1%	-	-	benign(0.154)	tolerated(0.19)	neutral(0.063)	NULL
SERPINI2	5276	genome.wustl.edu	37	3	167159927	167159927	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006217.3	-1	reviewed	p.E396	0.000	588	0%	418	23.4%	-	-	-	-	-	NULL
LRRIQ4	344657	genome.wustl.edu	37	3	169540109	169540109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080460.1	+1	provisional	p.P134S	0.928	92	0%	88	26.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
LRRC31	79782	genome.wustl.edu	37	3	169569548	169569548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024727.2	-1	validated	p.L340I	1.000	359	0%	246	48%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNI-like
SEC62	7095	genome.wustl.edu	37	3	169684627	169684627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003262.3	+1	reviewed	p.R6K	1.000	62	0%	53	52.8%	-	-	possibly_damaging(0.496)	tolerated(0.35)	neutral(0.186)	NULL
SEC62	7095	genome.wustl.edu	37	3	169700996	169700996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003262.3	+1	reviewed	p.F168L	1.000	175	0%	93	49.5%	-	-	benign(0.02)	deleterious(0.05)	neutral(0.346)	HMMPfam_Sec62
PHC3	80012	genome.wustl.edu	37	3	169815159	169815159	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000484068	-1	known	p.S115L	0.868	261	0%	239	50.6%	-	-	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
PHC3	80012	genome.wustl.edu	37	3	169820611	169820611	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000484068	-1	known	p.R26Q	0.825	153	0%	127	14.2%	-	-	-	-	-	NULL
PHC3	80012	genome.wustl.edu	37	3	169820637	169820637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.R852C	1.000	153	0%	136	30.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PHC3	80012	genome.wustl.edu	37	3	169890478	169890478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.R68Q	1.000	108	0%	99	51.5%	-	-	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	NULL
PRKCI	5584	genome.wustl.edu	37	3	169993030	169993030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002740.5	+1	reviewed	p.N220K	1.000	296	0%	166	27.1%	-	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
PRKCI	5584	genome.wustl.edu	37	3	170015162	170015162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002740.5	+1	reviewed	p.R523Q	1.000	317	0%	243	33.3%	-	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMSmart_S_TK_X,superfamily_Kinase_like
SKIL	6498	genome.wustl.edu	37	3	170078829	170078829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005414.3	+1	validated	p.R237Q	0.989	132	0%	169	12.4%	-	-	possibly_damaging(0.549)	tolerated(0.29)	neutral(0.215)	NULL
SLC7A14	57709	genome.wustl.edu	37	3	170198389	170198389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020949.2	-1	validated	p.T561M	0.996	249	0%	224	17%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC7A14	57709	genome.wustl.edu	37	3	170216566	170216566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020949.2	-1	validated	p.L217F	1.000	203	0%	177	30.5%	-	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	HMMPfam_AA_permease
EIF5A2	56648	genome.wustl.edu	37	3	170612149	170612149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020390.5	-1	validated	p.L112I	1.000	583	0%	414	16.7%	-	-	possibly_damaging(0.511)	tolerated(0.21)	neutral(0.216)	superfamily_Nucleic acid-binding proteins,HMMPfam_eIF-5a
SLC2A2	6514	genome.wustl.edu	37	3	170716177	170716177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000340.1	-1	reviewed	p.F393L	0.000	43	0%	43	18.6%	-	-	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
SLC2A2	6514	genome.wustl.edu	37	3	170732290	170732290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000340.1	-1	reviewed	p.F113L	0.998	364	0%	296	26.7%	-	-	possibly_damaging(0.942)	tolerated(0.09)	deleterious(0.683)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
TNIK	23043	genome.wustl.edu	37	3	170784372	170784372	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.T1284	1.000	184	0.5%	125	48.8%	-	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
TNIK	23043	genome.wustl.edu	37	3	170784492	170784492	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.V1244	1.000	216	0%	143	48.3%	-	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
TNIK	23043	genome.wustl.edu	37	3	170789079	170789079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.A1161V	1.000	409	0%	179	44.1%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_CNH,HMMSmart_SM00036
TNIK	23043	genome.wustl.edu	37	3	170811697	170811697	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.G884	0.972	314	0%	340	20.9%	-	-	-	-	-	NULL
TNIK	23043	genome.wustl.edu	37	3	170828505	170828505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.R761Q	1.000	212	0%	156	21.8%	-	-	possibly_damaging(0.902)	deleterious(0.02)	deleterious(0.740)	NULL
TNIK	23043	genome.wustl.edu	37	3	170906591	170906591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.R180Q	1.000	289	0.3%	177	31.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TMEM212	389177	genome.wustl.edu	37	3	171571594	171571594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334567	+1	known	p.V166A	0.000	286	0%	211	46.9%	-	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
TMEM212	389177	genome.wustl.edu	37	3	171571641	171571641	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334567	+1	known	e3+1	0.165	179	0%	147	31.3%	-	-	-	-	-	-
FNDC3B	64778	genome.wustl.edu	37	3	172065015	172065015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135095.1	+1	validated	p.S793Y	0.869	202	0%	172	18%	-	-	benign(0.012)	deleterious(0.01)	neutral(0.406)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FNDC3B	64778	genome.wustl.edu	37	3	172070597	172070597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135095.1	+1	validated	p.F840S	1.000	116	0%	97	20.6%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GHSR	2693	genome.wustl.edu	37	3	172165564	172165564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198407.2	-1	reviewed	p.V214M	1.000	41	0%	63	22.2%	-	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NCEH1	57552	genome.wustl.edu	37	3	172351691	172351691	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424772	-1	known	p.S298L	0.000	300	0%	255	10.6%	-	-	-	-	-	superfamily_alpha/beta-Hydrolases
NCEH1	57552	genome.wustl.edu	37	3	172365816	172365816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020792.4	-1	validated	p.S108Y	0.993	182	0%	128	52.3%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ECT2	1894	genome.wustl.edu	37	3	172480549	172480549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018098.4	+1	reviewed	p.D289N	1.000	401	0%	270	19.3%	-	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
SPATA16	83893	genome.wustl.edu	37	3	172643217	172643217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031955.5	-1	reviewed	p.L383I	1.000	311	0.6%	180	23.9%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NLGN1	22871	genome.wustl.edu	37	3	173993121	173993121	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014932.2	+1	reviewed	p.G221	0.446	284	0%	171	44.4%	-	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
NLGN1	22871	genome.wustl.edu	37	3	173996992	173996992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014932.2	+1	reviewed	p.D401Y	1.000	485	0%	368	23.9%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_COesterase,superfamily_SSF53474
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	rs121913287		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R88Q	1.000	215	0%	100	52%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
MFN1	55669	genome.wustl.edu	37	3	179096177	179096177	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033540.2	+1	reviewed	p.R460*	0.994	336	0%	223	53.8%	-	-	-	-	-	NULL
USP13	8975	genome.wustl.edu	37	3	179426714	179426714	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003940.2	+1	validated	p.V258	1.000	255	0%	193	28.5%	-	-	-	-	-	HMMPfam_zf-UBP,HMMSmart_ZnF_UBP
USP13	8975	genome.wustl.edu	37	3	179460015	179460015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003940.2	+1	validated	p.D471N	1.000	193	0%	133	14.3%	-	-	possibly_damaging(0.592)	tolerated(0.06)	deleterious(0.527)	HMMPfam_UCH,superfamily_SSF54001
USP13	8975	genome.wustl.edu	37	3	179483592	179483592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003940.2	+1	validated	p.S790Y	1.000	305	0%	252	23.8%	-	-	possibly_damaging(0.628)	deleterious(0)	deleterious(0.663)	HMMPfam_UCH,superfamily_SSF54001
PEX5L	51555	genome.wustl.edu	37	3	179605499	179605499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016559.1	-1	provisional	p.S91L	1.000	456	0%	291	26.1%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
TTC14	151613	genome.wustl.edu	37	3	180324151	180324151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133462.3	+1	validated	p.R347H	1.000	320	0%	223	53.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TTC14	151613	genome.wustl.edu	37	3	180328076	180328076	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133462.3	+1	validated	p.K687Q	0.529	191	0%	97	30.9%	-	-	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	NULL
TTC14	151613	genome.wustl.edu	37	3	180328324	180328324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133462.3	+1	validated	p.K769N	1.000	27	0%	19	57.9%	-	-	possibly_damaging(0.672)	deleterious(0)	deleterious(0.682)	NULL
ATP11B	23200	genome.wustl.edu	37	3	182554145	182554145	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.R147*	1.000	342	0%	208	47.6%	-	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
ATP11B	23200	genome.wustl.edu	37	3	182566330	182566330	+	Missense_Mutation	SNP	G	G	A	rs73177313	byCluster;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.R279Q	1.000	211	0%	79	32.9%	-	-	probably_damaging(0.997)	tolerated(0.42)	deleterious(0.480)	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182941975	182941975	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015078.2	-1	validated	p.E707*	1.000	173	0%	130	23.8%	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
B3GNT5	84002	genome.wustl.edu	37	3	182988238	182988238	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032047.4	+1	reviewed	p.F218V	0.998	347	0%	240	60%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Galactosyl_T
KLHL6	89857	genome.wustl.edu	37	3	183210354	183210354	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130446.2	-1	validated	p.L498	0.580	405	0.2%	361	23.5%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL24	54800	genome.wustl.edu	37	3	183368322	183368322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017644.3	+1	validated	p.R60C	1.000	315	0.3%	259	16.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_POZ domain,HMMPfam_BTB
KLHL24	54800	genome.wustl.edu	37	3	183368370	183368370	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017644.3	+1	validated	p.E76*	1.000	355	0.3%	339	26.3%	-	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
ABCC5	10057	genome.wustl.edu	37	3	183643396	183643396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005688.2	-1	reviewed	p.R1387C	1.000	371	0%	344	28.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC5	10057	genome.wustl.edu	37	3	183669677	183669677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005688.2	-1	reviewed	p.L928M	0.999	189	0%	165	12.1%	-	-	benign(0.37)	tolerated(0.19)	neutral(0.167)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC5	10057	genome.wustl.edu	37	3	183689509	183689509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005688.2	-1	reviewed	p.R535C	0.137	318	0%	308	31.2%	-	-	benign(0.219)	tolerated(0.05)	neutral(0.367)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
HTR3E	285242	genome.wustl.edu	37	3	183818400	183818400	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182589.2	+1	reviewed	p.Q80	0.028	179	0%	186	31.2%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HTR3E	285242	genome.wustl.edu	37	3	183822644	183822644	+	Missense_Mutation	SNP	G	G	T	rs7432287	byCluster	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182589.2	+1	reviewed	p.K168N	0.427	199	0%	124	26.6%	-	-	benign(0.002)	tolerated(0.59)	neutral(0.004)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ECE2	9718	genome.wustl.edu	37	3	183975340	183975340	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014693.3	+1	validated	p.V92	0.019	57	0%	81	19.8%	-	-	-	-	-	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ECE2	9718	genome.wustl.edu	37	3	183995068	183995068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014693.3	+1	validated	p.A216T	1.000	194	0%	129	56.6%	-	-	benign(0.148)	tolerated(0.35)	neutral(0.034)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
ECE2	9718	genome.wustl.edu	37	3	184008593	184008593	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014693.3	+1	validated	p.F711	0.881	211	0%	196	25.5%	-	-	-	-	-	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
PSMD2	5708	genome.wustl.edu	37	3	184022093	184022093	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002808.3	+1	reviewed	p.L485	1.000	508	0%	375	27.7%	-	-	-	-	-	HMMPfam_PC_rep,superfamily_ARM-type_fold
PSMD2	5708	genome.wustl.edu	37	3	184025170	184025170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002808.3	+1	reviewed	p.R687Q	1.000	332	0%	242	48.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM-type_fold
EIF4G1	1981	genome.wustl.edu	37	3	184039155	184039155	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182917.3	+1	reviewed	p.S261	0.997	83	0%	61	60.7%	-	-	-	-	-	NULL
EIF4G1	1981	genome.wustl.edu	37	3	184039863	184039863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182917.3	+1	reviewed	p.Q497H	1.000	65	0%	43	48.8%	-	-	probably_damaging(0.961)	tolerated(0.38)	neutral(0.422)	NULL
CLCN2	1181	genome.wustl.edu	37	3	184072044	184072044	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004366.4	-1	reviewed	p.F522	1.000	61	0%	77	19.5%	-	-	-	-	-	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
THPO	7066	genome.wustl.edu	37	3	184090770	184090770	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000353488	-1	known	e6-2	1.000	296	0%	195	50.3%	-	-	-	-	-	-
MAGEF1	64110	genome.wustl.edu	37	3	184428958	184428958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022149.4	-1	reviewed	p.F218V	0.028	101	0%	104	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGE
VPS8	23355	genome.wustl.edu	37	3	184550556	184550556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009921.2	+1	validated	p.D101A	1.000	390	0%	317	54.9%	-	-	possibly_damaging(0.902)	tolerated(0.27)	neutral(0.390)	superfamily_WD40_like
VPS8	23355	genome.wustl.edu	37	3	184689512	184689512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009921.2	+1	validated	p.S1131L	0.997	344	0%	201	24.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_ARM-type_fold
EHHADH	1962	genome.wustl.edu	37	3	184910155	184910155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001966.3	-1	reviewed	p.E677D	1.000	263	0%	240	56.2%	-	-	benign(0.009)	tolerated(0.28)	neutral(0.032)	HMMPfam_3HCDH,superfamily_6DGDH_C_like
MAP3K13	9175	genome.wustl.edu	37	3	185167750	185167750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004721.3	+1	reviewed	p.S358Y	1.000	194	0%	152	15.1%	-	-	possibly_damaging(0.9)	deleterious(0.04)	deleterious(0.706)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAP3K13	9175	genome.wustl.edu	37	3	185190872	185190872	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004721.3	+1	reviewed	p.R585*	1.000	321	0%	250	25.2%	-	-	-	-	-	NULL
SENP2	59343	genome.wustl.edu	37	3	185332471	185332471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021627.2	+1	validated	p.K351N	0.978	287	0%	161	13.7%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
DGKG	1608	genome.wustl.edu	37	3	185986618	185986618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001346.2	-1	reviewed	p.A363V	1.000	80	0%	65	58.5%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
KNG1	3827	genome.wustl.edu	37	3	186445126	186445126	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102416.2	+1	reviewed	p.W222*	0.007	279	0%	194	29.4%	-	-	-	-	-	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
KNG1	3827	genome.wustl.edu	37	3	186459434	186459434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102416.2	+1	reviewed	p.R417W	0.217	240	0%	118	53.4%	-	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
RFC4	5984	genome.wustl.edu	37	3	186515334	186515334	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002916.3	-1	reviewed	p.E94*	1.000	281	0%	134	23.1%	-	-	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
RFC4	5984	genome.wustl.edu	37	3	186515394	186515394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002916.3	-1	reviewed	p.L74I	1.000	247	0%	112	54.5%	-	-	possibly_damaging(0.874)	deleterious(0)	deleterious(0.784)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
MASP1	5648	genome.wustl.edu	37	3	186937873	186937873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001879.5	-1	reviewed	p.G696R	0.000	254	0%	229	28.8%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	superfamily_Trypsin-like serine proteases
MASP1	5648	genome.wustl.edu	37	3	186978570	186978570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139125.3	-1	reviewed	p.R169H	1.000	126	0%	198	29.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_EGF_CA,PatternScan_EGF_2,superfamily_SSF57196
RTP4	64108	genome.wustl.edu	37	3	187088868	187088868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022147.2	+1	validated	p.D150Y	0.979	114	0%	81	25.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RTP2	344892	genome.wustl.edu	37	3	187416330	187416330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004312.2	-1	validated	p.V212I	0.012	219	0%	119	30.3%	-	-	benign(0)	tolerated(1)	-	NULL
BCL6	604	genome.wustl.edu	37	3	187444578	187444578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130845.1	-1	reviewed	p.R550H	1.000	188	0%	164	51.2%	-	-	probably_damaging(0.98)	tolerated(0.09)	deleterious(0.720)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TP63	8626	genome.wustl.edu	37	3	189526184	189526184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003722.4	+1	reviewed	p.A150T	1.000	331	0%	291	21.3%	-	-	possibly_damaging(0.887)	tolerated(0.14)	deleterious(0.597)	NULL
CLDN1	9076	genome.wustl.edu	37	3	190027961	190027961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021101.4	-1	validated	p.A157V	1.000	231	0%	159	30.2%	-	-	benign(0.008)	tolerated(0.09)	neutral(0.296)	HMMPfam_PMP22_Claudin
ATP13A4	84239	genome.wustl.edu	37	3	193176849	193176849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000295548	-1	known	p.E565D	0.009	113	0%	111	50.5%	-	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
LRRC15	131578	genome.wustl.edu	37	3	194080983	194080983	+	Missense_Mutation	SNP	C	C	A	rs13060627	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135057.2	-1	validated	p.V270F	1.000	875	0.1%	610	52.6%	-	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
LRRC15	131578	genome.wustl.edu	37	3	194081610	194081610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135057.2	-1	validated	p.A61T	0.974	73	0%	82	26.8%	-	-	benign(0.038)	tolerated(0.34)	neutral(0.025)	superfamily_L domain-like
ACAP2	23527	genome.wustl.edu	37	3	195022857	195022857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012287.5	-1	validated	p.G388E	0.998	169	0%	164	55.5%	-	-	benign(0.014)	tolerated(0.22)	neutral(0.043)	NULL
ACAP2	23527	genome.wustl.edu	37	3	195063364	195063364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012287.5	-1	validated	p.D122Y	1.000	446	0%	328	24.4%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
PPP1R2	5504	genome.wustl.edu	37	3	195251617	195251617	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006241.4	-1	validated	p.K103T	1.000	264	0%	193	28.5%	-	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	HMMPfam_IPP-2
MUC4	4585	genome.wustl.edu	37	3	195477766	195477766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.T5161A	0.000	31	0%	45	26.7%	-	-	unknown(0)	tolerated(0.25)	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195507686	195507686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.D3461N	0.000	719	5.1%	357	21.8%	-	-	possibly_damaging(0.509)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195513158	195513158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.D1765N	0.059	1384	0.9%	733	21.6%	-	-	possibly_damaging(0.748)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195513590	195513590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.D1621N	0.000	1367	3%	690	19.6%	-	-	possibly_damaging(0.748)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195517036	195517036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.S472Y	0.000	328	0.6%	258	30.6%	-	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
UBXN7	26043	genome.wustl.edu	37	3	196098832	196098832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015562.1	-1	validated	p.N184D	1.000	325	0%	259	25.9%	-	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00594
FBXO45	200933	genome.wustl.edu	37	3	196304406	196304406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105573.1	+1	validated	p.R134Q	1.000	127	0%	79	55.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF81383
LRRC33	375387	genome.wustl.edu	37	3	196387102	196387102	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198565.1	+1	provisional	p.I196	0.152	34	0%	41	56.1%	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
PAK2	5062	genome.wustl.edu	37	3	196529948	196529948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002577.4	+1	reviewed	p.K117Q	1.000	273	0%	168	18.5%	-	-	possibly_damaging(0.54)	tolerated(0.38)	neutral(0.201)	HMMPfam_PBD
SENP5	205564	genome.wustl.edu	37	3	196612754	196612754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152699.4	+1	validated	p.E234D	1.000	98	0%	80	21.2%	-	-	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	NULL
DLG1	1739	genome.wustl.edu	37	3	196842809	196842809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004087.2	-1	validated	p.R511S	1.000	236	0%	163	22.1%	-	-	possibly_damaging(0.741)	tolerated(0.15)	deleterious(0.512)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
DLG1	1739	genome.wustl.edu	37	3	196869606	196869606	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004087.2	-1	validated	p.E224*	1.000	301	0%	194	24.7%	-	-	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
KIAA0226	9711	genome.wustl.edu	37	3	197431449	197431449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145642.2	-1	validated	p.L83F	1.000	108	0%	97	53.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00593
IQCG	84223	genome.wustl.edu	37	3	197618315	197618315	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134435.1	-1	validated	e9+2	1.000	630	0%	510	29.6%	-	-	-	-	-	-
IQCG	84223	genome.wustl.edu	37	3	197619579	197619579	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134435.1	-1	validated	p.E339*	1.000	946	0%	904	51.1%	-	-	-	-	-	NULL
RPL35A	6165	genome.wustl.edu	37	3	197678155	197678155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000996.2	+1	reviewed	p.R46I	1.000	331	0%	222	20.7%	-	-	possibly_damaging(0.532)	deleterious(0)	deleterious(0.625)	HMMPfam_Ribosomal_L35Ae
ZNF732	654254	genome.wustl.edu	37	4	265027	265027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137608.1	-1	provisional	p.R540I	0.002	224	0%	133	37.6%	-	-	benign(0.084)	tolerated(0.32)	neutral(0.030)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF732	654254	genome.wustl.edu	37	4	266364	266364	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137608.1	-1	provisional	p.S94	0.000	207	0%	97	36.1%	-	-	-	-	-	NULL
ZNF732	654254	genome.wustl.edu	37	4	289914	289914	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137608.1	-1	provisional	p.E12*	0.131	334	0%	173	30.1%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF721	170960	genome.wustl.edu	37	4	435770	435770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133474.2	-1	validated	p.R829I	0.999	213	0%	144	13.2%	-	-	benign(0.058)	tolerated(0.35)	neutral(0.024)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	436636	436636	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133474.2	-1	validated	p.Q540	0.000	164	0%	161	36.6%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	436694	436694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133474.2	-1	validated	p.R521I	0.824	188	0%	163	34.4%	-	-	benign(0.007)	tolerated(0.23)	neutral(0.042)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	436992	436992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133474.2	-1	validated	p.R422C	0.192	418	0%	251	40.2%	-	-	benign(0.007)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	437198	437198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133474.2	-1	validated	p.R353I	0.219	367	0%	268	11.2%	-	-	benign(0.16)	tolerated(0.2)	neutral(0.064)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PIGG	54872	genome.wustl.edu	37	4	515606	515606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127178.1	+1	validated	p.S497L	0.022	636	0%	319	35.1%	-	-	benign(0.014)	deleterious(0.02)	neutral(0.384)	NULL
PDE6B	5158	genome.wustl.edu	37	4	648636	648636	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000283.3	+1	reviewed	p.I317	0.601	199	0%	155	38.1%	-	-	-	-	-	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
PCGF3	10336	genome.wustl.edu	37	4	737366	737366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006315.4	+1	reviewed	p.R123W	1.000	213	0%	93	32.3%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
GAK	2580	genome.wustl.edu	37	4	870896	870896	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005255.2	-1	validated	p.G652	0.755	75	0%	26	23.1%	-	-	-	-	-	superfamily_C2_CaLB,HMMPfam_PTEN_C2
GAK	2580	genome.wustl.edu	37	4	898502	898502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005255.2	-1	validated	p.K150E	1.000	111	0%	94	33%	-	-	possibly_damaging(0.825)	deleterious(0.03)	deleterious(0.677)	superfamily_Kinase_like,HMMPfam_Pkinase
TMEM175	84286	genome.wustl.edu	37	4	951744	951744	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505148	+1	known	p.R162C	0.984	18	0%	25	24%	-	-	-	-	-	HMMPfam_DUF1211
FGFRL1	53834	genome.wustl.edu	37	4	1018893	1018893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004356.2	+1	reviewed	p.D425N	0.977	18	0%	16	37.5%	-	-	possibly_damaging(0.88)	tolerated(0.5)	neutral(0.353)	NULL
CTBP1	1487	genome.wustl.edu	37	4	1209938	1209938	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504092	-1	known	p.L48I	0.997	78	0%	54	35.2%	-	-	-	-	-	HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-binding Rossmann-fold domains
KIAA1530	57654	genome.wustl.edu	37	4	1341887	1341887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020894.2	+1	validated	p.Q3R	0.983	152	0%	75	36%	-	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
TACC3	10460	genome.wustl.edu	37	4	1739034	1739034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006342.1	+1	reviewed	p.F605L	0.113	333	0%	153	35.3%	-	-	benign(0.235)	tolerated(1)	neutral(0.024)	NULL
FGFR3	2261	genome.wustl.edu	37	4	1806134	1806134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000142.4	+1	reviewed	p.L385M	1.000	152	0%	127	29.1%	-	-	possibly_damaging(0.867)	tolerated(0.12)	deleterious(0.597)	NULL
LETM1	3954	genome.wustl.edu	37	4	1827346	1827346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012318.2	-1	reviewed	p.R382Q	1.000	51	0%	48	10.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LETM1
POLN	353497	genome.wustl.edu	37	4	2210162	2210162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181808.2	-1	validated	p.P89H	0.002	77	0%	38	28.9%	-	-	possibly_damaging(0.46)	deleterious(0.01)	deleterious(0.556)	NULL
FAM193A	8603	genome.wustl.edu	37	4	2691399	2691399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003704.3	+1	validated	p.N542S	1.000	218	0%	140	34.3%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
SH3BP2	6452	genome.wustl.edu	37	4	2826874	2826874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122681.1	+1	reviewed	p.R127G	0.993	92	0%	62	35.5%	-	-	possibly_damaging(0.816)	deleterious(0.01)	deleterious(0.714)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SH3BP2	6452	genome.wustl.edu	37	4	2833311	2833311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122681.1	+1	reviewed	p.D419N	0.998	57	0%	39	28.2%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
HTT	3064	genome.wustl.edu	37	4	3101000	3101000	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002111.6	+1	reviewed	e3-1	1.000	223	0%	150	28.7%	-	-	-	-	-	-
HGFAC	3083	genome.wustl.edu	37	4	3446586	3446586	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001528.2	+1	reviewed	p.Y294*	0.996	14	0%	11	63.6%	-	-	-	-	-	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
DOK7	285489	genome.wustl.edu	37	4	3494962	3494962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173660.4	+1	reviewed	p.D417Y	0.686	10	0%	13	53.8%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
OTOP1	133060	genome.wustl.edu	37	4	4199295	4199295	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177998.1	-1	provisional	p.T422	1.000	163	0%	72	20.8%	-	-	-	-	-	HMMPfam_DUF270
TMEM128	85013	genome.wustl.edu	37	4	4242176	4242176	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032927.2	-1	provisional	p.L66	0.000	218	0%	98	23.5%	-	-	-	-	-	NULL
STK32B	55351	genome.wustl.edu	37	4	5053599	5053599	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018401.1	+1	provisional	p.G3	0.999	88	0%	59	37.3%	-	-	-	-	-	NULL
EVC2	132884	genome.wustl.edu	37	4	5566994	5566994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147127.4	-1	reviewed	p.R1217I	0.932	364	0%	234	19.2%	-	-	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	NULL
EVC2	132884	genome.wustl.edu	37	4	5570209	5570209	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147127.4	-1	reviewed	p.S1173	0.000	31	0%	24	41.7%	-	-	-	-	-	NULL
CRMP1	1400	genome.wustl.edu	37	4	5843053	5843053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014809.1	-1	reviewed	p.A379T	0.127	167	0.6%	130	40%	-	-	benign(0.006)	tolerated(0.16)	neutral(0.059)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP1	152789	genome.wustl.edu	37	4	6031507	6031507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099433.1	-1	validated	p.R794I	1.000	431	0%	254	33.9%	-	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6050642	6050642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099433.1	-1	validated	p.R657I	1.000	326	0%	158	32.9%	-	-	benign(0.418)	deleterious(0.04)	deleterious(0.484)	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6087177	6087177	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099433.1	-1	validated	p.I268	0.008	125	0%	66	54.5%	-	-	-	-	-	NULL
WFS1	7466	genome.wustl.edu	37	4	6304042	6304042	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006005.3	+1	reviewed	p.F840	1.000	14	0%	24	54.2%	-	-	-	-	-	NULL
PPP2R2C	5522	genome.wustl.edu	37	4	6377629	6377629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020416.3	-1	reviewed	p.E122K	0.993	386	0.3%	196	29.6%	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N
MAN2B2	23324	genome.wustl.edu	37	4	6612845	6612845	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505907	+1	known	p.S800L	0.002	91	0%	72	33.3%	-	-	-	-	-	superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C
MRFAP1L1	114932	genome.wustl.edu	37	4	6711021	6711021	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203462.2	-1	validated	p.E112	0.997	169	0%	105	32.4%	-	-	-	-	-	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6864664	6864664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100590.1	+1	validated	p.S852L	0.853	99	0%	40	35%	-	-	benign(0.047)	tolerated(0.07)	neutral(0.322)	NULL
CCDC96	257236	genome.wustl.edu	37	4	7043144	7043144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153376.2	-1	validated	p.L508I	1.000	188	0%	110	42.7%	-	-	probably_damaging(0.958)	tolerated(0.18)	neutral(0.458)	NULL
SORCS2	57537	genome.wustl.edu	37	4	7716052	7716052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020777.2	+1	reviewed	p.S692L	0.458	127	0%	79	32.9%	-	-	possibly_damaging(0.952)	tolerated(0.07)	deleterious(0.715)	HMMSmart_SM00602
AFAP1	60312	genome.wustl.edu	37	4	7840265	7840265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134647.1	-1	reviewed	p.E238K	1.000	287	0.3%	177	43.5%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
MIR95	407052	genome.wustl.edu	37	4	8007032	8007032	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385072	-1	known	NULL	1.000	71	0%	62	14.5%	-	-	-	-	-	-
CPZ	8532	genome.wustl.edu	37	4	8613888	8613888	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014447.1	+1	reviewed	p.G454	1.000	117	0%	48	16.7%	-	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
SLC2A9	56606	genome.wustl.edu	37	4	9828135	9828135	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020041.2	-1	reviewed	p.K503	0.996	370	0%	215	34.9%	-	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
WDR1	9948	genome.wustl.edu	37	4	10089430	10089430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443592	-1	known	p.A136V	1.000	109	0%	70	41.4%	-	-	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10447440	10447440	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053042.2	-1	validated	p.S171	0.560	310	0%	176	36.9%	-	-	-	-	-	HMMSmart_ZnF_C2H2
RAB28	9364	genome.wustl.edu	37	4	13371494	13371494	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004249.3	-1	reviewed	e7+1	1.000	554	0%	249	39.4%	-	-	-	-	-	-
RAB28	9364	genome.wustl.edu	37	4	13462378	13462378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000511649	-1	known	p.E35*	1.000	253	0%	114	43.9%	-	-	unknown(0)	deleterious(0.02)	-	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
BOD1L	259282	genome.wustl.edu	37	4	13578611	13578611	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507943	-1	known	p.P72H	0.998	572	0%	263	35.7%	-	-	-	-	-	NULL
BOD1L	259282	genome.wustl.edu	37	4	13600954	13600954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.R2524C	0.000	188	0%	125	32%	-	-	possibly_damaging(0.825)	deleterious(0.01)	deleterious(0.718)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13603347	13603347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.T1726N	0.996	379	0%	247	35.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13605020	13605020	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.R1168S	0.006	176	0%	110	35.5%	-	-	benign(0.318)	deleterious(0.01)	deleterious(0.505)	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13605994	13605994	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.R844	1.000	679	0%	335	32.8%	-	-	-	-	-	superfamily_SSF81995
CC2D2A	57545	genome.wustl.edu	37	4	15480407	15480407	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080522.2	+1	reviewed	p.R34*	0.000	294	0%	144	37.5%	-	-	-	-	-	NULL
BST1	683	genome.wustl.edu	37	4	15713434	15713434	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505785	+1	known	p.S48L	0.069	269	0%	146	45.2%	-	-	-	-	-	HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like
FGFBP2	83888	genome.wustl.edu	37	4	15964239	15964239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031950.3	-1	reviewed	p.L172M	0.000	165	0%	110	11.8%	-	-	possibly_damaging(0.664)	tolerated(0.1)	deleterious(0.521)	HMMPfam_FGF-BP1
PROM1	8842	genome.wustl.edu	37	4	16035049	16035049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006017.2	-1	reviewed	p.F129L	1.000	324	0%	132	17.4%	-	-	benign(0.017)	tolerated(1)	neutral(0.001)	HMMPfam_Prominin
CLRN2	645104	genome.wustl.edu	37	4	17528448	17528448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079827.2	+1	reviewed	p.V148M	0.732	181	0%	133	35.3%	-	-	benign(0.163)	deleterious(0.05)	neutral(0.360)	NULL
LAP3	51056	genome.wustl.edu	37	4	17581474	17581474	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015907.2	+1	validated	p.E44*	1.000	643	0%	261	33.3%	-	-	-	-	-	HMMPfam_Peptidase_M17_N,superfamily_Macro domain-like
LAP3	51056	genome.wustl.edu	37	4	17609065	17609065	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015907.2	+1	validated	p.F471	0.999	241	0%	141	22.7%	-	-	-	-	-	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
FAM184B	27146	genome.wustl.edu	37	4	17634215	17634215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015688.1	-1	validated	p.E1041D	0.903	452	0%	230	24.3%	-	-	benign(0.296)	tolerated(0.47)	neutral(0.102)	NULL
NCAPG	64151	genome.wustl.edu	37	4	17819656	17819656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022346.3	+1	validated	p.E355*	1.000	421	0%	227	33.9%	-	-	-	-	-	superfamily_ARM-type_fold
NCAPG	64151	genome.wustl.edu	37	4	17827032	17827032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022346.3	+1	validated	p.E501K	1.000	101	0%	27	37%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	superfamily_ARM-type_fold
NCAPG	64151	genome.wustl.edu	37	4	17844978	17844978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022346.3	+1	validated	p.R993Q	1.000	279	0%	93	38.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
SLIT2	9353	genome.wustl.edu	37	4	20255463	20255463	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.L9	1.000	36	0%	30	43.3%	-	-	-	-	-	NULL
SLIT2	9353	genome.wustl.edu	37	4	20570582	20570582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.D1015N	1.000	446	0%	189	30.7%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00274,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
GPR125	166647	genome.wustl.edu	37	4	22446630	22446630	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145290.2	-1	validated	p.P224	0.877	387	0%	206	33%	-	-	-	-	-	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
DHX15	1665	genome.wustl.edu	37	4	24578046	24578046	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001358.2	-1	reviewed	p.T109	0.545	727	0%	428	36.4%	-	-	-	-	-	NULL
LGI2	55203	genome.wustl.edu	37	4	25005628	25005628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018176.3	-1	validated	p.F361L	1.000	178	0%	124	10.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EPTP
ZCCHC4	29063	genome.wustl.edu	37	4	25363527	25363527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024936.2	+1	validated	p.R353Q	1.000	206	0%	94	33%	-	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
ZCCHC4	29063	genome.wustl.edu	37	4	25366692	25366692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024936.2	+1	validated	p.S437Y	0.998	454	0.2%	262	37%	-	-	possibly_damaging(0.648)	deleterious(0.01)	deleterious(0.633)	NULL
CCKAR	886	genome.wustl.edu	37	4	26483623	26483623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000730.2	-1	reviewed	p.K308N	1.000	207	0%	145	40%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TBC1D19	55296	genome.wustl.edu	37	4	26616040	26616040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018317.2	+1	validated	p.K61N	1.000	409	0%	162	29.6%	-	-	benign(0.025)	tolerated(0.27)	neutral(0.035)	NULL
STIM2	57620	genome.wustl.edu	37	4	27004572	27004572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020860.3	+1	reviewed	p.N363I	1.000	215	0%	85	27.1%	-	-	probably_damaging(0.99)	tolerated(0.31)	deleterious(0.469)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36069539	36069539	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	p.I1702S	0.000	151	0%	70	48.6%	-	-	benign(0.016)	tolerated(0.26)	neutral(0.035)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36081837	36081837	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	e30+1	1.000	200	0%	60	31.7%	-	-	-	-	-	-
ARAP2	116984	genome.wustl.edu	37	4	36150117	36150117	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	p.I970	1.000	380	0%	140	31.4%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36162190	36162190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	p.H778R	1.000	158	0%	72	29.2%	-	-	benign(0.019)	tolerated(0.28)	neutral(0.033)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
DTHD1	401124	genome.wustl.edu	37	4	36296529	36296529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136536.3	+1	validated	p.P214H	0.428	494	0%	271	34.7%	-	-	benign(0.01)	tolerated(0.24)	neutral(0.038)	NULL
DTHD1	401124	genome.wustl.edu	37	4	36307884	36307884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136536.3	+1	validated	p.S282I	0.994	434	0%	198	34.3%	-	-	probably_damaging(0.963)	deleterious(0.03)	deleterious(0.770)	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37446088	37446088	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144990.1	+1	validated	p.I826	1.000	163	0%	105	22.9%	-	-	-	-	-	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37446428	37446428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144990.1	+1	validated	p.P940S	1.000	220	0%	87	13.8%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37446732	37446732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144990.1	+1	validated	p.S1041Y	1.000	276	0%	217	40.1%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_WD40_like
KIAA1239	57495	genome.wustl.edu	37	4	37447888	37447888	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144990.1	+1	validated	p.L1426	0.988	57	0%	33	33.3%	-	-	-	-	-	superfamily_WD40_like
PGM2	55276	genome.wustl.edu	37	4	37851926	37851926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018290.3	+1	validated	p.K512E	0.997	140	0%	68	32.4%	-	-	benign(0)	tolerated(1)	-	superfamily_SSF55957
TBC1D1	23216	genome.wustl.edu	37	4	38016479	38016479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015173.2	+1	validated	p.R256Q	0.058	52	0%	26	23.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
TLR10	81793	genome.wustl.edu	37	4	38775052	38775052	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017388.1	-1	reviewed	p.E720D	0.013	263	0.4%	151	41.7%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
TLR10	81793	genome.wustl.edu	37	4	38775804	38775804	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017388.1	-1	reviewed	p.E470*	0.975	114	0%	56	33.9%	-	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
TLR10	81793	genome.wustl.edu	37	4	38776959	38776959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017388.1	-1	reviewed	p.Q85K	0.366	200	0%	117	35.9%	-	-	possibly_damaging(0.8)	deleterious(0.01)	deleterious(0.707)	superfamily_SSF52058
TLR1	7096	genome.wustl.edu	37	4	38798795	38798795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003263.3	-1	reviewed	p.S553Y	0.412	404	0%	253	37.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
FAM114A1	92689	genome.wustl.edu	37	4	38933985	38933985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138389.2	+1	validated	p.V485I	1.000	171	0%	63	23.8%	-	-	benign(0.079)	tolerated(0.51)	neutral(0.014)	NULL
FAM114A1	92689	genome.wustl.edu	37	4	38937390	38937390	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138389.2	+1	validated	p.T505	0.016	377	0%	157	29.3%	-	-	-	-	-	NULL
TMEM156	80008	genome.wustl.edu	37	4	38995490	38995490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024943.1	-1	provisional	p.N163H	0.000	450	0%	248	35.9%	-	-	probably_damaging(0.977)	tolerated(0.19)	neutral(0.468)	NULL
WDR19	57728	genome.wustl.edu	37	4	39230162	39230162	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025132.3	+1	reviewed	p.L612	1.000	273	0%	137	38%	-	-	-	-	-	NULL
WDR19	57728	genome.wustl.edu	37	4	39236493	39236493	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025132.3	+1	reviewed	p.F787	1.000	164	0%	117	38.5%	-	-	-	-	-	superfamily_TPR-like
RFC1	5981	genome.wustl.edu	37	4	39310281	39310281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002913.3	-1	reviewed	p.K620N	1.000	313	0%	201	38.8%	-	-	benign(0.058)	tolerated(0.17)	neutral(0.062)	superfamily_SSF52540
KLB	152831	genome.wustl.edu	37	4	39436111	39436111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175737.3	+1	validated	p.F369L	1.000	236	0%	136	41.2%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
N4BP2	55728	genome.wustl.edu	37	4	40133420	40133420	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018177.3	+1	reviewed	e11-1	1.000	195	0%	107	36.4%	-	-	-	-	-	-
N4BP2	55728	genome.wustl.edu	37	4	40146329	40146329	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513269	+1	known	p.A1314T	0.995	253	0%	202	46%	-	-	-	-	-	NULL
APBB2	323	genome.wustl.edu	37	4	40892410	40892410	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513611	-1	known	p.R469C	0.350	49	0%	27	22.2%	-	-	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
TMEM33	55161	genome.wustl.edu	37	4	41945832	41945832	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018126.2	+1	validated	e4+1	1.000	629	0%	398	33.9%	-	-	-	-	-	-
BEND4	389206	genome.wustl.edu	37	4	42119571	42119571	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207406.3	-1	validated	p.V523	1.000	114	0%	80	13.8%	-	-	-	-	-	NULL
BEND4	389206	genome.wustl.edu	37	4	42122245	42122245	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207406.3	-1	validated	p.N405H	1.000	279	0%	180	30%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
BEND4	389206	genome.wustl.edu	37	4	42145526	42145526	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207406.3	-1	validated	p.R325*	1.000	256	0%	174	40.2%	-	-	-	-	-	NULL
GUF1	60558	genome.wustl.edu	37	4	44682859	44682859	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021927.2	+1	validated	p.P142	0.486	214	0%	87	44.8%	-	-	-	-	-	HMMPfam_GTP_EFTU,superfamily_SSF52540
GABRA2	2555	genome.wustl.edu	37	4	46305504	46305504	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000807.2	-1	reviewed	p.E277*	1.000	341	0%	163	35.6%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA2	2555	genome.wustl.edu	37	4	46314665	46314665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000807.2	-1	reviewed	p.M108I	1.000	220	0%	74	36.5%	-	-	possibly_damaging(0.917)	tolerated(0.67)	neutral(0.370)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRA4	2557	genome.wustl.edu	37	4	46930352	46930352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000809.2	-1	reviewed	p.D519Y	1.000	258	0%	90	36.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA4	2557	genome.wustl.edu	37	4	46930480	46930480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000809.2	-1	reviewed	p.R476H	0.011	229	0%	137	47.4%	-	-	benign(0.002)	tolerated(0.25)	neutral(0.037)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA4	2557	genome.wustl.edu	37	4	46994927	46994927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508560	-1	known	p.E19*	1.000	290	0%	152	30.9%	-	-	-	-	-	NULL
ATP10D	57205	genome.wustl.edu	37	4	47514781	47514781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020453.3	+1	validated	p.R75Q	0.991	215	0%	127	35.4%	-	-	possibly_damaging(0.727)	tolerated(0.06)	deleterious(0.587)	NULL
ATP10D	57205	genome.wustl.edu	37	4	47556863	47556863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020453.3	+1	validated	p.D586N	1.000	243	0%	136	21.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like
CORIN	10699	genome.wustl.edu	37	4	47644968	47644968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504584	-1	known	p.L718I	0.000	17	0%	10	60%	-	-	unknown(0)	-	-	NULL
NFXL1	152518	genome.wustl.edu	37	4	47916107	47916107	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152995.4	-1	validated	p.E38	0.229	21	0%	10	60%	-	-	-	-	-	NULL
TEC	7006	genome.wustl.edu	37	4	48169833	48169833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003215.2	-1	reviewed	p.K211N	1.000	611	0%	321	35.2%	-	-	benign(0.364)	tolerated(0.18)	neutral(0.172)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain
SLAIN2	57606	genome.wustl.edu	37	4	48422245	48422245	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510595	+1	known	p.P97S	0.993	425	0%	249	37.8%	-	-	-	-	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48548278	48548278	+	Silent	SNP	G	G	A	rs190026204	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514617	-1	known	p.R565*	0.007	221	0%	78	21.8%	-	-	-	-	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48581084	48581084	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.E812*	1.000	321	0%	161	11.8%	-	-	-	-	-	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48588675	48588675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.G571S	1.000	420	0%	176	25.6%	-	-	benign(0.103)	tolerated(0.13)	neutral(0.261)	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48611819	48611819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.D145N	1.000	264	0%	104	24%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_ARM repeat
CWH43	80157	genome.wustl.edu	37	4	48990562	48990562	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025087.2	+1	validated	p.E38*	0.078	414	0%	255	15.7%	-	-	-	-	-	NULL
LRRC66	339977	genome.wustl.edu	37	4	52864054	52864054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024611.1	-1	provisional	p.I239T	0.000	398	0%	193	39.4%	-	-	benign(0.032)	tolerated(0.63)	neutral(0.005)	superfamily_SSF52058
SGCB	6443	genome.wustl.edu	37	4	52895948	52895948	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000232.4	-1	reviewed	p.R109*	1.000	243	0%	129	10.1%	-	-	-	-	-	HMMPfam_Sarcoglycan_1
SPATA18	132671	genome.wustl.edu	37	4	52926592	52926592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145263.2	+1	provisional	p.T32M	0.998	182	0.5%	93	28%	-	-	possibly_damaging(0.438)	deleterious(0)	deleterious(0.588)	NULL
SPATA18	132671	genome.wustl.edu	37	4	52938265	52938265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145263.2	+1	provisional	p.R234Q	0.002	132	0%	81	40.7%	-	-	benign(0.025)	tolerated(0.26)	neutral(0.035)	NULL
SPATA18	132671	genome.wustl.edu	37	4	52945942	52945942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145263.2	+1	provisional	p.K404N	1.000	336	0%	186	40.3%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
LOC100288413	100288413	genome.wustl.edu	37	4	53610159	53610159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342451.1	-1	model	p.R510H	0.000	332	0%	149	43.6%	-	-	-	-	-	NULL
SCFD2	152579	genome.wustl.edu	37	4	53751965	53751965	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152540.3	-1	validated	p.S637	0.277	190	0%	135	39.3%	-	-	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
LOC100130982	100130982	genome.wustl.edu	37	4	54244123	54244123	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001714018.1	-1	model	p.E102*	0.011	171	0%	117	34.2%	-	-	-	-	-	NULL
LNX1	84708	genome.wustl.edu	37	4	54364868	54364868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126328.1	-1	reviewed	p.I306M	1.000	137	0%	79	36.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PDGFRA	5156	genome.wustl.edu	37	4	55133488	55133488	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006206.4	+1	reviewed	p.I264	0.994	242	0%	120	34.2%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PDGFRA	5156	genome.wustl.edu	37	4	55151576	55151576	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006206.4	+1	reviewed	p.E788*	1.000	254	0%	111	39.6%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
KIT	3815	genome.wustl.edu	37	4	55589821	55589821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000222.2	+1	reviewed	p.E435K	0.997	262	0%	225	32%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
KDR	3791	genome.wustl.edu	37	4	55955594	55955594	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002253.2	-1	reviewed	p.R1117	0.970	376	0%	187	16%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KDR	3791	genome.wustl.edu	37	4	55980393	55980393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002253.2	-1	reviewed	p.G233E	0.000	220	0%	136	40.4%	-	-	benign(0)	tolerated(1)	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SRD5A3	79644	genome.wustl.edu	37	4	56225634	56225634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024592.3	+1	validated	p.L115I	0.973	497	0%	264	37.5%	-	-	benign(0.296)	deleterious(0.02)	deleterious(0.475)	NULL
TMEM165	55858	genome.wustl.edu	37	4	56277958	56277958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018475.3	+1	validated	p.V129M	0.995	200	0%	153	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0016
CLOCK	9575	genome.wustl.edu	37	4	56348918	56348918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004898.2	-1	reviewed	p.S12L	0.999	191	0%	111	29.7%	-	-	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	NULL
EXOC1	55763	genome.wustl.edu	37	4	56750054	56750054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024924.1	+1	reviewed	p.K430N	1.000	239	0%	68	23.5%	-	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_Sec3
CEP135	9662	genome.wustl.edu	37	4	56831971	56831971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025009.3	+1	validated	p.E330D	1.000	303	0%	114	36%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
CEP135	9662	genome.wustl.edu	37	4	56877994	56877994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025009.3	+1	validated	p.R882I	1.000	111	0%	42	26.2%	-	-	possibly_damaging(0.449)	deleterious(0.02)	deleterious(0.530)	superfamily_Prefoldin
KIAA1211	57482	genome.wustl.edu	37	4	57182119	57182119	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020722.1	+1	validated	p.T817	0.000	116	0%	63	38.1%	-	-	-	-	-	NULL
AASDH	132949	genome.wustl.edu	37	4	57215480	57215480	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181806.2	-1	validated	p.R813*	1.000	225	0.4%	119	31.1%	-	-	-	-	-	superfamily_Quinoprotein alcohol dehydrogenase-like
AASDH	132949	genome.wustl.edu	37	4	57220220	57220220	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181806.2	-1	validated	p.I456	0.981	249	0%	127	37%	-	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PAICS	10606	genome.wustl.edu	37	4	57314966	57314966	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079525.1	+1	reviewed	p.R229*	1.000	189	0%	103	37.9%	-	-	-	-	-	HMMPfam_SAICAR_synt,superfamily_SAICAR synthase-like
SRP72	6731	genome.wustl.edu	37	4	57349352	57349352	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006947.3	+1	validated	p.A291	0.969	291	0%	136	33.8%	-	-	-	-	-	NULL
REST	5978	genome.wustl.edu	37	4	57777484	57777484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005612.3	+1	reviewed	p.R227Q	0.993	133	0%	105	30.5%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_ZnF_C2H2
POLR2B	5431	genome.wustl.edu	37	4	57896453	57896453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000938.1	+1	reviewed	p.F1108C	1.000	370	0%	201	36.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_RNA_pol_Rpb2_7,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
IGFBP7	3490	genome.wustl.edu	37	4	57976267	57976267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001553.1	-1	provisional	p.G84V	1.000	4	0.000	9	0.444	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IB
LPHN3	23284	genome.wustl.edu	37	4	62800579	62800579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	p.N644D	1.000	218	0%	118	38.1%	-	-	benign(0.047)	deleterious(0)	neutral(0.448)	superfamily_Family A G protein-coupled receptor-like
LPHN3	23284	genome.wustl.edu	37	4	62849100	62849100	+	Splice_Site	SNP	G	G	T	rs61732946	byFrequency	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	e16-1	1.000	647	0.2%	350	15.1%	-	-	-	-	-	-
LOC644578	644578	genome.wustl.edu	37	4	64216511	64216511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_927694.2	+1	model	p.E282K	0.985	112	0%	48	47.9%	-	-	-	-	-	"HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
CENPC1	1060	genome.wustl.edu	37	4	68384938	68384938	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001812.2	-1	reviewed	p.K205T	1.000	149	0%	92	16.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STAP1	26228	genome.wustl.edu	37	4	68441174	68441174	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012108.2	+1	reviewed	p.A88	1.000	418	0%	212	34%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TMPRSS11D	9407	genome.wustl.edu	37	4	68719799	68719799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004262.2	-1	reviewed	p.R79I	0.001	315	0%	113	33.6%	-	-	probably_damaging(0.979)	tolerated(0.26)	neutral(0.456)	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
TMPRSS11F	389208	genome.wustl.edu	37	4	68930434	68930434	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207407.2	-1	validated	p.F328	0.998	117	0%	65	41.5%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
TMPRSS11F	389208	genome.wustl.edu	37	4	68938097	68938097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207407.2	-1	validated	p.S153I	0.325	278	0%	125	30.4%	-	-	benign(0.139)	tolerated(0.22)	neutral(0.054)	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
TMPRSS11B	132724	genome.wustl.edu	37	4	69107502	69107502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182502.3	-1	validated	p.R10I	0.000	244	0%	77	29.9%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
YTHDC1	91746	genome.wustl.edu	37	4	69203167	69203167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031732.2	-1	validated	p.R154I	1.000	252	0%	224	38.4%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
YTHDC1	91746	genome.wustl.edu	37	4	69203379	69203379	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031732.2	-1	validated	p.E124*	1.000	548	0%	263	33.1%	-	-	-	-	-	NULL
TMPRSS11E	28983	genome.wustl.edu	37	4	69344587	69344587	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014058.3	+1	validated	p.R330*	1.000	180	0%	93	28%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
UGT2B17	7367	genome.wustl.edu	37	4	69403615	69403615	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077.3	-1	reviewed	p.E441*	1.000	115	0%	63	65.1%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B10	7365	genome.wustl.edu	37	4	69682424	69682424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001075.4	+1	validated	p.K229N	0.032	250	0%	106	34%	-	-	benign(0.005)	tolerated(0.15)	neutral(0.241)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69693266	69693266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001075.4	+1	validated	p.S436L	0.930	524	0%	276	34.1%	-	-	benign(0.006)	tolerated(0.12)	neutral(0.261)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69696586	69696586	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001075.4	+1	validated	p.K526Q	0.022	976	0%	474	36.1%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_UDPGT
UGT2A3	79799	genome.wustl.edu	37	4	69795756	69795756	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024743.3	-1	validated	p.K453	0.996	338	0%	185	36.8%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A3	79799	genome.wustl.edu	37	4	69796909	69796909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024743.3	-1	validated	p.R350W	0.091	718	0%	276	35.5%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B11	10720	genome.wustl.edu	37	4	70074086	70074086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001073.1	-1	provisional	p.A329T	1.000	743	0.1%	378	31.2%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B28	54490	genome.wustl.edu	37	4	70160257	70160257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053039.1	+1	provisional	p.E440D	1.000	266	0%	114	26.3%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B28	54490	genome.wustl.edu	37	4	70280855	70280855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381079	+1	known	p.S308Y	0.863	964	0%	377	35%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B28	54490	genome.wustl.edu	37	4	70288614	70288614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381079	+1	known	p.E440D	0.998	329	0%	145	35.9%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B4	7363	genome.wustl.edu	37	4	70350946	70350946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021139.2	-1	validated	p.K430N	0.211	539	0%	220	26.4%	-	-	benign(0.012)	tolerated(0.09)	neutral(0.297)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B4	7363	genome.wustl.edu	37	4	70351042	70351042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021139.2	-1	validated	p.D398E	0.997	500	0%	221	34.8%	-	-	benign(0.011)	tolerated(0.12)	neutral(0.261)	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A2	574537	genome.wustl.edu	37	4	70505277	70505277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105677.1	-1	inferred	p.L20I	0.000	218	0%	119	39.5%	-	-	benign(0.02)	tolerated(0.4)	neutral(0.017)	NULL
SULT1B1	27284	genome.wustl.edu	37	4	70599873	70599873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014465.3	-1	reviewed	p.K162T	0.994	78	0%	33	45.5%	-	-	benign(0.003)	tolerated(0.25)	neutral(0.037)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
FDCSP	260436	genome.wustl.edu	37	4	71099748	71099748	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152997.2	+1	validated	p.S34	0.001	322	0.3%	198	32.8%	-	-	-	-	-	NULL
ENAM	10117	genome.wustl.edu	37	4	71508603	71508603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031889.2	+1	reviewed	p.S487Y	0.955	88	0%	40	45%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENAM	10117	genome.wustl.edu	37	4	71508799	71508799	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031889.2	+1	reviewed	p.I552	0.051	125	0%	52	30.8%	-	-	-	-	-	NULL
GRSF1	2926	genome.wustl.edu	37	4	71691907	71691907	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514161	-1	known	p.R334H	0.000	222	0%	178	31.5%	-	-	-	-	-	superfamily_RNA-binding domain RBD
DCK	1633	genome.wustl.edu	37	4	71892391	71892391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504730	+1	known	p.R187*	1.000	132	0%	74	33.8%	-	-	-	-	-	HMMPfam_dNK,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC4A4	8671	genome.wustl.edu	37	4	72338468	72338468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134742.1	+1	reviewed	p.A562T	1.000	385	0.3%	246	32.9%	-	-	benign(0.01)	tolerated(0.1)	neutral(0.287)	HMMPfam_HCO3_cotransp
GC	2638	genome.wustl.edu	37	4	72623884	72623884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000583.2	-1	reviewed	p.L236I	0.686	272	0%	129	38%	-	-	benign(0.037)	tolerated(0.27)	neutral(0.036)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ALB	213	genome.wustl.edu	37	4	74280861	74280861	+	Missense_Mutation	SNP	C	C	T	rs141343001		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000477.5	+1	reviewed	p.P390S	0.987	349	0%	221	33.9%	-	-	benign(0.119)	deleterious(0.03)	neutral(0.374)	PatternScan_ALBUMIN,superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
AFP	174	genome.wustl.edu	37	4	74306360	74306360	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134.1	+1	reviewed	p.I104M	0.022	161	0%	85	25.9%	-	-	benign(0.156)	deleterious(0.04)	neutral(0.363)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
AFP	174	genome.wustl.edu	37	4	74308068	74308068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134.1	+1	reviewed	p.L180I	0.002	207	0%	134	32.8%	-	-	benign(0.143)	tolerated(0.35)	neutral(0.033)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
ENSG00000245879	0	genome.wustl.edu	37	4	74964648	74964648	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500608	+1	known	NULL	0.002	97	0%	78	38.5%	-	-	-	-	-	-
MTHFD2L	441024	genome.wustl.edu	37	4	75147190	75147190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144978.1	+1	provisional	p.V285A	0.996	333	0%	229	14.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-binding Rossmann-fold domains
G3BP2	9908	genome.wustl.edu	37	4	76570874	76570874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012297.4	-1	validated	p.R397*	1.000	721	0%	404	30.4%	-	-	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PPEF2	5470	genome.wustl.edu	37	4	76797712	76797712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006239.2	-1	reviewed	p.E350K	0.000	268	0%	158	65.8%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
PPEF2	5470	genome.wustl.edu	37	4	76805826	76805826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006239.2	-1	reviewed	p.L223I	1.000	209	0%	133	30.8%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
FAM47E	100129583	genome.wustl.edu	37	4	77177656	77177656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136570.1	+1	validated	p.E134*	0.781	72	0%	63	28.6%	-	-	-	-	-	NULL
STBD1	8987	genome.wustl.edu	37	4	77230677	77230677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003943.3	+1	validated	p.E201K	0.798	249	0%	129	27.1%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CCDC158	339965	genome.wustl.edu	37	4	77276510	77276510	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042784.1	-1	validated	p.Q751	1.000	579	0%	296	32.4%	-	-	-	-	-	NULL
CCDC158	339965	genome.wustl.edu	37	4	77324299	77324299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042784.1	-1	validated	p.S21Y	1.000	560	0%	299	11.7%	-	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77661690	77661690	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020859.3	+1	validated	p.F788	0.073	72	0%	35	45.7%	-	-	-	-	-	NULL
SEPT11	55752	genome.wustl.edu	37	4	77926927	77926927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018243.2	+1	validated	p.D106Y	1.000	303	0%	127	27.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Septin,superfamily_SSF52540
MRPL1	65008	genome.wustl.edu	37	4	78806464	78806464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020236.3	+1	reviewed	p.E153K	0.986	590	0%	258	41.1%	-	-	benign(0.188)	deleterious(0.04)	neutral(0.366)	HMMPfam_Ribosomal_L1,superfamily_Ribosomal protein L1
MRPL1	65008	genome.wustl.edu	37	4	78871007	78871007	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504901	+1	known	p.F72C	0.997	483	0%	196	37.8%	-	-	-	-	-	superfamily_Ribosomal protein L1
FRAS1	80144	genome.wustl.edu	37	4	79158665	79158665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.D37G	1.000	159	0%	103	35.9%	-	-	benign(0.311)	tolerated(0.08)	neutral(0.397)	HMMSmart_SM00214,HMMSmart_SM00215
FRAS1	80144	genome.wustl.edu	37	4	79188414	79188414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.R270H	0.128	312	0%	187	36.9%	-	-	benign(0.005)	tolerated(0.22)	neutral(0.042)	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00215
FRAS1	80144	genome.wustl.edu	37	4	79199824	79199824	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508900	+1	known	p.S175*	1.000	784	0%	408	33.3%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
FRAS1	80144	genome.wustl.edu	37	4	79432595	79432595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.F3315L	1.000	150	0%	112	39.3%	-	-	benign(0.087)	tolerated(0.42)	neutral(0.021)	NULL
GK2	2712	genome.wustl.edu	37	4	80328367	80328367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033214.2	-1	validated	p.R330C	1.000	280	0%	162	40.1%	-	-	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	HMMPfam_FGGY_C,superfamily_SSF53067
ANTXR2	118429	genome.wustl.edu	37	4	80977091	80977091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145794.1	-1	reviewed	p.K125Q	1.000	449	0%	223	35.4%	-	-	possibly_damaging(0.85)	tolerated(0.2)	neutral(0.376)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PRDM8	56978	genome.wustl.edu	37	4	81121368	81121368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099403.1	+1	validated	p.V45A	0.997	261	0%	164	31.1%	-	-	possibly_damaging(0.882)	tolerated(0.06)	deleterious(0.667)	NULL
PRDM8	56978	genome.wustl.edu	37	4	81123180	81123180	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099403.1	+1	validated	p.S188	0.932	73	0%	43	46.5%	-	-	-	-	-	NULL
PRKG2	5593	genome.wustl.edu	37	4	82095960	82095960	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006259.1	-1	provisional	p.I205	0.980	402	0.2%	194	25.8%	-	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_CNMP_BINDING_1,superfamily_cNMP_binding
THAP9	79725	genome.wustl.edu	37	4	83827662	83827662	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024672.4	+1	validated	p.I154	0.002	179	0%	67	31.3%	-	-	-	-	-	NULL
FAM175A	84142	genome.wustl.edu	37	4	84383626	84383626	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139076.2	-1	validated	p.F409C	1.000	301	0%	153	34%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NKX6-1	4825	genome.wustl.edu	37	4	85416992	85416992	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006168.2	-1	validated	p.G226*	1.000	248	0%	141	44%	-	-	-	-	-	superfamily_Homeodomain-like
MAPK10	5602	genome.wustl.edu	37	4	86985430	86985430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138982.2	-1	reviewed	p.E367K	1.000	301	0.3%	154	39.6%	-	-	benign(0.246)	deleterious(0.02)	neutral(0.408)	superfamily_Protein kinase-like (PK-like)
PTPN13	5783	genome.wustl.edu	37	4	87622790	87622790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.Y344C	1.000	99	1%	58	34.5%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87720314	87720314	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.D2159	0.723	361	0%	125	32.8%	-	-	-	-	-	NULL
PTPN13	5783	genome.wustl.edu	37	4	87731055	87731055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.T2411M	0.999	365	0%	218	39.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
AFF1	4299	genome.wustl.edu	37	4	87967978	87967978	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005935.2	+1	validated	p.P90	0.000	133	0%	86	33.7%	-	-	-	-	-	HMMPfam_AF-4
KLHL8	57563	genome.wustl.edu	37	4	88091362	88091362	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020803.3	-1	validated	p.D469A	1.000	134	0%	73	23.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL8	57563	genome.wustl.edu	37	4	88106635	88106635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020803.3	-1	validated	p.S178I	1.000	129	0%	92	33.7%	-	-	possibly_damaging(0.697)	tolerated(0.09)	deleterious(0.546)	HMMPfam_BACK
DSPP	1834	genome.wustl.edu	37	4	88536993	88536993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014208.3	+1	reviewed	p.S1060N	0.185	535	0%	556	28.8%	-	-	unknown(0)	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88537007	88537007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014208.3	+1	reviewed	p.D1065N	0.633	583	0.5%	552	30.1%	-	-	unknown(0)	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88537434	88537434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014208.3	+1	reviewed	p.S1207I	0.837	481	0%	387	34.6%	-	-	unknown(0)	-	-	NULL
DMP1	1758	genome.wustl.edu	37	4	88583999	88583999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004407.3	+1	reviewed	p.E357K	0.996	220	0%	107	16.8%	-	-	benign(0.079)	deleterious(0)	neutral(0.450)	HMMPfam_DMP1
IBSP	3381	genome.wustl.edu	37	4	88723833	88723833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004967.3	+1	reviewed	p.L45I	0.931	188	0%	84	39.3%	-	-	benign(0.192)	tolerated(0.06)	neutral(0.341)	HMMPfam_BSP_II
MEPE	56955	genome.wustl.edu	37	4	88766338	88766338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020203.3	+1	validated	p.E106D	0.000	121	0%	55	10.9%	-	-	benign(0.03)	tolerated(0.3)	neutral(0.030)	HMMPfam_Osteoregulin
PKD2	5311	genome.wustl.edu	37	4	88989099	88989099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000297.2	+1	reviewed	p.R803Q	1.000	380	0.3%	238	39.1%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ABCG2	9429	genome.wustl.edu	37	4	89061014	89061014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004827.2	-1	reviewed	p.R45Q	0.943	235	0%	129	31.8%	-	-	benign(0.389)	tolerated(0.22)	neutral(0.167)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HERC6	55008	genome.wustl.edu	37	4	89311819	89311819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017912.3	+1	validated	p.S151L	1.000	90	0%	66	34.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC6	55008	genome.wustl.edu	37	4	89318105	89318105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017912.3	+1	validated	p.E330D	0.003	349	0%	142	33.1%	-	-	benign(0.002)	tolerated(0.31)	neutral(0.027)	superfamily_RCC1/BLIP-II
HERC3	8916	genome.wustl.edu	37	4	89597576	89597576	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014606.1	+1	provisional	e16+2	0.998	170	0%	99	39.4%	-	-	-	-	-	-
FAM13A	10144	genome.wustl.edu	37	4	89689167	89689167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014883.2	-1	validated	p.G501E	0.000	315	0%	162	38.3%	-	-	benign(0.004)	tolerated(0.29)	neutral(0.029)	NULL
SNCA	6622	genome.wustl.edu	37	4	90743413	90743413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000345.3	-1	reviewed	p.K97M	1.000	530	0%	301	28.2%	-	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMPfam_Synuclein
MMRN1	22915	genome.wustl.edu	37	4	90857867	90857867	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007351.2	+1	reviewed	p.N1012	0.000	82	0%	29	17.2%	-	-	-	-	-	NULL
FAM190A	401145	genome.wustl.edu	37	4	91234139	91234139	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145065.1	+1	validated	p.E484*	0.998	195	0%	73	30.1%	-	-	-	-	-	NULL
FAM190A	401145	genome.wustl.edu	37	4	91321209	91321209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145065.1	+1	validated	p.S511F	1.000	1081	0%	484	36.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM190A	401145	genome.wustl.edu	37	4	91549304	91549304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145065.1	+1	validated	p.S618Y	1.000	173	0%	110	35.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TMSB4XP8	7117	genome.wustl.edu	37	4	91760150	91760150	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183049.2	-1	validated	p.F13	1.000	103	0%	67	28.4%	-	-	-	-	-	HMMPfam_Thymosin,HMMSmart_THY
GRID2	2895	genome.wustl.edu	37	4	94436426	94436426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001510.2	+1	validated	p.A686V	1.000	148	0%	90	33.3%	-	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
ATOH1	474	genome.wustl.edu	37	4	94751095	94751095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005172.1	+1	reviewed	p.E340K	1.000	33	0%	17	41.2%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
SMARCAD1	56916	genome.wustl.edu	37	4	95174078	95174078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128429.1	+1	validated	p.L401F	1.000	125	0%	106	35.8%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCAD1	56916	genome.wustl.edu	37	4	95199807	95199807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128429.1	+1	validated	p.L740S	0.490	288	0%	109	44%	-	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_SNF2_N
PDHA2	5161	genome.wustl.edu	37	4	96761557	96761557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005390.4	+1	validated	p.R86C	0.964	147	0%	83	28.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1_dh,superfamily_SSF52518
PDHA2	5161	genome.wustl.edu	37	4	96762177	96762177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005390.4	+1	validated	p.M292I	1.000	394	0%	219	33.8%	-	-	possibly_damaging(0.828)	deleterious(0.01)	deleterious(0.720)	HMMPfam_E1_dh,superfamily_SSF52518
C4orf37	285555	genome.wustl.edu	37	4	98633860	98633860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174952.2	-1	validated	p.A437E	0.683	300	0%	111	35.1%	-	-	possibly_damaging(0.803)	tolerated(0.08)	deleterious(0.603)	NULL
C4orf37	285555	genome.wustl.edu	37	4	99055575	99055575	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174952.2	-1	validated	p.E49*	0.741	157	0%	55	45.5%	-	-	-	-	-	NULL
METAP1	23173	genome.wustl.edu	37	4	99969981	99969981	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015143.2	+1	validated	p.G295	1.000	395	0%	210	36.7%	-	-	-	-	-	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase,PatternScan_MAP_1
ADH1A	124	genome.wustl.edu	37	4	100205586	100205586	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000667.2	-1	reviewed	p.T179	0.989	237	0%	172	16.3%	-	-	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
ADH1A	124	genome.wustl.edu	37	4	100208729	100208729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000667.2	-1	reviewed	p.R38C	1.000	186	0%	73	32.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GroES-like,HMMPfam_ADH_N
ADH1B	125	genome.wustl.edu	37	4	100232009	100232009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000668.4	-1	reviewed	p.K339T	1.000	485	0%	249	32.9%	-	-	probably_damaging(0.985)	deleterious(0.05)	deleterious(0.777)	superfamily_GroES-like
C4orf17	84103	genome.wustl.edu	37	4	100434274	100434274	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032149.2	+1	validated	p.I12	0.000	144	0%	90	30%	-	-	-	-	-	NULL
MTTP	4547	genome.wustl.edu	37	4	100543898	100543898	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000253.2	+1	reviewed	p.E860*	0.744	229	0%	136	30.9%	-	-	-	-	-	NULL
DAPP1	27071	genome.wustl.edu	37	4	100761484	100761484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014395.2	+1	validated	p.T88I	0.836	256	0%	91	35.2%	-	-	benign(0.326)	tolerated(0.11)	neutral(0.373)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
DAPP1	27071	genome.wustl.edu	37	4	100782739	100782739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014395.2	+1	validated	p.G165D	1.000	177	0%	107	10.3%	-	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,superfamily_SH2 domain
DNAJB14	79982	genome.wustl.edu	37	4	100824913	100824913	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031723.2	-1	validated	p.R329*	1.000	512	0.2%	300	25.7%	-	-	-	-	-	HMMPfam_DUF1977
EMCN	51705	genome.wustl.edu	37	4	101337074	101337074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016242.3	-1	validated	p.K244N	1.000	106	0%	57	21.1%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Endomucin
EMCN	51705	genome.wustl.edu	37	4	101342478	101342478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016242.3	-1	validated	p.L209M	0.983	343	0%	128	33.6%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Endomucin
PPP3CA	5530	genome.wustl.edu	37	4	101947132	101947132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000944.4	-1	validated	p.R486C	1.000	424	0%	253	13.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Metallo-dependent phosphatases
BANK1	55024	genome.wustl.edu	37	4	102751182	102751182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017935.4	+1	reviewed	p.K96N	0.993	186	0%	106	34.9%	-	-	benign(0.042)	tolerated(0.46)	neutral(0.015)	NULL
NFKB1	4790	genome.wustl.edu	37	4	103533676	103533676	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003998.3	+1	reviewed	p.T835	0.137	222	0.5%	95	30.5%	-	-	-	-	-	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
SLC9B1	150159	genome.wustl.edu	37	4	103866375	103866375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139173.2	-1	reviewed	p.P210S	0.998	228	0%	108	20.4%	-	-	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_Na_H_Exchanger
SLC9B2	133308	genome.wustl.edu	37	4	103987604	103987604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178833.4	-1	validated	p.L51I	0.118	552	0%	278	36.7%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SLC9B2	133308	genome.wustl.edu	37	4	103988733	103988733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508136	-1	known	p.P108H	0.000	339	0%	215	34.4%	-	-	unknown(0)	deleterious(0.01)	-	NULL
CENPE	1062	genome.wustl.edu	37	4	104053975	104053975	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.E2267*	1.000	395	0.3%	141	11.3%	-	-	-	-	-	NULL
CENPE	1062	genome.wustl.edu	37	4	104057510	104057510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.L2104V	1.000	232	0%	104	38.5%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
CENPE	1062	genome.wustl.edu	37	4	104061538	104061538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.R1930C	0.986	351	0%	167	31.1%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
CENPE	1062	genome.wustl.edu	37	4	104068580	104068580	+	Missense_Mutation	SNP	G	G	A	rs186947885	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.T1356M	0.000	411	0%	212	34.4%	-	-	benign(0.367)	tolerated(0.12)	neutral(0.377)	NULL
CENPE	1062	genome.wustl.edu	37	4	104068713	104068713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.T1312A	0.000	879	0%	434	36.4%	-	-	benign(0.05)	tolerated(0.78)	neutral(0.004)	NULL
CENPE	1062	genome.wustl.edu	37	4	104079785	104079785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.D954N	0.928	529	0%	257	28.4%	-	-	probably_damaging(0.978)	tolerated(0.18)	deleterious(0.476)	NULL
CENPE	1062	genome.wustl.edu	37	4	104115811	104115811	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.E170*	1.000	374	0%	175	32%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
TACR3	6870	genome.wustl.edu	37	4	104511147	104511147	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001059.1	-1	reviewed	p.R364*	0.988	186	0%	108	35.2%	-	-	-	-	-	superfamily_SSF81321
TACR3	6870	genome.wustl.edu	37	4	104579481	104579481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001059.1	-1	reviewed	p.L210I	0.968	357	0%	146	19.2%	-	-	benign(0.38)	tolerated(0.06)	neutral(0.444)	HMMPfam_7tm_1,superfamily_SSF81321
TET2	54790	genome.wustl.edu	37	4	106157490	106157490	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127208.1	+1	validated	p.F797	1.000	175	0%	77	23.4%	-	-	-	-	-	NULL
PPA2	27068	genome.wustl.edu	37	4	106359121	106359121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176869.2	-1	reviewed	p.E172K	1.000	314	0%	151	45%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pyrophosphatase,superfamily_Inorganic pyrophosphatase
GSTCD	79807	genome.wustl.edu	37	4	106746865	106746865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031720.2	+1	validated	p.R480C	1.000	364	0%	154	35.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
AIMP1	9255	genome.wustl.edu	37	4	107252980	107252980	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142416.1	+1	reviewed	p.V205	0.269	234	0%	120	30.8%	-	-	-	-	-	HMMPfam_tRNA_bind,superfamily_Nucleic acid-binding proteins
PAPSS1	9061	genome.wustl.edu	37	4	108608204	108608204	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005443.4	-1	validated	p.E181*	1.000	239	0%	120	35.8%	-	-	-	-	-	HMMPfam_APS_kinase,superfamily_P-loop containing nucleoside triphosphate hydrolases
LEF1	51176	genome.wustl.edu	37	4	109088813	109088813	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016269.4	-1	reviewed	p.I37	1.000	125	0%	109	11%	-	-	-	-	-	HMMPfam_CTNNB1_binding
OSTC	58505	genome.wustl.edu	37	4	109576814	109576814	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021227.2	+1	validated	e2+1	1.000	273	0%	150	37.3%	-	-	-	-	-	-
SEC24B	10427	genome.wustl.edu	37	4	110433153	110433153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006323.2	+1	reviewed	p.R606Q	1.000	465	0.2%	244	18.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-Sec23_Sec24,superfamily_Zn-finger domain of Sec23/24,superfamily_beta-sandwich domain of Sec23/24
CASP6	839	genome.wustl.edu	37	4	110610532	110610532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001226.3	-1	reviewed	p.A279V	1.000	171	0%	100	31%	-	-	benign(0.002)	tolerated(1)	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP6	839	genome.wustl.edu	37	4	110612100	110612100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001226.3	-1	reviewed	p.E183D	0.000	294	0%	201	37.3%	-	-	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
GAR1	54433	genome.wustl.edu	37	4	110740321	110740321	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503671	+1	known	p.*178	0.001	92	0%	80	38.8%	-	-	-	-	-	NULL
EGF	1950	genome.wustl.edu	37	4	110909800	110909800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001963.4	+1	reviewed	p.N890S	1.000	374	0%	257	13.2%	-	-	possibly_damaging(0.719)	deleterious(0.01)	deleterious(0.666)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
ELOVL6	79071	genome.wustl.edu	37	4	111026739	111026739	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130721.1	-1	validated	p.F45	1.000	131	0%	83	48.2%	-	-	-	-	-	HMMPfam_ELO
ENPEP	2028	genome.wustl.edu	37	4	111398042	111398042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001977.3	+1	validated	p.R158W	0.000	70	1.4%	27	25.9%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
ENPEP	2028	genome.wustl.edu	37	4	111470885	111470885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001977.3	+1	validated	p.L782I	1.000	362	0%	196	37.2%	-	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	NULL
PITX2	5308	genome.wustl.edu	37	4	111539758	111539758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394595	-1	known	p.V91I	1.000	103	0%	84	33.3%	-	-	unknown(0)	-	-	NULL
PITX2	5308	genome.wustl.edu	37	4	111539787	111539787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000325.5	-1	reviewed	p.E157K	1.000	131	0%	69	33.3%	-	-	benign(0.372)	deleterious(0.02)	deleterious(0.502)	NULL
ALPK1	80216	genome.wustl.edu	37	4	113352943	113352943	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102406.1	+1	validated	p.I747S	0.001	82	0%	31	54.8%	-	-	benign(0.06)	deleterious(0)	neutral(0.449)	NULL
ALPK1	80216	genome.wustl.edu	37	4	113353561	113353561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102406.1	+1	validated	p.S953F	0.992	186	0%	86	33.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ALPK1	80216	genome.wustl.edu	37	4	113359797	113359797	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102406.1	+1	validated	p.L1116	0.093	369	0%	164	28.7%	-	-	-	-	-	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
C4orf21	55345	genome.wustl.edu	37	4	113469533	113469533	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505019	-1	known	p.R1784*	0.019	265	0%	108	48.1%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
C4orf21	55345	genome.wustl.edu	37	4	113505280	113505280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505019	-1	known	p.F1384L	1.000	312	0%	147	36.7%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_zf-GRF
C4orf21	55345	genome.wustl.edu	37	4	113508506	113508506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505019	-1	known	p.S1236Y	0.000	144	0%	102	10.8%	-	-	benign(0.139)	deleterious(0.04)	neutral(0.361)	NULL
ANK2	287	genome.wustl.edu	37	4	114257039	114257039	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.I1139	0.985	159	0%	98	44.9%	-	-	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114262908	114262908	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.E1320*	1.000	281	0%	143	36.4%	-	-	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114275124	114275124	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.R1784*	0.997	144	0%	62	37.1%	-	-	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114277338	114277338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.L2522I	0.096	102	0%	55	30.9%	-	-	benign(0.356)	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114277738	114277738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.S2655L	0.933	351	0%	159	35.8%	-	-	benign(0.167)	-	-	NULL
CAMK2D	817	genome.wustl.edu	37	4	114381391	114381391	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513132	-1	known	p.L76M	1.000	189	0%	61	39.3%	-	-	-	-	-	HMMPfam_CaMKII_AD,superfamily_NTF2-like
UGT8	7368	genome.wustl.edu	37	4	115544340	115544340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128174.1	+1	validated	p.E102K	1.000	376	0%	207	33.8%	-	-	possibly_damaging(0.791)	tolerated(0.26)	neutral(0.331)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
TRAM1L1	133022	genome.wustl.edu	37	4	118005796	118005796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152402.2	-1	validated	p.L252M	0.985	198	0%	136	11.8%	-	-	possibly_damaging(0.939)	tolerated(0.24)	neutral(0.422)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
NDST3	9348	genome.wustl.edu	37	4	119158200	119158200	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004784.2	+1	reviewed	e9-1	1.000	357	0%	192	35.4%	-	-	-	-	-	-
SYNPO2	171024	genome.wustl.edu	37	4	119947992	119947992	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504178	+1	known	p.E108*	0.001	83	0%	49	36.7%	-	-	benign(0.006)	tolerated(0.69)	neutral(0.002)	NULL
MYOZ2	51778	genome.wustl.edu	37	4	120072138	120072138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016599.3	+1	validated	p.R63I	1.000	251	0%	121	42.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Calsarcin
MYOZ2	51778	genome.wustl.edu	37	4	120085534	120085534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016599.3	+1	validated	p.Y182C	1.000	187	0%	93	33.3%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Calsarcin
USP53	54532	genome.wustl.edu	37	4	120188515	120188515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019050.2	+1	validated	p.R338Q	0.961	232	0%	163	14.7%	-	-	possibly_damaging(0.747)	deleterious(0.02)	deleterious(0.657)	HMMPfam_UCH,superfamily_SSF54001
USP53	54532	genome.wustl.edu	37	4	120213569	120213569	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019050.2	+1	validated	p.E809*	0.972	278	0%	81	38.3%	-	-	-	-	-	NULL
MAD2L1	4085	genome.wustl.edu	37	4	120981409	120981409	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002358.3	-1	reviewed	p.L161W	1.000	390	0%	182	41.8%	-	-	probably_damaging(0.992)	tolerated(0.19)	deleterious(0.497)	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
TNIP3	79931	genome.wustl.edu	37	4	122071316	122071316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128843.1	-1	validated	p.S184Y	0.000	285	0%	132	46.2%	-	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
TNIP3	79931	genome.wustl.edu	37	4	122082334	122082334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128843.1	-1	validated	p.S35Y	0.953	427	0%	224	37.5%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ANXA5	308	genome.wustl.edu	37	4	122590879	122590879	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001154.3	-1	reviewed	p.G261*	1.000	191	0%	57	19.3%	-	-	-	-	-	superfamily_Annexin,HMMPfam_Annexin
EXOSC9	5393	genome.wustl.edu	37	4	122732753	122732753	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034194.1	+1	validated	p.K252*	1.000	224	0%	85	47.1%	-	-	-	-	-	HMMPfam_RNase_PH_C,superfamily_3_ExoRNase
CCNA2	890	genome.wustl.edu	37	4	122739986	122739986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001237.3	-1	validated	p.L362S	1.000	271	0%	110	35.5%	-	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
CCNA2	890	genome.wustl.edu	37	4	122743632	122743632	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001237.3	-1	validated	p.F128C	0.739	356	0%	211	37.4%	-	-	benign(0.079)	deleterious(0.02)	neutral(0.389)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122801030	122801030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130698.1	-1	validated	p.E876G	1.000	226	0%	126	31.7%	-	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122846304	122846304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130698.1	-1	validated	p.L349I	1.000	228	0%	194	17%	-	-	benign(0.199)	tolerated(0.29)	neutral(0.048)	NULL
ADAD1	132612	genome.wustl.edu	37	4	123329171	123329171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139243.3	+1	validated	p.R278I	1.000	162	0%	93	10.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_A_deamin,HMMSmart_SM00552
BBS12	166379	genome.wustl.edu	37	4	123663765	123663765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152618.2	+1	reviewed	p.T240A	0.001	160	0%	90	40%	-	-	possibly_damaging(0.921)	tolerated(0.07)	deleterious(0.690)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
FAT4	79633	genome.wustl.edu	37	4	126239586	126239586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.R674C	0.001	216	0%	163	31.3%	-	-	possibly_damaging(0.938)	tolerated(0.06)	deleterious(0.706)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126240192	126240192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.D876Y	1.000	126	0%	80	47.5%	-	-	possibly_damaging(0.628)	deleterious(0.02)	deleterious(0.602)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126329652	126329652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.E1875K	1.000	303	0%	127	29.9%	-	-	probably_damaging(0.994)	tolerated(0.54)	neutral(0.460)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126336216	126336216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.S2033I	1.000	348	0%	179	31.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126373056	126373056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.P3629S	1.000	122	0%	76	22.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126411631	126411631	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.E4552*	1.000	230	0%	87	35.6%	-	-	-	-	-	NULL
INTU	27152	genome.wustl.edu	37	4	128605577	128605577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015693.3	+1	validated	p.R399C	1.000	495	0%	240	32.1%	-	-	benign(0.314)	tolerated(0.05)	neutral(0.444)	NULL
HSPA4L	22824	genome.wustl.edu	37	4	128724901	128724901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014278.2	+1	provisional	p.R261W	1.000	317	0.3%	153	39.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF53067
HSPA4L	22824	genome.wustl.edu	37	4	128748465	128748465	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014278.2	+1	provisional	p.Y684	0.996	207	0%	71	43.7%	-	-	-	-	-	HMMPfam_HSP70,superfamily_SSF100934
PLK4	10733	genome.wustl.edu	37	4	128814679	128814679	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014264.3	+1	reviewed	p.I778M	1.000	267	0%	150	39.3%	-	-	benign(0.035)	tolerated(0.15)	neutral(0.243)	superfamily_Kinase_like
PCDH10	57575	genome.wustl.edu	37	4	134073118	134073118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032961.1	+1	reviewed	p.A608V	1.000	6	0.000	7	0.571	-	-	possibly_damaging(0.775)	deleterious(0.02)	deleterious(0.671)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH10	57575	genome.wustl.edu	37	4	134111301	134111301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032961.1	+1	reviewed	p.K1037E	1.000	241	0%	95	33.7%	-	-	benign(0.246)	deleterious(0)	deleterious(0.470)	NULL
PABPC4L	132430	genome.wustl.edu	37	4	135121241	135121241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114734.1	-1	validated	p.E312K	0.999	358	0%	195	30.8%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PCDH18	54510	genome.wustl.edu	37	4	138451869	138451869	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019035.3	-1	reviewed	p.I458	0.999	215	0%	103	25.2%	-	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1
PCDH18	54510	genome.wustl.edu	37	4	138452143	138452143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019035.3	-1	reviewed	p.S367Y	1.000	136	0%	52	38.5%	-	-	possibly_damaging(0.843)	deleterious(0)	deleterious(0.768)	superfamily_Cadherin-like
SLC7A11	23657	genome.wustl.edu	37	4	139101830	139101830	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014331.3	-1	validated	p.R411*	1.000	192	0%	85	28.2%	-	-	-	-	-	NULL
C4orf49	84709	genome.wustl.edu	37	4	140187819	140187819	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032623.3	-1	validated	p.S219	0.048	231	0%	163	30.1%	-	-	-	-	-	NULL
NAA15	80155	genome.wustl.edu	37	4	140272700	140272700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057175.3	+1	validated	p.N317H	1.000	142	0%	62	22.6%	-	-	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	superfamily_TPR-like
CLGN	1047	genome.wustl.edu	37	4	141311867	141311867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130675.1	-1	reviewed	p.P556H	0.996	557	0%	228	30.7%	-	-	possibly_damaging(0.476)	deleterious(0.03)	deleterious(0.521)	NULL
UCP1	7350	genome.wustl.edu	37	4	141484496	141484496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021833.4	-1	reviewed	p.E168K	1.000	366	0%	195	34.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
ZNF330	27309	genome.wustl.edu	37	4	142155081	142155081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014487.4	+1	validated	p.N301H	0.501	348	0.3%	165	36.4%	-	-	benign(0.002)	tolerated(0.27)	neutral(0.034)	HMMPfam_NOA36
IL15	3600	genome.wustl.edu	37	4	142653973	142653973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000585.3	+1	reviewed	p.I154S	0.862	203	0%	83	32.5%	-	-	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	HMMPfam_IL15
INPP4B	8821	genome.wustl.edu	37	4	143029298	143029298	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101669.1	-1	reviewed	p.F774	1.000	418	0%	145	34.5%	-	-	-	-	-	NULL
INPP4B	8821	genome.wustl.edu	37	4	143045814	143045814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101669.1	-1	reviewed	p.L607P	0.996	111	0%	76	27.6%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
USP38	84640	genome.wustl.edu	37	4	144119007	144119007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032557.5	+1	validated	p.R327K	1.000	691	0%	296	27%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
USP38	84640	genome.wustl.edu	37	4	144134979	144134979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032557.5	+1	validated	p.S617L	1.000	150	0%	94	38.3%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP38	84640	genome.wustl.edu	37	4	144135876	144135876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032557.5	+1	validated	p.F916C	1.000	136	0%	94	34%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
SMARCA5	8467	genome.wustl.edu	37	4	144449168	144449168	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003601.2	+1	reviewed	p.K317Q	1.000	151	0%	59	44.1%	-	-	possibly_damaging(0.734)	tolerated(0.25)	neutral(0.305)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
FREM3	166752	genome.wustl.edu	37	4	144619654	144619654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329798	-1	known	p.K725N	1.000	499	0%	235	34%	-	-	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	NULL
FREM3	166752	genome.wustl.edu	37	4	144620823	144620823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329798	-1	known	p.E336K	0.999	29	0%	26	26.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HHIP	64399	genome.wustl.edu	37	4	145573921	145573921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022475.1	+1	reviewed	p.F148L	1.000	201	0%	115	33%	-	-	possibly_damaging(0.946)	tolerated(0.1)	deleterious(0.676)	HMMPfam_Folate_rec
ABCE1	6059	genome.wustl.edu	37	4	146044182	146044182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040876.1	+1	reviewed	p.R425C	1.000	56	0%	20	30%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCE1	6059	genome.wustl.edu	37	4	146048713	146048713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040876.1	+1	reviewed	p.F596L	1.000	403	0%	268	38.1%	-	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
SLC10A7	84068	genome.wustl.edu	37	4	147215201	147215201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029998.3	-1	validated	p.P201H	1.000	269	0%	161	37.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SBF
POU4F2	5458	genome.wustl.edu	37	4	147561618	147561618	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004575.2	+1	validated	p.Q296	1.000	74	0%	78	32.1%	-	-	-	-	-	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_2,superfamily_lambda repressor-like DNA-binding domains
TTC29	83894	genome.wustl.edu	37	4	147824741	147824741	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031956.2	-1	validated	p.E181*	0.993	368	0%	200	38%	-	-	-	-	-	superfamily_TPR-like
ARHGAP10	79658	genome.wustl.edu	37	4	148653564	148653564	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024605.3	+1	validated	p.E38*	1.000	62	0%	32	56.2%	-	-	-	-	-	NULL
DCLK2	166614	genome.wustl.edu	37	4	151153557	151153557	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040260.2	+1	validated	p.V456	0.016	311	0%	165	38.2%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRBA	987	genome.wustl.edu	37	4	151223853	151223853	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509835	-1	known	p.S1300Y	1.000	347	0%	184	34.8%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
LRBA	987	genome.wustl.edu	37	4	151836824	151836824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.R317Q	1.000	329	0%	139	38.8%	-	-	probably_damaging(0.976)	tolerated(0.14)	deleterious(0.667)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat
SH3D19	152503	genome.wustl.edu	37	4	152065391	152065391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009555.3	-1	validated	p.P431L	0.941	409	0%	204	33.3%	-	-	possibly_damaging(0.706)	deleterious(0)	deleterious(0.699)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
SH3D19	152503	genome.wustl.edu	37	4	152096155	152096155	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009555.3	-1	validated	p.G121*	0.027	262	0%	145	40.7%	-	-	-	-	-	NULL
SH3D19	152503	genome.wustl.edu	37	4	152096383	152096383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009555.3	-1	validated	p.K45E	0.993	182	0%	120	34.2%	-	-	benign(0.063)	deleterious(0)	neutral(0.449)	NULL
FAM160A1	729830	genome.wustl.edu	37	4	152498626	152498626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109977.1	+1	predicted	p.D44N	1.000	174	0%	77	19.5%	-	-	probably_damaging(0.999)	tolerated(0.6)	deleterious(0.495)	NULL
FAM160A1	729830	genome.wustl.edu	37	4	152567855	152567855	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109977.1	+1	predicted	p.E458*	1.000	251	0%	172	11.6%	-	-	-	-	-	NULL
TIGD4	201798	genome.wustl.edu	37	4	153690644	153690644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145720.2	-1	reviewed	p.F505V	1.000	82	0%	44	36.4%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
KIAA0922	23240	genome.wustl.edu	37	4	154478149	154478149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015196.3	+1	validated	p.R155I	1.000	237	0%	108	33.3%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
TLR2	7097	genome.wustl.edu	37	4	154624531	154624531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003264.3	+1	reviewed	p.N158D	0.068	87	0%	57	24.6%	-	-	possibly_damaging(0.904)	deleterious(0.03)	deleterious(0.723)	superfamily_SSF52058
DCHS2	54798	genome.wustl.edu	37	4	155157193	155157193	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.E2416*	1.000	198	0%	89	37.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155180754	155180754	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.Q1789H	0.899	218	0%	161	26.7%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155219192	155219192	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.E1637*	1.000	160	0%	90	31.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155226325	155226325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.E1318D	0.970	102	0%	54	31.5%	-	-	benign(0.026)	tolerated(0.31)	neutral(0.028)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155237086	155237086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.L1237M	0.753	500	0%	280	35.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155412210	155412210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142552.1	-1	validated	p.G100S	0.988	9	0.000	11	0.636	-	-	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155412366	155412366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142552.1	-1	validated	p.L48I	0.997	21	0%	13	30.8%	-	-	possibly_damaging(0.653)	deleterious(0.04)	deleterious(0.579)	NULL
PLRG1	5356	genome.wustl.edu	37	4	155461949	155461949	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506627	-1	known	p.S47L	0.977	237	0%	121	35.5%	-	-	-	-	-	superfamily_WD40 repeat-like
FGA	2243	genome.wustl.edu	37	4	155505369	155505369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000508.3	-1	reviewed	p.E836D	1.000	157	0%	78	21.8%	-	-	possibly_damaging(0.566)	deleterious(0.04)	deleterious(0.542)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155505557	155505557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000508.3	-1	reviewed	p.G774W	0.992	271	0%	165	32.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155505640	155505640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000508.3	-1	reviewed	p.S746Y	0.997	232	0%	152	19.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155507685	155507685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000508.3	-1	reviewed	p.S299N	0.017	552	0%	293	36.2%	-	-	possibly_damaging(0.767)	deleterious(0.02)	deleterious(0.667)	HMMPfam_Fib_alpha
FGG	2266	genome.wustl.edu	37	4	155533704	155533704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021870.2	-1	reviewed	p.L20I	0.151	265	0%	90	35.6%	-	-	possibly_damaging(0.774)	deleterious(0.04)	deleterious(0.637)	NULL
MAP9	79884	genome.wustl.edu	37	4	156294317	156294317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039580.1	-1	validated	p.R151I	0.515	82	0%	77	10.4%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
MAP9	79884	genome.wustl.edu	37	4	156294517	156294517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039580.1	-1	validated	p.K84N	0.092	228	0%	100	37%	-	-	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	NULL
GUCY1A3	2982	genome.wustl.edu	37	4	156643292	156643292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000856.4	+1	validated	p.F607V	1.000	332	0%	153	32%	-	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1
GUCY1A3	2982	genome.wustl.edu	37	4	156651206	156651206	+	Silent	SNP	C	C	T	rs184271525	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000856.4	+1	validated	p.F632	1.000	212	0%	88	28.4%	-	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ASIC5	51802	genome.wustl.edu	37	4	156751127	156751127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017419.2	-1	reviewed	p.L467I	0.694	158	0%	99	31.3%	-	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_ASC
ASIC5	51802	genome.wustl.edu	37	4	156757949	156757949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017419.2	-1	reviewed	p.S376Y	0.799	260	0%	91	40.7%	-	-	benign(0.33)	deleterious(0)	deleterious(0.548)	HMMPfam_ASC
ASIC5	51802	genome.wustl.edu	37	4	156775387	156775387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017419.2	-1	reviewed	p.E143*	0.046	261	0%	119	40.3%	-	-	-	-	-	HMMPfam_ASC
CTSO	1519	genome.wustl.edu	37	4	156858608	156858608	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001334.2	-1	reviewed	p.E194*	1.000	217	0%	125	38.4%	-	-	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
CTSO	1519	genome.wustl.edu	37	4	156864327	156864327	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001334.2	-1	reviewed	p.L75	1.000	267	0%	70	32.9%	-	-	-	-	-	superfamily_SSF54001
PDGFC	56034	genome.wustl.edu	37	4	157891976	157891976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016205.1	-1	reviewed	p.S27I	0.997	314	0%	164	36.6%	-	-	unknown(0)	deleterious(0)	-	NULL
GRIA2	2891	genome.wustl.edu	37	4	158242642	158242642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	p.S258Y	1.000	493	0%	257	37%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA2	2891	genome.wustl.edu	37	4	158254051	158254051	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	p.I321	1.000	165	0%	77	42.9%	-	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA2	2891	genome.wustl.edu	37	4	158255242	158255242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	p.E412D	1.000	496	0%	282	33.3%	-	-	possibly_damaging(0.598)	tolerated(0.14)	neutral(0.457)	NULL
GRIA2	2891	genome.wustl.edu	37	4	158282222	158282222	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083619.1	+1	reviewed	p.K784N	1.000	520	0%	214	36.4%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIA2	2891	genome.wustl.edu	37	4	158284178	158284178	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510854	+1	known	p.R209*	1.000	296	0%	123	14.6%	-	-	-	-	-	NULL
RXFP1	59350	genome.wustl.edu	37	4	159526268	159526268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021634.2	+1	provisional	p.K147N	0.995	87	0%	43	44.2%	-	-	benign(0.004)	tolerated(0.41)	neutral(0.015)	HMMSmart_SM00369,superfamily_L domain-like
RXFP1	59350	genome.wustl.edu	37	4	159533502	159533502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021634.2	+1	provisional	p.S223Y	1.000	340	0%	171	11.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_L domain-like
RXFP1	59350	genome.wustl.edu	37	4	159566193	159566193	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021634.2	+1	provisional	p.S416	1.000	259	0%	128	35.2%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ETFDH	2110	genome.wustl.edu	37	4	159605819	159605819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004453.2	+1	reviewed	p.L161I	1.000	214	0%	92	29.3%	-	-	benign(0.007)	tolerated(0.46)	neutral(0.012)	superfamily_FAD/NAD(P)-binding domain
PPID	5481	genome.wustl.edu	37	4	159642497	159642497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005038.2	-1	reviewed	p.R75Q	1.000	274	0%	152	32.9%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like
FNIP2	57600	genome.wustl.edu	37	4	159772560	159772560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020840.1	+1	validated	p.R272Q	1.000	254	0%	134	35.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160252867	160252867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014247.2	+1	validated	p.R393Q	1.000	158	0%	77	27.3%	-	-	possibly_damaging(0.938)	deleterious(0.04)	deleterious(0.732)	superfamily_PDZ,superfamily_Ras_GEF
FSTL5	56884	genome.wustl.edu	37	4	162402192	162402192	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020116.3	-1	validated	p.Q530*	1.000	186	0%	96	29.2%	-	-	-	-	-	superfamily_Amine_DH_B_like
FSTL5	56884	genome.wustl.edu	37	4	162421211	162421211	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020116.3	-1	validated	p.F472Y	1.000	441	0%	177	32.8%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Amine_DH_B_like
FSTL5	56884	genome.wustl.edu	37	4	162680677	162680677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020116.3	-1	validated	p.K205Q	1.000	170	0%	65	32.3%	-	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_efhand,superfamily_SSF47473
NPY1R	4886	genome.wustl.edu	37	4	164247644	164247644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000909.4	-1	validated	p.K21N	0.000	356	0.3%	186	37.1%	-	-	unknown(0)	-	-	superfamily_Family A G protein-coupled receptor-like
FAM218A	152756	genome.wustl.edu	37	4	165878411	165878411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153027.1	+1	predicted	p.E79D	0.001	71	0%	70	37.1%	-	-	benign(0.018)	-	-	NULL
TRIM60	166655	genome.wustl.edu	37	4	165962355	165962355	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152620.2	+1	reviewed	p.D377	0.000	273	0%	126	22.2%	-	-	-	-	-	HMMPfam_SPRY
KLHL2	11275	genome.wustl.edu	37	4	166141126	166141126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007246.3	+1	validated	p.D23Y	1.000	333	0%	152	31.6%	-	-	benign(0.13)	deleterious(0)	neutral(0.456)	NULL
KLHL2	11275	genome.wustl.edu	37	4	166160001	166160001	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007246.3	+1	validated	p.I111L	0.946	442	0%	169	40.2%	-	-	benign(0.018)	deleterious(0.03)	neutral(0.365)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
CPE	1363	genome.wustl.edu	37	4	166418700	166418700	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001873.2	+1	reviewed	p.E457*	1.000	500	0.2%	206	33%	-	-	-	-	-	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain
TLL1	7092	genome.wustl.edu	37	4	167012355	167012355	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012464.3	+1	reviewed	p.E840*	1.000	334	0%	130	37.7%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SPOCK3	50859	genome.wustl.edu	37	4	167983650	167983650	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016950.2	-1	validated	p.F79	0.987	139	0%	46	41.3%	-	-	-	-	-	NULL
PALLD	23022	genome.wustl.edu	37	4	169845492	169845492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016081.3	+1	reviewed	p.R1032C	1.000	219	0%	113	39.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CBR4	84869	genome.wustl.edu	37	4	169911457	169911457	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032783.3	-1	validated	p.T186	0.022	214	0.5%	111	34.2%	-	-	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
SH3RF1	57630	genome.wustl.edu	37	4	170190213	170190213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020870.3	-1	reviewed	p.E51K	1.000	100	0%	69	34.8%	-	-	benign(0.354)	tolerated(0.44)	neutral(0.124)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
NEK1	4750	genome.wustl.edu	37	4	170327826	170327826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012224.1	-1	validated	p.D1071Y	1.000	206	0%	97	44.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NEK1	4750	genome.wustl.edu	37	4	170482998	170482998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012224.1	-1	validated	p.K375N	1.000	102	0%	47	38.3%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
NEK1	4750	genome.wustl.edu	37	4	170511955	170511955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012224.1	-1	validated	p.L106F	1.000	196	0.5%	134	33.6%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CLCN3	1182	genome.wustl.edu	37	4	170628121	170628121	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173872.2	+1	validated	p.K618T	1.000	443	0%	302	33.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
C4orf27	54969	genome.wustl.edu	37	4	170652862	170652862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017867.2	-1	validated	p.G301D	1.000	230	0.4%	134	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2228
MFAP3L	9848	genome.wustl.edu	37	4	170913057	170913057	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021647.6	-1	validated	p.I234	0.982	291	0%	202	15.3%	-	-	-	-	-	NULL
GALNTL6	442117	genome.wustl.edu	37	4	172735792	172735792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034845.2	+1	validated	p.F21V	1.000	384	0%	214	38.8%	-	-	possibly_damaging(0.675)	deleterious(0.01)	deleterious(0.645)	NULL
GALNTL6	442117	genome.wustl.edu	37	4	173873283	173873283	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034845.2	+1	validated	p.I415	1.000	91	0%	77	27.3%	-	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
GALNT7	51809	genome.wustl.edu	37	4	174216610	174216610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017423.2	+1	reviewed	p.R273Q	1.000	307	0%	132	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
HMGB2	3148	genome.wustl.edu	37	4	174254717	174254717	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130688.1	-1	reviewed	p.K28	1.000	306	0%	165	17%	-	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
SAP30	8819	genome.wustl.edu	37	4	174294593	174294593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003864.3	+1	reviewed	p.R123Q	1.000	388	0%	194	29.4%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
MORF4	10934	genome.wustl.edu	37	4	174537609	174537609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006792.2	-1	validated	p.F62L	0.999	388	0%	216	38.9%	-	-	-	-	-	HMMPfam_MRG
FBXO8	26269	genome.wustl.edu	37	4	175158640	175158640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012180.2	-1	reviewed	p.A295T	1.000	289	0%	157	35%	-	-	probably_damaging(0.986)	tolerated(0.14)	deleterious(0.684)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
CEP44	80817	genome.wustl.edu	37	4	175231944	175231944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145314.1	+1	validated	p.F299C	0.000	200	0%	73	42.5%	-	-	benign(0.057)	tolerated(0.06)	neutral(0.326)	NULL
CEP44	80817	genome.wustl.edu	37	4	175237363	175237363	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145314.1	+1	validated	p.S336	1.000	330	0%	146	13.7%	-	-	-	-	-	NULL
HPGD	3248	genome.wustl.edu	37	4	175413165	175413165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000860.4	-1	reviewed	p.S248Y	0.828	385	0%	220	31.8%	-	-	possibly_damaging(0.785)	deleterious(0.01)	deleterious(0.700)	NULL
HPGD	3248	genome.wustl.edu	37	4	175439171	175439171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000860.4	-1	reviewed	p.A92D	1.000	420	0%	200	34%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-bd
GLRA3	8001	genome.wustl.edu	37	4	175564972	175564972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006529.2	-1	validated	p.L454I	1.000	154	0%	81	11.1%	-	-	benign(0.009)	tolerated(0.75)	neutral(0.002)	superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GLRA3	8001	genome.wustl.edu	37	4	175565006	175565006	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006529.2	-1	validated	p.I442M	1.000	175	0%	85	36.5%	-	-	benign(0.208)	deleterious(0.01)	neutral(0.426)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GLRA3	8001	genome.wustl.edu	37	4	175649694	175649694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006529.2	-1	validated	p.F141L	1.000	274	0%	148	32.4%	-	-	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
WDR17	116966	genome.wustl.edu	37	4	177056310	177056310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170710.4	+1	reviewed	p.L408I	1.000	268	0%	130	35.4%	-	-	benign(0.095)	tolerated(0.49)	neutral(0.018)	HMMSmart_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like,HMMPfam_WD40
SPATA4	132851	genome.wustl.edu	37	4	177106011	177106011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144644.2	-1	provisional	p.E280*	0.007	453	0%	250	30%	-	-	-	-	-	NULL
ASB5	140458	genome.wustl.edu	37	4	177142315	177142315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080874.2	-1	reviewed	p.L221I	1.000	132	0%	63	44.4%	-	-	probably_damaging(0.966)	deleterious(0.04)	deleterious(0.757)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
VEGFC	7424	genome.wustl.edu	37	4	177650733	177650733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000280193	-1	known	p.E105D	0.024	561	0.2%	263	22.4%	-	-	benign(0.008)	tolerated(0.62)	neutral(0.004)	NULL
ING2	3622	genome.wustl.edu	37	4	184431587	184431587	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001564.2	+1	validated	p.E109*	1.000	162	0.6%	76	26.3%	-	-	-	-	-	NULL
TRAPPC11	60684	genome.wustl.edu	37	4	184614818	184614818	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021942.4	+1	validated	p.L772M	1.000	308	0%	144	43.1%	-	-	benign(0.015)	tolerated(0.11)	neutral(0.272)	NULL
STOX2	56977	genome.wustl.edu	37	4	184931469	184931469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020225.1	+1	provisional	p.S493L	0.997	121	0%	62	27.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENPP6	133121	genome.wustl.edu	37	4	185038131	185038131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153343.3	-1	validated	p.D245N	0.989	259	0%	142	28.9%	-	-	possibly_damaging(0.925)	tolerated(0.48)	neutral(0.384)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP6	133121	genome.wustl.edu	37	4	185138827	185138827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153343.3	-1	validated	p.G49V	0.999	142	0%	65	36.9%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
IRF2	3660	genome.wustl.edu	37	4	185339723	185339723	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505067	-1	known	p.P8S	1.000	326	0%	217	36.4%	-	-	-	-	-	NULL
KIAA1430	57587	genome.wustl.edu	37	4	186111880	186111880	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020827.1	-1	validated	p.N157	0.001	268	0%	190	13.2%	-	-	-	-	-	NULL
KIAA1430	57587	genome.wustl.edu	37	4	186112193	186112193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020827.1	-1	validated	p.S53L	0.089	455	0%	215	11.2%	-	-	benign(0)	tolerated(0.9)	-	NULL
KIAA1430	57587	genome.wustl.edu	37	4	186112223	186112223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020827.1	-1	validated	p.R43I	0.013	324	0%	156	39.1%	-	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
SNX25	83891	genome.wustl.edu	37	4	186272683	186272683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031953.2	+1	validated	p.D632N	1.000	404	0%	194	34.5%	-	-	possibly_damaging(0.833)	tolerated(0.54)	neutral(0.325)	superfamily_PX
ANKRD37	353322	genome.wustl.edu	37	4	186320918	186320918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335174	+1	known	p.R156M	0.940	209	0%	99	36.4%	-	-	benign(0.31)	deleterious(0)	deleterious(0.541)	NULL
CCDC110	256309	genome.wustl.edu	37	4	186366679	186366679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152775.3	-1	validated	p.D827Y	0.000	280	0%	112	32.1%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
CCDC110	256309	genome.wustl.edu	37	4	186379786	186379786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152775.3	-1	validated	p.T652I	0.001	247	0%	135	38.5%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186559309	186559309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003603.5	-1	reviewed	p.R277H	1.000	324	0%	170	34.1%	-	-	unknown(0)	tolerated(0.16)	-	NULL
SORBS2	8470	genome.wustl.edu	37	4	186570637	186570637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021069.4	-1	reviewed	p.R185W	0.031	518	0%	257	12.5%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186599611	186599611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003603.5	-1	reviewed	p.R20Q	1.000	470	0%	183	39.9%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
TLR3	7098	genome.wustl.edu	37	4	187004356	187004356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003265.2	+1	reviewed	p.R506C	0.032	107	0.9%	94	31.9%	-	-	possibly_damaging(0.857)	tolerated(0.18)	neutral(0.387)	HMMSmart_LRR_TYP,superfamily_SSF52058
CYP4V2	285440	genome.wustl.edu	37	4	187122437	187122437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207352.3	+1	reviewed	p.E310K	0.013	347	0%	163	12.3%	-	-	benign(0.003)	tolerated(0.2)	neutral(0.049)	HMMPfam_p450,superfamily_Cytochrome P450
F11	2160	genome.wustl.edu	37	4	187201165	187201165	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000128.3	+1	reviewed	e7-1	1.000	147	0.7%	77	36.4%	-	-	-	-	-	-
F11	2160	genome.wustl.edu	37	4	187206863	187206863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000128.3	+1	reviewed	p.S459Y	0.877	344	0%	182	13.7%	-	-	benign(0.092)	deleterious(0)	neutral(0.452)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FAT1	2195	genome.wustl.edu	37	4	187521113	187521113	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.T4014	0.000	133	0%	78	42.3%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
FAT1	2195	genome.wustl.edu	37	4	187539951	187539951	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.R2597*	0.986	158	0%	77	36.4%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187584530	187584530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.S1168L	0.920	322	0%	176	27.8%	-	-	benign(0.121)	tolerated(0.47)	neutral(0.020)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187630847	187630847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.E45D	0.999	179	0%	102	37.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin-like
ZFP42	132625	genome.wustl.edu	37	4	188924294	188924294	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174900.3	+1	validated	p.F111	0.000	184	0%	87	36.8%	-	-	-	-	-	NULL
TRIML2	205860	genome.wustl.edu	37	4	189013047	189013047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173553.1	-1	provisional	p.S215F	0.706	221	0%	159	34%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_PRY
TRIML2	205860	genome.wustl.edu	37	4	189026343	189026343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173553.1	-1	provisional	p.E10D	0.000	703	0%	436	32.3%	-	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	NULL
TRIML1	339976	genome.wustl.edu	37	4	189068024	189068024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178556.3	+1	provisional	p.S302L	0.998	135	0%	58	29.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PRY
TUBB7P	56604	genome.wustl.edu	37	4	190903980	190903980	+	Missense_Mutation	SNP	C	C	A	rs182645267	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020040.3	-1	validated	p.D335Y	1.000	120	0%	75	33.3%	-	-	-	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
LRRC14B	389257	genome.wustl.edu	37	5	191703	191703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080478.1	+1	provisional	p.S17F	0.969	41	0%	35	42.9%	-	-	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
SDHA	6389	genome.wustl.edu	37	5	225650	225650	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004168.2	+1	reviewed	p.T143	0.312	114	0%	103	38.8%	-	-	-	-	-	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain
EXOC3	11336	genome.wustl.edu	37	5	446350	446350	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007277.4	+1	reviewed	p.A10	0.368	127	0%	62	40.3%	-	-	-	-	-	NULL
BRD9	65980	genome.wustl.edu	37	5	886845	886845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023924.4	-1	validated	p.M136T	1.000	211	0%	164	37.2%	-	-	possibly_damaging(0.448)	deleterious(0.04)	deleterious(0.495)	superfamily_Bromodomain
SLC12A7	10723	genome.wustl.edu	37	5	1074768	1074768	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006598.2	-1	validated	p.G662	0.923	34	0%	17	35.3%	-	-	-	-	-	HMMPfam_AA_permease
TERT	7015	genome.wustl.edu	37	5	1264590	1264590	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198253.2	-1	reviewed	p.A924	0.065	66	0%	50	38%	-	-	-	-	-	NULL
TERT	7015	genome.wustl.edu	37	5	1272354	1272354	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198253.2	-1	reviewed	p.F776	0.640	51	0%	27	40.7%	-	-	-	-	-	superfamily_DNA/RNA polymerases
SLC6A3	6531	genome.wustl.edu	37	5	1406356	1406356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044.4	-1	reviewed	p.P516S	1.000	29	0%	17	23.5%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_SNF
LPCAT1	79888	genome.wustl.edu	37	5	1501680	1501680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000475622	-1	known	p.P54T	0.715	67	0%	38	34.2%	-	-	-	-	-	NULL
MRPL36	64979	genome.wustl.edu	37	5	1798905	1798905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032479.3	-1	reviewed	p.R49C	0.000	141	0.7%	113	45.1%	-	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
IRX4	50805	genome.wustl.edu	37	5	1879928	1879928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508261	-1	known	p.A155V	1.000	215	0.9%	139	43.9%	-	-	unknown(0)	-	-	NULL
IRX2	153572	genome.wustl.edu	37	5	2749791	2749791	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134222.1	-1	validated	p.N120	1.000	257	0.4%	210	31.9%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
IRX1	79192	genome.wustl.edu	37	5	3599732	3599732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024337.3	+1	validated	p.D224N	1.000	105	0%	63	46%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5146499	5146499	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.F144	1.000	97	0%	57	38.6%	-	-	-	-	-	HMMPfam_Pep_M12B_propep
ADAMTS16	170690	genome.wustl.edu	37	5	5190221	5190221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.K395N	1.000	226	0%	170	42.9%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
KIAA0947	23379	genome.wustl.edu	37	5	5464686	5464686	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.N1747H	1.000	115	0%	65	40%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SRD5A1	6715	genome.wustl.edu	37	5	6663040	6663040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001047.2	+1	validated	p.T225M	0.993	476	0%	252	39.7%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Steroid_dh
SRD5A1	6715	genome.wustl.edu	37	5	6668359	6668359	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001047.2	+1	validated	p.I253S	0.319	281	0%	104	41.3%	-	-	benign(0.015)	tolerated(0.06)	neutral(0.323)	HMMPfam_Steroid_dh
PAPD7	11044	genome.wustl.edu	37	5	6742686	6742686	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006999.4	+1	reviewed	p.A114	0.022	231	0%	90	36.7%	-	-	-	-	-	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
ADCY2	108	genome.wustl.edu	37	5	7773141	7773141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020546.2	+1	reviewed	p.V771M	1.000	340	0%	207	36.7%	-	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	NULL
CCT5	22948	genome.wustl.edu	37	5	10261835	10261835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012073.3	+1	reviewed	p.F386C	1.000	264	0%	140	40.7%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
CTNND2	1501	genome.wustl.edu	37	5	11022975	11022975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.E969K	1.000	352	0%	288	40.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM repeat
CTNND2	1501	genome.wustl.edu	37	5	11159845	11159845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.D668N	1.000	302	0%	172	33.1%	-	-	possibly_damaging(0.636)	deleterious(0)	deleterious(0.667)	HMMSmart_SM00185,superfamily_ARM repeat
CTNND2	1501	genome.wustl.edu	37	5	11411748	11411748	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.I113	0.999	231	0%	140	37.9%	-	-	-	-	-	NULL
CTNND2	1501	genome.wustl.edu	37	5	11565143	11565143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.R67Q	1.000	111	0%	77	31.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13701497	13701497	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.E4463*	1.000	155	0.6%	47	34%	-	-	-	-	-	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13753537	13753537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.K3559N	0.008	265	0%	150	26%	-	-	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13786338	13786338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.A2924T	0.001	168	0%	123	35.8%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13814920	13814920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.D2342N	1.000	157	0%	84	48.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13829758	13829758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.R2102H	1.000	218	0%	119	40.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13841860	13841860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.A1809T	0.001	247	0%	138	34.8%	-	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_DHC_N2
DNAH5	1767	genome.wustl.edu	37	5	13864727	13864727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.A1459T	1.000	102	0%	71	32.4%	-	-	possibly_damaging(0.768)	deleterious(0.01)	deleterious(0.691)	HMMPfam_DHC_N2
DNAH5	1767	genome.wustl.edu	37	5	13919297	13919297	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.S321	0.339	126	0%	89	41.6%	-	-	-	-	-	HMMPfam_DHC_N1
TRIO	7204	genome.wustl.edu	37	5	14290918	14290918	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.E212*	1.000	260	0%	138	43.5%	-	-	-	-	-	superfamily_CRAL/TRIO domain
TRIO	7204	genome.wustl.edu	37	5	14291101	14291101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.E273K	1.000	130	0%	56	17.9%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
TRIO	7204	genome.wustl.edu	37	5	14389473	14389473	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.G1342*	1.000	269	0%	131	29%	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TRIO	7204	genome.wustl.edu	37	5	14405990	14405990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.K1584E	1.000	75	0%	41	43.9%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TRIO	7204	genome.wustl.edu	37	5	14471497	14471497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.S1945L	1.000	220	0%	142	33.1%	-	-	unknown(0)	tolerated(0.3)	-	superfamily_DBL homology domain (DH-domain)
FAM105A	54491	genome.wustl.edu	37	5	14602293	14602293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019018.2	+1	validated	p.A117V	1.000	373	0%	165	30.3%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
ENSG00000249556	0	genome.wustl.edu	37	5	14652622	14652622	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515374	+1	novel	NULL	1.000	57	0%	54	33.3%	-	-	-	-	-	-
LOC402198	402198	genome.wustl.edu	37	5	14961213	14961213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716525.1	+1	model	p.R355K	0.950	52	0%	32	28.1%	-	-	-	-	-	superfamily_PurM C-terminal domain-like
ZNF622	90441	genome.wustl.edu	37	5	16453120	16453120	+	Splice_Site	SNP	A	A	G	rs80230392		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033414.2	-1	provisional	e5+2	1.000	106	0%	77	31.2%	-	-	-	-	-	-
MYO10	4651	genome.wustl.edu	37	5	16758318	16758318	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012334.2	-1	validated	p.D586A	1.000	266	0%	190	38.9%	-	-	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO10	4651	genome.wustl.edu	37	5	16818217	16818217	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012334.2	-1	validated	p.T60	0.000	263	0%	140	37.9%	-	-	-	-	-	HMMSmart_MYSc,superfamily_SSF52540
BASP1	10409	genome.wustl.edu	37	5	17275525	17275525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006317.3	+1	reviewed	p.E67G	0.999	31	0%	23	65.2%	-	-	unknown(0)	deleterious(0.05)	-	HMMPfam_BASP1
CDH18	1016	genome.wustl.edu	37	5	19473779	19473779	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004934.3	-1	reviewed	p.P643	0.993	136	0%	81	30.9%	-	-	-	-	-	HMMPfam_Cadherin_C
CDH18	1016	genome.wustl.edu	37	5	19503203	19503203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004934.3	-1	reviewed	p.S510G	1.000	356	0%	143	37.8%	-	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH12	1010	genome.wustl.edu	37	5	21783553	21783553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004061.3	-1	reviewed	p.G436E	0.990	417	0%	261	36.8%	-	-	benign(0.012)	tolerated(0.69)	neutral(0.003)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PRDM9	56979	genome.wustl.edu	37	5	23524526	23524526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.R345Q	0.866	534	0.2%	271	35.8%	-	-	possibly_damaging(0.516)	tolerated(0.14)	neutral(0.423)	HMMSmart_SET,superfamily_SSF82199
CDH10	1008	genome.wustl.edu	37	5	24498605	24498605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006727.2	-1	reviewed	p.V473M	1.000	166	0%	74	31.1%	-	-	benign(0.392)	tolerated(0.05)	deleterious(0.471)	HMMSmart_CA,superfamily_Cadherin
CDH9	1007	genome.wustl.edu	37	5	26881416	26881416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.D733E	1.000	385	0%	214	38.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin_C
CDH9	1007	genome.wustl.edu	37	5	26881445	26881445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.D724N	1.000	428	0%	242	39.3%	-	-	possibly_damaging(0.735)	tolerated(0.09)	deleterious(0.565)	HMMPfam_Cadherin_C
CDH9	1007	genome.wustl.edu	37	5	26885832	26885832	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.C591	0.365	98	0%	53	24.5%	-	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
CDH9	1007	genome.wustl.edu	37	5	26916017	26916017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.D82N	1.000	207	0%	92	10.9%	-	-	possibly_damaging(0.919)	tolerated(0.06)	deleterious(0.692)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH6	1004	genome.wustl.edu	37	5	31294114	31294114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004932.2	+1	reviewed	p.L92I	1.000	127	0%	51	37.3%	-	-	possibly_damaging(0.597)	tolerated(0.09)	deleterious(0.503)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DROSHA	29102	genome.wustl.edu	37	5	31421399	31421399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013235.4	-1	validated	p.H1169N	1.000	293	0%	130	27.7%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Ribonuclease_3,HMMSmart_SM00535,superfamily_RNase III catalytic domain-like (Pfam 00636)
DROSHA	29102	genome.wustl.edu	37	5	31464401	31464401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013235.4	-1	validated	p.T839M	1.000	257	0%	155	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDZD2	23037	genome.wustl.edu	37	5	31799457	31799457	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.L34	0.473	102	0%	54	33.3%	-	-	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32090530	32090530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.P2326S	1.000	81	0%	48	16.7%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MTMR12	54545	genome.wustl.edu	37	5	32229974	32229974	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040446.1	-1	reviewed	p.P718	0.000	317	0%	166	33.1%	-	-	-	-	-	NULL
TARS	6897	genome.wustl.edu	37	5	33453407	33453407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152295.3	+1	reviewed	p.D115N	1.000	100	0%	55	38.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_TGS,superfamily_TGS-like
ADAMTS12	81792	genome.wustl.edu	37	5	33535007	33535007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030955.2	-1	reviewed	p.L1513I	0.500	610	0%	261	35.2%	-	-	benign(0.119)	tolerated(0.08)	neutral(0.309)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS12	81792	genome.wustl.edu	37	5	33683164	33683164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030955.2	-1	reviewed	p.H292N	1.000	157	1.3%	86	44.2%	-	-	benign(0.312)	tolerated(1)	neutral(0.098)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
SLC45A2	51151	genome.wustl.edu	37	5	33984548	33984548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016180.3	-1	reviewed	p.F47L	0.994	125	0%	69	29%	-	-	unknown(0)	tolerated(0.08)	-	superfamily_MFS general substrate transporter
AMACR	23600	genome.wustl.edu	37	5	33989263	33989263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014324.5	-1	reviewed	p.E362K	0.019	295	0%	194	36.1%	-	-	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_CoA-transferase family III (CaiB/BaiF)
AMACR	23600	genome.wustl.edu	37	5	33989305	33989305	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014324.5	-1	reviewed	p.E348*	1.000	261	0%	175	38.3%	-	-	-	-	-	superfamily_CoA-transferase family III (CaiB/BaiF)
C1QTNF3	114899	genome.wustl.edu	37	5	34028947	34028947	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181435.4	-1	validated	p.Q204	1.000	247	0%	144	32.6%	-	-	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
TTC23L	153657	genome.wustl.edu	37	5	34896874	34896874	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144725.3	+1	validated	e9-1	0.950	195	0%	103	29.1%	-	-	-	-	-	-
BRIX1	55299	genome.wustl.edu	37	5	34924951	34924951	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018321.3	+1	validated	e9-1	1.000	386	0.5%	150	32.7%	-	-	-	-	-	-
BRIX1	55299	genome.wustl.edu	37	5	34925420	34925420	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018321.3	+1	validated	p.P294	0.248	156	0%	63	39.7%	-	-	-	-	-	NULL
AGXT2	64902	genome.wustl.edu	37	5	35010122	35010122	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031900.3	-1	reviewed	p.E441*	1.000	293	0%	183	29%	-	-	-	-	-	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
SPEF2	79925	genome.wustl.edu	37	5	35709072	35709072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.K896N	1.000	187	0%	82	31.7%	-	-	probably_damaging(0.956)	tolerated(0.11)	deleterious(0.671)	NULL
SPEF2	79925	genome.wustl.edu	37	5	35740121	35740121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.T1055N	0.000	258	0%	143	33.6%	-	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
SPEF2	79925	genome.wustl.edu	37	5	35807289	35807289	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.V1771	0.315	283	0%	143	37.1%	-	-	-	-	-	HMMPfam_hATC
IL7R	3575	genome.wustl.edu	37	5	35867471	35867471	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002185.2	+1	reviewed	p.E95	0.951	260	0%	97	49.5%	-	-	-	-	-	NULL
IL7R	3575	genome.wustl.edu	37	5	35867532	35867532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002185.2	+1	reviewed	p.L116I	0.000	235	0%	96	25%	-	-	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
IL7R	3575	genome.wustl.edu	37	5	35874624	35874624	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002185.2	+1	reviewed	p.A260	0.483	620	0%	320	38.4%	-	-	-	-	-	NULL
LMBRD2	92255	genome.wustl.edu	37	5	36105249	36105249	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007527.1	-1	validated	p.E650*	1.000	332	0%	210	35.7%	-	-	-	-	-	NULL
LMBRD2	92255	genome.wustl.edu	37	5	36137422	36137422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007527.1	-1	validated	p.A164T	1.000	241	0%	90	35.6%	-	-	benign(0.046)	tolerated(0.28)	neutral(0.034)	HMMPfam_LMBR1
SLC1A3	6507	genome.wustl.edu	37	5	36671208	36671208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004172.4	+1	reviewed	p.I133V	1.000	248	0%	182	33%	-	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMPfam_SDF
NIPBL	25836	genome.wustl.edu	37	5	36953811	36953811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.M5V	1.000	183	0%	106	43.4%	-	-	possibly_damaging(0.941)	tolerated(0.16)	neutral(0.446)	NULL
NIPBL	25836	genome.wustl.edu	37	5	36975971	36975971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.R321I	1.000	239	0%	132	31.1%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37006465	37006465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.D1288N	1.000	141	0%	91	14.3%	-	-	possibly_damaging(0.461)	deleterious(0.04)	deleterious(0.500)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37007477	37007477	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.Q1380	0.999	341	0%	131	27.5%	-	-	-	-	-	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37020568	37020568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.R1673H	1.000	263	0%	139	41%	-	-	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37020575	37020575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.F1675L	0.991	254	0%	135	34.1%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37048683	37048683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.K2223N	1.000	96	0%	20	20%	-	-	benign(0.026)	tolerated(0.2)	neutral(0.050)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37052561	37052561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.E2386K	1.000	165	0%	131	13%	-	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	superfamily_ARM repeat
C5orf42	65250	genome.wustl.edu	37	5	37180208	37180208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	p.K763T	0.176	141	0%	87	39.1%	-	-	benign(0.236)	tolerated(0.05)	neutral(0.369)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37183599	37183599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	p.L443I	1.000	218	0%	92	40.2%	-	-	benign(0.098)	deleterious(0)	neutral(0.452)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37205456	37205456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508244	-1	known	p.A1084T	0.011	254	0%	124	14.5%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37224364	37224364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508244	-1	known	p.E858K	0.192	589	0.2%	283	36.7%	-	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37224759	37224759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508244	-1	known	p.S792N	0.000	430	0%	247	35.2%	-	-	benign(0.067)	tolerated(0.12)	neutral(0.265)	NULL
WDR70	55100	genome.wustl.edu	37	5	37392140	37392140	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018034.2	+1	provisional	p.E72*	1.000	297	0%	113	36.3%	-	-	-	-	-	NULL
GDNF	2668	genome.wustl.edu	37	5	37816081	37816081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000514.2	-1	reviewed	p.S103Y	0.996	235	0%	143	35%	-	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
EGFLAM	133584	genome.wustl.edu	37	5	38407201	38407201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152403.2	+1	validated	p.S367L	0.998	156	0%	104	42.3%	-	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMSmart_EGF,superfamily_ConA_like_lec_gl
LIFR	3977	genome.wustl.edu	37	5	38489298	38489298	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.S739	0.003	267	0%	124	32.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38506684	38506684	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.E348*	0.998	209	0%	73	39.7%	-	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
RICTOR	253260	genome.wustl.edu	37	5	38944612	38944612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.L1617I	1.000	335	0%	136	39%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_ARM repeat
RICTOR	253260	genome.wustl.edu	37	5	38952300	38952300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.S1042L	1.000	196	0%	123	38.2%	-	-	benign(0.288)	tolerated(0.6)	neutral(0.093)	superfamily_ARM repeat
RICTOR	253260	genome.wustl.edu	37	5	38959935	38959935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.L666R	1.000	385	0.3%	161	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C9	735	genome.wustl.edu	37	5	39288941	39288941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001737.3	-1	reviewed	p.C510Y	0.998	433	0%	233	36.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF57196
C9	735	genome.wustl.edu	37	5	39315889	39315889	+	Nonsense_Mutation	SNP	A	A	C	rs191850540	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001737.3	-1	reviewed	p.Y286*	0.681	255	0%	115	21.7%	-	-	-	-	-	HMMPfam_MACPF
DAB2	1601	genome.wustl.edu	37	5	39377376	39377376	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.T505S	0.004	140	0%	80	33.8%	-	-	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
DAB2	1601	genome.wustl.edu	37	5	39392518	39392518	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.I93	1.000	380	0%	172	40.1%	-	-	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
LOC100127944	100127944	genome.wustl.edu	37	5	40681440	40681440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717341.2	-1	model	p.D246N	0.997	44	0%	47	40.4%	-	-	-	-	-	NULL
RPL37	6167	genome.wustl.edu	37	5	40834304	40834304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000997.4	-1	reviewed	p.K68I	1.000	486	0%	255	34.1%	-	-	possibly_damaging(0.828)	deleterious(0)	deleterious(0.758)	NULL
CARD6	84674	genome.wustl.edu	37	5	40843381	40843381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.K137N	0.687	81	0%	42	50%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CARD6	84674	genome.wustl.edu	37	5	40843583	40843583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.D205Y	1.000	155	0%	58	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C7	730	genome.wustl.edu	37	5	40947899	40947899	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000587.2	+1	reviewed	p.E312*	1.000	215	0%	113	44.2%	-	-	-	-	-	HMMPfam_MACPF,HMMSmart_MACPF
C7	730	genome.wustl.edu	37	5	40959678	40959678	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000587.2	+1	reviewed	p.T539	0.000	301	0%	124	38.7%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
C7	730	genome.wustl.edu	37	5	40964921	40964921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000587.2	+1	reviewed	p.V610M	1.000	433	0%	193	34.7%	-	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
C7	730	genome.wustl.edu	37	5	40972528	40972528	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000587.2	+1	reviewed	p.L636	0.002	496	0%	274	37.6%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
HEATR7B2	133558	genome.wustl.edu	37	5	40999860	40999860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.L1502M	1.000	625	0%	302	39.1%	-	-	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41004914	41004914	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.R1325*	1.000	344	0.3%	173	37%	-	-	-	-	-	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41038935	41038935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.G706V	0.713	139	0%	59	42.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41052674	41052674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.L375I	0.968	197	0%	107	39.3%	-	-	probably_damaging(0.971)	tolerated(0.83)	neutral(0.413)	superfamily_ARM repeat
C6	729	genome.wustl.edu	37	5	41159289	41159289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000065.2	-1	reviewed	p.S584L	0.731	388	0%	168	29.8%	-	-	benign(0.389)	tolerated(0.69)	neutral(0.127)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
C6	729	genome.wustl.edu	37	5	41176813	41176813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000065.2	-1	reviewed	p.S311Y	1.000	268	0%	132	44.7%	-	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_MACPF
C6	729	genome.wustl.edu	37	5	41186287	41186287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000065.2	-1	reviewed	p.P204L	0.997	211	0%	113	10.6%	-	-	benign(0.064)	tolerated(1)	neutral(0.004)	NULL
PLCXD3	345557	genome.wustl.edu	37	5	41382554	41382554	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005473.2	-1	validated	p.V62	0.996	107	0%	59	15.3%	-	-	-	-	-	superfamily_PLC-like_Pdiesterase_TIM-brl
C5orf51	285636	genome.wustl.edu	37	5	41907899	41907899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175921.4	+1	validated	p.E54D	0.963	210	0%	85	25.9%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
ZNF131	7690	genome.wustl.edu	37	5	43161837	43161837	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003432.1	+1	validated	p.E252	1.000	130	0%	74	36.5%	-	-	-	-	-	NULL
NIM1	167359	genome.wustl.edu	37	5	43277182	43277182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153361.2	+1	provisional	p.D106Y	1.000	236	0%	109	27.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HMGCS1	3157	genome.wustl.edu	37	5	43292990	43292990	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098272.1	-1	validated	p.F423	1.000	192	0%	105	38.1%	-	-	-	-	-	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like
MRPS30	10884	genome.wustl.edu	37	5	44809582	44809582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016640.3	+1	reviewed	p.S173Y	0.003	45	0%	27	37%	-	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	HMMPfam_PDCD9
HCN1	348980	genome.wustl.edu	37	5	45303726	45303726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021072.2	-1	validated	p.K531N	1.000	242	0%	118	39.8%	-	-	possibly_damaging(0.729)	tolerated(0.09)	deleterious(0.562)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
HCN1	348980	genome.wustl.edu	37	5	45462110	45462110	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021072.2	-1	validated	e3-1	1.000	117	0%	61	34.4%	-	-	-	-	-	-
EMB	133418	genome.wustl.edu	37	5	49699022	49699022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198449.2	-1	reviewed	p.K289N	0.000	124	0%	58	37.9%	-	-	possibly_damaging(0.731)	tolerated(0.05)	deleterious(0.613)	NULL
PARP8	79668	genome.wustl.edu	37	5	50090073	50090073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024615.3	+1	validated	p.K257R	1.000	287	0%	127	34.6%	-	-	possibly_damaging(0.837)	tolerated(0.07)	deleterious(0.639)	NULL
PARP8	79668	genome.wustl.edu	37	5	50122606	50122606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024615.3	+1	validated	p.R649I	1.000	240	0%	107	36.4%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_ADP-ribosylation
PARP8	79668	genome.wustl.edu	37	5	50137871	50137871	+	Missense_Mutation	SNP	G	G	A	rs186735992	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024615.3	+1	validated	p.R845Q	1.000	219	0%	69	39.1%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
ISL1	3670	genome.wustl.edu	37	5	50683460	50683460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002202.2	+1	reviewed	p.E119K	1.000	60	0%	61	29.5%	-	-	probably_damaging(0.985)	deleterious(0.05)	deleterious(0.777)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PELO	53918	genome.wustl.edu	37	5	52096740	52096740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015946.4	+1	reviewed	p.R171M	1.000	93	0%	72	36.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_eRF1_2
ITGA2	3673	genome.wustl.edu	37	5	52386352	52386352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002203.3	+1	reviewed	p.G1157S	0.978	205	0%	86	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_alpha,PatternScan_INTEGRIN_ALPHA
SKIV2L2	23517	genome.wustl.edu	37	5	54618213	54618213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015360.4	+1	validated	p.D65Y	1.000	309	0%	125	39.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52540
SKIV2L2	23517	genome.wustl.edu	37	5	54618270	54618270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015360.4	+1	validated	p.E84*	0.990	283	0%	106	42.5%	-	-	-	-	-	superfamily_SSF52540
SKIV2L2	23517	genome.wustl.edu	37	5	54649099	54649099	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015360.4	+1	validated	e14+2	1.000	212	0%	96	29.2%	-	-	-	-	-	-
SKIV2L2	23517	genome.wustl.edu	37	5	54718747	54718747	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015360.4	+1	validated	p.R1005*	1.000	362	0%	174	32.2%	-	-	-	-	-	HMMPfam_DSHCT
SLC38A9	153129	genome.wustl.edu	37	5	54922370	54922370	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173514.2	-1	validated	p.F546	0.886	238	0%	120	34.2%	-	-	-	-	-	NULL
DDX4	54514	genome.wustl.edu	37	5	55082460	55082460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024415.2	+1	validated	p.D327Y	1.000	149	0%	80	31.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
IL31RA	133396	genome.wustl.edu	37	5	55212767	55212767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139017.4	+1	validated	p.S705L	0.000	123	0%	65	46.2%	-	-	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
IL31RA	133396	genome.wustl.edu	37	5	55212884	55212884	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139017.4	+1	validated	p.S744*	0.999	117	0%	72	13.9%	-	-	-	-	-	NULL
ANKRD55	79722	genome.wustl.edu	37	5	55396125	55396125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024669.2	-1	validated	p.S577Y	0.832	375	0%	199	36.2%	-	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
LOC345645	345645	genome.wustl.edu	37	5	55571574	55571574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342506.1	-1	model	p.R267I	1.000	312	0%	129	36.4%	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP3K1	4214	genome.wustl.edu	37	5	56177934	56177934	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005921.1	+1	validated	p.S969	0.990	258	0%	119	40.3%	-	-	-	-	-	NULL
SETD9	133383	genome.wustl.edu	37	5	56212667	56212667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153706.3	+1	validated	p.A280T	0.871	633	0%	344	35.2%	-	-	benign(0.119)	deleterious(0.02)	neutral(0.393)	superfamily_SET domain
RAB3C	115827	genome.wustl.edu	37	5	57913668	57913668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138453.2	+1	provisional	p.N75H	1.000	112	0%	61	39.3%	-	-	benign(0.007)	tolerated(0.22)	neutral(0.042)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
RAB3C	115827	genome.wustl.edu	37	5	58147050	58147050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138453.2	+1	provisional	p.R186C	1.000	206	0%	110	30.9%	-	-	benign(0.159)	deleterious(0.03)	neutral(0.379)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
ELOVL7	79993	genome.wustl.edu	37	5	60083202	60083202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104558.1	-1	validated	p.S8L	0.988	352	0%	179	35.2%	-	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
ZSWIM6	57688	genome.wustl.edu	37	5	60817240	60817240	+	Missense_Mutation	SNP	C	C	T	rs190882707	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020928.1	+1	provisional	p.A495V	1.000	183	0%	90	36.7%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
IPO11	51194	genome.wustl.edu	37	5	61747747	61747747	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134779.1	+1	validated	p.K208T	1.000	154	0%	113	38.1%	-	-	benign(0.177)	deleterious(0.03)	neutral(0.381)	superfamily_ARM repeat
IPO11	51194	genome.wustl.edu	37	5	61789943	61789943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134779.1	+1	validated	p.D568Y	1.000	305	0%	128	35.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
LRRC70	100130733	genome.wustl.edu	37	5	61877067	61877067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181506.4	+1	validated	p.R601Q	0.000	217	0.5%	91	36.3%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
HTR1A	3350	genome.wustl.edu	37	5	63256583	63256583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000524.2	-1	validated	p.E322K	1.000	44	0%	56	25%	-	-	benign(0.005)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CWC27	10283	genome.wustl.edu	37	5	64079739	64079739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005869.2	+1	validated	p.G110D	1.000	314	0%	182	36.8%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
TRIM23	373	genome.wustl.edu	37	5	64887676	64887676	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001656.3	-1	reviewed	p.R549*	1.000	331	0%	132	39.4%	-	-	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM23	373	genome.wustl.edu	37	5	64909948	64909948	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001656.3	-1	reviewed	p.E115*	1.000	350	0%	172	41.9%	-	-	-	-	-	NULL
NLN	57486	genome.wustl.edu	37	5	65081685	65081685	+	Silent	SNP	C	C	T	rs189259847	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020726.3	+1	provisional	p.F302	0.998	177	0%	122	36.1%	-	-	-	-	-	HMMPfam_Peptidase_M3,superfamily_SSF55486
MAST4	375449	genome.wustl.edu	37	5	66460654	66460654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015183.2	+1	validated	p.L1694I	0.168	105	0%	53	39.6%	-	-	benign(0.323)	deleterious(0)	deleterious(0.545)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67522657	67522657	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.E52*	1.000	158	0%	56	30.4%	-	-	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain
SLC30A5	64924	genome.wustl.edu	37	5	68411876	68411876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022902.2	+1	provisional	p.R303C	1.000	607	0%	331	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCNB1	891	genome.wustl.edu	37	5	68470114	68470114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031966.2	+1	reviewed	p.R195W	1.000	316	0%	150	29.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cyclin_N,superfamily_Cyclin_like
CDK7	1022	genome.wustl.edu	37	5	68568852	68568852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001799.3	+1	validated	p.R283Q	1.000	164	0%	75	29.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TAF9	6880	genome.wustl.edu	37	5	68661293	68661293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015892.1	-1	validated	p.F91C	1.000	295	0%	197	48.2%	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_TFIID-31kDa
MARVELD2	153562	genome.wustl.edu	37	5	68716252	68716252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038603.2	+1	validated	p.F347S	1.000	202	0%	109	40.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MARVEL
BDP1	55814	genome.wustl.edu	37	5	70763227	70763227	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.E278*	1.000	289	0%	160	31.9%	-	-	-	-	-	NULL
BDP1	55814	genome.wustl.edu	37	5	70793191	70793191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.L632I	0.030	212	0%	100	28%	-	-	benign(0.012)	tolerated(0.35)	neutral(0.021)	NULL
BDP1	55814	genome.wustl.edu	37	5	70800471	70800471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.Q755H	0.329	233	0%	100	41%	-	-	possibly_damaging(0.513)	deleterious(0)	deleterious(0.617)	NULL
BDP1	55814	genome.wustl.edu	37	5	70819908	70819908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.R1844C	0.995	199	0%	95	35.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71411572	71411572	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.E78*	1.000	279	0%	150	24.7%	-	-	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71491422	71491422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.S747Y	0.712	87	0%	25	32%	-	-	unknown(0)	deleterious(0)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71491766	71491766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.E862K	0.996	68	0%	34	29.4%	-	-	unknown(0)	tolerated(0.17)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71492136	71492136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.Y985C	0.009	269	0%	106	34%	-	-	unknown(0)	tolerated(0.08)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71493401	71493401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.E1407K	0.990	117	0%	65	32.3%	-	-	unknown(0)	deleterious(0.01)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71495411	71495411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.R2077C	1.000	242	0.4%	137	37.2%	-	-	unknown(0)	deleterious(0.03)	-	NULL
MRPS27	23107	genome.wustl.edu	37	5	71516782	71516782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015084.2	-1	reviewed	p.A400V	0.897	433	0%	251	31.9%	-	-	unknown(0)	tolerated(0.27)	-	HMMPfam_MRP-S27
PTCD2	79810	genome.wustl.edu	37	5	71627158	71627158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024754.3	+1	validated	p.E142K	0.997	768	0%	411	12.7%	-	-	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	NULL
ZNF366	167465	genome.wustl.edu	37	5	71756025	71756025	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152625.1	-1	provisional	p.P433	0.212	196	0.5%	162	43.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FCHO2	115548	genome.wustl.edu	37	5	72302338	72302338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138782.2	+1	validated	p.K188Q	1.000	127	0%	47	14.9%	-	-	possibly_damaging(0.662)	tolerated(0.05)	deleterious(0.580)	NULL
FCHO2	115548	genome.wustl.edu	37	5	72377614	72377614	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138782.2	+1	validated	p.S662*	1.000	360	0%	185	34.6%	-	-	-	-	-	NULL
TMEM171	134285	genome.wustl.edu	37	5	72424277	72424277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173490.6	+1	validated	p.S234Y	0.061	594	0%	257	16.7%	-	-	possibly_damaging(0.887)	deleterious(0.04)	deleterious(0.696)	NULL
UTP15	84135	genome.wustl.edu	37	5	72875781	72875781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032175.2	+1	validated	p.E473D	1.000	293	0%	103	14.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_U3_snoRNA_C
RGNEF	64283	genome.wustl.edu	37	5	73069792	73069792	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080479.2	+1	reviewed	p.N196	0.503	196	0%	94	16%	-	-	-	-	-	NULL
GFM2	84340	genome.wustl.edu	37	5	74041628	74041628	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032380.3	-1	reviewed	p.E242*	1.000	351	0%	176	12.5%	-	-	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM169A	26049	genome.wustl.edu	37	5	74077529	74077529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015566.1	-1	validated	p.S590Y	0.990	345	0%	184	14.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74400370	74400370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.P1615S	0.005	434	0%	230	36.5%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74400682	74400682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.E1511K	0.037	210	0%	143	30.1%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74413984	74413984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.D1282Y	0.009	371	0%	180	35%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_ANK
ANKRD31	256006	genome.wustl.edu	37	5	74489242	74489242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.D398Y	0.000	347	0%	205	41%	-	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
COL4A3BP	10087	genome.wustl.edu	37	5	74754949	74754949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130105.1	-1	reviewed	p.L225I	1.000	465	0%	230	34.3%	-	-	benign(0.255)	tolerated(0.09)	neutral(0.323)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
POLK	51426	genome.wustl.edu	37	5	74842947	74842947	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016218.2	+1	validated	p.E34*	1.000	312	0%	106	34.9%	-	-	-	-	-	NULL
POLK	51426	genome.wustl.edu	37	5	74886221	74886221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016218.2	+1	validated	p.L438I	1.000	363	0%	141	26.2%	-	-	probably_damaging(0.98)	tolerated(0.22)	neutral(0.466)	HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain
POC5	134359	genome.wustl.edu	37	5	75008688	75008688	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099271.1	-1	validated	p.S25	1.000	155	0.6%	81	13.6%	-	-	-	-	-	NULL
IQGAP2	10788	genome.wustl.edu	37	5	75991443	75991443	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006633.2	+1	validated	p.H1386	0.001	134	0%	109	30.3%	-	-	-	-	-	HMMPfam_RasGAP_C
LOC100287744	100287744	genome.wustl.edu	37	5	76128978	76128978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342529.1	-1	model	p.P46S	0.005	353	0%	210	32.9%	-	-	-	-	-	NULL
LOC100287744	100287744	genome.wustl.edu	37	5	76129104	76129104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342529.1	-1	model	p.R4C	0.237	198	0%	139	28.1%	-	-	-	-	-	NULL
CRHBP	1393	genome.wustl.edu	37	5	76249999	76249999	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001882.3	+1	reviewed	p.G107	0.964	46	0%	69	39.1%	-	-	-	-	-	superfamily_Spermadhesin CUB domain,HMMPfam_CRF-BP
CRHBP	1393	genome.wustl.edu	37	5	76264672	76264672	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001882.3	+1	reviewed	p.G311*	0.990	311	0%	193	34.2%	-	-	-	-	-	HMMPfam_CRF-BP
PDE8B	8622	genome.wustl.edu	37	5	76709122	76709122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003719.2	+1	validated	p.K633N	0.998	384	0%	218	31.7%	-	-	possibly_damaging(0.73)	tolerated(0.06)	deleterious(0.589)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
OTP	23440	genome.wustl.edu	37	5	76932659	76932659	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032109.2	-1	reviewed	p.E145A	1.000	63	0%	33	45.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
AP3B1	8546	genome.wustl.edu	37	5	77311299	77311299	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003664.3	-1	reviewed	p.I1022	0.995	219	0%	128	25.8%	-	-	-	-	-	NULL
AP3B1	8546	genome.wustl.edu	37	5	77335050	77335050	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003664.3	-1	reviewed	p.R876*	1.000	451	0%	214	12.1%	-	-	-	-	-	NULL
AP3B1	8546	genome.wustl.edu	37	5	77477341	77477341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003664.3	-1	reviewed	p.R311K	1.000	225	0%	113	26.5%	-	-	probably_damaging(0.957)	deleterious(0.02)	deleterious(0.784)	HMMPfam_Adaptin_N,superfamily_ARM repeat
ENSG00000214890	0	genome.wustl.edu	37	5	78296400	78296400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399189	-1	known	p.S115L	0.000	189	0%	89	34.8%	-	-	-	-	-	NULL
DMGDH	29958	genome.wustl.edu	37	5	78329213	78329213	+	Silent	SNP	A	A	C	rs117591962	byFrequency;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013391.2	-1	reviewed	p.A404	0.998	388	0%	245	22.4%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
ENSG00000201955	0	genome.wustl.edu	37	5	78466126	78466126	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000365085	-1	novel	NULL	0.415	15	0%	14	28.6%	-	-	-	-	-	-
JMY	133746	genome.wustl.edu	37	5	78596080	78596080	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152405.4	+1	validated	p.I544	0.995	238	0%	137	35%	-	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79028240	79028240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.A1218S	0.039	118	0%	44	25%	-	-	possibly_damaging(0.744)	deleterious(0.01)	deleterious(0.679)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79028295	79028295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.S1236F	0.006	70	0%	36	33.3%	-	-	benign(0.049)	deleterious(0)	neutral(0.448)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79028537	79028537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.H1317Y	0.001	177	0%	92	35.9%	-	-	benign(0.173)	deleterious(0.04)	neutral(0.365)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79029828	79029828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.S1747Y	0.970	113	0%	58	13.8%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79030863	79030863	+	Missense_Mutation	SNP	G	G	A	rs143150177	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.S2092N	0.000	70	0%	34	38.2%	-	-	possibly_damaging(0.55)	deleterious(0)	deleterious(0.631)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79032270	79032270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.S2561Y	0.026	246	0%	116	37.9%	-	-	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79033245	79033245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.S2886Y	0.013	124	0%	56	39.3%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79033520	79033520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.E2978*	1.000	30	0%	15	46.7%	-	-	-	-	-	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79743871	79743871	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105251.1	+1	validated	p.H917Q	0.331	168	0%	88	36.4%	-	-	benign(0.064)	tolerated(0.17)	neutral(0.063)	NULL
FAM151B	167555	genome.wustl.edu	37	5	79817946	79817946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205548.1	+1	predicted	p.K220N	0.961	245	0%	135	43%	-	-	benign(0.014)	tolerated(0.65)	neutral(0.004)	HMMPfam_DUF2181
DHFR	1719	genome.wustl.edu	37	5	79945254	79945254	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000791.3	-1	reviewed	p.R66*	1.000	248	0%	104	37.5%	-	-	-	-	-	HMMPfam_DHFR_1,superfamily_Dihydrofolate reductases
MSH3	4437	genome.wustl.edu	37	5	80021366	80021366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002439.3	+1	reviewed	p.D479Y	0.980	339	0%	211	37.4%	-	-	benign(0.049)	deleterious(0.01)	neutral(0.409)	HMMPfam_MutS_II,superfamily_DNA repair protein MutS domain II
RASGRF2	5924	genome.wustl.edu	37	5	80409652	80409652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006909.1	+1	validated	p.P795T	1.000	292	0%	156	42.3%	-	-	benign(0.002)	tolerated(0.52)	neutral(0.009)	HMMPfam_RasGEF_N,superfamily_Ras GEF
RASGRF2	5924	genome.wustl.edu	37	5	80502689	80502689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006909.1	+1	validated	p.D978Y	1.000	593	0.2%	359	37.3%	-	-	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	superfamily_Ras GEF
ACOT12	134526	genome.wustl.edu	37	5	80631635	80631635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130767.2	-1	validated	p.R405H	0.011	222	0%	100	29%	-	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_START,superfamily_Bet v1-like
ACOT12	134526	genome.wustl.edu	37	5	80655779	80655779	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130767.2	-1	validated	p.R147*	0.994	567	0%	269	31.6%	-	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82815578	82815578	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.E485*	0.012	261	0%	98	35.7%	-	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82835349	82835349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.S2176Y	0.688	107	0%	41	34.1%	-	-	benign(0.396)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82837831	82837831	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.T3003	0.000	173	0%	90	41.1%	-	-	-	-	-	NULL
EDIL3	10085	genome.wustl.edu	37	5	83259123	83259123	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005711.3	-1	reviewed	p.D398	1.000	393	0%	162	31.5%	-	-	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
CCNH	902	genome.wustl.edu	37	5	86700665	86700665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001239.2	-1	reviewed	p.E229K	1.000	211	0%	91	19.8%	-	-	possibly_damaging(0.833)	tolerated(0.05)	deleterious(0.663)	superfamily_Cyclin_like
TMEM161B	153396	genome.wustl.edu	37	5	87536731	87536731	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153354.3	-1	provisional	p.G2	1.000	160	0%	71	38%	-	-	-	-	-	HMMPfam_Tmemb_161AB
MEF2C	4208	genome.wustl.edu	37	5	88018626	88018626	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506554	-1	known	p.R382*	1.000	445	0%	216	36.1%	-	-	-	-	-	NULL
LYSMD3	116068	genome.wustl.edu	37	5	89815034	89815034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198273.1	-1	validated	p.T175A	1.000	626	0%	330	28.5%	-	-	possibly_damaging(0.613)	tolerated(0.12)	deleterious(0.473)	NULL
GPR98	84059	genome.wustl.edu	37	5	89923058	89923058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.Q235K	0.272	88	0%	35	20%	-	-	benign(0.01)	tolerated(0.85)	neutral(0.001)	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89949444	89949444	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504142	+1	known	p.N940D	0.994	411	0%	243	35.8%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
GPR98	84059	genome.wustl.edu	37	5	89953737	89953737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.R1465I	1.000	367	0%	157	38.9%	-	-	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	superfamily_Concanavalin A-like lectins/glucanases
GPR98	84059	genome.wustl.edu	37	5	89985766	89985766	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.I2193	1.000	299	0%	120	37.5%	-	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89990344	89990344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.E2591K	0.815	651	0%	346	24.9%	-	-	benign(0.005)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90008155	90008155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.L3032F	1.000	254	0%	111	37.8%	-	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90087050	90087050	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.R4802*	0.112	176	0%	132	37.9%	-	-	-	-	-	NULL
GPR98	84059	genome.wustl.edu	37	5	90098643	90098643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.L4869F	0.913	388	0%	227	37%	-	-	possibly_damaging(0.63)	tolerated(0.18)	neutral(0.276)	NULL
ARRDC3	57561	genome.wustl.edu	37	5	90669614	90669614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020801.2	-1	validated	p.R359W	1.000	422	0%	258	30.2%	-	-	possibly_damaging(0.862)	deleterious(0.02)	deleterious(0.716)	NULL
ARRDC3	57561	genome.wustl.edu	37	5	90670775	90670775	+	Silent	SNP	G	G	A	rs187417675	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020801.2	-1	validated	p.L278	0.280	201	0%	107	40.2%	-	-	-	-	-	HMMPfam_Arrestin_C,superfamily_Ig_E-set
POU5F2	134187	genome.wustl.edu	37	5	93076769	93076769	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153216.1	-1	provisional	p.F167	0.975	304	0%	198	36.4%	-	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_2,superfamily_Lambda_like_DNA
FAM172A	83989	genome.wustl.edu	37	5	93111937	93111937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032042.5	-1	validated	p.W346R	1.000	206	0%	115	37.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Arb2
FAM172A	83989	genome.wustl.edu	37	5	93294605	93294605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032042.5	-1	validated	p.Q148H	1.000	265	0%	125	15.2%	-	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMPfam_Arb2
KIAA0825	285600	genome.wustl.edu	37	5	93856405	93856405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145678.1	-1	validated	p.V173A	0.998	488	0%	217	30.9%	-	-	possibly_damaging(0.822)	tolerated(0.09)	deleterious(0.607)	NULL
MCTP1	79772	genome.wustl.edu	37	5	94043260	94043260	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024717.4	-1	validated	p.E981*	1.000	558	0%	289	31.8%	-	-	-	-	-	NULL
TTC37	9652	genome.wustl.edu	37	5	94838673	94838673	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014639.2	-1	provisional	p.E1084	1.000	495	0%	253	35.2%	-	-	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_Prenyl_trans
TTC37	9652	genome.wustl.edu	37	5	94861373	94861373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014639.2	-1	provisional	p.S380F	0.995	110	0%	43	30.2%	-	-	possibly_damaging(0.455)	tolerated(0.54)	neutral(0.157)	NULL
RFESD	317671	genome.wustl.edu	37	5	94988830	94988830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131065.1	+1	validated	p.L24I	0.290	671	0%	306	31.4%	-	-	benign(0.224)	-	-	NULL
ELL2	22936	genome.wustl.edu	37	5	95224606	95224606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012081.5	-1	validated	p.F631S	1.000	210	0%	82	34.1%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Occludin_ELL
PCSK1	5122	genome.wustl.edu	37	5	95734733	95734733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000439.4	-1	reviewed	p.K480Q	1.000	351	0%	200	30.5%	-	-	benign(0.082)	tolerated(0.52)	neutral(0.015)	superfamily_Gal_bind_like
PCSK1	5122	genome.wustl.edu	37	5	95757661	95757661	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000439.4	-1	reviewed	e5-1	1.000	163	0%	80	37.5%	-	-	-	-	-	-
CAST	831	genome.wustl.edu	37	5	96073607	96073607	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001750.5	+1	reviewed	p.E252*	0.928	336	0%	153	40.5%	-	-	-	-	-	HMMPfam_Calpain_inhib
CAST	831	genome.wustl.edu	37	5	96079433	96079433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173061.2	+1	reviewed	p.R35C	0.001	309	0%	146	31.5%	-	-	possibly_damaging(0.638)	tolerated(0.07)	deleterious(0.542)	NULL
RIOK2	55781	genome.wustl.edu	37	5	96503484	96503484	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018343.2	-1	validated	p.S362A	0.000	159	0%	120	42.5%	-	-	benign(0.002)	tolerated(0.55)	neutral(0.007)	NULL
CHD1	1105	genome.wustl.edu	37	5	98232900	98232900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001270.2	-1	reviewed	p.C497Y	1.000	182	0%	87	33.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GIN1	54826	genome.wustl.edu	37	5	102440361	102440361	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017676.2	-1	validated	p.L175	1.000	229	0%	145	37.2%	-	-	-	-	-	HMMPfam_rve,superfamily_Ribonuclease H-like
PPIP5K2	23262	genome.wustl.edu	37	5	102530629	102530629	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015216.2	+1	provisional	p.I1153	0.031	277	0%	128	26.6%	-	-	-	-	-	NULL
NUDT12	83594	genome.wustl.edu	37	5	102887996	102887996	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031438.2	-1	validated	p.C400	1.000	562	0%	356	35.7%	-	-	-	-	-	HMMPfam_NUDIX,superfamily_Nudix
EFNA5	1946	genome.wustl.edu	37	5	106722984	106722984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001962.2	-1	reviewed	p.R173C	1.000	228	0%	100	34%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMEM232	642987	genome.wustl.edu	37	5	109760569	109760569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039763.3	-1	validated	p.L502I	0.999	278	0%	145	42.1%	-	-	unknown(0)	tolerated(0.32)	-	NULL
EPB41L4A	64097	genome.wustl.edu	37	5	111504758	111504758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022140.3	-1	validated	p.R595Q	0.963	342	0%	199	16.1%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
EPB41L4A	64097	genome.wustl.edu	37	5	111754709	111754709	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022140.3	-1	validated	p.E10*	1.000	193	0%	96	31.2%	-	-	-	-	-	HMMSmart_SM00295,superfamily_Ubiquitin-like
APC	324	genome.wustl.edu	37	5	112174521	112174521	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.V1077D	0.000	209	0%	73	35.6%	-	-	benign(0.086)	deleterious(0.01)	neutral(0.412)	NULL
APC	324	genome.wustl.edu	37	5	112175184	112175184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.S1298Y	0.747	118	0%	49	36.7%	-	-	benign(0.313)	deleterious(0.01)	deleterious(0.503)	NULL
APC	324	genome.wustl.edu	37	5	112177901	112177901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.R2204*	0.999	120	0%	49	20.4%	-	-	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112178682	112178682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.S2464Y	0.995	186	0%	99	31.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_APC_basic
SRP19	6728	genome.wustl.edu	37	5	112203166	112203166	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003135.1	+1	provisional	p.G123*	1.000	446	0%	148	19.6%	-	-	-	-	-	NULL
ZRSR1	7310	genome.wustl.edu	37	5	112228179	112228179	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391338	+1	known	p.S281	1.000	535	0%	290	37.9%	-	-	-	-	-	HMMSmart_RRM,superfamily_SSF54928
REEP5	7905	genome.wustl.edu	37	5	112257840	112257840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005669.4	-1	validated	p.K16N	1.000	69	0%	57	45.6%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
DCP2	167227	genome.wustl.edu	37	5	112327881	112327881	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152624.4	+1	validated	p.W90*	1.000	505	0%	257	30%	-	-	-	-	-	HMMPfam_DCP2,superfamily_Nudix
DCP2	167227	genome.wustl.edu	37	5	112328378	112328378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152624.4	+1	validated	p.V115I	1.000	349	0%	154	38.3%	-	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_NUDIX,superfamily_Nudix
MCC	4163	genome.wustl.edu	37	5	112479008	112479008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085377.1	-1	reviewed	p.T264M	1.000	108	0%	76	32.9%	-	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
TSSK1B	83942	genome.wustl.edu	37	5	112770239	112770239	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032028.3	-1	validated	p.E100*	0.001	221	0%	144	32.6%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KCNN2	3781	genome.wustl.edu	37	5	113831648	113831648	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021614.2	+1	reviewed	p.F503	0.997	174	0%	87	28.7%	-	-	-	-	-	NULL
TRIM36	55521	genome.wustl.edu	37	5	114513447	114513447	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017398.1	-1	reviewed	p.*62Y	0.002	204	0%	127	40.2%	-	-	-	-	-	NULL
FEM1C	56929	genome.wustl.edu	37	5	114861238	114861238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020177.2	-1	validated	p.K207N	1.000	299	0%	200	23%	-	-	benign(0.06)	tolerated(0.4)	neutral(0.020)	HMMSmart_ANK,superfamily_ANK
TICAM2	353376	genome.wustl.edu	37	5	114916356	114916356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021649.5	-1	validated	p.R200C	0.005	276	0%	122	27.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_TIR
TICAM2	353376	genome.wustl.edu	37	5	114916495	114916495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021649.5	-1	validated	p.F153L	0.956	221	0%	123	43.1%	-	-	possibly_damaging(0.574)	tolerated(0.19)	neutral(0.246)	superfamily_TIR
CDO1	1036	genome.wustl.edu	37	5	115152019	115152019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001801.2	-1	validated	p.D26N	1.000	114	1.8%	95	43.2%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_CDO_I
DTWD2	285605	genome.wustl.edu	37	5	118183855	118183855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173666.2	-1	validated	p.R219I	1.000	150	0%	70	30%	-	-	benign(0.004)	tolerated(0.43)	neutral(0.013)	HMMPfam_DTW
DMXL1	1657	genome.wustl.edu	37	5	118485283	118485283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.S1254L	1.000	162	0%	104	23.1%	-	-	possibly_damaging(0.95)	tolerated(0.2)	neutral(0.443)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118487711	118487711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.R1561Q	1.000	500	0.4%	269	30.5%	-	-	probably_damaging(0.968)	deleterious(0.03)	deleterious(0.774)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118533562	118533562	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.I2552	0.002	213	0%	138	30.4%	-	-	-	-	-	superfamily_WD40 repeat-like
DMXL1	1657	genome.wustl.edu	37	5	118574725	118574725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.F2846L	1.000	333	0%	174	29.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
HSD17B4	3295	genome.wustl.edu	37	5	118813124	118813124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000414.2	+1	reviewed	p.R121K	0.980	178	0%	62	27.4%	-	-	benign(0.006)	tolerated(0.37)	neutral(0.019)	HMMPfam_adh_short,superfamily_NAD(P)-bd
HSD17B4	3295	genome.wustl.edu	37	5	118877663	118877663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000414.2	+1	reviewed	p.I729V	1.000	96	0%	71	35.2%	-	-	benign(0.023)	tolerated(0.32)	neutral(0.025)	HMMPfam_SCP2,superfamily_SCP2
PRR16	51334	genome.wustl.edu	37	5	120021930	120021930	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016644.1	+1	provisional	p.V124	0.039	157	0.6%	101	14.9%	-	-	-	-	-	NULL
SNCAIP	9627	genome.wustl.edu	37	5	121759012	121759012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005460.2	+1	reviewed	p.T194A	0.000	102	0%	63	36.5%	-	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
PRDM6	93166	genome.wustl.edu	37	5	122491682	122491682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136239.1	+1	validated	p.Q335H	1.000	339	0%	169	39.1%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ZNF608	57507	genome.wustl.edu	37	5	123979972	123979972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020747.2	-1	validated	p.R1363Q	1.000	278	0%	170	32.4%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZNF608	57507	genome.wustl.edu	37	5	123982957	123982957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020747.2	-1	validated	p.K1040N	1.000	252	0%	141	33.3%	-	-	benign(0.411)	tolerated(0.11)	neutral(0.405)	NULL
PHAX	51808	genome.wustl.edu	37	5	125952952	125952952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032177.2	+1	validated	p.R281Q	1.000	255	0%	148	11.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_GG_bind
MEGF10	84466	genome.wustl.edu	37	5	126667011	126667011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032446.2	+1	validated	p.S4Y	1.000	354	0.3%	141	29.1%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
PRRC1	133619	genome.wustl.edu	37	5	126883689	126883689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442138	+1	known	p.G402S	0.000	182	0%	112	33%	-	-	benign(0.005)	-	-	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127497359	127497359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001046.2	+1	validated	p.R828Q	1.000	101	0%	49	42.9%	-	-	probably_damaging(0.973)	tolerated(0.37)	neutral(0.434)	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127518629	127518629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001046.2	+1	validated	p.E1099*	1.000	278	0%	115	27%	-	-	-	-	-	NULL
FBN2	2201	genome.wustl.edu	37	5	127615904	127615904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.S2373Y	1.000	263	0%	133	33.1%	-	-	possibly_damaging(0.76)	tolerated(0.25)	neutral(0.318)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127713541	127713541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.L585I	1.000	265	0%	137	38.7%	-	-	benign(0.078)	tolerated(0.69)	neutral(0.007)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
SLC27A6	28965	genome.wustl.edu	37	5	128326135	128326135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017372.1	+1	reviewed	p.R316H	1.000	506	0%	214	30.4%	-	-	possibly_damaging(0.574)	deleterious(0.02)	deleterious(0.580)	HMMPfam_AMP-binding,superfamily_SSF56801
ADAMTS19	171019	genome.wustl.edu	37	5	128983473	128983473	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.E624*	1.000	168	0%	122	28.7%	-	-	-	-	-	HMMSmart_SM00608
ADAMTS19	171019	genome.wustl.edu	37	5	129001247	129001247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.E821D	0.999	417	0.2%	183	37.7%	-	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_ADAM_spacer1
HINT1	3094	genome.wustl.edu	37	5	130498252	130498252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506908	-1	known	p.L77I	0.816	252	0%	170	34.7%	-	-	benign(0.024)	tolerated(0.22)	neutral(0.043)	HMMPfam_HIT
RAPGEF6	51735	genome.wustl.edu	37	5	130775333	130775333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016340.5	-1	validated	p.S1229Y	0.998	357	0%	201	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAPGEF6	51735	genome.wustl.edu	37	5	130815407	130815407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016340.5	-1	validated	p.S627F	1.000	467	0%	229	34.5%	-	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	superfamily_Ras GEF
RAD50	10111	genome.wustl.edu	37	5	131927606	131927606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005732.3	+1	reviewed	p.R558M	1.000	95	0%	21	23.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD50	10111	genome.wustl.edu	37	5	131953967	131953967	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455677	+1	known	p.L2*	1.000	205	0%	82	40.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IL4	3565	genome.wustl.edu	37	5	132018273	132018273	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000589.2	+1	reviewed	p.S152	0.000	237	0%	103	29.1%	-	-	-	-	-	HMMSmart_SM00190,superfamily_4-helical cytokines
KIF3A	11127	genome.wustl.edu	37	5	132051452	132051452	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007054.5	-1	validated	p.E376*	1.000	303	0%	141	28.4%	-	-	-	-	-	NULL
AFF4	27125	genome.wustl.edu	37	5	132232040	132232040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014423.3	-1	validated	p.S761F	1.000	413	0%	213	32.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_AF-4
HSPA4	3308	genome.wustl.edu	37	5	132387961	132387961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002154.3	+1	validated	p.D7Y	1.000	20	0%	16	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF53067
PPP2CA	5515	genome.wustl.edu	37	5	133536760	133536760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002715.2	-1	reviewed	p.F164L	1.000	233	0%	116	13.8%	-	-	possibly_damaging(0.728)	deleterious(0.02)	deleterious(0.648)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
CDKL3	51265	genome.wustl.edu	37	5	133695617	133695617	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113575.1	-1	reviewed	p.R111*	1.000	350	0%	197	29.9%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDKL3	51265	genome.wustl.edu	37	5	133702143	133702143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113575.1	-1	reviewed	p.K24N	1.000	345	0%	225	32%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
DDX46	9879	genome.wustl.edu	37	5	134130565	134130565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014829.2	+1	reviewed	p.R551H	1.000	538	0%	332	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
FBXL21	26223	genome.wustl.edu	37	5	135276973	135276973	+	Silent	SNP	C	C	T	rs189150676	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012159.4	+1	validated	p.F306	0.905	277	0%	152	32.9%	-	-	-	-	-	superfamily_RNI-like
FBXL21	26223	genome.wustl.edu	37	5	135277121	135277121	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012159.4	+1	validated	p.E356*	1.000	314	0%	153	32.7%	-	-	-	-	-	superfamily_RNI-like
LECT2	3950	genome.wustl.edu	37	5	135283132	135283132	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002302.2	-1	reviewed	p.K115T	1.000	397	0%	180	32.8%	-	-	possibly_damaging(0.48)	deleterious(0.02)	deleterious(0.542)	HMMPfam_Peptidase_M23
TRPC7	57113	genome.wustl.edu	37	5	135587470	135587470	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378459	-1	known	p.R421C	0.992	105	0%	63	42.9%	-	-	-	-	-	HMMPfam_Ion_trans
SPOCK1	6695	genome.wustl.edu	37	5	136448205	136448205	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004598.3	-1	reviewed	p.S131	0.684	226	0%	115	35.7%	-	-	-	-	-	superfamily_SSF100895
BRD8	10902	genome.wustl.edu	37	5	137486592	137486592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139199.1	-1	reviewed	p.E988K	0.732	401	0%	240	39.6%	-	-	benign(0.158)	deleterious(0)	neutral(0.459)	NULL
CDC23	8697	genome.wustl.edu	37	5	137524780	137524780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004661.3	-1	reviewed	p.E561K	1.000	549	0%	309	35.3%	-	-	possibly_damaging(0.494)	tolerated(0.22)	neutral(0.207)	NULL
FAM53C	51307	genome.wustl.edu	37	5	137681105	137681105	+	Missense_Mutation	SNP	G	G	A	rs34113804	byCluster;byFrequency	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135647.1	+1	validated	p.R243H	1.000	75	0%	51	31.4%	-	-	benign(0.002)	-	-	NULL
KDM3B	51780	genome.wustl.edu	37	5	137727282	137727282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016604.3	+1	validated	p.S654F	1.000	49	0%	22	40.9%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137761238	137761238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016604.3	+1	validated	p.R1460W	1.000	404	0%	184	38.6%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Clavaminate synthase-like
REEP2	51308	genome.wustl.edu	37	5	137780448	137780448	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512126	+1	known	p.S141L	0.593	157	0%	116	23.3%	-	-	-	-	-	NULL
EGR1	1958	genome.wustl.edu	37	5	137803249	137803249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001964.2	+1	reviewed	p.R371C	1.000	226	0.4%	139	37.4%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ETF1	2107	genome.wustl.edu	37	5	137846286	137846286	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004730.2	-1	validated	p.E351*	1.000	378	0%	212	10.8%	-	-	-	-	-	HMMPfam_eRF1_3,superfamily_L30e-like
CTNNA1	1495	genome.wustl.edu	37	5	138160459	138160459	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001903.2	+1	validated	p.E277*	1.000	255	0%	103	35.9%	-	-	-	-	-	HMMPfam_Vinculin
LRRTM2	26045	genome.wustl.edu	37	5	138209199	138209199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015564.2	-1	validated	p.L351I	1.000	313	0%	197	35.5%	-	-	probably_damaging(0.998)	tolerated(0.35)	deleterious(0.495)	NULL
LRRTM2	26045	genome.wustl.edu	37	5	138209345	138209345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015564.2	-1	validated	p.S302F	1.000	289	0%	136	30.1%	-	-	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	superfamily_L domain-like
LRRTM2	26045	genome.wustl.edu	37	5	138209446	138209446	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015564.2	-1	validated	p.I268	0.981	268	0%	147	35.4%	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
CTNNA1	1495	genome.wustl.edu	37	5	138266343	138266343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001903.2	+1	validated	p.R731Q	1.000	207	0%	104	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
MATR3	9782	genome.wustl.edu	37	5	138643732	138643732	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018834.4	+1	reviewed	p.E210*	1.000	432	0%	242	36.8%	-	-	-	-	-	NULL
MATR3	9782	genome.wustl.edu	37	5	138644002	138644002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018834.4	+1	reviewed	p.V300I	1.000	60	0%	28	39.3%	-	-	possibly_damaging(0.706)	deleterious(0.02)	deleterious(0.637)	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2
MATR3	9782	genome.wustl.edu	37	5	138650398	138650398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018834.4	+1	reviewed	p.S316N	1.000	543	0%	306	36.6%	-	-	benign(0.196)	tolerated(0.22)	neutral(0.060)	HMMSmart_ZnF_U1
SLC4A9	83697	genome.wustl.edu	37	5	139744061	139744061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031467.2	+1	validated	p.R501H	1.000	231	0%	213	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139876500	139876500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.E881K	1.000	150	0%	70	30%	-	-	benign(0.003)	tolerated(0.35)	neutral(0.021)	superfamily_ANK
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139889762	139889762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.R1367H	1.000	175	0.6%	94	36.2%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PCDHA1	56147	genome.wustl.edu	37	5	140165903	140165903	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018900.2	+1	reviewed	p.G10*	0.001	141	0%	62	37.1%	-	-	-	-	-	NULL
PCDHA1	56147	genome.wustl.edu	37	5	140167121	140167121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018900.2	+1	reviewed	p.E416K	0.994	159	0%	121	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140186917	140186917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018907.2	+1	reviewed	p.A49T	1.000	108	0%	74	45.9%	-	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140187433	140187433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018907.2	+1	reviewed	p.E221K	0.003	105	0%	49	34.7%	-	-	benign(0.01)	tolerated(0.09)	neutral(0.297)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140187573	140187573	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018907.2	+1	reviewed	p.S267	0.302	110	0%	65	32.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140187737	140187737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018907.2	+1	reviewed	p.G322D	0.392	72	0%	47	46.8%	-	-	benign(0.318)	deleterious(0)	deleterious(0.544)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140201377	140201377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018908.2	+1	reviewed	p.R6I	0.766	197	0%	101	39.6%	-	-	benign(0.024)	deleterious(0)	neutral(0.446)	NULL
PCDHA5	56143	genome.wustl.edu	37	5	140202705	140202705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018908.2	+1	reviewed	p.D449N	1.000	83	0%	85	10.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140208418	140208418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018909.2	+1	reviewed	p.E248K	0.002	124	0%	64	26.6%	-	-	benign(0.002)	tolerated(1)	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215263	140215263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.S432L	0.004	100	0%	91	44%	-	-	benign(0.008)	tolerated(0.06)	neutral(0.323)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215428	140215428	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.N487T	1.000	72	0%	68	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140228494	140228494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.K138N	0.008	195	0%	133	28.6%	-	-	benign(0.055)	tolerated(0.3)	neutral(0.032)	HMMPfam_Cadherin,superfamily_Cadherin-like
LOC100288105	100288105	genome.wustl.edu	37	5	140242427	140242427	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342568.1	-1	model	p.G183	0.551	19	0%	10	50%	-	-	-	-	-	NULL
ENSG00000249608	0	genome.wustl.edu	37	5	140248602	140248602	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512753	-1	known	NULL	0.000	149	0%	86	32.6%	-	-	-	-	-	-
PCDHA12	56137	genome.wustl.edu	37	5	140256006	140256006	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.E317*	1.000	77	0%	41	46.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140263656	140263656	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.S601	0.490	77	0%	67	41.8%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC1	56135	genome.wustl.edu	37	5	140308059	140308059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018898.3	+1	reviewed	p.R528W	0.821	166	0%	92	42.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140346907	140346907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018899.5	+1	reviewed	p.E186K	0.836	33	0%	33	18.2%	-	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347181	140347181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018899.5	+1	reviewed	p.V277A	0.994	81	0%	47	31.9%	-	-	benign(0.025)	tolerated(0.07)	neutral(0.320)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347844	140347844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018899.5	+1	reviewed	p.E498G	0.845	49	0%	25	24%	-	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140432715	140432715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013340.2	+1	reviewed	p.D554Y	1.000	195	0%	126	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB2	56133	genome.wustl.edu	37	5	140476467	140476467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018936.2	+1	reviewed	p.S698L	0.008	89	0%	79	10.1%	-	-	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	NULL
PCDHB3	56132	genome.wustl.edu	37	5	140481092	140481092	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018937.2	+1	reviewed	p.E287*	0.966	59	0%	29	37.9%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB3	56132	genome.wustl.edu	37	5	140482418	140482418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018937.2	+1	reviewed	p.E729K	0.577	174	0%	130	34.6%	-	-	benign(0.017)	tolerated(0.08)	neutral(0.300)	NULL
PCDHB4	56131	genome.wustl.edu	37	5	140502213	140502213	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018938.2	+1	reviewed	p.L211	0.002	214	0%	162	13%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140530007	140530007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.E57*	0.676	409	0%	214	29%	-	-	-	-	-	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140530730	140530730	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.E298*	1.000	246	0%	116	33.6%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140530964	140530964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.N376D	0.640	218	0%	134	36.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140531956	140531956	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.F706	0.043	114	0%	97	29.9%	-	-	-	-	-	NULL
PCDHB8	56128	genome.wustl.edu	37	5	140558823	140558823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.T403I	0.063	811	0%	380	13.7%	-	-	benign(0.058)	tolerated(0.1)	neutral(0.290)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140559405	140559405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.S597L	1.000	43	0%	60	15%	-	-	possibly_damaging(0.874)	deleterious(0)	deleterious(0.784)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140562574	140562574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020957.1	+1	reviewed	p.P147H	0.000	86	0%	47	14.9%	-	-	benign(0.002)	tolerated(0.21)	neutral(0.044)	superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580348	140580348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018931.2	+1	reviewed	p.I334T	0.000	223	0%	140	44.3%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580620	140580620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018931.2	+1	reviewed	p.D425N	0.950	297	0%	120	13.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140588682	140588682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018932.3	+1	reviewed	p.S68Y	0.031	253	0%	155	38.7%	-	-	possibly_damaging(0.931)	tolerated(0.08)	deleterious(0.677)	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140589653	140589653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018932.3	+1	reviewed	p.V392M	0.000	182	0%	99	35.4%	-	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140605055	140605055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018934.2	+1	reviewed	p.V660M	0.957	29	3.4%	28	42.9%	-	-	benign(0.259)	deleterious(0.02)	neutral(0.410)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140605446	140605446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018934.2	+1	reviewed	p.R790Q	0.002	215	0%	129	44.2%	-	-	benign(0.068)	tolerated(0.16)	neutral(0.064)	NULL
PCDHB15	56121	genome.wustl.edu	37	5	140625673	140625673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018935.2	+1	reviewed	p.S176Y	0.009	105	0%	48	43.8%	-	-	possibly_damaging(0.626)	deleterious(0.03)	deleterious(0.583)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SLC25A2	83884	genome.wustl.edu	37	5	140682754	140682754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031947.2	-1	reviewed	p.V227M	0.994	280	0%	192	28.1%	-	-	benign(0.075)	deleterious(0.01)	neutral(0.411)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A2	83884	genome.wustl.edu	37	5	140683342	140683342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031947.2	-1	reviewed	p.D31N	1.000	118	0%	61	42.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PCDHGA1	56114	genome.wustl.edu	37	5	140711803	140711803	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018912.2	+1	reviewed	p.R518*	0.216	197	0%	143	39.2%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140719945	140719945	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018915.2	+1	reviewed	p.A469	0.973	467	0%	164	30.5%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140720191	140720191	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018915.2	+1	reviewed	p.F551	0.000	197	0%	112	30.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140725734	140725734	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018916.3	+1	reviewed	p.L712	0.160	210	0%	191	16.8%	-	-	-	-	-	NULL
PCDHGB1	56104	genome.wustl.edu	37	5	140730136	140730136	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018922.2	+1	reviewed	p.F103	0.658	228	0%	120	35%	-	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140731399	140731399	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018922.2	+1	reviewed	p.F524	0.832	33	0%	25	16%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA4	56111	genome.wustl.edu	37	5	140735595	140735595	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018917.2	+1	reviewed	p.D276	0.991	119	0%	64	42.2%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA4	56111	genome.wustl.edu	37	5	140737183	140737183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018917.2	+1	reviewed	p.L806I	0.995	179	0%	88	23.9%	-	-	-	-	-	NULL
PCDHGB2	56103	genome.wustl.edu	37	5	140740288	140740288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018923.2	+1	reviewed	p.L196I	0.775	114	0%	66	34.8%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140740557	140740557	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018923.2	+1	reviewed	p.D285	0.000	144	0%	75	29.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140740759	140740759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018923.2	+1	reviewed	p.S353P	0.011	118	0%	73	43.8%	-	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140751116	140751116	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018924.2	+1	reviewed	p.Q385	0.000	192	0%	65	35.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140754561	140754561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018919.2	+1	reviewed	p.S304F	0.000	101	0%	67	25.4%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140755428	140755428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018919.2	+1	reviewed	p.A593V	1.000	64	0%	67	40.3%	-	-	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140762750	140762750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018920.2	+1	reviewed	p.I95S	1.000	87	0%	55	41.8%	-	-	benign(0.258)	deleterious(0)	deleterious(0.472)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140767820	140767820	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.I123	0.061	329	0%	188	28.7%	-	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140768288	140768288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.F279L	0.989	139	0%	76	42.1%	-	-	possibly_damaging(0.789)	deleterious(0)	deleterious(0.740)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140772474	140772474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032088.1	+1	reviewed	p.R32C	1.000	59	0%	35	45.7%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140773249	140773249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032088.1	+1	reviewed	p.P290L	0.000	128	0%	67	38.8%	-	-	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140773299	140773299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032088.1	+1	reviewed	p.L307I	0.000	120	0%	72	34.7%	-	-	possibly_damaging(0.937)	tolerated(0.32)	neutral(0.407)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140777844	140777844	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018925.2	+1	reviewed	p.L50	0.942	206	0%	128	23.4%	-	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140778285	140778285	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018925.2	+1	reviewed	p.E197	1.000	44	0%	21	42.9%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783099	140783099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.L194M	1.000	82	0%	61	37.7%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783691	140783691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.S391Y	0.010	131	0%	52	32.7%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783747	140783747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.L410I	0.962	120	0%	51	25.5%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140784372	140784372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.S618L	0.000	81	0%	80	31.2%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140789909	140789909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018926.2	+1	reviewed	p.R714C	0.010	427	0%	317	36.9%	-	-	benign(0.313)	tolerated(0.09)	neutral(0.394)	NULL
PCDHGA10	56106	genome.wustl.edu	37	5	140792769	140792769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018913.2	+1	reviewed	p.K9N	0.001	104	0%	41	22%	-	-	benign(0.025)	deleterious(0.04)	neutral(0.350)	NULL
PCDHGA10	56106	genome.wustl.edu	37	5	140793453	140793453	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018913.2	+1	reviewed	p.F237	0.038	44	0%	39	12.8%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140799139	140799139	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018927.2	+1	reviewed	p.G571	0.957	29	0%	29	37.9%	-	-	-	-	-	superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140801451	140801451	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.G219	0.972	63	0%	53	39.6%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140801943	140801943	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.V383	0.008	95	0%	44	31.8%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140802373	140802373	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.R527*	0.115	173	0%	145	13.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC3	5098	genome.wustl.edu	37	5	140856608	140856608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002588.2	+1	reviewed	p.R309W	0.130	84	0%	56	26.8%	-	-	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140865749	140865749	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018928.2	+1	reviewed	p.R337*	0.499	83	0%	72	33.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140867081	140867081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018928.2	+1	reviewed	p.R781W	1.000	113	0%	93	18.3%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PCDHGC5	56097	genome.wustl.edu	37	5	140869500	140869500	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018929.2	+1	reviewed	p.I231	0.000	161	0%	106	34%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
DIAPH1	1729	genome.wustl.edu	37	5	140908492	140908492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005219.4	-1	reviewed	p.R932Q	0.999	118	0%	70	37.1%	-	-	unknown(0)	tolerated(0.08)	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
HDAC3	8841	genome.wustl.edu	37	5	141009679	141009679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003883.3	-1	reviewed	p.G99R	1.000	163	0%	119	35.3%	-	-	possibly_damaging(0.668)	deleterious(0)	deleterious(0.681)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
RELL2	285613	genome.wustl.edu	37	5	141018369	141018369	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130029.1	+1	validated	p.D64	0.821	421	0%	284	34.5%	-	-	-	-	-	NULL
NDFIP1	80762	genome.wustl.edu	37	5	141524217	141524217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030571.3	+1	reviewed	p.T215N	1.000	135	0%	56	23.2%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_DUF2370
NR3C1	2908	genome.wustl.edu	37	5	142658945	142658945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020825.1	-1	reviewed	p.S738Y	0.491	668	0.1%	310	30.3%	-	-	unknown(0)	-	-	NULL
KCTD16	57528	genome.wustl.edu	37	5	143586650	143586650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020768.3	+1	validated	p.D125N	0.990	152	0%	124	39.5%	-	-	benign(0.01)	tolerated(0.15)	neutral(0.241)	HMMSmart_BTB
KCTD16	57528	genome.wustl.edu	37	5	143853578	143853578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020768.3	+1	validated	p.E396D	0.997	142	0%	43	27.9%	-	-	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	NULL
GRXCR2	643226	genome.wustl.edu	37	5	145239395	145239395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080516.1	-1	provisional	p.F216L	1.000	56	0%	49	38.8%	-	-	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	NULL
GRXCR2	643226	genome.wustl.edu	37	5	145252280	145252280	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080516.1	-1	provisional	p.R84	1.000	138	0%	91	36.3%	-	-	-	-	-	NULL
TCERG1	10915	genome.wustl.edu	37	5	145887490	145887490	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006706.3	+1	reviewed	p.R989*	1.000	305	0%	133	30.1%	-	-	-	-	-	HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain
TCERG1	10915	genome.wustl.edu	37	5	145890187	145890187	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006706.3	+1	reviewed	p.T1093	0.657	151	0%	73	32.9%	-	-	-	-	-	NULL
PPP2R2B	5521	genome.wustl.edu	37	5	146077689	146077689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181676.2	-1	reviewed	p.R66C	1.000	256	0%	126	38.1%	-	-	benign(0.006)	deleterious(0.03)	neutral(0.364)	superfamily_WD40 repeat-like
STK32A	202374	genome.wustl.edu	37	5	146658882	146658882	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112724.1	+1	validated	p.E61*	1.000	205	0%	105	34.3%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DPYSL3	1809	genome.wustl.edu	37	5	146781107	146781107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001387.2	-1	validated	p.A322S	1.000	176	0%	90	36.7%	-	-	benign(0.003)	tolerated(0.29)	neutral(0.029)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP2	9832	genome.wustl.edu	37	5	146997516	146997516	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014790.3	-1	provisional	p.Q768	1.000	393	0%	323	11.5%	-	-	-	-	-	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147028027	147028027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014790.3	-1	provisional	p.R283I	1.000	585	0%	315	33.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147040745	147040745	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014790.3	-1	provisional	p.T131	0.987	137	0%	99	34.3%	-	-	-	-	-	NULL
SPINK5	11005	genome.wustl.edu	37	5	147449950	147449950	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127698.1	+1	reviewed	p.K49T	0.000	167	0%	83	45.8%	-	-	possibly_damaging(0.609)	deleterious(0)	deleterious(0.655)	HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SPINK5	11005	genome.wustl.edu	37	5	147475439	147475439	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127698.1	+1	reviewed	p.E285*	0.350	204	0%	102	22.5%	-	-	-	-	-	NULL
FBXO38	81545	genome.wustl.edu	37	5	147774397	147774397	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205836.1	+1	validated	p.E20*	0.984	396	0%	176	21.6%	-	-	-	-	-	NULL
FBXO38	81545	genome.wustl.edu	37	5	147785891	147785891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205836.1	+1	validated	p.E268K	1.000	246	0%	101	33.7%	-	-	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	superfamily_RNI-like
FBXO38	81545	genome.wustl.edu	37	5	147806853	147806853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205836.1	+1	validated	p.E666K	1.000	136	0%	61	52.5%	-	-	possibly_damaging(0.806)	deleterious(0.03)	deleterious(0.668)	NULL
SH3TC2	79628	genome.wustl.edu	37	5	148408262	148408262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024577.3	-1	reviewed	p.Q385H	1.000	321	0%	156	33.3%	-	-	benign(0.345)	deleterious(0)	deleterious(0.553)	NULL
SH3TC2	79628	genome.wustl.edu	37	5	148431718	148431718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024577.3	-1	reviewed	p.Q46H	0.998	423	0%	220	35.9%	-	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
ABLIM3	22885	genome.wustl.edu	37	5	148637877	148637877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014945.2	+1	validated	p.F654L	1.000	243	0%	96	34.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain
AFAP1L1	134265	genome.wustl.edu	37	5	148687127	148687127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152406.2	+1	validated	p.F233S	1.000	64	0%	47	36.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SLC26A2	1836	genome.wustl.edu	37	5	149360123	149360123	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000112.3	+1	reviewed	p.E323*	0.998	260	0%	200	33%	-	-	-	-	-	HMMPfam_Sulfate_transp
CD74	972	genome.wustl.edu	37	5	149786732	149786732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025159.1	-1	validated	p.R94H	0.964	224	0%	159	28.9%	-	-	probably_damaging(0.972)	tolerated(0.1)	deleterious(0.700)	HMMPfam_MHC2-interact
NDST1	3340	genome.wustl.edu	37	5	149919692	149919692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001543.4	+1	validated	p.G539S	1.000	177	0%	119	38.7%	-	-	probably_damaging(0.993)	tolerated(0.15)	deleterious(0.691)	NULL
SYNPO	11346	genome.wustl.edu	37	5	150029438	150029438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007286.5	+1	validated	p.R534Q	0.470	73	0%	37	21.6%	-	-	possibly_damaging(0.837)	tolerated(0.34)	neutral(0.343)	NULL
RBM22	55696	genome.wustl.edu	37	5	150080537	150080537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018047.2	-1	reviewed	p.S4Y	1.000	120	0%	71	33.8%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
TNIP1	10318	genome.wustl.edu	37	5	150418783	150418783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006058.3	-1	validated	p.D380N	0.968	115	0%	86	39.5%	-	-	possibly_damaging(0.719)	tolerated(0.15)	deleterious(0.502)	NULL
TNIP1	10318	genome.wustl.edu	37	5	150443195	150443195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006058.3	-1	validated	p.D84N	0.977	178	0%	102	42.2%	-	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
SLC36A2	153201	genome.wustl.edu	37	5	150726917	150726917	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181776.2	-1	validated	p.S35	0.002	302	0.3%	147	42.2%	-	-	-	-	-	NULL
FAT2	2196	genome.wustl.edu	37	5	150901612	150901612	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.L3514	0.001	37	0%	33	24.2%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150925890	150925890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.E1600K	0.095	129	0%	75	37.3%	-	-	benign(0.086)	deleterious(0.05)	neutral(0.352)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150931140	150931140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.I1395T	1.000	320	0%	236	31.8%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150946748	150946748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.S582L	0.001	132	0.8%	86	29.1%	-	-	benign(0.032)	tolerated(0.74)	neutral(0.003)	HMMPfam_Cadherin,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150946797	150946797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.E566*	0.997	104	0%	67	32.8%	-	-	-	-	-	superfamily_Cadherin-like
G3BP1	10146	genome.wustl.edu	37	5	151169945	151169945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005754.2	+1	reviewed	p.D53N	1.000	173	0%	73	26%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_NTF2,superfamily_NTF2-like
G3BP1	10146	genome.wustl.edu	37	5	151183522	151183522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005754.2	+1	reviewed	p.R424Q	0.990	160	0%	87	20.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_RNA-binding domain RBD
NMUR2	56923	genome.wustl.edu	37	5	151771983	151771983	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020167.4	-1	reviewed	p.Q339	0.539	198	0%	111	38.7%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
GALNT10	55568	genome.wustl.edu	37	5	153765900	153765900	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198321.3	+1	reviewed	p.F322	0.997	214	0%	161	38.5%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
LARP1	23367	genome.wustl.edu	37	5	154173269	154173269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015315.3	+1	validated	p.R208H	0.988	144	0%	80	13.8%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
LARP1	23367	genome.wustl.edu	37	5	154173497	154173497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015315.3	+1	validated	p.S259P	1.000	103	0%	85	36.5%	-	-	benign(0.35)	tolerated(0.29)	neutral(0.140)	NULL
MRPL22	29093	genome.wustl.edu	37	5	154339543	154339543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014180.3	+1	reviewed	p.L115I	1.000	292	0%	127	37%	-	-	probably_damaging(1)	tolerated(0.66)	deleterious(0.502)	HMMPfam_Ribosomal_L22,superfamily_Ribosomal protein L22
SGCD	6444	genome.wustl.edu	37	5	156021975	156021975	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000337.5	+1	reviewed	p.F139C	1.000	307	0%	178	41%	-	-	possibly_damaging(0.894)	deleterious(0)	deleterious(0.796)	HMMPfam_Sarcoglycan_1
HAVCR2	84868	genome.wustl.edu	37	5	156514244	156514244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032782.3	-1	validated	p.R259C	0.010	268	0%	151	27.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HAVCR2	84868	genome.wustl.edu	37	5	156515960	156515960	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032782.3	-1	validated	p.Q235	0.963	453	0%	241	34%	-	-	-	-	-	NULL
MED7	9443	genome.wustl.edu	37	5	156565988	156565988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100816.1	-1	reviewed	p.R152I	1.000	374	0%	263	37.6%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_MED7
FAM71B	153745	genome.wustl.edu	37	5	156590265	156590265	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130899.2	-1	validated	p.S337	0.012	152	0%	98	32.7%	-	-	-	-	-	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156752630	156752630	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037332.2	+1	validated	p.E656*	1.000	204	0%	121	36.4%	-	-	-	-	-	HMMPfam_FragX_IP
ADAM19	8728	genome.wustl.edu	37	5	156917389	156917389	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033274.2	-1	reviewed	p.C723	0.982	469	0%	253	42.7%	-	-	-	-	-	NULL
ADAM19	8728	genome.wustl.edu	37	5	156923938	156923938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033274.2	-1	reviewed	p.T520A	1.000	55	0%	32	34.4%	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_ADAM_CR,HMMSmart_SM00608
CLINT1	9685	genome.wustl.edu	37	5	157214822	157214822	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014666.2	-1	validated	p.P570	0.000	291	0%	229	36.2%	-	-	-	-	-	NULL
CLINT1	9685	genome.wustl.edu	37	5	157233011	157233011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014666.2	-1	validated	p.E269*	1.000	867	0%	644	14.8%	-	-	-	-	-	NULL
CLINT1	9685	genome.wustl.edu	37	5	157241238	157241238	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014666.2	-1	validated	p.E103*	1.000	317	0%	196	37.2%	-	-	-	-	-	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
RNF145	153830	genome.wustl.edu	37	5	158601142	158601142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144726.1	-1	provisional	p.A244T	1.000	228	0%	76	32.9%	-	-	benign(0.032)	tolerated(0.1)	neutral(0.288)	NULL
UBLCP1	134510	genome.wustl.edu	37	5	158696002	158696002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145049.3	+1	validated	p.D27N	1.000	281	0%	97	42.3%	-	-	benign(0.209)	tolerated(0.43)	neutral(0.034)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
FABP6	2172	genome.wustl.edu	37	5	159659239	159659239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040442.1	+1	reviewed	p.K117E	1.000	108	0%	43	58.1%	-	-	benign(0.254)	tolerated(0.26)	neutral(0.060)	HMMPfam_Lipocalin,superfamily_Calycin
LOC727947	727947	genome.wustl.edu	37	5	159685312	159685312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001126641.2	+1	model	p.R18Q	0.479	131	0%	95	27.4%	-	-	-	-	-	HMMPfam_UCR_14kD,superfamily_14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
C5orf54	63920	genome.wustl.edu	37	5	159822197	159822197	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022090.3	-1	validated	p.L101	1.000	151	0%	77	42.9%	-	-	-	-	-	NULL
MIR146A	406938	genome.wustl.edu	37	5	159912420	159912420	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385201	+1	known	NULL	1.000	195	0%	113	36.3%	-	-	-	-	-	-
ATP10B	23120	genome.wustl.edu	37	5	160039853	160039853	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.L911	0.999	133	0%	80	20%	-	-	-	-	-	superfamily_HAD-like
ATP10B	23120	genome.wustl.edu	37	5	160047633	160047633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.P713S	0.029	59	0%	46	32.6%	-	-	benign(0.003)	tolerated(0.83)	neutral(0.001)	superfamily_HAD-like
GABRB2	2561	genome.wustl.edu	37	5	160721115	160721115	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021911.2	-1	reviewed	p.I504	0.988	352	0.3%	187	16.6%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRB2	2561	genome.wustl.edu	37	5	160972246	160972246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021911.2	-1	reviewed	p.S75Y	1.000	107	0%	80	31.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA1	2554	genome.wustl.edu	37	5	161309581	161309581	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000806.5	+1	reviewed	p.E193*	1.000	309	0%	163	34.4%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRG2	2566	genome.wustl.edu	37	5	161580182	161580182	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198903.2	+1	reviewed	p.Y452	0.954	606	0.2%	294	33.7%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
CCNG1	900	genome.wustl.edu	37	5	162868320	162868320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004060.3	+1	reviewed	p.E167D	0.995	272	0%	87	29.9%	-	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
HMMR	3161	genome.wustl.edu	37	5	162898429	162898429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142556.1	+1	reviewed	p.E204K	0.000	280	0%	123	36.6%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
HMMR	3161	genome.wustl.edu	37	5	162905753	162905753	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142556.1	+1	reviewed	p.E444	0.932	351	0%	162	22.2%	-	-	-	-	-	NULL
ENSG00000241956	0	genome.wustl.edu	37	5	164028282	164028282	+	RNA	SNP	G	G	A	rs112496644	byFrequency	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486913	+1	known	NULL	1.000	30	0%	25	40%	-	-	-	-	-	-
ODZ2	57451	genome.wustl.edu	37	5	167630735	167630735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.L1149I	1.000	284	0%	157	17.8%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167671440	167671440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.L1837I	1.000	219	0%	119	39.5%	-	-	possibly_damaging(0.724)	tolerated(0.06)	deleterious(0.586)	superfamily_Concanavalin A-like lectins/glucanases
RARS	5917	genome.wustl.edu	37	5	167921646	167921646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002887.3	+1	reviewed	p.E190D	0.958	309	0%	170	34.7%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
RARS	5917	genome.wustl.edu	37	5	167933122	167933122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002887.3	+1	reviewed	p.D385G	1.000	469	0.2%	231	42%	-	-	probably_damaging(1)	tolerated(0.36)	deleterious(0.520)	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
RARS	5917	genome.wustl.edu	37	5	167937680	167937680	+	Nonsense_Mutation	SNP	G	G	T	rs148161788		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002887.3	+1	reviewed	p.E481*	1.000	241	0%	91	27.5%	-	-	-	-	-	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
RARS	5917	genome.wustl.edu	37	5	167944955	167944955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002887.3	+1	reviewed	p.K587N	1.000	186	0%	64	37.5%	-	-	benign(0.02)	tolerated(0.27)	neutral(0.035)	HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
SLIT3	6586	genome.wustl.edu	37	5	168199874	168199874	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.I457	0.785	41	0%	50	54%	-	-	-	-	-	HMMSmart_SM00082,superfamily_RNI-like
CCDC99	54908	genome.wustl.edu	37	5	169015448	169015448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017785.4	+1	validated	p.R10*	0.997	98	0%	55	34.5%	-	-	-	-	-	NULL
CCDC99	54908	genome.wustl.edu	37	5	169021584	169021584	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017785.4	+1	validated	p.R264*	1.000	452	0%	186	35.5%	-	-	-	-	-	NULL
LCP2	3937	genome.wustl.edu	37	5	169720347	169720347	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005565.3	-1	reviewed	p.V36	1.000	350	0%	164	35.4%	-	-	-	-	-	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
KCNIP1	30820	genome.wustl.edu	37	5	170148874	170148874	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034837.1	+1	reviewed	p.F109	0.993	572	0.2%	339	36.9%	-	-	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
RANBP17	64901	genome.wustl.edu	37	5	170346564	170346564	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022897.2	+1	provisional	p.E407D	1.000	432	0%	228	15.4%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_ARM repeat
EFCAB9	285588	genome.wustl.edu	37	5	171627665	171627665	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398186	+1	known	p.F127	0.001	362	0%	170	32.9%	-	-	-	-	-	superfamily_SSF47473
SH3PXD2B	285590	genome.wustl.edu	37	5	171766621	171766621	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017995.2	-1	validated	p.R496	0.007	94	0%	81	37%	-	-	-	-	-	NULL
DUSP1	1843	genome.wustl.edu	37	5	172195924	172195924	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004417.3	-1	reviewed	p.P315	0.002	124	0%	94	39.4%	-	-	-	-	-	NULL
ERGIC1	57222	genome.wustl.edu	37	5	172341857	172341857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326654	+1	known	p.L86F	0.000	94	0%	98	43.9%	-	-	unknown(0)	-	-	NULL
ERGIC1	57222	genome.wustl.edu	37	5	172377713	172377713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031711.2	+1	reviewed	p.I256T	1.000	99	0%	53	28.3%	-	-	benign(0.243)	deleterious(0.01)	neutral(0.430)	HMMPfam_DUF1692
RPL26L1	51121	genome.wustl.edu	37	5	172396461	172396461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016093.2	+1	reviewed	p.L119I	1.000	525	0.2%	256	26.2%	-	-	benign(0.033)	tolerated(0.45)	neutral(0.013)	superfamily_Translation proteins SH3-like domain
C5orf47	133491	genome.wustl.edu	37	5	173416329	173416329	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144954.1	+1	validated	p.F21	1.000	19	5.3%	39	35.9%	-	-	-	-	-	NULL
HMP19	51617	genome.wustl.edu	37	5	173531268	173531268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015980.3	+1	provisional	p.A84V	1.000	557	0%	367	12.3%	-	-	possibly_damaging(0.477)	tolerated(0.25)	neutral(0.195)	HMMPfam_Calcyon
HMP19	51617	genome.wustl.edu	37	5	173534402	173534402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015980.3	+1	provisional	p.S137N	1.000	104	0%	43	34.9%	-	-	possibly_damaging(0.829)	tolerated(0.98)	neutral(0.315)	HMMPfam_Calcyon
LOC100127922	100127922	genome.wustl.edu	37	5	173988906	173988906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342573.1	+1	model	p.L87R	1.000	170	0%	63	27%	-	-	-	-	-	superfamily_Ubiquitin-like
MSX2	4488	genome.wustl.edu	37	5	174156513	174156513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002449.4	+1	reviewed	p.R244I	1.000	71	0%	56	30.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HRH2	3274	genome.wustl.edu	37	5	175110690	175110690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131055.1	+1	reviewed	p.L152M	1.000	191	0%	136	31.6%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_7tm_1,superfamily_SSF81321
CPLX2	10814	genome.wustl.edu	37	5	175307103	175307103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393746	+1	known	p.S135Y	1.000	92	0%	45	42.2%	-	-	unknown(0)	-	-	NULL
THOC3	84321	genome.wustl.edu	37	5	175392019	175392019	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032361.2	-1	validated	p.I188	1.000	707	0%	460	17.2%	-	-	-	-	-	superfamily_WD40_like
ENSG00000251133	0	genome.wustl.edu	37	5	175722293	175722293	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505928	-1	novel	NULL	0.000	83	0%	41	43.9%	-	-	-	-	-	-
HIGD2A	192286	genome.wustl.edu	37	5	175815925	175815925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138820.2	+1	provisional	p.F35L	1.000	150	0%	61	45.9%	-	-	benign(0.02)	tolerated(0.22)	neutral(0.043)	HMMPfam_HIG_1_N
CLTB	1212	genome.wustl.edu	37	5	175819907	175819907	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310418	-1	known	p.E186	0.009	423	0%	292	32.5%	-	-	-	-	-	HMMPfam_Clathrin_lg_ch
FAF2	23197	genome.wustl.edu	37	5	175875441	175875441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014613.2	+1	reviewed	p.Q11H	1.000	59	0%	54	40.7%	-	-	possibly_damaging(0.836)	tolerated(0.07)	deleterious(0.639)	superfamily_UBA_like
FAF2	23197	genome.wustl.edu	37	5	175927107	175927107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014613.2	+1	reviewed	p.S372Y	1.000	190	0%	128	37.5%	-	-	benign(0.186)	deleterious(0.04)	neutral(0.366)	HMMPfam_UBX,superfamily_SSF54236
GPRIN1	114787	genome.wustl.edu	37	5	176025086	176025086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052899.2	-1	validated	p.P584S	0.000	111	0%	66	54.5%	-	-	benign(0.082)	tolerated(0.59)	neutral(0.010)	NULL
GPRIN1	114787	genome.wustl.edu	37	5	176025512	176025512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052899.2	-1	validated	p.R442C	0.000	111	0%	63	36.5%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
UIMC1	51720	genome.wustl.edu	37	5	176370378	176370378	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016290.3	-1	provisional	p.R519*	0.595	410	0%	270	43.3%	-	-	-	-	-	NULL
UIMC1	51720	genome.wustl.edu	37	5	176396116	176396116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016290.3	-1	provisional	p.V214I	0.198	104	0%	113	38.9%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
NSD1	64324	genome.wustl.edu	37	5	176638202	176638202	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.V934	0.827	287	0%	130	29.2%	-	-	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176673767	176673767	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.D1489	0.001	210	0%	89	31.5%	-	-	-	-	-	NULL
RAB24	53917	genome.wustl.edu	37	5	176729583	176729583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031677.2	-1	validated	p.E110K	1.000	221	0%	150	28%	-	-	possibly_damaging(0.773)	tolerated(0.05)	deleterious(0.633)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
DBN1	1627	genome.wustl.edu	37	5	176884701	176884701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080881.2	-1	reviewed	p.L614I	1.000	208	0%	122	34.4%	-	-	possibly_damaging(0.467)	tolerated(0.33)	neutral(0.177)	NULL
DDX41	51428	genome.wustl.edu	37	5	176941793	176941793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016222.2	-1	reviewed	p.R282C	1.000	29	0%	41	41.5%	-	-	possibly_damaging(0.845)	deleterious(0.04)	deleterious(0.673)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM193B	54540	genome.wustl.edu	37	5	176951829	176951829	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019057.3	-1	validated	p.G518	0.530	73	0%	53	34%	-	-	-	-	-	NULL
LOC202181	202181	genome.wustl.edu	37	5	177059654	177059654	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026921.1	-1	predicted	NULL	0.959	246	0%	142	38.7%	-	-	-	-	-	-
RMND5B	64777	genome.wustl.edu	37	5	177574774	177574774	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022762.3	+1	provisional	p.F336	0.086	260	0%	194	42.8%	-	-	-	-	-	superfamily_RING/U-box
HNRNPAB	3182	genome.wustl.edu	37	5	177637225	177637225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031266.2	+1	reviewed	p.D294N	1.000	91	0%	70	38.6%	-	-	unknown(0)	tolerated(0.83)	-	NULL
ZNF354A	6940	genome.wustl.edu	37	5	178139076	178139076	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005649.2	-1	validated	p.I601	0.799	163	0.6%	87	31%	-	-	-	-	-	superfamily_SSF57667
ZNF354A	6940	genome.wustl.edu	37	5	178140480	178140480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005649.2	-1	validated	p.E133D	0.742	232	0%	129	37.2%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ZFP2	80108	genome.wustl.edu	37	5	178359347	178359347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030613.2	+1	provisional	p.R345W	1.000	198	0%	123	28.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000249299	0	genome.wustl.edu	37	5	178359872	178359872	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503510	-1	novel	NULL	0.005	8	0.000	5	0.800	-	-	-	-	-	-
ZNF454	285676	genome.wustl.edu	37	5	178392705	178392705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182594.2	+1	validated	p.H434Y	1.000	249	0%	126	15.1%	-	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GRM6	2916	genome.wustl.edu	37	5	178413548	178413548	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000843.3	-1	reviewed	p.T569	0.266	25	0%	16	50%	-	-	-	-	-	NULL
ZNF879	345462	genome.wustl.edu	37	5	178459520	178459520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136116.1	+1	provisional	p.L191I	0.895	226	0%	96	33.3%	-	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	superfamily_C2H2 and C2HC zinc fingers
ZNF354C	30832	genome.wustl.edu	37	5	178505879	178505879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014594.1	+1	provisional	p.S149L	0.000	228	0%	80	37.5%	-	-	benign(0.304)	tolerated(0.25)	neutral(0.132)	NULL
ADAMTS2	9509	genome.wustl.edu	37	5	178541287	178541287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014244.2	-1	reviewed	p.M1073V	1.000	176	0%	95	44.2%	-	-	benign(0.406)	deleterious(0.01)	deleterious(0.536)	NULL
ENSG00000251657	0	genome.wustl.edu	37	5	178949769	178949769	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506689	-1	known	NULL	0.068	66	0%	51	37.3%	-	-	-	-	-	-
ENSG00000251657	0	genome.wustl.edu	37	5	178950281	178950281	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506689	-1	known	NULL	0.007	99	0%	70	28.6%	-	-	-	-	-	-
CANX	821	genome.wustl.edu	37	5	179155618	179155618	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024649.1	+1	reviewed	p.P584	1.000	155	0%	66	43.9%	-	-	-	-	-	NULL
C5orf45	51149	genome.wustl.edu	37	5	179264449	179264449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016175.3	-1	validated	p.R325Q	0.000	121	0%	77	32.5%	-	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
GFPT2	9945	genome.wustl.edu	37	5	179743823	179743823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005110.2	-1	provisional	p.R365*	0.985	107	0%	67	44.8%	-	-	-	-	-	HMMPfam_SIS,superfamily_SSF53697
OR2Y1	134083	genome.wustl.edu	37	5	180167055	180167055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001657.1	-1	provisional	p.G2R	0.011	70	0%	44	38.6%	-	-	benign(0.003)	tolerated(0.08)	neutral(0.300)	superfamily_SSF81321
BTNL8	79908	genome.wustl.edu	37	5	180338566	180338566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040462.2	+1	validated	p.R209W	0.044	201	0%	104	37.5%	-	-	possibly_damaging(0.727)	deleterious(0)	deleterious(0.709)	HMMSmart_SM00409,superfamily_Immunoglobulin
BTNL9	153579	genome.wustl.edu	37	5	180475237	180475237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152547.4	+1	validated	p.F140L	0.160	42	0%	37	43.2%	-	-	probably_damaging(0.998)	tolerated(0.41)	deleterious(0.489)	HMMSmart_SM00409,superfamily_Immunoglobulin
OR2V1	26693	genome.wustl.edu	37	5	180552119	180552119	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329365	-1	known	p.F62	0.999	553	0%	264	20.5%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
IRF4	3662	genome.wustl.edu	37	6	393188	393188	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002460.2	+1	validated	p.F12	1.000	23	0%	18	33.3%	-	-	-	-	-	NULL
HUS1B	135458	genome.wustl.edu	37	6	656878	656878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148959.3	-1	reviewed	p.V23I	0.000	34	0%	40	37.5%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Hus1
MYLK4	340156	genome.wustl.edu	37	6	2689149	2689149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012418.3	-1	validated	p.V93M	0.999	303	0%	136	35.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
SERPINB1	1992	genome.wustl.edu	37	6	2834048	2834048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030666.2	-1	provisional	p.D312Y	1.000	105	0%	64	17.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
BPHL	670	genome.wustl.edu	37	6	3129411	3129411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004332.2	+1	reviewed	p.E171K	0.790	190	0%	127	33.1%	-	-	benign(0.274)	tolerated(0.59)	neutral(0.034)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
BPHL	670	genome.wustl.edu	37	6	3140712	3140712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004332.2	+1	reviewed	p.D253N	0.966	140	0%	109	44%	-	-	possibly_damaging(0.66)	tolerated(0.64)	neutral(0.236)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
BPHL	670	genome.wustl.edu	37	6	3152779	3152779	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004332.2	+1	reviewed	p.F282	1.000	396	0%	189	35.4%	-	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
TUBB2B	347733	genome.wustl.edu	37	6	3225015	3225015	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178012.4	-1	reviewed	p.F436	0.954	132	0%	109	28.4%	-	-	-	-	-	NULL
TUBB2B	347733	genome.wustl.edu	37	6	3226475	3226475	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178012.4	-1	reviewed	p.L65	0.999	193	0.5%	99	41.4%	-	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
SLC22A23	63027	genome.wustl.edu	37	6	3289998	3289998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015482.1	-1	validated	p.S438L	1.000	254	0%	141	32.6%	-	-	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PSMG4	389362	genome.wustl.edu	37	6	3290103	3290103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454610	+1	known	p.A70S	1.000	219	0%	96	11.5%	-	-	unknown(0)	-	-	NULL
SLC22A23	63027	genome.wustl.edu	37	6	3456238	3456238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015482.1	-1	validated	p.P186T	0.006	28	0%	30	33.3%	-	-	benign(0.133)	tolerated(0.41)	neutral(0.026)	NULL
PRPF4B	8899	genome.wustl.edu	37	6	4057329	4057329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.E881K	1.000	432	0%	216	23.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAM217A	222826	genome.wustl.edu	37	6	4069036	4069036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173563.1	-1	predicted	p.R474Q	0.622	219	0%	133	27.1%	-	-	benign(0.036)	tolerated(0.26)	neutral(0.036)	NULL
ECI2	10455	genome.wustl.edu	37	6	4133943	4133943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380118	-1	known	p.S18Y	0.000	342	0%	212	11.3%	-	-	benign(0.285)	deleterious(0.01)	deleterious(0.493)	NULL
CDYL	9425	genome.wustl.edu	37	6	4735026	4735026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000328908	+1	known	p.S45N	0.000	106	0%	52	25%	-	-	benign(0.067)	tolerated(0.26)	neutral(0.038)	NULL
RREB1	6239	genome.wustl.edu	37	6	7247294	7247294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003699.3	+1	reviewed	p.E1537D	1.000	117	0%	31	29%	-	-	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	NULL
LOC100288790	100288790	genome.wustl.edu	37	6	7290170	7290170	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342613.1	+1	model	p.E74	0.976	190	0%	118	34.7%	-	-	-	-	-	NULL
SSR1	6745	genome.wustl.edu	37	6	7295711	7295711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003144.3	-1	reviewed	p.R236K	1.000	309	0%	144	36.1%	-	-	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	HMMPfam_TRAP_alpha
SSR1	6745	genome.wustl.edu	37	6	7313292	7313292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003144.3	-1	reviewed	p.F21S	0.980	181	0%	68	30.9%	-	-	benign(0.004)	tolerated(0.41)	neutral(0.015)	HMMPfam_TRAP_alpha
CAGE1	285782	genome.wustl.edu	37	6	7365769	7365769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205864.2	-1	validated	p.D546Y	0.008	390	0%	218	36.7%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
DSP	1832	genome.wustl.edu	37	6	7558438	7558438	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.L121	0.000	229	0%	138	42.8%	-	-	-	-	-	superfamily_Spectrin repeat
DSP	1832	genome.wustl.edu	37	6	7568073	7568073	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.R400	0.866	124	0%	82	40.2%	-	-	-	-	-	superfamily_Spectrin repeat
TXNDC5	81567	genome.wustl.edu	37	6	7886244	7886244	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030810.2	-1	reviewed	p.F332	0.993	318	0%	169	33.1%	-	-	-	-	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
GCNT2	2651	genome.wustl.edu	37	6	10586384	10586384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145655.3	+1	reviewed	p.E54D	0.008	394	0%	202	28.7%	-	-	benign(0.001)	tolerated(0.78)	neutral(0.001)	NULL
C6orf52	347744	genome.wustl.edu	37	6	10671715	10671715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145020.1	-1	provisional	p.E145K	0.000	290	0%	180	36.1%	-	-	benign(0.15)	tolerated(0.13)	neutral(0.266)	NULL
PAK1IP1	55003	genome.wustl.edu	37	6	10702687	10702687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017906.2	+1	validated	p.K111N	1.000	256	0%	153	32%	-	-	probably_damaging(0.986)	tolerated(0.13)	deleterious(0.687)	superfamily_WD40_like
MAK	4117	genome.wustl.edu	37	6	10809112	10809112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005906.3	-1	reviewed	p.I141S	1.000	267	0%	152	44.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GCM2	9247	genome.wustl.edu	37	6	10874514	10874514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004752.3	-1	reviewed	p.S412L	0.007	333	0.3%	203	13.8%	-	-	possibly_damaging(0.788)	deleterious(0.03)	deleterious(0.659)	NULL
SYCP2L	221711	genome.wustl.edu	37	6	10907843	10907843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040274.2	+1	validated	p.L249I	0.687	325	0%	141	31.2%	-	-	possibly_damaging(0.68)	tolerated(0.08)	deleterious(0.542)	NULL
SYCP2L	221711	genome.wustl.edu	37	6	10910391	10910391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040274.2	+1	validated	p.R277H	0.000	209	0%	126	28.6%	-	-	possibly_damaging(0.952)	tolerated(0.13)	deleterious(0.648)	NULL
SYCP2L	221711	genome.wustl.edu	37	6	10924816	10924816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040274.2	+1	validated	p.F387S	1.000	295	0%	139	38.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ELOVL2	54898	genome.wustl.edu	37	6	10995351	10995351	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017770.3	-1	validated	p.F132I	1.000	212	0%	114	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ELO
HIVEP1	3096	genome.wustl.edu	37	6	12122396	12122396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.D790Y	1.000	134	0%	82	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12124863	12124863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.S1612L	0.003	241	0%	173	31.2%	-	-	possibly_damaging(0.856)	tolerated(0.2)	neutral(0.380)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12131076	12131076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.R2096C	1.000	387	0%	199	32.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
LOC100289173	100289173	genome.wustl.edu	37	6	12514627	12514627	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342615.1	-1	model	p.S83	1.000	264	0%	107	35.5%	-	-	-	-	-	NULL
TBC1D7	51256	genome.wustl.edu	37	6	13327055	13327055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143964.1	-1	validated	p.K26Q	1.000	302	0%	131	38.2%	-	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	superfamily_Ypt/Rab-GAP domain of gyp1p
DTNBP1	84062	genome.wustl.edu	37	6	15627595	15627595	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032122.3	-1	reviewed	p.E112*	1.000	129	0%	70	11.4%	-	-	-	-	-	NULL
GMPR	2766	genome.wustl.edu	37	6	16247101	16247101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006877.3	+1	reviewed	p.R39Q	1.000	219	0%	116	35.3%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_IMPDH,superfamily_SSF51412
ATXN1	6310	genome.wustl.edu	37	6	16326649	16326649	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000332.3	-1	reviewed	p.F631	0.945	157	0%	124	31.5%	-	-	-	-	-	HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain
ATXN1	6310	genome.wustl.edu	37	6	16327258	16327258	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000332.3	-1	reviewed	p.L428	1.000	88	0%	79	29.1%	-	-	-	-	-	NULL
CAP2	10486	genome.wustl.edu	37	6	17507500	17507500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006366.2	+1	reviewed	p.S134L	0.998	216	0%	113	49.6%	-	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP
NUP153	9972	genome.wustl.edu	37	6	17629522	17629522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005124.2	-1	reviewed	p.E970K	1.000	150	0%	52	26.9%	-	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	NULL
NUP153	9972	genome.wustl.edu	37	6	17669757	17669757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005124.2	-1	reviewed	p.M291I	1.000	260	0%	105	32.4%	-	-	benign(0.056)	tolerated(1)	neutral(0.004)	HMMPfam_Nup153
KIF13A	63971	genome.wustl.edu	37	6	17780964	17780964	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000358380	-1	known	p.N675S	0.695	331	0%	230	37.8%	-	-	-	-	-	NULL
KIF13A	63971	genome.wustl.edu	37	6	17781504	17781504	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000358380	-1	known	p.L585W	0.025	93	0%	81	27.2%	-	-	-	-	-	NULL
KIF13A	63971	genome.wustl.edu	37	6	17788088	17788088	+	Missense_Mutation	SNP	C	C	T	rs192133963	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022113.4	-1	validated	p.V1094I	0.986	832	0%	401	32.7%	-	-	benign(0.106)	tolerated(0.2)	neutral(0.057)	NULL
KDM1B	221656	genome.wustl.edu	37	6	18207661	18207661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153042.3	+1	validated	p.F332L	1.000	314	0%	193	33.2%	-	-	benign(0.428)	tolerated(0.48)	neutral(0.150)	HMMPfam_Amino_oxidase,superfamily_SSF51905
CDKAL1	54901	genome.wustl.edu	37	6	20781494	20781494	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017774.3	+1	reviewed	p.T212	0.494	307	0%	145	37.2%	-	-	-	-	-	PatternScan_UPF0004,HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
CDKAL1	54901	genome.wustl.edu	37	6	20846376	20846376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017774.3	+1	reviewed	p.E237*	1.000	256	0%	91	40.7%	-	-	-	-	-	HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
PRL	5617	genome.wustl.edu	37	6	22294638	22294638	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000948.4	-1	validated	p.F68	0.997	169	0%	93	23.7%	-	-	-	-	-	HMMPfam_Hormone_1,superfamily_4-helical cytokines
HDGFL1	154150	genome.wustl.edu	37	6	22570002	22570002	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138574.2	+1	provisional	p.F66	1.000	161	0%	89	14.6%	-	-	-	-	-	HMMPfam_PWWP,superfamily_SSF63748
DCDC2	51473	genome.wustl.edu	37	6	24302242	24302242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016356.3	-1	reviewed	p.V127M	0.999	254	0%	157	34.4%	-	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	superfamily_Doublecortin (DC)
GPLD1	2822	genome.wustl.edu	37	6	24447196	24447196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001503.2	-1	reviewed	p.V564M	0.965	196	0%	131	42.7%	-	-	possibly_damaging(0.687)	deleterious(0.03)	deleterious(0.610)	superfamily_Integrin alpha N-terminal domain
GPLD1	2822	genome.wustl.edu	37	6	24486320	24486320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001503.2	-1	reviewed	p.R46C	0.408	256	0%	108	11.1%	-	-	possibly_damaging(0.861)	tolerated(0.17)	neutral(0.392)	NULL
KIAA0319	9856	genome.wustl.edu	37	6	24563629	24563629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014809.3	-1	reviewed	p.S850L	0.910	95	0%	50	36%	-	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
ACOT13	55856	genome.wustl.edu	37	6	24698281	24698281	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018473.3	+1	reviewed	p.V84	0.606	142	0%	61	44.3%	-	-	-	-	-	HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase
ACOT13	55856	genome.wustl.edu	37	6	24701815	24701815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018473.3	+1	reviewed	p.G132V	1.000	477	0%	174	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thioesterase/thiol ester dehydrase-isomerase
FAM65B	9750	genome.wustl.edu	37	6	24806656	24806656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014722.2	-1	validated	p.R1051Q	1.000	350	0%	185	33%	-	-	probably_damaging(0.974)	tolerated(0.23)	neutral(0.457)	NULL
FAM65B	9750	genome.wustl.edu	37	6	24848314	24848314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014722.2	-1	validated	p.R339I	1.000	320	0.3%	163	31.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25285074	25285074	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017640.5	+1	validated	p.K25N	1.000	463	0%	191	40.8%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25515974	25515974	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017640.5	+1	validated	p.G568	1.000	134	0.7%	67	34.3%	-	-	-	-	-	superfamily_SSF52047
LRRC16A	55604	genome.wustl.edu	37	6	25529057	25529057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017640.5	+1	validated	p.R668I	0.976	132	0%	85	38.8%	-	-	probably_damaging(0.984)	tolerated(0.38)	neutral(0.448)	superfamily_SSF52047
SLC17A4	10050	genome.wustl.edu	37	6	25771173	25771173	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005495.2	+1	validated	p.F213	0.010	710	0.1%	374	34%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC17A4	10050	genome.wustl.edu	37	6	25773779	25773779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005495.2	+1	validated	p.M288I	0.979	684	0.1%	340	34.7%	-	-	possibly_damaging(0.827)	tolerated(0.27)	neutral(0.348)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC17A4	10050	genome.wustl.edu	37	6	25777057	25777057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005495.2	+1	validated	p.V380M	0.000	186	0%	139	36%	-	-	possibly_damaging(0.95)	tolerated(0.07)	deleterious(0.713)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
TRIM38	10475	genome.wustl.edu	37	6	25967011	25967011	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006355.2	+1	reviewed	p.T87	0.691	108	0%	62	38.7%	-	-	-	-	-	superfamily_SSF57850
HIST1H3E	8353	genome.wustl.edu	37	6	26225776	26225776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003532.2	+1	reviewed	p.R132C	1.000	236	0%	132	30.3%	-	-	probably_damaging(1)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
BTN2A2	10385	genome.wustl.edu	37	6	26390357	26390357	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006995.3	+1	reviewed	p.I283	0.012	343	0.3%	171	36.3%	-	-	-	-	-	NULL
BTN2A2	10385	genome.wustl.edu	37	6	26392964	26392964	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006995.3	+1	reviewed	p.G447	0.004	414	0%	229	39.7%	-	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
BTN3A1	11119	genome.wustl.edu	37	6	26405834	26405834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007048.5	+1	validated	p.R15C	0.000	582	0%	348	22.7%	-	-	probably_damaging(0.992)	tolerated(0.18)	deleterious(0.504)	NULL
BTN1A1	696	genome.wustl.edu	37	6	26507021	26507021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001732.2	+1	validated	p.E274K	0.776	241	0%	132	28.8%	-	-	benign(0.017)	tolerated(0.65)	neutral(0.004)	NULL
BTN1A1	696	genome.wustl.edu	37	6	26508937	26508937	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001732.2	+1	validated	p.I372	0.000	279	0%	125	34.4%	-	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
POM121L2	94026	genome.wustl.edu	37	6	27279009	27279009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444565	-1	known	p.S314Y	0.004	228	0%	132	31.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
POM121L2	94026	genome.wustl.edu	37	6	27279330	27279330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444565	-1	known	p.S207Y	0.001	185	0%	110	36.4%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
POM121L2	94026	genome.wustl.edu	37	6	27279826	27279826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444565	-1	known	p.Q42K	0.434	102	0%	72	19.4%	-	-	possibly_damaging(0.895)	tolerated(0.24)	neutral(0.390)	NULL
ZNF391	346157	genome.wustl.edu	37	6	27369123	27369123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076781.1	+1	validated	p.R325I	1.000	167	0%	117	41%	-	-	possibly_damaging(0.915)	deleterious(0.02)	deleterious(0.750)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HIST1H4J	8363	genome.wustl.edu	37	6	27792125	27792125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021968.3	+1	reviewed	p.E75K	1.000	224	0%	156	25.6%	-	-	possibly_damaging(0.71)	deleterious(0)	deleterious(0.701)	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
OR2B2	81697	genome.wustl.edu	37	6	27879394	27879394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033057.2	-1	validated	p.R235Q	0.000	299	0%	167	38.3%	-	-	benign(0.018)	tolerated(0.35)	neutral(0.021)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2B6	26212	genome.wustl.edu	37	6	27925550	27925550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012367.1	+1	provisional	p.L178I	0.971	261	0%	227	30%	-	-	benign(0.047)	tolerated(0.19)	neutral(0.053)	HMMPfam_7tm_1,superfamily_SSF81321
OR2B6	26212	genome.wustl.edu	37	6	27925878	27925878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012367.1	+1	provisional	p.P287L	1.000	230	0%	121	48.8%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF192P1	651302	genome.wustl.edu	37	6	28134643	28134643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145129.1	+1	provisional	p.N103D	0.001	228	0%	146	34.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF193	7746	genome.wustl.edu	37	6	28200760	28200760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006299.3	+1	provisional	p.R330I	0.995	202	0%	124	37.9%	-	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZKSCAN4	387032	genome.wustl.edu	37	6	28212955	28212955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019110.3	-1	provisional	p.R526Q	0.001	363	0%	231	35.9%	-	-	probably_damaging(0.999)	tolerated(0.6)	deleterious(0.495)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF187	7741	genome.wustl.edu	37	6	28244658	28244658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152736.4	+1	validated	p.D274N	0.035	340	0%	157	33.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PGBD1	84547	genome.wustl.edu	37	6	28268794	28268794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032507.3	+1	reviewed	p.K388R	0.847	115	0%	56	35.7%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
ZSCAN23	222696	genome.wustl.edu	37	6	28402354	28402354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012455.1	-1	validated	p.R353I	1.000	290	0%	186	44.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZSCAN23	222696	genome.wustl.edu	37	6	28403902	28403902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012455.1	-1	validated	p.R48S	0.688	93	0%	76	30.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SCAN,HMMSmart_SCAN
SCAND3	114821	genome.wustl.edu	37	6	28540488	28540488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.R1060W	0.999	133	0%	53	32.1%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28541284	28541284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.F794L	1.000	334	0%	176	11.9%	-	-	benign(0.227)	tolerated(0.06)	neutral(0.345)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28543486	28543486	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.A332	1.000	636	0%	382	33.5%	-	-	-	-	-	NULL
TRIM27	5987	genome.wustl.edu	37	6	28887993	28887993	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006510.4	-1	reviewed	p.K181	1.000	263	0%	162	32.1%	-	-	-	-	-	NULL
OR2J1	442185	genome.wustl.edu	37	6	29069518	29069518	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377171	+1	known	p.N267H	0.007	187	0%	131	43.5%	-	-	benign(0.355)	tolerated(0.52)	neutral(0.121)	HMMPfam_7tm_1,superfamily_SSF81321
OR2J1	442185	genome.wustl.edu	37	6	29069522	29069522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377171	+1	known	p.S268Y	0.000	194	0%	133	30.8%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_SSF81321
MAS1L	116511	genome.wustl.edu	37	6	29455057	29455057	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052967.1	-1	provisional	p.K208T	0.000	70	0%	33	42.4%	-	-	benign(0.019)	tolerated(0.3)	neutral(0.030)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C6orf136	221545	genome.wustl.edu	37	6	30619148	30619148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109938.2	+1	validated	p.E223D	1.000	64	0%	39	48.7%	-	-	possibly_damaging(0.61)	tolerated(0.31)	neutral(0.238)	HMMPfam_DUF2358
MDC1	9656	genome.wustl.edu	37	6	30671416	30671416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014641.2	-1	reviewed	p.E1848D	0.012	476	0%	247	34.4%	-	-	possibly_damaging(0.649)	tolerated(0.21)	neutral(0.272)	NULL
MDC1	9656	genome.wustl.edu	37	6	30673856	30673856	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014641.2	-1	reviewed	p.D1035A	0.321	120	0%	68	33.8%	-	-	probably_damaging(0.98)	tolerated(0.23)	neutral(0.465)	NULL
GTF2H4	2968	genome.wustl.edu	37	6	30879209	30879209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001517.4	+1	validated	p.S225N	1.000	645	0%	311	37.3%	-	-	benign(0.039)	tolerated(0.2)	neutral(0.051)	HMMPfam_Tfb2
DPCR1	135656	genome.wustl.edu	37	6	30916476	30916476	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000462446	+1	known	p.E79*	0.159	266	0%	112	34.8%	-	-	-	-	-	NULL
DPCR1	135656	genome.wustl.edu	37	6	30917342	30917342	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000462446	+1	known	p.R367	0.004	904	0%	354	35%	-	-	-	-	-	NULL
DPCR1	135656	genome.wustl.edu	37	6	30919440	30919440	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000462446	+1	known	p.E1067*	0.001	758	0%	364	36%	-	-	-	-	-	NULL
DDX39B	7919	genome.wustl.edu	37	6	31498931	31498931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004640.5	-1	reviewed	p.L341I	1.000	146	0%	86	20.9%	-	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
BAG6	7917	genome.wustl.edu	37	6	31611898	31611898	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453833	-1	known	p.A142S	0.994	97	0%	84	41.7%	-	-	-	-	-	NULL
MSH5	4439	genome.wustl.edu	37	6	31711996	31711996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025259.5	+1	reviewed	p.F206L	1.000	276	0%	158	38.6%	-	-	possibly_damaging(0.905)	tolerated(0.36)	neutral(0.380)	NULL
VARS	7407	genome.wustl.edu	37	6	31752080	31752080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006295.2	-1	reviewed	p.D528N	0.060	165	0%	116	12.1%	-	-	benign(0.003)	tolerated(0.13)	neutral(0.253)	HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase
HSPA1L	3305	genome.wustl.edu	37	6	31778785	31778785	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424494	-1	known	e2+2	1.000	185	0%	148	34.5%	-	-	-	-	-	-
TNXB	7148	genome.wustl.edu	37	6	32010042	32010042	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	e40+1	1.000	196	0%	168	29.8%	-	-	-	-	-	-
TNXB	7148	genome.wustl.edu	37	6	32021415	32021415	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	p.L2845	0.528	30	0%	14	64.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ATF6B	1388	genome.wustl.edu	37	6	32093941	32093941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004381.4	-1	reviewed	p.F144C	1.000	162	0%	112	35.7%	-	-	possibly_damaging(0.604)	deleterious(0.02)	deleterious(0.593)	NULL
HLA-DOB	3112	genome.wustl.edu	37	6	32782983	32782983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002120.3	-1	reviewed	p.D67N	0.983	184	0%	132	42.4%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_MHC_II_beta,superfamily_MHC antigen-recognition domain
TAP1	6890	genome.wustl.edu	37	6	32818213	32818213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000593.5	-1	reviewed	p.R438*	0.949	200	0%	130	30.8%	-	-	-	-	-	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
COL11A2	1302	genome.wustl.edu	37	6	33141152	33141152	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080680.2	-1	reviewed	p.P903	0.468	71	0%	29	65.5%	-	-	-	-	-	HMMPfam_Collagen
WDR46	9277	genome.wustl.edu	37	6	33256713	33256713	+	Missense_Mutation	SNP	C	C	A	rs143331167	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005452.5	-1	validated	p.K49N	0.995	171	0%	82	46.3%	-	-	benign(0.003)	tolerated(0.3)	neutral(0.029)	NULL
DAXX	1616	genome.wustl.edu	37	6	33287597	33287597	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141970.1	-1	reviewed	p.L512	0.001	362	0%	233	38.2%	-	-	-	-	-	HMMPfam_Daxx
ITPR3	3710	genome.wustl.edu	37	6	33632853	33632853	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.E424	0.960	53	0%	49	30.6%	-	-	-	-	-	HMMPfam_MIR,superfamily_MIR
ITPR3	3710	genome.wustl.edu	37	6	33656126	33656126	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.D2162	0.999	97	0%	90	40%	-	-	-	-	-	NULL
UHRF1BP1	54887	genome.wustl.edu	37	6	34826807	34826807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017754.3	+1	validated	p.D892N	0.078	70	0%	56	41.1%	-	-	benign(0.004)	tolerated(0.44)	neutral(0.013)	NULL
UHRF1BP1	54887	genome.wustl.edu	37	6	34826938	34826938	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017754.3	+1	validated	p.E935D	0.000	70	0%	34	26.5%	-	-	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
TCP11	6954	genome.wustl.edu	37	6	35089949	35089949	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093728.1	-1	validated	p.R188*	0.997	248	0.4%	128	25%	-	-	-	-	-	HMMPfam_Tcp11
SCUBE3	222663	genome.wustl.edu	37	6	35210542	35210542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152753.2	+1	provisional	p.A560T	0.995	107	0%	77	36.4%	-	-	benign(0.018)	tolerated(0.43)	neutral(0.014)	NULL
SCUBE3	222663	genome.wustl.edu	37	6	35213126	35213126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152753.2	+1	provisional	p.K841N	1.000	237	0%	134	35.8%	-	-	possibly_damaging(0.805)	tolerated(0.08)	deleterious(0.603)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZNF76	7629	genome.wustl.edu	37	6	35262285	35262285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003427.3	+1	provisional	p.S516Y	1.000	297	0%	263	39.9%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
FANCE	2178	genome.wustl.edu	37	6	35423874	35423874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021922.2	+1	reviewed	p.R200H	0.995	108	0%	36	44.4%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FANCE	2178	genome.wustl.edu	37	6	35424044	35424044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021922.2	+1	reviewed	p.M257V	0.000	186	0%	90	13.3%	-	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
ARMC12	221481	genome.wustl.edu	37	6	35705102	35705102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145028.3	+1	predicted	p.E73K	0.005	133	0%	56	33.9%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
ARMC12	221481	genome.wustl.edu	37	6	35715059	35715059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145028.3	+1	predicted	p.E183K	0.996	377	0%	180	29.4%	-	-	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMPfam_DUF634,superfamily_ARM-type_fold
SLC26A8	116369	genome.wustl.edu	37	6	35911843	35911843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052961.2	-1	reviewed	p.S916Y	0.000	482	0.2%	350	35.4%	-	-	benign(0.067)	deleterious(0)	neutral(0.449)	NULL
BRPF3	27154	genome.wustl.edu	37	6	36168265	36168265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015695.2	+1	validated	p.D56N	1.000	165	0%	85	20%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_EPL1
BRPF3	27154	genome.wustl.edu	37	6	36168372	36168372	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441123	+1	known	p.E64*	0.999	134	0%	76	17.1%	-	-	benign(0.104)	tolerated(0.41)	neutral(0.023)	HMMPfam_EPL1
BRPF3	27154	genome.wustl.edu	37	6	36169341	36169341	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441123	+1	known	p.G387*	0.990	413	0%	166	13.3%	-	-	benign(0.328)	tolerated(0.13)	neutral(0.355)	NULL
C6orf222	389384	genome.wustl.edu	37	6	36291092	36291092	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010903.4	-1	validated	p.R483	0.010	148	0%	103	31.1%	-	-	-	-	-	NULL
CPNE5	57699	genome.wustl.edu	37	6	36713256	36713256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020939.1	-1	reviewed	p.D413N	1.000	38	0%	22	31.8%	-	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
FGD2	221472	genome.wustl.edu	37	6	36993601	36993601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173558.3	+1	validated	p.E498K	0.002	116	0%	75	33.3%	-	-	benign(0.008)	tolerated(0.42)	neutral(0.014)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
PIM1	5292	genome.wustl.edu	37	6	37140852	37140852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002648.3	+1	validated	p.I230V	1.000	336	0%	216	38.9%	-	-	benign(0)	tolerated(1)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RNF8	9025	genome.wustl.edu	37	6	37336963	37336963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003958.3	+1	reviewed	p.K315T	1.000	146	0%	79	40.5%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
MDGA1	266727	genome.wustl.edu	37	6	37619814	37619814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153487.3	-1	validated	p.V429I	0.811	45	0%	29	31%	-	-	benign(0.002)	tolerated(0.64)	neutral(0.003)	HMMSmart_SM00409,superfamily_Immunoglobulin
DNAH8	1769	genome.wustl.edu	37	6	38705029	38705029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.D100Y	1.000	155	0%	65	33.8%	-	-	benign(0.223)	deleterious(0.01)	neutral(0.428)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38743579	38743579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.S388Y	1.000	141	0%	62	32.3%	-	-	benign(0.054)	tolerated(1)	neutral(0.004)	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38750816	38750816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.A549T	1.000	219	0%	113	23%	-	-	benign(0.003)	tolerated(0.33)	neutral(0.024)	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38795982	38795982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.R1152I	1.000	383	0%	194	32.5%	-	-	possibly_damaging(0.609)	deleterious(0.01)	deleterious(0.617)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38821010	38821010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.D1657N	0.934	235	0%	111	34.2%	-	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38828262	38828262	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.D1779	0.975	249	0%	120	30%	-	-	-	-	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38831750	38831750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.A1921S	1.000	294	0%	155	43.2%	-	-	possibly_damaging(0.728)	tolerated(0.05)	deleterious(0.611)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38863867	38863867	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.E2719*	0.997	336	0%	191	39.8%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38879252	38879252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.R3033Q	1.000	129	0%	56	21.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38897426	38897426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.S3536Y	1.000	91	0%	51	39.2%	-	-	possibly_damaging(0.903)	deleterious(0.03)	deleterious(0.722)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38913287	38913287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.R3801C	0.533	197	0%	109	41.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Dynein_heavy
DNAH8	1769	genome.wustl.edu	37	6	38939413	38939413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.R3949Q	1.000	216	1.4%	123	20.3%	-	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_Dynein_heavy
DNAH8	1769	genome.wustl.edu	37	6	38957866	38957866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.D4161N	1.000	401	0%	191	32.5%	-	-	benign(0.01)	tolerated(0.2)	neutral(0.050)	HMMPfam_Dynein_heavy
DNAH8	1769	genome.wustl.edu	37	6	38980042	38980042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.L4258I	1.000	289	0%	159	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
LOC100131031	100131031	genome.wustl.edu	37	6	39080157	39080157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725253.2	+1	model	p.F215L	0.513	64	0%	28	35.7%	-	-	-	-	-	NULL
KCNK16	83795	genome.wustl.edu	37	6	39282972	39282972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135105.1	-1	reviewed	p.F299L	0.000	241	0%	140	42.1%	-	-	unknown(0)	-	-	NULL
DAAM2	23500	genome.wustl.edu	37	6	39839297	39839297	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015345.2	+1	validated	p.F331	0.998	401	0%	225	30.2%	-	-	-	-	-	HMMPfam_Drf_FH3
MOCS1	4337	genome.wustl.edu	37	6	39874678	39874678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000340692	-1	known	p.D456N	0.006	76	0%	54	42.6%	-	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	NULL
MOCS1	4337	genome.wustl.edu	37	6	39874879	39874879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000340692	-1	known	p.F389L	0.002	61	0%	30	26.7%	-	-	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
MOCS1	4337	genome.wustl.edu	37	6	39895121	39895121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001075098.3	-1	reviewed	p.G66D	1.000	84	0%	48	27.1%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	superfamily_SSF102114
APOBEC2	10930	genome.wustl.edu	37	6	41029364	41029364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006789.3	+1	validated	p.K143N	1.000	166	0%	81	28.4%	-	-	probably_damaging(0.99)	tolerated(0.19)	deleterious(0.491)	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like
NFYA	4800	genome.wustl.edu	37	6	41060780	41060780	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002505.4	+1	reviewed	p.R282*	0.992	303	0%	119	21.8%	-	-	-	-	-	HMMPfam_CBFB_NFYA,HMMSmart_SM00521,PatternScan_NFYA_HAP2_1
PRICKLE4	29964	genome.wustl.edu	37	6	41753105	41753105	+	Missense_Mutation	SNP	G	G	A	rs34342271	byCluster;byFrequency	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013397.5	+1	validated	p.G137R	0.992	83	0%	46	41.3%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1
PRICKLE4	29964	genome.wustl.edu	37	6	41753916	41753916	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013397.5	+1	validated	p.E211	1.000	26	0%	24	29.2%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PRICKLE4	29964	genome.wustl.edu	37	6	41754642	41754642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013397.5	+1	validated	p.E310D	0.030	93	0%	58	37.9%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
TOMM6	100188893	genome.wustl.edu	37	6	41756970	41756970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134493.1	+1	validated	p.R43S	1.000	324	0%	163	32.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MED20	9477	genome.wustl.edu	37	6	41877243	41877243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004275.3	-1	validated	p.M63V	1.000	111	0%	105	29.5%	-	-	benign(0.005)	tolerated(0.92)	-	HMMPfam_TATA_RF
C6orf132	647024	genome.wustl.edu	37	6	42072700	42072700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341865	-1	known	p.E984K	0.980	95	0%	64	46.9%	-	-	possibly_damaging(0.915)	deleterious(0.04)	deleterious(0.716)	NULL
KIAA0240	23506	genome.wustl.edu	37	6	42832694	42832694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015349.1	+1	validated	p.T917M	0.000	101	0%	73	50.7%	-	-	benign(0.086)	deleterious(0.02)	neutral(0.390)	NULL
CNPY3	10695	genome.wustl.edu	37	6	42903328	42903328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006586.3	+1	validated	p.E98K	1.000	136	0%	102	53.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CUL7	9820	genome.wustl.edu	37	6	43017716	43017716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014780.4	-1	reviewed	p.E518D	1.000	86	0%	69	40.6%	-	-	benign(0.004)	tolerated(0.27)	neutral(0.034)	NULL
CUL9	23113	genome.wustl.edu	37	6	43170500	43170500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015089.2	+1	validated	p.A1232T	1.000	114	0%	62	30.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_APC10,superfamily_Galactose-binding domain-like
CUL9	23113	genome.wustl.edu	37	6	43181588	43181588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015089.2	+1	validated	p.L1876I	1.000	164	0%	83	38.6%	-	-	possibly_damaging(0.556)	tolerated(1)	neutral(0.190)	"superfamily_""Winged helix"" DNA-binding domain"
CUL9	23113	genome.wustl.edu	37	6	43189422	43189422	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015089.2	+1	validated	e34-1	1.000	65	0%	46	21.7%	-	-	-	-	-	-
TTBK1	84630	genome.wustl.edu	37	6	43251032	43251032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032538.1	+1	validated	p.E852K	1.000	18	0%	11	36.4%	-	-	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
CRIP3	401262	genome.wustl.edu	37	6	43273851	43273851	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416431	-1	known	p.P93S	0.984	71	0%	66	31.8%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ZNF318	24149	genome.wustl.edu	37	6	43305470	43305470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014345.2	-1	validated	p.R2089Q	0.065	180	0%	118	34.7%	-	-	benign(0.001)	tolerated(0.81)	neutral(0.001)	NULL
ZNF318	24149	genome.wustl.edu	37	6	43323467	43323467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014345.2	-1	validated	p.E535D	1.000	157	0%	94	10.6%	-	-	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	NULL
CAPN11	11131	genome.wustl.edu	37	6	44140676	44140676	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007058.3	+1	reviewed	e6-1	1.000	71	0%	39	25.6%	-	-	-	-	-	-
SLC29A1	2030	genome.wustl.edu	37	6	44199193	44199193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078174.1	+1	reviewed	p.K287E	0.449	209	0%	120	33.3%	-	-	benign(0.362)	deleterious(0.02)	deleterious(0.498)	HMMPfam_Nucleoside_tran
HSP90AB1	3326	genome.wustl.edu	37	6	44217300	44217300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007355.2	+1	provisional	p.A112S	1.000	264	0%	141	31.2%	-	-	benign(0.005)	tolerated(0.09)	neutral(0.296)	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
HSP90AB1	3326	genome.wustl.edu	37	6	44220854	44220854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007355.2	+1	provisional	p.M602V	1.000	71	0%	67	41.8%	-	-	possibly_damaging(0.871)	deleterious(0)	deleterious(0.783)	HMMPfam_HSP90,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)
SLC35B2	347734	genome.wustl.edu	37	6	44222477	44222477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178148.2	-1	validated	p.A422D	0.442	223	0%	127	34.6%	-	-	possibly_damaging(0.462)	tolerated(0.18)	neutral(0.207)	NULL
TCTE1	202500	genome.wustl.edu	37	6	44255296	44255296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182539.3	-1	validated	p.R89S	0.025	113	0%	82	39%	-	-	benign(0.069)	tolerated(0.72)	neutral(0.006)	NULL
AARS2	57505	genome.wustl.edu	37	6	44269164	44269164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020745.2	-1	validated	p.S879L	0.000	86	1.2%	51	31.4%	-	-	benign(0.032)	tolerated(0.21)	neutral(0.045)	NULL
ENPP4	22875	genome.wustl.edu	37	6	46107510	46107510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014936.4	+1	validated	p.N64H	0.999	139	0%	69	56.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP5	59084	genome.wustl.edu	37	6	46133267	46133267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021572.4	-1	validated	p.H288R	0.001	388	0%	232	37.5%	-	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
CYP39A1	51302	genome.wustl.edu	37	6	46555811	46555811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016593.3	-1	reviewed	p.R374I	1.000	166	0%	55	49.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_p450,superfamily_Cytochrome P450
TDRD6	221400	genome.wustl.edu	37	6	46656967	46656967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.R368*	0.992	236	0.4%	135	28.9%	-	-	-	-	-	HMMPfam_TUDOR
TDRD6	221400	genome.wustl.edu	37	6	46657349	46657349	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.F495C	1.000	190	0%	95	38.9%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_TUDOR
TDRD6	221400	genome.wustl.edu	37	6	46658530	46658530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.Q889K	0.999	104	0%	45	31.1%	-	-	benign(0.313)	tolerated(0.08)	neutral(0.397)	NULL
TDRD6	221400	genome.wustl.edu	37	6	46661338	46661338	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.E1825*	0.016	65	1.5%	36	41.7%	-	-	-	-	-	NULL
PLA2G7	7941	genome.wustl.edu	37	6	46690525	46690525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005084.3	-1	reviewed	p.S35*	0.782	227	0%	106	36.8%	-	-	-	-	-	NULL
MEP1A	4224	genome.wustl.edu	37	6	46787435	46787435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005588.2	+1	validated	p.L184I	0.002	554	0%	299	34.4%	-	-	benign(0.004)	tolerated(0.62)	neutral(0.004)	HMMPfam_Astacin,HMMSmart_ZnMc,superfamily_SSF55486
MEP1A	4224	genome.wustl.edu	37	6	46793216	46793216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005588.2	+1	validated	p.R255Q	1.000	271	0%	136	30.9%	-	-	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_Astacin,superfamily_SSF55486
GPR116	221395	genome.wustl.edu	37	6	46826491	46826491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098518.1	-1	validated	p.R1050H	1.000	207	0%	98	40.8%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
GPR116	221395	genome.wustl.edu	37	6	46849336	46849336	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098518.1	-1	validated	e7-2	0.992	545	0%	349	35%	-	-	-	-	-	-
GPR116	221395	genome.wustl.edu	37	6	46874497	46874497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098518.1	-1	validated	p.M1I	1.000	516	0%	212	38.2%	-	-	possibly_damaging(0.459)	deleterious(0)	deleterious(0.595)	NULL
GPR110	266977	genome.wustl.edu	37	6	46979880	46979880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153840.2	-1	validated	p.V327M	0.923	394	0%	219	37.4%	-	-	benign(0.101)	tolerated(0.08)	neutral(0.307)	NULL
CD2AP	23607	genome.wustl.edu	37	6	47547151	47547151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012120.2	+1	reviewed	p.E312K	1.000	526	0%	225	34.7%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
GPR115	221393	genome.wustl.edu	37	6	47680160	47680160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153838.3	+1	validated	p.R123Q	0.016	201	0.5%	129	38.8%	-	-	benign(0.002)	tolerated(0.69)	neutral(0.002)	NULL
CRISP1	167	genome.wustl.edu	37	6	49819810	49819810	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131.2	-1	reviewed	p.L33	0.000	482	0%	231	32.9%	-	-	-	-	-	superfamily_PR-1-like
DEFB114	245928	genome.wustl.edu	37	6	49928035	49928035	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037499.1	-1	provisional	p.E60	0.000	320	0%	127	33.1%	-	-	-	-	-	NULL
TFAP2B	7021	genome.wustl.edu	37	6	50810937	50810937	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003221.3	+1	reviewed	p.F405	1.000	83	0%	28	28.6%	-	-	-	-	-	HMMPfam_TF_AP-2
PKHD1	5314	genome.wustl.edu	37	6	51523872	51523872	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.N3684	0.004	333	0%	176	38.6%	-	-	-	-	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51612704	51612704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.R3237I	0.953	183	0%	125	34.4%	-	-	possibly_damaging(0.444)	tolerated(0.08)	neutral(0.445)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51656137	51656137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.F2779L	0.008	275	0%	158	34.2%	-	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_G8
PKHD1	5314	genome.wustl.edu	37	6	51748003	51748003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.R2413H	0.988	178	0%	72	41.7%	-	-	benign(0)	tolerated(0.58)	neutral(0.005)	HMMSmart_SM00710,superfamily_Pectin lyase-like
PKHD1	5314	genome.wustl.edu	37	6	51771023	51771023	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.A2266	0.391	120	0%	57	33.3%	-	-	-	-	-	HMMSmart_SM00710,superfamily_Pectin lyase-like
PKHD1	5314	genome.wustl.edu	37	6	51875241	51875241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.D1873Y	1.000	374	0%	209	34.4%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51938332	51938332	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.L152	0.928	428	0%	212	34.9%	-	-	-	-	-	superfamily_E set domains
EFHC1	114327	genome.wustl.edu	37	6	52319011	52319011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018100.3	+1	reviewed	p.R281L	1.000	317	0.3%	202	31.7%	-	-	possibly_damaging(0.683)	tolerated(0.11)	deleterious(0.515)	HMMSmart_SM00676,HMMPfam_DUF1126
EFHC1	114327	genome.wustl.edu	37	6	52357122	52357122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018100.3	+1	reviewed	p.R636C	0.811	281	0%	148	37.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_EF-hand
GSTA2	2939	genome.wustl.edu	37	6	52617688	52617688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000846.4	-1	reviewed	p.E126D	0.318	736	0%	378	37%	-	-	benign(0)	tolerated(1)	-	HMMPfam_GST_C,superfamily_GST_C_like
ICK	22858	genome.wustl.edu	37	6	52905983	52905983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014920.3	-1	reviewed	p.V18I	1.000	156	0%	91	29.7%	-	-	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
GCM1	8521	genome.wustl.edu	37	6	52993390	52993390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003643.3	-1	reviewed	p.A309S	0.000	281	0%	129	31.8%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
ELOVL5	60481	genome.wustl.edu	37	6	53139965	53139965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021814.3	-1	provisional	p.T140M	1.000	418	0%	208	33.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ELO
KLHL31	401265	genome.wustl.edu	37	6	53516539	53516539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003760.4	-1	validated	p.S588R	0.996	111	0%	93	23.7%	-	-	benign(0.016)	tolerated(0.09)	neutral(0.297)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL31	401265	genome.wustl.edu	37	6	53519485	53519485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003760.4	-1	validated	p.R196W	1.000	301	0%	165	19.4%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_BACK
KLHL31	401265	genome.wustl.edu	37	6	53519561	53519561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003760.4	-1	validated	p.E170D	1.000	214	0%	115	28.7%	-	-	possibly_damaging(0.923)	tolerated(1)	neutral(0.372)	NULL
LRRC1	55227	genome.wustl.edu	37	6	53761629	53761629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018214.4	+1	validated	p.S169F	1.000	212	0%	60	28.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
LRRC1	55227	genome.wustl.edu	37	6	53778654	53778654	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018214.4	+1	validated	p.I331	0.948	163	0%	90	31.1%	-	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
MLIP	90523	genome.wustl.edu	37	6	53883848	53883848	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138569.2	+1	validated	p.K8Q	0.998	279	0%	96	36.5%	-	-	probably_damaging(0.997)	tolerated(0.15)	deleterious(0.707)	NULL
MLIP	90523	genome.wustl.edu	37	6	53989402	53989402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138569.2	+1	validated	p.Q117H	0.993	204	0%	88	36.4%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
MLIP	90523	genome.wustl.edu	37	6	54067005	54067005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138569.2	+1	validated	p.D363Y	0.995	167	0%	75	41.3%	-	-	unknown(0)	deleterious(0)	-	NULL
GFRAL	389400	genome.wustl.edu	37	6	55266641	55266641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207410.2	+1	validated	p.G392V	0.832	341	0%	163	35%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HMGCLL1	54511	genome.wustl.edu	37	6	55364089	55364089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019036.2	-1	validated	p.S214Y	1.000	319	0%	129	31%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMGL-like,superfamily_Aldolase
BMP5	653	genome.wustl.edu	37	6	55638897	55638897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021073.2	-1	reviewed	p.R326H	1.000	574	0.2%	279	40.9%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
COL21A1	81578	genome.wustl.edu	37	6	55924978	55924978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030820.3	-1	reviewed	p.N816H	0.998	147	0%	76	32.9%	-	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
DST	667	genome.wustl.edu	37	6	56325025	56325025	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.R5053*	0.997	183	0%	109	36.7%	-	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56368827	56368827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.E3889K	1.000	287	0%	144	36.1%	-	-	possibly_damaging(0.773)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56392430	56392430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.A3305V	0.997	482	0%	305	37.7%	-	-	possibly_damaging(0.86)	-	-	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56422302	56422302	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.E2196*	1.000	433	0%	251	38.2%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56434761	56434761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.L1968I	0.998	343	0%	153	35.9%	-	-	probably_damaging(0.995)	-	-	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56438544	56438544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.S1767Y	0.997	305	0%	187	39%	-	-	probably_damaging(0.991)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56458602	56458602	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.T1572	0.130	235	0%	139	38.1%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56496779	56496779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.R752W	0.968	354	0%	207	26.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56564524	56564524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370769	-1	known	p.R114I	1.000	258	0%	152	40.1%	-	-	benign(0.261)	deleterious(0)	deleterious(0.472)	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
BEND6	221336	genome.wustl.edu	37	6	56846621	56846621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152731.2	+1	validated	p.V5M	0.991	308	0%	149	38.3%	-	-	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
ZNF451	26036	genome.wustl.edu	37	6	57012048	57012048	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031623.2	+1	validated	p.R389*	0.475	167	0%	99	31.3%	-	-	-	-	-	NULL
PRIM2	5558	genome.wustl.edu	37	6	57246860	57246860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425433	+1	known	p.R196Q	1.000	735	0%	338	34.3%	-	-	-	-	-	HMMPfam_DNA_primase_lrg
PRIM2	5558	genome.wustl.edu	37	6	57498969	57498969	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425433	+1	known	p.I411M	1.000	733	0.1%	352	17.3%	-	-	-	-	-	HMMPfam_DNA_primase_lrg
KHDRBS2	202559	genome.wustl.edu	37	6	62611258	62611258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152688.2	-1	validated	p.R168C	1.000	243	0%	122	31.1%	-	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	superfamily_SSF54791
FKBP1C	642489	genome.wustl.edu	37	6	63921757	63921757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370659	+1	known	p.V99A	0.999	180	0%	119	29.4%	-	-	benign(0.066)	deleterious(0.03)	neutral(0.369)	HMMPfam_FKBP_C,superfamily_SSF54534
PTP4A1	7803	genome.wustl.edu	37	6	64288352	64288352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003463.3	+1	reviewed	p.K39R	1.000	266	0%	116	28.4%	-	-	benign(0.005)	tolerated(0.27)	neutral(0.034)	HMMPfam_DSPc,superfamily_(Phosphotyrosine protein) phosphatases II
PHF3	23469	genome.wustl.edu	37	6	64421223	64421223	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.K1321T	1.000	298	0%	153	41.2%	-	-	benign(0.014)	tolerated(0.47)	neutral(0.011)	NULL
PHF3	23469	genome.wustl.edu	37	6	64421669	64421669	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.E1395	1.000	161	0%	79	30.4%	-	-	-	-	-	NULL
PHF3	23469	genome.wustl.edu	37	6	64422457	64422457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.R1658Q	0.979	101	0%	46	37%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PHF3	23469	genome.wustl.edu	37	6	64423533	64423533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.E2017*	0.997	163	0%	65	41.5%	-	-	-	-	-	NULL
EYS	346007	genome.wustl.edu	37	6	64499114	64499114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.L2472S	0.793	137	0%	69	11.6%	-	-	probably_damaging(0.979)	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EYS	346007	genome.wustl.edu	37	6	65149092	65149092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.F1933Y	0.937	119	0%	37	16.2%	-	-	benign(0.429)	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EYS	346007	genome.wustl.edu	37	6	66053969	66053969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.N521D	0.000	209	0%	87	40.2%	-	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
EYS	346007	genome.wustl.edu	37	6	66053984	66053984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.D516N	0.000	236	0%	95	34.7%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
BAI3	577	genome.wustl.edu	37	6	69348580	69348580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.R5C	1.000	263	0.4%	130	33.1%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
BAI3	577	genome.wustl.edu	37	6	69348883	69348883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.H106N	1.000	110	0%	60	35%	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
BAI3	577	genome.wustl.edu	37	6	69684714	69684714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.A529T	1.000	297	0%	127	11%	-	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_HRM,HMMSmart_SM00008
BAI3	577	genome.wustl.edu	37	6	69703758	69703758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.F611L	1.000	319	0%	152	37.5%	-	-	possibly_damaging(0.767)	tolerated(1)	neutral(0.284)	NULL
BAI3	577	genome.wustl.edu	37	6	70049301	70049301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.D1122Y	1.000	754	0%	389	38.6%	-	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_7tm_2
BAI3	577	genome.wustl.edu	37	6	70098668	70098668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.I1485T	1.000	448	0%	184	15.8%	-	-	possibly_damaging(0.527)	deleterious(0.04)	deleterious(0.527)	NULL
COL19A1	1310	genome.wustl.edu	37	6	70637859	70637859	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.R109*	0.539	355	0%	197	34%	-	-	-	-	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
COL19A1	1310	genome.wustl.edu	37	6	70639316	70639316	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	e5-1	1.000	182	0%	116	34.5%	-	-	-	-	-	-
COL19A1	1310	genome.wustl.edu	37	6	70859609	70859609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.P636L	1.000	366	0%	172	34.9%	-	-	probably_damaging(0.996)	tolerated(0.65)	neutral(0.465)	HMMPfam_Collagen
COL9A1	1297	genome.wustl.edu	37	6	70926706	70926706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001851.4	-1	reviewed	p.G887V	1.000	49	0%	47	38.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
FAM135A	57579	genome.wustl.edu	37	6	71186893	71186893	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	p.S134R	1.000	375	0%	211	38.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71269569	71269569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	p.S1302L	1.000	248	0%	132	25.8%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
B3GAT2	135152	genome.wustl.edu	37	6	71571447	71571447	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080742.2	-1	reviewed	p.L297	0.711	473	0%	324	16.4%	-	-	-	-	-	HMMPfam_Glyco_transf_43,superfamily_Nucleotide-diphospho-sugar transferases
OGFRL1	79627	genome.wustl.edu	37	6	72011502	72011502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024576.3	+1	validated	p.A369V	0.001	107	0%	37	59.5%	-	-	possibly_damaging(0.907)	tolerated(0.24)	neutral(0.398)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72889534	72889534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014989.4	+1	reviewed	p.K243R	1.000	69	0%	46	39.1%	-	-	possibly_damaging(0.615)	tolerated(0.56)	neutral(0.220)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72892800	72892800	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014989.4	+1	reviewed	p.E542	1.000	23	0%	16	43.8%	-	-	-	-	-	NULL
RIMS1	22999	genome.wustl.edu	37	6	72974727	72974727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014989.4	+1	reviewed	p.Q1056E	1.000	255	0%	90	24.4%	-	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73751664	73751664	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019842.3	+1	reviewed	p.F165	0.998	819	0.2%	367	37.1%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KHDC1L	100129128	genome.wustl.edu	37	6	73933486	73933486	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126063.2	-1	validated	p.P124	0.000	275	0%	145	21.4%	-	-	-	-	-	NULL
DPPA5	340168	genome.wustl.edu	37	6	74063669	74063669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025290.1	-1	provisional	p.E67K	0.421	50	0%	38	23.7%	-	-	benign(0.023)	deleterious(0)	neutral(0.446)	superfamily_SSF54791
DPPA5	340168	genome.wustl.edu	37	6	74063916	74063916	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025290.1	-1	provisional	p.P11	0.000	111	0%	75	33.3%	-	-	-	-	-	superfamily_SSF54791
SLC17A5	26503	genome.wustl.edu	37	6	74354213	74354213	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012434.4	-1	reviewed	p.S70A	1.000	183	0%	92	42.4%	-	-	benign(0.03)	tolerated(0.18)	neutral(0.058)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
CD109	135228	genome.wustl.edu	37	6	74475777	74475777	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133493.3	+1	reviewed	p.K411T	0.010	285	0%	113	27.4%	-	-	benign(0.014)	tolerated(0.31)	neutral(0.028)	NULL
CD109	135228	genome.wustl.edu	37	6	74475877	74475877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133493.3	+1	reviewed	p.K444N	1.000	95	0%	46	45.7%	-	-	benign(0.039)	tolerated(0.34)	neutral(0.025)	NULL
COL12A1	1303	genome.wustl.edu	37	6	75825601	75825601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.K2532N	1.000	180	0%	70	12.9%	-	-	probably_damaging(1)	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
COL12A1	1303	genome.wustl.edu	37	6	75831091	75831091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.N2338T	1.000	149	0%	78	39.7%	-	-	possibly_damaging(0.945)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL12A1	1303	genome.wustl.edu	37	6	75838063	75838063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.A2097T	0.850	453	0%	189	31.2%	-	-	possibly_damaging(0.551)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75866077	75866077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.S1049L	0.999	557	0%	380	38.4%	-	-	possibly_damaging(0.837)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SENP6	26054	genome.wustl.edu	37	6	76425197	76425197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015571.2	+1	validated	p.L1076M	1.000	249	0%	117	31.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Cysteine proteinases
MYO6	4646	genome.wustl.edu	37	6	76618241	76618241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004999.3	+1	reviewed	p.E1103D	1.000	152	0%	79	40.5%	-	-	unknown(0)	deleterious(0.04)	-	NULL
PHIP	55023	genome.wustl.edu	37	6	79679564	79679564	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017934.5	-1	validated	p.R1065*	1.000	458	0%	194	13.4%	-	-	-	-	-	NULL
PHIP	55023	genome.wustl.edu	37	6	79735718	79735718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017934.5	-1	validated	p.R255Q	1.000	262	0%	133	31.6%	-	-	probably_damaging(0.988)	tolerated(1)	neutral(0.438)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
HMGN3	9324	genome.wustl.edu	37	6	79944269	79944269	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004242.2	-1	reviewed	p.K3	1.000	265	0%	136	34.6%	-	-	-	-	-	HMMPfam_HMG14_17,HMMSmart_SM00527
LCA5	167691	genome.wustl.edu	37	6	80197370	80197370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122769.2	-1	reviewed	p.R482Q	0.000	347	0%	198	37.9%	-	-	benign(0)	tolerated(0.85)	neutral(0.001)	NULL
LCA5	167691	genome.wustl.edu	37	6	80223189	80223189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122769.2	-1	reviewed	p.E154K	1.000	511	0%	293	35.2%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
TTK	7272	genome.wustl.edu	37	6	80744798	80744798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003318.4	+1	reviewed	p.E571K	1.000	235	0%	85	28.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
BCKDHB	594	genome.wustl.edu	37	6	80877395	80877395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000056.3	+1	reviewed	p.G115V	1.000	192	0%	93	39.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
IBTK	25998	genome.wustl.edu	37	6	82924092	82924092	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.Y686D	1.000	371	0%	221	33.9%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00225
DOPEY1	23033	genome.wustl.edu	37	6	83847825	83847825	+	Missense_Mutation	SNP	G	G	A	rs142639349	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015018.2	+1	validated	p.R1355Q	1.000	131	0%	70	41.4%	-	-	possibly_damaging(0.902)	tolerated(0.2)	neutral(0.406)	NULL
SNAP91	9892	genome.wustl.edu	37	6	84371276	84371276	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014841.2	-1	validated	p.E133*	1.000	207	0%	61	42.6%	-	-	-	-	-	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
SNAP91	9892	genome.wustl.edu	37	6	84417533	84417533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014841.2	-1	validated	p.K38N	1.000	254	0%	126	34.9%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
CYB5R4	51167	genome.wustl.edu	37	6	84573933	84573933	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016230.3	+1	validated	p.R39*	1.000	293	0.3%	115	33.9%	-	-	-	-	-	NULL
CYB5R4	51167	genome.wustl.edu	37	6	84634262	84634262	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016230.3	+1	validated	p.L255	1.000	298	0%	172	34.9%	-	-	-	-	-	superfamily_HSP20_chap
KIAA1009	22832	genome.wustl.edu	37	6	84885067	84885067	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014895.2	-1	validated	e13-1	1.000	214	0%	96	20.8%	-	-	-	-	-	-
NT5E	4907	genome.wustl.edu	37	6	86181033	86181033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002526.2	+1	validated	p.K214T	1.000	180	0%	83	15.7%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Metallophos,superfamily_SSF56300
ZNF292	23036	genome.wustl.edu	37	6	87925718	87925718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.R89Q	1.000	432	0%	196	37.2%	-	-	benign(0.248)	tolerated(0.05)	neutral(0.370)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87966540	87966540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.L1065I	1.000	155	0.6%	110	30%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87969797	87969797	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.V2150	0.917	184	0%	110	34.5%	-	-	-	-	-	NULL
ZNF292	23036	genome.wustl.edu	37	6	87970351	87970351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.R2335Q	1.000	129	0%	51	43.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
GJB7	375519	genome.wustl.edu	37	6	87994325	87994325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198568.2	-1	validated	p.E102D	0.919	207	0%	112	25%	-	-	benign(0.187)	tolerated(0.17)	neutral(0.076)	HMMPfam_Connexin
C6orf165	154313	genome.wustl.edu	37	6	88119576	88119576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031743.2	+1	validated	p.E7K	1.000	486	0%	245	18.4%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
SLC35A1	10559	genome.wustl.edu	37	6	88210893	88210893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006416.4	+1	reviewed	p.K124N	1.000	274	0%	162	14.8%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Nuc_sug_transp,superfamily_SSF103481
RARS2	57038	genome.wustl.edu	37	6	88226595	88226595	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020320.3	-1	reviewed	p.F505	0.574	319	0%	114	28.9%	-	-	-	-	-	HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
ORC3	23595	genome.wustl.edu	37	6	88311549	88311549	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181837.1	+1	reviewed	p.R43*	1.000	244	0%	125	32.8%	-	-	-	-	-	HMMPfam_ORC3_N
AKIRIN2	55122	genome.wustl.edu	37	6	88387569	88387569	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018064.3	-1	validated	p.E166*	1.000	625	0.2%	312	35.6%	-	-	-	-	-	NULL
CNR1	1268	genome.wustl.edu	37	6	88853636	88853636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016083.4	-1	reviewed	p.T453M	1.000	284	0%	161	33.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RRAGD	58528	genome.wustl.edu	37	6	90082231	90082231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021244.4	-1	validated	p.V326M	1.000	345	0%	177	37.3%	-	-	probably_damaging(0.99)	tolerated(0.25)	deleterious(0.478)	HMMPfam_Gtr1_RagA
MDN1	23195	genome.wustl.edu	37	6	90450077	90450077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.S1490Y	1.000	287	0%	191	32.5%	-	-	benign(0.223)	deleterious(0.03)	neutral(0.387)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90457135	90457135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.R1273C	0.999	183	0%	108	46.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90466006	90466006	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.G936*	1.000	510	0%	287	12.5%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
GJA10	84694	genome.wustl.edu	37	6	90605023	90605023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032602.1	+1	validated	p.R279I	0.063	139	0%	110	40.9%	-	-	benign(0.016)	deleterious(0.03)	neutral(0.365)	NULL
EPHA7	2045	genome.wustl.edu	37	6	93969124	93969124	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004440.3	-1	reviewed	p.F624	1.000	582	0%	259	35.5%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
EPHA7	2045	genome.wustl.edu	37	6	94120631	94120631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004440.3	-1	reviewed	p.E140D	1.000	437	0%	266	39.1%	-	-	possibly_damaging(0.927)	deleterious(0.03)	deleterious(0.740)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
EPHA7	2045	genome.wustl.edu	37	6	94120637	94120637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004440.3	-1	reviewed	p.I138M	1.000	421	0%	271	42.8%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
UFL1	23376	genome.wustl.edu	37	6	96999380	96999380	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015323.4	+1	validated	p.L630	0.998	102	0%	28	28.6%	-	-	-	-	-	NULL
FHL5	9457	genome.wustl.edu	37	6	97052762	97052762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020482.4	+1	reviewed	p.S99F	1.000	163	0%	105	30.5%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_SSF57716
FHL5	9457	genome.wustl.edu	37	6	97058579	97058579	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020482.4	+1	reviewed	p.D212	0.933	398	0%	213	35.2%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM,superfamily_SSF57716
FHL5	9457	genome.wustl.edu	37	6	97063599	97063599	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020482.4	+1	reviewed	p.K269T	1.000	235	0%	151	35.8%	-	-	benign(0.086)	tolerated(0.12)	neutral(0.267)	HMMPfam_LIM,HMMSmart_LIM
GPR63	81491	genome.wustl.edu	37	6	97247152	97247152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143957.1	-1	validated	p.F152L	0.644	218	0%	82	46.3%	-	-	benign(0.001)	tolerated(0.65)	neutral(0.003)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MMS22L	253714	genome.wustl.edu	37	6	97627365	97627365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.R819C	1.000	258	0%	87	39.1%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
MMS22L	253714	genome.wustl.edu	37	6	97711270	97711270	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.E295*	1.000	310	0.3%	139	35.3%	-	-	-	-	-	NULL
PNISR	25957	genome.wustl.edu	37	6	99849236	99849236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015491.1	-1	validated	p.S533N	1.000	347	0%	225	35.6%	-	-	benign(0.119)	deleterious(0.04)	neutral(0.358)	NULL
USP45	85015	genome.wustl.edu	37	6	99914628	99914628	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080481.1	-1	provisional	p.E343*	1.000	342	0%	206	10.2%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP45	85015	genome.wustl.edu	37	6	99916422	99916422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080481.1	-1	provisional	p.K336E	1.000	413	0%	208	40.9%	-	-	possibly_damaging(0.601)	tolerated(0.07)	deleterious(0.527)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP45	85015	genome.wustl.edu	37	6	99936595	99936595	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080481.1	-1	provisional	p.N194H	1.000	271	0%	143	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_Cysteine proteinases
PRDM13	59336	genome.wustl.edu	37	6	100061103	100061103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021620.3	+1	validated	p.D198N	0.130	20	0%	16	31.2%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ASCC3	10973	genome.wustl.edu	37	6	101110385	101110385	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006828.2	-1	validated	p.R772*	0.996	237	0%	120	28.3%	-	-	-	-	-	HMMSmart_HELICc,superfamily_SSF52540
HACE1	57531	genome.wustl.edu	37	6	105224687	105224687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020771.3	-1	validated	p.R598H	1.000	191	0%	95	32.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
BVES	11149	genome.wustl.edu	37	6	105564609	105564609	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007073.3	-1	reviewed	p.L261	0.433	276	0%	123	39.8%	-	-	-	-	-	HMMPfam_Popeye,superfamily_cAMP-binding domain-like
POPDC3	64208	genome.wustl.edu	37	6	105606227	105606227	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024539.1	-1	validated	NULL	0.000	21	0%	10	60%	-	-	-	-	-	-
POPDC3	64208	genome.wustl.edu	37	6	105606461	105606461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022361.4	-1	reviewed	p.K254Q	0.003	333	0%	148	11.5%	-	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	HMMPfam_Popeye
PREP	5550	genome.wustl.edu	37	6	105736702	105736702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002726.3	-1	reviewed	p.L462S	1.000	378	0%	178	36.5%	-	-	possibly_damaging(0.451)	tolerated(0.1)	neutral(0.434)	superfamily_SSF53474
AIM1	202	genome.wustl.edu	37	6	106968304	106968304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001624.2	+1	validated	p.D666G	0.000	69	0%	29	13.8%	-	-	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
AIM1	202	genome.wustl.edu	37	6	106992668	106992668	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001624.2	+1	validated	p.F1316L	0.991	304	0%	145	42.1%	-	-	probably_damaging(0.987)	tolerated(0.19)	deleterious(0.486)	superfamily_G_crystallin_SF
RTN4IP1	84816	genome.wustl.edu	37	6	107019882	107019882	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032730.4	-1	reviewed	p.N394H	0.321	290	0%	158	43%	-	-	benign(0.397)	tolerated(0.05)	deleterious(0.473)	NULL
PDSS2	57107	genome.wustl.edu	37	6	107566762	107566762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020381.3	-1	reviewed	p.S231Y	1.000	150	0%	57	19.3%	-	-	benign(0.104)	deleterious(0.01)	neutral(0.414)	superfamily_Terpenoid synthases
SEC63	11231	genome.wustl.edu	37	6	108222673	108222673	+	Missense_Mutation	SNP	G	G	A	rs192072257	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007214.4	-1	reviewed	p.R420C	1.000	197	0.5%	117	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec63,HMMSmart_SEC63
OSTM1	28962	genome.wustl.edu	37	6	108375736	108375736	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014028.3	-1	reviewed	p.N191	0.001	309	0%	154	33.8%	-	-	-	-	-	HMMPfam_OSTMP1
ARMC2	84071	genome.wustl.edu	37	6	109294631	109294631	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032131.4	+1	validated	p.E840*	1.000	333	0%	148	30.4%	-	-	-	-	-	superfamily_ARM-type_fold
CEP57L1	285753	genome.wustl.edu	37	6	109468102	109468102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083535.1	+1	validated	p.R101I	0.998	117	0%	38	36.8%	-	-	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	NULL
CEP57L1	285753	genome.wustl.edu	37	6	109480232	109480232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083535.1	+1	validated	p.T250N	0.044	254	0%	105	35.2%	-	-	benign(0.003)	tolerated(0.44)	neutral(0.013)	HMMPfam_DUF1167
PPIL6	285755	genome.wustl.edu	37	6	109748325	109748325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173672.4	-1	validated	p.S152Y	0.000	453	0%	143	37.8%	-	-	benign(0.359)	deleterious(0)	deleterious(0.558)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
SMPD2	6610	genome.wustl.edu	37	6	109764052	109764052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003080.2	+1	validated	p.L197F	0.920	105	0%	67	34.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
MICAL1	64780	genome.wustl.edu	37	6	109766179	109766179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022765.3	-1	validated	p.K967N	0.669	191	0%	127	32.3%	-	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	NULL
ZBTB24	9841	genome.wustl.edu	37	6	109787230	109787230	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014797.2	-1	validated	p.L640V	0.995	382	0%	213	36.2%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
AKD1	221264	genome.wustl.edu	37	6	109814644	109814644	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000470564	-1	known	p.S726*	0.003	426	0%	247	36.8%	-	-	possibly_damaging(0.819)	tolerated(0.81)	neutral(0.310)	NULL
AKD1	221264	genome.wustl.edu	37	6	109814755	109814755	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000490722	-1	known	p.R252*	0.841	163	0%	111	35.1%	-	-	-	-	-	NULL
AKD1	221264	genome.wustl.edu	37	6	109867255	109867255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424296	-1	known	p.K93Q	0.973	176	0%	105	11.4%	-	-	benign(0.201)	tolerated(0.65)	neutral(0.022)	superfamily_SSF52540
AKD1	221264	genome.wustl.edu	37	6	109871346	109871346	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145128.2	-1	provisional	p.E971*	1.000	394	0%	211	34.6%	-	-	-	-	-	HMMPfam_YHS
AKD1	221264	genome.wustl.edu	37	6	109906406	109906406	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000466992	-1	known	p.E249*	0.944	60	0%	19	36.8%	-	-	benign(0)	tolerated(1)	-	NULL
WASF1	8936	genome.wustl.edu	37	6	110426647	110426647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024934.1	-1	reviewed	p.E226*	1.000	144	0%	116	26.7%	-	-	-	-	-	NULL
CDC40	51362	genome.wustl.edu	37	6	110540948	110540948	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015891.2	+1	reviewed	p.R406*	1.000	592	0%	323	36.8%	-	-	-	-	-	superfamily_WD40_like
METTL24	728464	genome.wustl.edu	37	6	110636560	110636560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123364.1	-1	inferred	p.R181H	1.000	300	0%	172	34.9%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SLC22A16	85413	genome.wustl.edu	37	6	110768183	110768183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033125.2	-1	provisional	p.R182W	0.908	117	0%	52	21.2%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RPF2	84154	genome.wustl.edu	37	6	111310216	111310216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454951	+1	known	p.N9H	0.501	276	0%	106	23.6%	-	-	possibly_damaging(0.886)	-	-	HMMPfam_Brix
RPF2	84154	genome.wustl.edu	37	6	111320937	111320937	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032194.1	+1	validated	p.L114	1.000	530	0%	265	29.4%	-	-	-	-	-	HMMPfam_Brix
SLC16A10	117247	genome.wustl.edu	37	6	111543349	111543349	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018593.4	+1	validated	p.E487*	0.999	378	0%	199	32.2%	-	-	-	-	-	superfamily_MFS_gen_substrate_transporter
REV3L	5980	genome.wustl.edu	37	6	111665170	111665170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.R2499Q	1.000	159	0%	96	37.5%	-	-	possibly_damaging(0.777)	tolerated(0.34)	neutral(0.313)	HMMSmart_SM00486,superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111688371	111688371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.R2207I	1.000	269	0%	138	32.6%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111693940	111693940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.R1873Q	1.000	344	0%	245	33.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111694380	111694380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.E1726D	1.000	496	0%	265	37.4%	-	-	benign(0.008)	tolerated(0.32)	neutral(0.024)	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111698985	111698985	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.E506*	1.000	263	0%	235	36.2%	-	-	-	-	-	superfamily_Ribonuclease H-like
FYN	2534	genome.wustl.edu	37	6	112020823	112020823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153047.1	-1	reviewed	p.T250A	1.000	411	0%	210	33.3%	-	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	superfamily_Kinase_like,superfamily_SSF55550
TUBE1	51175	genome.wustl.edu	37	6	112400954	112400954	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016262.4	-1	reviewed	p.A110	0.971	142	0%	77	29.9%	-	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
LAMA4	3910	genome.wustl.edu	37	6	112441673	112441673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.S1493Y	1.000	137	0%	90	36.7%	-	-	possibly_damaging(0.908)	tolerated(0.05)	deleterious(0.707)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
FRK	2444	genome.wustl.edu	37	6	116264282	116264282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002031.2	-1	reviewed	p.E403K	1.000	279	0.4%	157	29.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
DSE	29940	genome.wustl.edu	37	6	116757017	116757017	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080976.1	+1	reviewed	p.P462	1.000	142	0%	77	16.9%	-	-	-	-	-	NULL
DSE	29940	genome.wustl.edu	37	6	116758155	116758155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080976.1	+1	reviewed	p.I842V	1.000	310	0%	138	41.3%	-	-	benign(0)	tolerated(1)	-	NULL
FAM26F	441168	genome.wustl.edu	37	6	116783268	116783268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010919.1	+1	predicted	p.P59Q	0.989	11	0%	14	71.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPRC6A	222545	genome.wustl.edu	37	6	117113780	117113780	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148963.2	-1	validated	p.F769C	0.299	135	0%	74	43.2%	-	-	benign(0.004)	tolerated(0.16)	neutral(0.059)	HMMPfam_7tm_3
VGLL2	245806	genome.wustl.edu	37	6	117589520	117589520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182645.2	+1	provisional	p.V86A	1.000	89	0%	60	38.3%	-	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMPfam_Vg_Tdu
VGLL2	245806	genome.wustl.edu	37	6	117593622	117593622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182645.2	+1	provisional	p.R307C	0.976	597	0%	349	33.8%	-	-	benign(0.09)	deleterious(0.04)	neutral(0.355)	NULL
ROS1	6098	genome.wustl.edu	37	6	117678052	117678052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.N1294S	0.006	525	0%	230	35.7%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117687296	117687296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.E919K	0.978	387	0.3%	175	35.4%	-	-	possibly_damaging(0.896)	tolerated(0.25)	neutral(0.390)	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117709019	117709019	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.K646	0.340	189	0%	124	32.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ROS1	6098	genome.wustl.edu	37	6	117710657	117710657	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.E539*	1.000	252	0%	92	30.4%	-	-	-	-	-	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117718107	117718107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.F250L	1.000	316	0.3%	146	35.6%	-	-	probably_damaging(0.971)	tolerated(0.08)	deleterious(0.713)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SLC35F1	222553	genome.wustl.edu	37	6	118556788	118556788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029858.3	+1	validated	p.T156A	1.000	304	0%	152	28.9%	-	-	possibly_damaging(0.704)	tolerated(0.16)	neutral(0.313)	HMMPfam_DUF914
SLC35F1	222553	genome.wustl.edu	37	6	118596682	118596682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029858.3	+1	validated	p.S233Y	1.000	330	0%	159	38.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF914
CEP85L	387119	genome.wustl.edu	37	6	118790351	118790351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042475.2	-1	validated	p.D713G	1.000	223	0%	108	38.9%	-	-	benign(0.078)	tolerated(0.4)	neutral(0.021)	NULL
MAN1A1	4121	genome.wustl.edu	37	6	119525969	119525969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005907.2	-1	reviewed	p.F357L	0.978	221	0%	125	32.8%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
C6orf170	221322	genome.wustl.edu	37	6	121544405	121544405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152730.4	-1	validated	p.R820S	1.000	317	0%	94	34%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
SERINC1	57515	genome.wustl.edu	37	6	122775054	122775054	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020755.2	-1	provisional	e5-2	1.000	218	0%	128	30.5%	-	-	-	-	-	-
SMPDL3A	10924	genome.wustl.edu	37	6	123126229	123126229	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006714.3	+1	validated	p.K305T	0.010	74	0%	53	34%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	superfamily_SSF56300
CLVS2	134829	genome.wustl.edu	37	6	123332150	123332150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010852.2	+1	provisional	p.L137S	1.000	307	0%	178	35.4%	-	-	possibly_damaging(0.574)	deleterious(0.02)	deleterious(0.580)	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
TRDN	10345	genome.wustl.edu	37	6	123539882	123539882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006073.2	-1	validated	p.P685L	1.000	338	0%	177	36.7%	-	-	unknown(0)	deleterious(0)	-	NULL
TRDN	10345	genome.wustl.edu	37	6	123892070	123892070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006073.2	-1	validated	p.S77L	0.999	122	0%	62	45.2%	-	-	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	HMMPfam_Triadin
HDDC2	51020	genome.wustl.edu	37	6	125598320	125598320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016063.2	-1	validated	p.L149I	1.000	514	0%	236	39%	-	-	possibly_damaging(0.61)	deleterious(0.04)	deleterious(0.560)	HMMSmart_SM00471
NCOA7	135112	genome.wustl.edu	37	6	126210307	126210307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181782.3	+1	validated	p.E369D	0.000	103	0%	52	34.6%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
NCOA7	135112	genome.wustl.edu	37	6	126236596	126236596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181782.3	+1	validated	p.F738L	1.000	217	0%	110	39.1%	-	-	possibly_damaging(0.64)	tolerated(0.64)	neutral(0.227)	NULL
TRMT11	60487	genome.wustl.edu	37	6	126319386	126319386	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031712.2	+1	validated	p.S104	0.932	241	0%	120	30.8%	-	-	-	-	-	NULL
TRMT11	60487	genome.wustl.edu	37	6	126319454	126319454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031712.2	+1	validated	p.R127Q	0.996	213	0%	89	24.7%	-	-	possibly_damaging(0.747)	tolerated(0.06)	deleterious(0.597)	NULL
RNF146	81847	genome.wustl.edu	37	6	127608731	127608731	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030963.2	+1	provisional	p.R324*	0.970	154	0%	113	31.9%	-	-	-	-	-	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127768437	127768437	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014702.4	-1	validated	p.E343*	0.076	357	0%	227	34.4%	-	-	-	-	-	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127771265	127771265	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014702.4	-1	validated	p.K123T	0.494	371	0%	221	29.4%	-	-	probably_damaging(0.958)	tolerated(0.09)	deleterious(0.698)	NULL
C6orf58	352999	genome.wustl.edu	37	6	127901522	127901522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010905.1	+1	predicted	p.K167N	0.080	628	0%	331	30.5%	-	-	benign(0.045)	tolerated(0.39)	neutral(0.018)	HMMPfam_DUF781
THEMIS	387357	genome.wustl.edu	37	6	128134836	128134836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010923.2	-1	reviewed	p.R317I	0.999	362	0%	212	40.6%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
PTPRK	5796	genome.wustl.edu	37	6	128312456	128312456	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135648.1	-1	validated	p.L994V	1.000	443	0%	179	39.1%	-	-	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
LAMA2	3908	genome.wustl.edu	37	6	129670454	129670454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.S1483Y	0.685	268	0%	123	45.5%	-	-	possibly_damaging(0.761)	deleterious(0.01)	deleterious(0.688)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,superfamily_SSF57196
LAMA2	3908	genome.wustl.edu	37	6	129723506	129723506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.S1867Y	1.000	272	0%	134	38.1%	-	-	probably_damaging(0.976)	tolerated(0.05)	deleterious(0.763)	superfamily_ConA_like_lec_gl,superfamily_SSF56399
TMEM244	253582	genome.wustl.edu	37	6	130166964	130166964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010876.1	-1	provisional	p.L23I	0.885	229	0%	86	26.7%	-	-	benign(0.35)	tolerated(1)	neutral(0.111)	NULL
TMEM244	253582	genome.wustl.edu	37	6	130166979	130166979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010876.1	-1	provisional	p.L18I	0.022	222	0%	76	42.1%	-	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
SAMD3	154075	genome.wustl.edu	37	6	130467220	130467220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017373.2	-1	validated	p.D377G	1.000	360	0%	167	24%	-	-	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	NULL
SAMD3	154075	genome.wustl.edu	37	6	130497032	130497032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017373.2	-1	validated	p.S259Y	0.997	292	0%	169	12.4%	-	-	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	NULL
TMEM200A	114801	genome.wustl.edu	37	6	130762066	130762066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052913.2	+1	provisional	p.V167F	1.000	200	0%	75	37.3%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
AKAP7	9465	genome.wustl.edu	37	6	131486234	131486234	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016377.2	+1	reviewed	p.I80S	1.000	194	0%	112	14.3%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_LigT-like,HMMPfam_AKAP7_NLS
AKAP7	9465	genome.wustl.edu	37	6	131520624	131520624	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016377.2	+1	reviewed	p.E183*	1.000	309	0%	161	35.4%	-	-	-	-	-	superfamily_LigT-like,HMMPfam_AKAP7_NLS
MED23	9439	genome.wustl.edu	37	6	131917667	131917667	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004830.2	-1	reviewed	p.N923K	0.998	413	0%	217	35.9%	-	-	benign(0.002)	tolerated(0.56)	neutral(0.006)	NULL
ENPP3	5169	genome.wustl.edu	37	6	131973729	131973729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005021.3	+1	reviewed	p.E109K	0.000	458	0%	224	41.1%	-	-	benign(0.344)	tolerated(0.24)	neutral(0.146)	HMMPfam_Somatomedin_B,HMMSmart_SO,superfamily_SSF90188
OR2A4	79541	genome.wustl.edu	37	6	132021637	132021637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030908.1	-1	provisional	p.R302I	0.104	960	0%	400	5.5%	-	-	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	superfamily_SSF81321
CTAGE9	643854	genome.wustl.edu	37	6	132030480	132030480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145659.1	-1	provisional	p.G560S	0.000	1322	0%	711	11.4%	-	-	benign(0.004)	tolerated(0.06)	neutral(0.323)	NULL
LOC100131774	100131774	genome.wustl.edu	37	6	132270605	132270605	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717693.2	+1	model	p.E174*	1.000	306	0%	177	19.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MOXD1	26002	genome.wustl.edu	37	6	132649197	132649197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015529.2	-1	validated	p.Y301D	0.996	206	0%	95	30.5%	-	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMPfam_Cu2_monooxygen,superfamily_PHM/PNGase F
TAAR9	134860	genome.wustl.edu	37	6	132860470	132860470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175057.3	+1	reviewed	p.D348N	0.000	136	0%	79	16.5%	-	-	-	-	-	NULL
TAAR2	9287	genome.wustl.edu	37	6	132938347	132938347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033080.1	-1	validated	p.K333T	1.000	133	0%	51	43.1%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_Family A G protein-coupled receptor-like
TAAR1	134864	genome.wustl.edu	37	6	132966432	132966432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138327.1	-1	provisional	p.M237I	0.066	176	0%	94	19.1%	-	-	benign(0.014)	tolerated(0.11)	neutral(0.272)	HMMPfam_7tm_1,superfamily_SSF81321
RPS12	6206	genome.wustl.edu	37	6	133137686	133137686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001016.3	+1	reviewed	p.Q73R	1.000	287	0%	195	30.8%	-	-	possibly_damaging(0.639)	tolerated(0.06)	deleterious(0.546)	HMMPfam_Ribosomal_L7Ae,superfamily_L30e-like
EYA4	2070	genome.wustl.edu	37	6	133783489	133783489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004100.4	+1	reviewed	p.L152I	1.000	522	0%	261	36.8%	-	-	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	NULL
EYA4	2070	genome.wustl.edu	37	6	133789786	133789786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004100.4	+1	reviewed	p.S296L	0.902	198	0%	136	33.1%	-	-	possibly_damaging(0.712)	deleterious(0.01)	deleterious(0.663)	NULL
TCF21	6943	genome.wustl.edu	37	6	134210561	134210561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003206.3	+1	reviewed	p.V9A	1.000	94	0%	41	36.6%	-	-	benign(0.126)	tolerated(0.53)	neutral(0.018)	NULL
SLC2A12	154091	genome.wustl.edu	37	6	134349695	134349695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145176.2	-1	validated	p.R423K	0.032	465	0%	227	14.1%	-	-	benign(0)	tolerated(0.94)	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
HBS1L	10767	genome.wustl.edu	37	6	135360726	135360726	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006620.3	-1	reviewed	p.G139*	0.742	301	0%	172	36.6%	-	-	-	-	-	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136589371	136589371	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014739.2	-1	reviewed	p.E776*	1.000	929	0%	487	15.4%	-	-	-	-	-	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136599171	136599171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014739.2	-1	reviewed	p.R283Q	1.000	493	0.2%	254	13.4%	-	-	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136599723	136599723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014739.2	-1	reviewed	p.R99K	1.000	185	0%	94	16%	-	-	unknown(0)	tolerated(0.56)	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136901528	136901528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005923.3	-1	reviewed	p.R1143Q	1.000	289	0%	167	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136913424	136913424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005923.3	-1	reviewed	p.D1038Y	1.000	227	0%	105	15.2%	-	-	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	NULL
PEX7	5191	genome.wustl.edu	37	6	137193352	137193352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000288.3	+1	reviewed	p.A255V	1.000	399	0%	192	37%	-	-	benign(0.146)	tolerated(0.23)	neutral(0.054)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
OLIG3	167826	genome.wustl.edu	37	6	137815154	137815154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175747.2	-1	provisional	p.P52T	0.961	96	0%	52	26.9%	-	-	benign(0.001)	tolerated(0.65)	neutral(0.003)	NULL
PBOV1	59351	genome.wustl.edu	37	6	138539131	138539131	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021635.2	-1	validated	p.I134	0.000	301	0%	168	13.1%	-	-	-	-	-	NULL
KIAA1244	57221	genome.wustl.edu	37	6	138584581	138584581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020340.4	+1	validated	p.R654Q	1.000	95	0%	65	40%	-	-	probably_damaging(0.999)	tolerated(0.26)	deleterious(0.524)	HMMSmart_Sec7
ECT2L	345930	genome.wustl.edu	37	6	139164148	139164148	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077706.1	+1	validated	p.F125	0.991	212	0.5%	145	42.1%	-	-	-	-	-	superfamily_SSF81383
ECT2L	345930	genome.wustl.edu	37	6	139167718	139167718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077706.1	+1	validated	p.K269N	0.921	291	0%	148	35.8%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
ECT2L	345930	genome.wustl.edu	37	6	139189335	139189335	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077706.1	+1	validated	p.E524*	0.704	204	0.5%	102	26.5%	-	-	-	-	-	NULL
HECA	51696	genome.wustl.edu	37	6	139488200	139488200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016217.2	+1	reviewed	p.E351K	1.000	48	0%	29	34.5%	-	-	possibly_damaging(0.942)	tolerated(0.2)	neutral(0.436)	NULL
NMBR	4829	genome.wustl.edu	37	6	142396839	142396839	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002511.2	-1	validated	p.V373	1.000	133	0%	95	24.2%	-	-	-	-	-	NULL
NMBR	4829	genome.wustl.edu	37	6	142409751	142409751	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002511.2	-1	validated	p.A15	0.000	29	0%	26	34.6%	-	-	-	-	-	NULL
GPR126	57211	genome.wustl.edu	37	6	142691386	142691386	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198569.2	+1	reviewed	p.I175	1.000	215	0%	144	27.8%	-	-	-	-	-	superfamily_ConA_like_lec_gl
GPR126	57211	genome.wustl.edu	37	6	142723919	142723919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198569.2	+1	reviewed	p.S636Y	1.000	195	0%	90	18.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143081734	143081734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.F1897L	1.000	157	0%	85	38.8%	-	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143092433	143092433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.S1148L	0.021	38	0%	26	34.6%	-	-	benign(0.059)	deleterious(0.01)	neutral(0.410)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143094052	143094052	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.V608	0.000	230	0%	177	16.4%	-	-	-	-	-	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143095580	143095580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.S99Y	1.000	175	0%	121	34.7%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
AIG1	51390	genome.wustl.edu	37	6	143605277	143605277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016108.2	+1	validated	p.E144K	1.000	259	0%	170	28.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Far-17a_AIG1
ADAT2	134637	genome.wustl.edu	37	6	143749816	143749816	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182503.2	-1	validated	p.I155	0.999	181	0%	82	34.1%	-	-	-	-	-	superfamily_Cytidine deaminase-like
LTV1	84946	genome.wustl.edu	37	6	144165737	144165737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032860.3	+1	provisional	p.L40I	1.000	217	0%	114	35.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LTV
UTRN	7402	genome.wustl.edu	37	6	144724321	144724321	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007124.2	+1	reviewed	e2+1	1.000	195	0%	105	33.3%	-	-	-	-	-	-
UTRN	7402	genome.wustl.edu	37	6	144768368	144768368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007124.2	+1	reviewed	p.T546A	1.000	342	0%	152	36.2%	-	-	benign(0.228)	tolerated(0.18)	neutral(0.079)	HMMSmart_SPEC,superfamily_Spectrin
SHPRH	257218	genome.wustl.edu	37	6	146264653	146264653	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042683.2	-1	validated	p.E622*	0.888	449	0%	234	20.1%	-	-	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SHPRH	257218	genome.wustl.edu	37	6	146264800	146264800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042683.2	-1	validated	p.R573C	0.001	598	0%	259	35.5%	-	-	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRM1	2911	genome.wustl.edu	37	6	146720812	146720812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000838.3	+1	reviewed	p.K879N	1.000	44	0%	26	15.4%	-	-	unknown(0)	deleterious(0.03)	-	NULL
ADGB	79747	genome.wustl.edu	37	6	146920210	146920210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024694.3	+1	provisional	p.H12Y	0.989	158	0%	99	10.1%	-	-	unknown(0)	-	-	NULL
ADGB	79747	genome.wustl.edu	37	6	146977978	146977978	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024694.3	+1	provisional	p.Y158*	0.000	251	0%	119	32.8%	-	-	-	-	-	HMMSmart_SM00230,superfamily_Cysteine proteinases
ADGB	79747	genome.wustl.edu	37	6	147073671	147073671	+	Missense_Mutation	SNP	C	C	T	rs186199600	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024694.3	+1	provisional	p.S1124L	0.910	194	0%	114	27.2%	-	-	benign(0.205)	tolerated(0.35)	neutral(0.041)	NULL
STXBP5	134957	genome.wustl.edu	37	6	147637521	147637521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127715.1	+1	reviewed	p.R594C	1.000	253	0.4%	84	36.9%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
C6orf72	116254	genome.wustl.edu	37	6	149893649	149893649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138785.3	+1	predicted	p.L63I	1.000	399	0%	207	33.8%	-	-	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	NULL
LATS1	9113	genome.wustl.edu	37	6	149997856	149997856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004690.2	-1	reviewed	p.D871Y	1.000	148	0%	114	15.8%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LATS1	9113	genome.wustl.edu	37	6	150023019	150023019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004690.2	-1	reviewed	p.R82*	1.000	401	0%	238	34%	-	-	-	-	-	NULL
ULBP2	80328	genome.wustl.edu	37	6	150267620	150267620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025217.2	+1	provisional	p.E154D	0.001	850	0%	542	36.5%	-	-	benign(0.073)	tolerated(0.37)	neutral(0.024)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
ULBP2	80328	genome.wustl.edu	37	6	150267668	150267668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025217.2	+1	provisional	p.E170D	0.000	972	0%	612	41.3%	-	-	benign(0.031)	tolerated(0.09)	neutral(0.298)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
IYD	389434	genome.wustl.edu	37	6	150690236	150690236	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203395.2	+1	reviewed	p.A23	0.003	197	0%	120	36.7%	-	-	-	-	-	NULL
PLEKHG1	57480	genome.wustl.edu	37	6	151152274	151152274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029884.1	+1	provisional	p.R676Q	1.000	64	0%	38	42.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTHFD1L	25902	genome.wustl.edu	37	6	151198960	151198960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015440.3	+1	validated	p.E139K	0.989	304	0%	173	35.3%	-	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_THF_DHG_CYH,superfamily_Aminoacid dehydrogenase-like N-terminal domain
MTHFD1L	25902	genome.wustl.edu	37	6	151270236	151270236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015440.3	+1	validated	p.D565N	0.989	257	0%	159	13.2%	-	-	benign(0.194)	tolerated(0.34)	neutral(0.041)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKAP12	9590	genome.wustl.edu	37	6	151672558	151672558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005100.3	+1	reviewed	p.D1011G	0.890	121	0%	62	30.6%	-	-	possibly_damaging(0.667)	deleterious(0.02)	deleterious(0.619)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152451882	152451882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.G8709E	1.000	310	0%	184	42.9%	-	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152469279	152469279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.R8293W	1.000	123	0%	80	37.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152539529	152539529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.L7352I	1.000	281	0%	128	28.1%	-	-	benign(0.004)	tolerated(0.54)	neutral(0.007)	HMMPfam_Spectrin,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152540227	152540227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.A7319T	0.488	223	0%	127	28.3%	-	-	benign(0.245)	tolerated(0.19)	neutral(0.075)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152540249	152540249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.K7311N	1.000	227	0%	127	19.7%	-	-	benign(0.148)	tolerated(0.28)	neutral(0.044)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152602997	152602997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.A6109V	0.115	156	0%	105	32.4%	-	-	benign(0.016)	tolerated(0.44)	neutral(0.013)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152642909	152642909	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.E5344*	1.000	493	0%	219	33.3%	-	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152647148	152647148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.S5128Y	0.998	562	0%	244	40.6%	-	-	possibly_damaging(0.644)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152651692	152651692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.L4710I	0.000	160	0%	93	10.8%	-	-	benign(0.002)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152651831	152651831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.F4663L	0.968	178	0%	89	34.8%	-	-	benign(0.004)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152652612	152652612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.S4403L	0.020	153	0%	109	34.9%	-	-	benign(0.009)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152686049	152686049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.Q3360K	1.000	339	0%	224	37.1%	-	-	benign(0.123)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152720894	152720894	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.S2365T	0.118	525	0%	273	38.1%	-	-	benign(0)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152737717	152737717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.A1952V	0.752	279	0%	212	36.3%	-	-	benign(0)	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152784520	152784520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.R689W	0.362	235	0%	106	34%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152823847	152823847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.S270Y	1.000	277	0%	202	33.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
FBXO5	26271	genome.wustl.edu	37	6	153292504	153292504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012177.3	-1	reviewed	p.R380C	0.970	217	0%	119	37.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FBXO5	26271	genome.wustl.edu	37	6	153296106	153296106	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012177.3	-1	reviewed	p.R252*	0.869	275	0%	146	32.2%	-	-	-	-	-	HMMPfam_F-box
MTRF1L	54516	genome.wustl.edu	37	6	153316342	153316342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019041.5	-1	validated	p.D151G	1.000	221	0%	116	34.5%	-	-	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	HMMPfam_PCRF,superfamily_Release factor (Pfam 00472)
CNKSR3	154043	genome.wustl.edu	37	6	154727733	154727733	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173515.2	-1	validated	p.E475*	1.000	166	0%	83	28.9%	-	-	-	-	-	HMMPfam_DUF1170
SCAF8	22828	genome.wustl.edu	37	6	155095157	155095157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014892.3	+1	validated	p.S22L	1.000	475	0%	234	39.3%	-	-	unknown(0)	deleterious(0)	-	HMMSmart_RPR,superfamily_ENTH_VHS
SCAF8	22828	genome.wustl.edu	37	6	155153661	155153661	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014892.3	+1	validated	p.F983C	1.000	100	0%	55	27.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOX3	50508	genome.wustl.edu	37	6	155776037	155776037	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015718.2	-1	reviewed	p.R55*	0.964	107	0%	120	51.7%	-	-	-	-	-	HMMPfam_Ferric_reduct
ARID1B	57492	genome.wustl.edu	37	6	157527627	157527627	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017519.2	+1	validated	p.F1766	0.996	60	0%	51	13.7%	-	-	-	-	-	NULL
ZDHHC14	79683	genome.wustl.edu	37	6	158066798	158066798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024630.2	+1	provisional	p.S261Y	0.936	346	0%	249	16.5%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SNX9	51429	genome.wustl.edu	37	6	158323016	158323016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016224.3	+1	reviewed	p.G187C	0.955	185	0%	103	35.9%	-	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
TMEM181	57583	genome.wustl.edu	37	6	159050772	159050772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020823.1	+1	validated	p.F538L	0.825	460	0%	309	20.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DYNLT1	6993	genome.wustl.edu	37	6	159057915	159057915	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006519.2	-1	validated	p.R96*	1.000	69	0%	48	31.2%	-	-	-	-	-	HMMPfam_Tctex-1
RSPH3	83861	genome.wustl.edu	37	6	159414906	159414906	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031924.4	-1	validated	p.R199*	0.987	339	0%	192	40.6%	-	-	-	-	-	HMMPfam_Radial_spoke_3
TAGAP	117289	genome.wustl.edu	37	6	159457840	159457840	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054114.3	-1	reviewed	p.P405	0.039	99	0%	60	35%	-	-	-	-	-	NULL
TAGAP	117289	genome.wustl.edu	37	6	159460322	159460322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054114.3	-1	reviewed	p.R203W	0.000	216	0%	127	34.6%	-	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ACAT2	39	genome.wustl.edu	37	6	160184041	160184041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005891.2	+1	reviewed	p.P49L	0.186	278	0%	212	33%	-	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
TCP1	6950	genome.wustl.edu	37	6	160200091	160200091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030752.2	-1	reviewed	p.A553S	0.986	173	0%	77	50.6%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160509121	160509121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.A2088T	0.005	186	0%	116	35.3%	-	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
SLC22A1	6580	genome.wustl.edu	37	6	160553319	160553319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003057.2	+1	reviewed	p.V191M	0.916	255	0%	221	36.2%	-	-	benign(0.044)	tolerated(0.1)	neutral(0.289)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A2	6582	genome.wustl.edu	37	6	160671638	160671638	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003058.2	-1	reviewed	p.I205M	0.168	263	0%	149	38.9%	-	-	benign(0.179)	deleterious(0.01)	neutral(0.422)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC22A3	6581	genome.wustl.edu	37	6	160857811	160857811	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021977.2	+1	reviewed	e6-1	1.000	299	0%	151	35.8%	-	-	-	-	-	-
LOC100289195	100289195	genome.wustl.edu	37	6	160874554	160874554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342678.1	-1	model	p.S268Y	1.000	761	0%	358	24%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PLG	5340	genome.wustl.edu	37	6	161155096	161155096	+	Missense_Mutation	SNP	G	G	A	rs182937977	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000301.3	+1	reviewed	p.D553N	1.000	447	0%	243	26.7%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
MAP3K4	4216	genome.wustl.edu	37	6	161508889	161508889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005922.2	+1	reviewed	p.R909Q	0.001	146	0%	104	12.5%	-	-	possibly_damaging(0.756)	tolerated(0.41)	neutral(0.294)	NULL
AGPAT4	56895	genome.wustl.edu	37	6	161570222	161570222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020133.2	-1	reviewed	p.V255A	1.000	355	0%	181	18.8%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	superfamily_SSF69593
LOC100129958	100129958	genome.wustl.edu	37	6	162989888	162989888	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719102.1	+1	model	p.E125	1.000	24	0.000	8	0.500	-	-	-	-	-	HMMPfam_Filament
C6orf118	168090	genome.wustl.edu	37	6	165703464	165703464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144980.3	-1	validated	p.E405*	0.999	357	0%	162	39.5%	-	-	-	-	-	NULL
BRP44L	51660	genome.wustl.edu	37	6	166779476	166779476	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016098.2	-1	validated	p.R97	0.979	232	0%	147	29.3%	-	-	-	-	-	HMMPfam_UPF0041
CCR6	1235	genome.wustl.edu	37	6	167550216	167550216	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004367.5	+1	reviewed	p.I166	0.870	159	0%	109	36.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CCR6	1235	genome.wustl.edu	37	6	167550301	167550301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004367.5	+1	reviewed	p.D195N	0.135	234	0%	136	34.6%	-	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMPfam_7tm_1,superfamily_SSF81321
TCP10L2	401285	genome.wustl.edu	37	6	167585719	167585719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145121.1	+1	inferred	p.E29D	0.000	81	0%	79	11.4%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168265376	168265376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040001.1	+1	validated	p.R84Q	1.000	308	0%	180	37.8%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_RA,HMMSmart_RA
MLLT4	4301	genome.wustl.edu	37	6	168343846	168343846	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040001.1	+1	validated	p.S1038*	1.000	760	0%	376	24.5%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
SMOC2	64094	genome.wustl.edu	37	6	168944304	168944304	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022138.2	+1	reviewed	e5-1	1.000	446	0%	253	17.8%	-	-	-	-	-	-
THBS2	7058	genome.wustl.edu	37	6	169621604	169621604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003247.2	-1	reviewed	p.D1098N	1.000	160	0%	104	28.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl
LOC100289471	100289471	genome.wustl.edu	37	6	169648782	169648782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342681.1	+1	model	p.E23K	0.994	102	0%	100	21%	-	-	-	-	-	NULL
C6orf70	55780	genome.wustl.edu	37	6	170154083	170154083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018341.1	+1	validated	p.V44I	0.314	241	0%	122	33.6%	-	-	possibly_damaging(0.537)	tolerated(0.06)	deleterious(0.504)	NULL
C6orf70	55780	genome.wustl.edu	37	6	170155454	170155454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018341.1	+1	validated	p.S84Y	0.030	489	0%	264	34.1%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
FAM120B	84498	genome.wustl.edu	37	6	170639604	170639604	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032448.1	+1	provisional	p.P661	0.959	227	0%	181	39.8%	-	-	-	-	-	NULL
LOC100132858	100132858	genome.wustl.edu	37	7	36329	36329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715131.2	-1	model	p.R17H	0.025	537	0%	373	13.4%	-	-	-	-	-	NULL
FAM20C	56975	genome.wustl.edu	37	7	195657	195657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020223.2	+1	validated	p.E237K	1.000	85	0%	50	34%	-	-	possibly_damaging(0.936)	tolerated(0.1)	deleterious(0.668)	NULL
SUN1	23353	genome.wustl.edu	37	7	891653	891653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130965.2	+1	reviewed	p.S275Y	1.000	883	0%	553	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MRP
ADAP1	11033	genome.wustl.edu	37	7	943793	943793	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453823	-1	known	p.V149A	0.168	140	0%	106	41.5%	-	-	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
CYP2W1	54905	genome.wustl.edu	37	7	1024874	1024874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017781.2	+1	reviewed	p.R187Q	1.000	98	0%	66	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
INTS1	26173	genome.wustl.edu	37	7	1523706	1523706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080453.2	-1	validated	p.L1121S	1.000	224	0%	124	34.7%	-	-	possibly_damaging(0.874)	deleterious(0.01)	deleterious(0.745)	NULL
INTS1	26173	genome.wustl.edu	37	7	1529228	1529228	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080453.2	-1	validated	p.I752	0.883	93	1.1%	68	38.2%	-	-	-	-	-	NULL
ELFN1	392617	genome.wustl.edu	37	7	1784863	1784863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128636.2	+1	validated	p.A211T	1.000	26	0%	12	50%	-	-	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
SNX8	29886	genome.wustl.edu	37	7	2302882	2302882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013321.1	-1	provisional	p.D300N	0.999	75	0%	73	30.1%	-	-	benign(0.323)	tolerated(0.12)	neutral(0.362)	NULL
SNX8	29886	genome.wustl.edu	37	7	2311526	2311526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013321.1	-1	provisional	p.E167K	1.000	76	0%	49	44.9%	-	-	benign(0.004)	tolerated(0.88)	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CARD11	84433	genome.wustl.edu	37	7	2951848	2951848	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032415.3	-1	validated	p.F1034	0.931	314	0%	193	20.7%	-	-	-	-	-	superfamily_SSF52540
CARD11	84433	genome.wustl.edu	37	7	2955004	2955004	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032415.3	-1	validated	p.F902	0.999	130	0%	123	35%	-	-	-	-	-	NULL
RADIL	55698	genome.wustl.edu	37	7	4839040	4839040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018059.4	-1	validated	p.K1066R	0.873	126	0%	104	35.6%	-	-	benign(0)	tolerated(0.46)	neutral(0.012)	superfamily_PDZ domain-like
PAPOLB	56903	genome.wustl.edu	37	7	4899668	4899668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020144.4	-1	validated	p.E592K	0.231	223	0%	157	38.9%	-	-	benign(0.002)	tolerated(0.63)	neutral(0.004)	NULL
RBAK	57786	genome.wustl.edu	37	7	5104628	5104628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021163.3	+1	reviewed	p.N514S	0.995	82	0%	87	39.1%	-	-	benign(0)	tolerated(0.81)	neutral(0.001)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WIPI2	26100	genome.wustl.edu	37	7	5256816	5256816	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015610.3	+1	validated	p.L192	0.975	278	0%	193	36.3%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
OCM	654231	genome.wustl.edu	37	7	5923555	5923555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097622.1	+1	validated	p.E77K	1.000	706	0%	444	33.1%	-	-	possibly_damaging(0.804)	tolerated(0.23)	neutral(0.344)	superfamily_SSF47473
CCZ1	51622	genome.wustl.edu	37	7	5949680	5949680	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015622.5	+1	validated	p.Q238P	1.000	324	0%	155	77.4%	-	-	benign(0.021)	tolerated(0.3)	neutral(0.030)	HMMPfam_DUF2049
GRID2IP	392862	genome.wustl.edu	37	7	6549923	6549923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145118.1	-1	validated	p.V588F	0.000	97	0%	84	23.8%	-	-	benign(0.054)	tolerated(0.16)	neutral(0.063)	NULL
C7orf26	79034	genome.wustl.edu	37	7	6634125	6634125	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024067.2	+1	predicted	p.C158	0.687	410	0%	286	35.3%	-	-	-	-	-	NULL
C7orf26	79034	genome.wustl.edu	37	7	6639489	6639489	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024067.2	+1	predicted	p.E204*	1.000	318	0%	211	31.8%	-	-	-	-	-	NULL
C7orf26	79034	genome.wustl.edu	37	7	6639938	6639938	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445375	+1	known	p.A91T	0.053	45	0%	33	27.3%	-	-	-	-	-	NULL
ENSG00000198580	0	genome.wustl.edu	37	7	6715608	6715608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000328239	+1	known	p.R78Q	0.037	64	0%	42	42.9%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF12	7559	genome.wustl.edu	37	7	6730875	6730875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016265.3	-1	reviewed	p.I566M	0.020	219	0%	154	44.8%	-	-	possibly_damaging(0.922)	tolerated(0.13)	deleterious(0.624)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100131257	100131257	genome.wustl.edu	37	7	7118599	7118599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716696.1	-1	model	p.R202I	0.236	111	0%	37	27%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C1GALT1	56913	genome.wustl.edu	37	7	7278199	7278199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020156.2	+1	validated	p.N178K	0.997	274	0%	146	39%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C1GALT1	56913	genome.wustl.edu	37	7	7283346	7283346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020156.2	+1	validated	p.L360F	0.586	195	0%	82	43.9%	-	-	benign(0.013)	tolerated(0.09)	neutral(0.297)	NULL
COL28A1	340267	genome.wustl.edu	37	7	7571090	7571090	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037763.2	-1	validated	p.L190	1.000	202	0%	135	40%	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
MIOS	54468	genome.wustl.edu	37	7	7612325	7612325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019005.3	+1	validated	p.D73E	1.000	335	0%	266	36.1%	-	-	benign(0.001)	tolerated(0.73)	neutral(0.002)	superfamily_WD40 repeat-like
LOC340268	340268	genome.wustl.edu	37	7	9767583	9767583	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041608.1	+1	model	NULL	1.000	144	0%	85	32.9%	-	-	-	-	-	-
ENSG00000248675	0	genome.wustl.edu	37	7	10491255	10491255	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510654	-1	known	NULL	1.000	193	0%	105	34.3%	-	-	-	-	-	-
THSD7A	221981	genome.wustl.edu	37	7	11450835	11450835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.A1266V	1.000	548	0%	295	34.9%	-	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7A	221981	genome.wustl.edu	37	7	11676180	11676180	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.F200C	1.000	149	0%	131	38.2%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7A	221981	genome.wustl.edu	37	7	11676283	11676283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.D166Y	0.996	284	0%	187	35.8%	-	-	possibly_damaging(0.87)	tolerated(0.06)	deleterious(0.661)	superfamily_TSP-1 type 1 repeat
TMEM106B	54664	genome.wustl.edu	37	7	12263935	12263935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134232.1	+1	validated	p.D122G	0.993	842	0%	475	37.5%	-	-	possibly_damaging(0.799)	tolerated(0.38)	neutral(0.319)	HMMPfam_DUF1356
TMEM106B	54664	genome.wustl.edu	37	7	12269343	12269343	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134232.1	+1	validated	p.V160	0.996	146	0%	88	39.8%	-	-	-	-	-	HMMPfam_DUF1356
SCIN	85477	genome.wustl.edu	37	7	12662428	12662428	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112706.2	+1	validated	p.V223	0.977	311	0%	155	34.2%	-	-	-	-	-	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins
DGKB	1607	genome.wustl.edu	37	7	14188781	14188781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004080.2	-1	reviewed	p.R797M	1.000	572	0%	222	33.8%	-	-	possibly_damaging(0.782)	deleterious(0)	deleterious(0.738)	NULL
DGKB	1607	genome.wustl.edu	37	7	14733724	14733724	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004080.2	-1	reviewed	p.L229	0.145	245	0%	140	39.3%	-	-	-	-	-	superfamily_EF-hand,superfamily_Cysteine-rich domain
AGMO	392636	genome.wustl.edu	37	7	15240944	15240944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004320.1	-1	provisional	p.S435N	0.999	328	0%	117	37.6%	-	-	possibly_damaging(0.475)	deleterious(0.02)	deleterious(0.539)	NULL
AGMO	392636	genome.wustl.edu	37	7	15470668	15470668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004320.1	-1	provisional	p.A159S	1.000	386	0%	155	35.5%	-	-	possibly_damaging(0.932)	tolerated(0.08)	deleterious(0.678)	HMMPfam_FA_hydroxylase
AHR	196	genome.wustl.edu	37	7	17378960	17378960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001621.4	+1	validated	p.G504E	0.005	106	0%	72	27.8%	-	-	benign(0.245)	deleterious(0.03)	neutral(0.390)	NULL
HDAC9	9734	genome.wustl.edu	37	7	18801781	18801781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178425.2	+1	reviewed	p.R682Q	1.000	242	0%	104	41.3%	-	-	probably_damaging(0.988)	tolerated(0.34)	neutral(0.461)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
TWISTNB	221830	genome.wustl.edu	37	7	19737964	19737964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002926.1	-1	validated	p.R331I	1.000	360	0%	173	29.5%	-	-	benign(0.345)	deleterious(0.02)	deleterious(0.492)	NULL
MACC1	346389	genome.wustl.edu	37	7	20197861	20197861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182762.3	-1	validated	p.R708I	0.061	221	0%	136	32.4%	-	-	possibly_damaging(0.819)	tolerated(0.06)	deleterious(0.632)	superfamily_DEATH domain
ITGB8	3696	genome.wustl.edu	37	7	20421381	20421381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002214.2	+1	reviewed	p.R278I	1.000	138	0%	83	27.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
ABCB5	340273	genome.wustl.edu	37	7	20662955	20662955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000404938	+1	known	p.R16I	0.999	191	0%	67	28.4%	-	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	NULL
ABCB5	340273	genome.wustl.edu	37	7	20691092	20691092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178559.5	+1	validated	p.R16Q	0.996	498	0.2%	265	34.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ABC_tran,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB5	340273	genome.wustl.edu	37	7	20721180	20721180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178559.5	+1	validated	p.R142Q	0.997	306	0%	159	31.4%	-	-	benign(0.253)	tolerated(0.13)	neutral(0.279)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21640504	21640504	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.E1071*	0.995	249	0%	129	32.6%	-	-	-	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21654764	21654764	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.E1295D	1.000	397	0%	192	30.7%	-	-	benign(0.197)	tolerated(0.13)	neutral(0.271)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21779217	21779217	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.E2621*	1.000	217	0%	116	40.5%	-	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21827115	21827115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.E3287K	1.000	248	0%	150	38%	-	-	probably_damaging(0.989)	tolerated(0.16)	deleterious(0.499)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21901539	21901539	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421290	+1	known	p.L152I	1.000	138	0%	88	30.7%	-	-	-	-	-	NULL
ENSG00000105889	0	genome.wustl.edu	37	7	22533224	22533224	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441815	-1	known	p.F253V	0.997	367	0%	228	46.5%	-	-	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	NULL
GPNMB	10457	genome.wustl.edu	37	7	23293000	23293000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005340.1	+1	reviewed	p.S49T	0.868	449	0%	185	41.6%	-	-	benign(0.03)	tolerated(0.06)	neutral(0.324)	NULL
IGF2BP3	10643	genome.wustl.edu	37	7	23508153	23508153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006547.2	-1	reviewed	p.E62K	1.000	319	0%	219	37.4%	-	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
STK31	56164	genome.wustl.edu	37	7	23751758	23751758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.D31N	0.998	617	0.2%	320	32.5%	-	-	benign(0)	tolerated(1)	-	HMMPfam_TUDOR
STK31	56164	genome.wustl.edu	37	7	23775303	23775303	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.E210	1.000	265	0%	136	11.8%	-	-	-	-	-	NULL
STK31	56164	genome.wustl.edu	37	7	23792352	23792352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.A345D	0.806	283	0%	155	38.1%	-	-	benign(0.014)	deleterious(0.02)	neutral(0.384)	NULL
STK31	56164	genome.wustl.edu	37	7	23793934	23793934	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.R378	0.958	318	0%	117	38.5%	-	-	-	-	-	NULL
STK31	56164	genome.wustl.edu	37	7	23808783	23808783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.R529I	0.000	162	0%	73	34.2%	-	-	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
STK31	56164	genome.wustl.edu	37	7	23821115	23821115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.E681D	1.000	289	0%	104	19.2%	-	-	benign(0.219)	tolerated(0.07)	neutral(0.341)	NULL
MPP6	51678	genome.wustl.edu	37	7	24663312	24663312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016447.2	+1	provisional	p.T9M	0.991	151	0%	74	48.6%	-	-	possibly_damaging(0.938)	deleterious(0.05)	deleterious(0.729)	HMMSmart_SM00569,HMMPfam_L27
MPP6	51678	genome.wustl.edu	37	7	24690292	24690292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016447.2	+1	provisional	p.K204N	0.998	137	0%	73	38.4%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
C7orf31	136895	genome.wustl.edu	37	7	25198145	25198145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138811.3	-1	validated	p.P130S	0.978	253	0%	92	29.3%	-	-	probably_damaging(0.961)	tolerated(0.16)	neutral(0.464)	NULL
NFE2L3	9603	genome.wustl.edu	37	7	26224516	26224516	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004289.6	+1	reviewed	p.E400*	0.997	169	0%	116	34.5%	-	-	-	-	-	NULL
HNRNPA2B1	3181	genome.wustl.edu	37	7	26232994	26232994	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031243.2	-1	reviewed	e10-1	1.000	230	0%	114	42.1%	-	-	-	-	-	-
SNX10	29887	genome.wustl.edu	37	7	26404214	26404214	+	Silent	SNP	C	C	T	rs192013192	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013322.2	+1	reviewed	p.F57	1.000	359	0%	135	34.8%	-	-	-	-	-	HMMPfam_PX,HMMSmart_PX,superfamily_PX
SNX10	29887	genome.wustl.edu	37	7	26411445	26411445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013322.2	+1	reviewed	p.L106I	1.000	190	0%	102	43.1%	-	-	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
HOXA4	3201	genome.wustl.edu	37	7	27169151	27169151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002141.4	-1	reviewed	p.R219Q	1.000	198	0%	143	21%	-	-	unknown(0)	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
HOXA7	3204	genome.wustl.edu	37	7	27194663	27194663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006896.3	-1	reviewed	p.K186N	1.000	188	0%	125	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
HOXA11	3207	genome.wustl.edu	37	7	27224642	27224642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005523.5	-1	reviewed	p.R41H	1.000	251	0%	129	48.1%	-	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
HOXA13	3209	genome.wustl.edu	37	7	27237853	27237853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000522.4	-1	reviewed	p.E377D	1.000	468	0%	355	42%	-	-	possibly_damaging(0.796)	tolerated(0.36)	neutral(0.319)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
LOC402644	402644	genome.wustl.edu	37	7	28319066	28319066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126493.1	-1	predicted	p.D85Y	0.999	122	0%	67	29.9%	-	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
CHN2	1124	genome.wustl.edu	37	7	29552334	29552334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004067.2	+1	reviewed	p.E464K	1.000	237	0%	112	33.9%	-	-	possibly_damaging(0.772)	tolerated(0.14)	deleterious(0.536)	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
FKBP14	55033	genome.wustl.edu	37	7	30058685	30058685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017946.2	-1	validated	p.R135Q	1.000	276	0%	119	35.3%	-	-	benign(0.055)	tolerated(0.44)	neutral(0.016)	superfamily_EF-hand,superfamily_FKBP-like
PLEKHA8	84725	genome.wustl.edu	37	7	30094383	30094383	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032639.2	+1	provisional	p.N285	0.000	349	0%	147	19.7%	-	-	-	-	-	NULL
CCDC129	223075	genome.wustl.edu	37	7	31617627	31617627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194300.2	+1	validated	p.R250Q	0.000	181	0%	71	32.4%	-	-	benign(0.149)	deleterious(0.02)	neutral(0.396)	NULL
CCDC129	223075	genome.wustl.edu	37	7	31683147	31683147	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194300.2	+1	validated	p.Q721	0.000	166	0%	79	41.8%	-	-	-	-	-	NULL
AVL9	23080	genome.wustl.edu	37	7	32593351	32593351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015060.1	+1	provisional	p.R181Q	1.000	438	0%	253	34.4%	-	-	probably_damaging(0.988)	tolerated(0.05)	deleterious(0.783)	HMMPfam_Avl9
KBTBD2	25948	genome.wustl.edu	37	7	32909231	32909231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015483.2	-1	validated	p.S533Y	1.000	259	0%	157	30.6%	-	-	benign(0.293)	tolerated(0.05)	neutral(0.436)	superfamily_Galactose oxidase central domain
BBS9	27241	genome.wustl.edu	37	7	33392474	33392474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198428.2	+1	reviewed	p.R514Q	1.000	481	0%	254	37.8%	-	-	benign(0.025)	tolerated(0.42)	neutral(0.015)	NULL
BMPER	168667	genome.wustl.edu	37	7	34091518	34091518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133468.3	+1	validated	p.R241Q	1.000	326	0%	170	30.6%	-	-	benign(0.055)	tolerated(0.15)	neutral(0.244)	HMMPfam_VWC,HMMSmart_VWC
BMPER	168667	genome.wustl.edu	37	7	34094906	34094906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133468.3	+1	validated	p.K306N	1.000	159	0%	59	39%	-	-	benign(0.287)	tolerated(0.47)	neutral(0.099)	HMMPfam_VWC,HMMSmart_VWC
BMPER	168667	genome.wustl.edu	37	7	34192711	34192711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133468.3	+1	validated	p.Q628H	1.000	220	0%	147	29.3%	-	-	benign(0.012)	tolerated(0.59)	neutral(0.005)	superfamily_Cysrich_TIL
NPSR1	387129	genome.wustl.edu	37	7	34851430	34851430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207173.1	+1	reviewed	p.D145Y	1.000	419	0%	225	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000241521	0	genome.wustl.edu	37	7	35201707	35201707	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359917	-1	novel	NULL	1.000	323	0%	132	28%	-	-	-	-	-	-
SEPT7	989	genome.wustl.edu	37	7	35872472	35872472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001788.4	+1	reviewed	p.S44L	1.000	544	0%	206	26.7%	-	-	benign(0.183)	deleterious(0)	neutral(0.462)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA0895	23366	genome.wustl.edu	37	7	36396630	36396630	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100425.1	-1	validated	p.E250*	1.000	270	0%	124	29.8%	-	-	-	-	-	NULL
ANLN	54443	genome.wustl.edu	37	7	36446098	36446098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018685.2	+1	validated	p.D266N	0.470	309	0%	204	42.6%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
ELMO1	9844	genome.wustl.edu	37	7	37136232	37136232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014800.9	-1	reviewed	p.G431D	1.000	206	0%	133	39.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ELMO_CED12
GPR141	353345	genome.wustl.edu	37	7	37780229	37780229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181791.1	+1	provisional	p.K78N	0.000	152	0%	131	41.2%	-	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	HMMPfam_7tm_1,superfamily_SSF81321
TXNDC3	51314	genome.wustl.edu	37	7	37890038	37890038	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016616.4	+1	reviewed	e2+1	1.000	244	0%	130	41.5%	-	-	-	-	-	-
TXNDC3	51314	genome.wustl.edu	37	7	37923979	37923979	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016616.4	+1	reviewed	p.E357*	0.939	305	0%	162	34%	-	-	-	-	-	HMMSmart_NDK,superfamily_NDK
SFRP4	6424	genome.wustl.edu	37	7	37951790	37951790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003014.3	-1	reviewed	p.S241Y	1.000	543	0%	323	32.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
TRGV8	6982	genome.wustl.edu	37	7	38370151	38370151	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390343	-1	known	p.V49	0.001	304	0%	160	36.2%	-	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
RALA	5898	genome.wustl.edu	37	7	39745816	39745816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005402.2	+1	reviewed	p.R198I	1.000	525	0%	152	31.6%	-	-	benign(0.173)	tolerated(0.07)	neutral(0.335)	HMMSmart_SM00176
CDK13	8621	genome.wustl.edu	37	7	40133990	40133990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003718.4	+1	reviewed	p.R1317I	1.000	319	0%	169	33.1%	-	-	probably_damaging(0.959)	tolerated(0.09)	deleterious(0.699)	NULL
C7orf10	79783	genome.wustl.edu	37	7	40228169	40228169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024728.1	+1	provisional	p.R108Q	1.000	208	0%	84	40.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_CoA-Trfase_fam_III
GLI3	2737	genome.wustl.edu	37	7	42005498	42005498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.R1058Q	0.984	53	0%	22	31.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GLI3	2737	genome.wustl.edu	37	7	42006174	42006174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.L833I	0.997	46	0%	12	41.7%	-	-	probably_damaging(0.958)	deleterious(0.05)	deleterious(0.747)	NULL
GLI3	2737	genome.wustl.edu	37	7	42017250	42017250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.E573D	1.000	644	0%	389	29.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_C2H2 and C2HC zinc fingers
GLI3	2737	genome.wustl.edu	37	7	42262776	42262776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.R26Q	1.000	409	0%	210	31%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
HECW1	23072	genome.wustl.edu	37	7	43447270	43447270	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.H247	0.964	172	0%	73	45.2%	-	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
HECW1	23072	genome.wustl.edu	37	7	43547633	43547633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.D1257N	1.000	207	0%	129	17.8%	-	-	possibly_damaging(0.943)	tolerated(0.16)	neutral(0.447)	superfamily_HECT
STK17A	9263	genome.wustl.edu	37	7	43663332	43663332	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004760.2	+1	reviewed	p.V255	1.000	285	0%	149	28.9%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
URGCP	55665	genome.wustl.edu	37	7	43918074	43918074	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077663.1	-1	validated	p.E330*	0.968	116	0%	74	32.4%	-	-	-	-	-	NULL
URGCP	55665	genome.wustl.edu	37	7	43927411	43927411	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077663.1	-1	validated	p.E7*	1.000	320	0%	158	29.7%	-	-	-	-	-	NULL
POLM	27434	genome.wustl.edu	37	7	44118368	44118368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013284.2	-1	validated	p.R229W	0.001	288	0%	187	33.2%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_POLXc,superfamily_DNApol_B_N_like
AEBP1	165	genome.wustl.edu	37	7	44150775	44150775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129.3	+1	reviewed	p.Q551H	1.000	203	0%	156	47.4%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
NPC1L1	29881	genome.wustl.edu	37	7	44561822	44561822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013389.2	-1	reviewed	p.Y886F	1.000	142	0%	107	18.7%	-	-	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_Patched
OGDH	4967	genome.wustl.edu	37	7	44733597	44733597	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002541.3	+1	reviewed	p.V503	0.997	173	0%	123	43.1%	-	-	-	-	-	HMMPfam_E1_dh,superfamily_SSF52518
H2AFV	94239	genome.wustl.edu	37	7	44875157	44875157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012412.4	-1	reviewed	p.S99Y	1.000	211	0%	120	26.7%	-	-	benign(0.096)	deleterious(0)	neutral(0.452)	HMMSmart_SM00414,superfamily_Histone-fold
MYO1G	64005	genome.wustl.edu	37	7	45014795	45014795	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000464434	-1	known	p.E202*	1.000	258	0%	154	34.4%	-	-	-	-	-	HMMSmart_SM00242
MYO1G	64005	genome.wustl.edu	37	7	45015099	45015099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033054.2	-1	validated	p.S183I	1.000	314	0%	220	44.5%	-	-	possibly_damaging(0.805)	deleterious(0.02)	deleterious(0.686)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCM2	83605	genome.wustl.edu	37	7	45109432	45109432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029835.2	+1	reviewed	p.A227V	1.000	196	0%	160	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100287196	100287196	genome.wustl.edu	37	7	45142941	45142941	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342718.1	+1	model	p.E7*	1.000	182	0%	114	21.1%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
ADCY1	107	genome.wustl.edu	37	7	45717647	45717647	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021116.2	+1	reviewed	p.V595	0.000	226	0.4%	135	43.7%	-	-	-	-	-	NULL
ADCY1	107	genome.wustl.edu	37	7	45750216	45750216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021116.2	+1	reviewed	p.R1008W	1.000	124	0%	46	19.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1
PKD1L1	168507	genome.wustl.edu	37	7	47872763	47872763	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.L2088	0.000	108	0%	83	39.8%	-	-	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47892822	47892822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.F1621L	0.994	200	0%	81	34.6%	-	-	possibly_damaging(0.94)	tolerated(0.07)	deleterious(0.704)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47937716	47937716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.S714P	0.226	208	0%	149	28.9%	-	-	probably_damaging(0.963)	tolerated(0.1)	deleterious(0.692)	NULL
SUN3	256979	genome.wustl.edu	37	7	48046873	48046873	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453071	-1	known	p.S47L	0.001	343	0.3%	184	34.2%	-	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48266862	48266862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.D158N	0.981	206	0%	116	35.3%	-	-	probably_damaging(0.996)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48318986	48318986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.G2732E	0.004	143	0%	51	25.5%	-	-	benign(0.385)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48545931	48545931	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	e49-1	1.000	306	0%	129	27.9%	-	-	-	-	-	-
ABCA13	154664	genome.wustl.edu	37	7	48556449	48556449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.R4590Q	0.054	389	0%	216	36.1%	-	-	probably_damaging(0.994)	-	-	NULL
FIGNL1	63979	genome.wustl.edu	37	7	50514794	50514794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042762.1	-1	validated	p.E64D	1.000	208	0%	117	21.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
COBL	23242	genome.wustl.edu	37	7	51287539	51287539	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015198.3	-1	validated	p.Q48	0.001	56	0%	31	22.6%	-	-	-	-	-	HMMPfam_Cobl
EGFR	1956	genome.wustl.edu	37	7	55211175	55211175	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005228.3	+1	reviewed	p.L140V	0.012	269	0%	105	35.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Recep_L_domain,superfamily_L domain-like
ZNF713	349075	genome.wustl.edu	37	7	55991328	55991328	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182633.1	+1	provisional	p.I68	0.746	255	0%	126	28.6%	-	-	-	-	-	HMMSmart_KRAB,superfamily_Krueppel-associated_box
MRPS17	51373	genome.wustl.edu	37	7	56020994	56020994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015969.2	+1	reviewed	p.D36Y	1.000	400	0.3%	226	31.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribosomal_S17,superfamily_Nucleic_acid_OB
LOC441228	441228	genome.wustl.edu	37	7	56357942	56357942	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016387.3	+1	model	NULL	1.000	250	0%	121	32.2%	-	-	-	-	-	-
LOC441228	441228	genome.wustl.edu	37	7	56359180	56359180	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016387.3	+1	model	NULL	0.000	209	0%	143	32.9%	-	-	-	-	-	-
LOC100289196	100289196	genome.wustl.edu	37	7	56671228	56671228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342722.1	+1	model	p.K42N	0.997	99	0%	57	45.6%	-	-	-	-	-	NULL
LOC100130849	100130849	genome.wustl.edu	37	7	56945173	56945173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719090.1	-1	model	p.D81N	1.000	30	0%	26	38.5%	-	-	-	-	-	NULL
ZNF679	168417	genome.wustl.edu	37	7	63726894	63726894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153363.2	+1	validated	p.P295S	1.000	123	0%	92	32.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_C2H2 and C2HC zinc fingers
ZNF736	728927	genome.wustl.edu	37	7	63808751	63808751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423484	+1	known	p.E170D	0.997	287	0%	149	34.9%	-	-	benign(0.33)	deleterious(0.04)	neutral(0.452)	superfamily_C2H2 and C2HC zinc fingers
ZNF680	340252	genome.wustl.edu	37	7	64023306	64023306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178558.4	-1	validated	p.E9D	0.687	377	0%	196	37.8%	-	-	benign(0.047)	tolerated(0.35)	neutral(0.024)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF107	51427	genome.wustl.edu	37	7	64167142	64167142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013746.1	+1	validated	p.H154N	0.989	79	0%	53	37.7%	-	-	possibly_damaging(0.895)	tolerated(0.06)	deleterious(0.675)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF107	51427	genome.wustl.edu	37	7	64167562	64167562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013746.1	+1	validated	p.H294N	0.865	90	0%	48	10.4%	-	-	possibly_damaging(0.783)	deleterious(0)	deleterious(0.738)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF138	7697	genome.wustl.edu	37	7	64292202	64292202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006524.2	+1	validated	p.F137L	0.004	144	0%	68	10.3%	-	-	benign(0.083)	tolerated(0.11)	neutral(0.278)	superfamily_SSF57667
ZNF138	7697	genome.wustl.edu	37	7	64292353	64292353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006524.2	+1	validated	p.R188C	0.975	115	0%	72	38.9%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	superfamily_SSF57667
ZNF92	168374	genome.wustl.edu	37	7	64864361	64864361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152626.2	+1	validated	p.R445I	1.000	79	0%	55	32.7%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GUSB	2990	genome.wustl.edu	37	7	65439612	65439612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000181.3	-1	reviewed	p.R382H	1.000	45	0%	61	24.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_GLYCOSYL_HYDROL_F2_1,HMMPfam_Glyco_hydro_2_C,superfamily_(Trans)glycosidases
ASL	435	genome.wustl.edu	37	7	65548108	65548108	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000048.3	+1	reviewed	p.T131	0.000	59	0%	53	20.8%	-	-	-	-	-	HMMPfam_Lyase_1,superfamily_L-Aspartase-like
TYW1	55253	genome.wustl.edu	37	7	66482898	66482898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018264.2	+1	validated	p.R210Q	1.000	262	0%	198	36.4%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
TYW1	55253	genome.wustl.edu	37	7	66648215	66648215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018264.2	+1	validated	p.E601K	1.000	178	0%	124	43.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Wyosine_form,superfamily_Radical SAM enzymes
LOC442572	442572	genome.wustl.edu	37	7	66744920	66744920	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_499314.5	+1	model	p.E92	0.034	121	0%	77	7.8%	-	-	-	-	-	NULL
AUTS2	26053	genome.wustl.edu	37	7	69599531	69599531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015570.2	+1	validated	p.P212S	1.000	534	0.2%	267	32.6%	-	-	possibly_damaging(0.771)	tolerated(0.17)	neutral(0.345)	NULL
AUTS2	26053	genome.wustl.edu	37	7	70254907	70254907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015570.2	+1	validated	p.K902R	1.000	66	0%	48	16.7%	-	-	possibly_damaging(0.473)	deleterious(0.04)	deleterious(0.505)	NULL
WBSCR17	64409	genome.wustl.edu	37	7	70853331	70853331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022479.1	+1	reviewed	p.H178R	1.000	223	0%	159	28.9%	-	-	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
WBSCR17	64409	genome.wustl.edu	37	7	71036364	71036364	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022479.1	+1	reviewed	p.E353*	1.000	515	0%	293	29.7%	-	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
WBSCR17	64409	genome.wustl.edu	37	7	71130430	71130430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022479.1	+1	reviewed	p.P372H	1.000	193	0%	107	34.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotide-diphospho-sugar transferases
FZD9	8326	genome.wustl.edu	37	7	72849027	72849027	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003508.2	+1	reviewed	p.F230	1.000	66	0%	74	39.2%	-	-	-	-	-	HMMPfam_Frizzled
BAZ1B	9031	genome.wustl.edu	37	7	72863916	72863916	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032408.3	-1	validated	p.C1228	1.000	169	0%	97	41.2%	-	-	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
BAZ1B	9031	genome.wustl.edu	37	7	72922770	72922770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032408.3	-1	validated	p.K86E	1.000	271	0%	158	36.7%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_WAC_Acf1_DNA_bd
BCL7B	9275	genome.wustl.edu	37	7	72951688	72951688	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001707.2	-1	reviewed	p.P183	0.044	65	0%	58	34.5%	-	-	-	-	-	NULL
BCL7B	9275	genome.wustl.edu	37	7	72954379	72954379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001707.2	-1	reviewed	p.E90G	0.999	289	0%	201	43.3%	-	-	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	NULL
TBL2	26608	genome.wustl.edu	37	7	72988370	72988370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012453.2	-1	reviewed	p.R115H	1.000	319	0%	211	37%	-	-	possibly_damaging(0.469)	tolerated(0.07)	deleterious(0.473)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
MLXIPL	51085	genome.wustl.edu	37	7	73011083	73011083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032951.2	-1	reviewed	p.P570S	0.413	74	0%	47	40.4%	-	-	probably_damaging(0.999)	tolerated(0.52)	deleterious(0.499)	NULL
WBSCR22	114049	genome.wustl.edu	37	7	73098222	73098222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423166	+1	known	p.R49I	0.000	44	0%	38	31.6%	-	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
ELN	2006	genome.wustl.edu	37	7	73449761	73449761	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416107	+1	known	p.T50	0.000	198	0%	129	38%	-	-	-	-	-	NULL
GTF2IRD2	84163	genome.wustl.edu	37	7	74211283	74211283	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173537.2	-1	validated	p.T856	0.935	390	0%	210	23.3%	-	-	-	-	-	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74554793	74554793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003795.2	+1	reviewed	p.A303S	0.965	774	0%	414	11.8%	-	-	benign(0.064)	tolerated(0.58)	neutral(0.009)	NULL
SPDYE5	442590	genome.wustl.edu	37	7	75131017	75131017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099435.2	+1	validated	p.R298W	0.004	583	0%	370	36.8%	-	-	-	-	-	NULL
PMS2P3	5387	genome.wustl.edu	37	7	75155276	75155276	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301956	-1	known	p.V86	0.035	159	0%	64	29.7%	-	-	-	-	-	NULL
HIP1	3092	genome.wustl.edu	37	7	75192263	75192263	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005338.4	-1	reviewed	p.L332	1.000	121	0%	92	29.3%	-	-	-	-	-	NULL
STYXL1	51657	genome.wustl.edu	37	7	75657970	75657970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016086.2	-1	validated	p.R52Q	0.025	321	0%	193	25.4%	-	-	benign(0.402)	tolerated(0.32)	neutral(0.153)	HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
SRRM3	222183	genome.wustl.edu	37	7	75915166	75915166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408932	+1	known	p.R32I	0.814	20	0%	18	27.8%	-	-	-	-	-	NULL
YWHAG	7532	genome.wustl.edu	37	7	75959019	75959019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012479.3	-1	reviewed	p.E207K	1.000	305	0%	192	28.1%	-	-	possibly_damaging(0.74)	deleterious(0)	deleterious(0.716)	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
UPK3B	80761	genome.wustl.edu	37	7	76140314	76140314	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030570.2	+1	validated	p.F115	0.021	28	0%	23	26.1%	-	-	-	-	-	NULL
FGL2	10875	genome.wustl.edu	37	7	76828653	76828653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006682.2	-1	reviewed	p.V153A	0.000	318	0%	167	26.9%	-	-	benign(0.002)	tolerated(0.64)	neutral(0.003)	NULL
CCDC146	57639	genome.wustl.edu	37	7	76908289	76908289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020879.2	+1	validated	p.R522Q	0.919	184	0%	98	36.7%	-	-	possibly_damaging(0.645)	deleterious(0.02)	deleterious(0.609)	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77365774	77365774	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198467.2	+1	validated	p.E212*	0.991	257	0%	103	40.8%	-	-	-	-	-	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77365822	77365822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198467.2	+1	validated	p.E228K	1.000	394	0%	142	37.3%	-	-	possibly_damaging(0.798)	tolerated(0.25)	neutral(0.337)	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77379139	77379139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198467.2	+1	validated	p.E368K	0.999	200	0%	105	34.3%	-	-	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77824308	77824308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012301.3	-1	reviewed	p.P718S	1.000	603	0%	328	32.9%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77885472	77885472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012301.3	-1	reviewed	p.A612V	1.000	162	0%	116	15.5%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_PDZ domain-like
GNAT3	346562	genome.wustl.edu	37	7	80103580	80103580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102386.1	-1	provisional	p.D193N	1.000	272	0%	113	27.4%	-	-	possibly_damaging(0.702)	tolerated(0.47)	neutral(0.264)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CD36	948	genome.wustl.edu	37	7	80276172	80276172	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000072.3	+1	reviewed	p.K39T	1.000	458	0%	257	34.2%	-	-	benign(0.012)	tolerated(0.22)	neutral(0.043)	HMMPfam_CD36
SEMA3C	10512	genome.wustl.edu	37	7	80380618	80380618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006379.2	-1	validated	p.P560S	1.000	421	0%	197	31%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_PSI,superfamily_Plexin-like_fold
CACNA2D1	781	genome.wustl.edu	37	7	81588594	81588594	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.V1052	0.000	255	0%	129	36.4%	-	-	-	-	-	NULL
CACNA2D1	781	genome.wustl.edu	37	7	81643795	81643795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.V382L	1.000	257	0%	141	40.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
PCLO	27445	genome.wustl.edu	37	7	82579729	82579729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.S3392N	1.000	231	0%	162	43.2%	-	-	probably_damaging(0.978)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82581257	82581257	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.H3004	0.776	181	0%	108	25.9%	-	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82582015	82582015	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.M2752L	0.000	254	0%	185	37.8%	-	-	benign(0.022)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82582485	82582485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.S2595Y	0.186	215	0%	114	37.7%	-	-	probably_damaging(0.995)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82583199	82583199	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.S2357*	0.003	101	0%	44	40.9%	-	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82583235	82583235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.S2345Y	0.006	100	0%	64	29.7%	-	-	probably_damaging(0.995)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82584797	82584797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.K1824N	1.000	636	0%	265	23.8%	-	-	probably_damaging(0.995)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82584937	82584937	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.E1778*	1.000	159	0%	81	30.9%	-	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82585272	82585272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.R1666Q	0.737	339	0%	218	34.4%	-	-	probably_damaging(0.997)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82585416	82585416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.S1618I	0.934	601	0%	348	31.9%	-	-	probably_damaging(0.998)	-	-	NULL
SEMA3E	9723	genome.wustl.edu	37	7	83029451	83029451	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012431.2	-1	reviewed	p.K420T	0.893	700	0%	336	34.5%	-	-	possibly_damaging(0.797)	tolerated(0.15)	deleterious(0.540)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
GRM3	2913	genome.wustl.edu	37	7	86416119	86416119	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000840.2	+1	reviewed	p.F337	1.000	105	0%	67	16.4%	-	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
KIAA1324L	222223	genome.wustl.edu	37	7	86509846	86509846	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142749.2	-1	validated	p.E1011*	1.000	465	0%	204	44.6%	-	-	-	-	-	NULL
KIAA1324L	222223	genome.wustl.edu	37	7	86577209	86577209	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142749.2	-1	validated	p.E114*	1.000	208	0%	135	31.1%	-	-	-	-	-	superfamily_Growth factor receptor domain
DMTF1	9988	genome.wustl.edu	37	7	86823163	86823163	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454008	+1	known	p.S59L	0.969	142	0%	80	35%	-	-	-	-	-	NULL
C7orf23	79161	genome.wustl.edu	37	7	86826042	86826042	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024315.2	-1	provisional	p.P89	0.656	230	0%	114	27.2%	-	-	-	-	-	NULL
ABCB4	5244	genome.wustl.edu	37	7	87051441	87051441	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018849.2	-1	reviewed	p.L771R	1.000	146	0%	74	36.5%	-	-	possibly_damaging(0.809)	deleterious(0)	deleterious(0.749)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87076456	87076456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018849.2	-1	reviewed	p.S300Y	1.000	557	0%	320	16.9%	-	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87092220	87092220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018849.2	-1	reviewed	p.R47Q	1.000	165	0%	51	31.4%	-	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87092221	87092221	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018849.2	-1	reviewed	p.R47*	1.000	165	0%	51	35.3%	-	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87179241	87179241	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.N494H	0.158	357	0%	251	36.3%	-	-	benign(0.015)	deleterious(0.02)	neutral(0.384)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB1	5243	genome.wustl.edu	37	7	87190589	87190589	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.E273*	1.000	244	0%	121	33.9%	-	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87190704	87190704	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	e7-1	1.000	182	0%	87	27.6%	-	-	-	-	-	-
ABCB1	5243	genome.wustl.edu	37	7	87199525	87199525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.T101A	0.000	337	0%	160	28.7%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
RUNDC3B	154661	genome.wustl.edu	37	7	87407141	87407141	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138290.2	+1	validated	p.R293*	1.000	168	0%	80	32.5%	-	-	-	-	-	NULL
DBF4	10926	genome.wustl.edu	37	7	87529589	87529589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006716.3	+1	validated	p.S245Y	0.634	313	0%	106	33%	-	-	possibly_damaging(0.848)	tolerated(0.9)	neutral(0.326)	NULL
DBF4	10926	genome.wustl.edu	37	7	87536595	87536595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006716.3	+1	validated	p.S381Y	0.643	127	0%	44	22.7%	-	-	possibly_damaging(0.843)	tolerated(0.58)	neutral(0.328)	NULL
ADAM22	53616	genome.wustl.edu	37	7	87774796	87774796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021723.2	+1	reviewed	p.D487N	1.000	163	0%	81	33.3%	-	-	benign(0.026)	tolerated(0.35)	neutral(0.022)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1
ADAM22	53616	genome.wustl.edu	37	7	87808310	87808310	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413139	+1	known	p.H87Y	1.000	414	0%	147	36.1%	-	-	-	-	-	NULL
STEAP4	79689	genome.wustl.edu	37	7	87910240	87910240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024636.2	-1	validated	p.R380L	1.000	262	0%	126	34.9%	-	-	probably_damaging(0.995)	tolerated(0.68)	neutral(0.460)	HMMPfam_Ferric_reduct
ZNF804B	219578	genome.wustl.edu	37	7	88964173	88964173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.S626Y	0.072	180	0%	107	39.3%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88965185	88965185	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.C963	0.001	173	0%	64	31.2%	-	-	-	-	-	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88965970	88965970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.S1225Y	1.000	306	0%	153	39.2%	-	-	possibly_damaging(0.8)	tolerated(0.05)	deleterious(0.646)	NULL
STEAP2	261729	genome.wustl.edu	37	7	89854538	89854538	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040665.1	+1	reviewed	p.R48*	0.998	584	0%	253	34.4%	-	-	-	-	-	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
CDK14	5218	genome.wustl.edu	37	7	90741908	90741908	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012395.2	+1	validated	p.C384	1.000	106	0%	48	29.2%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AKAP9	10142	genome.wustl.edu	37	7	91631005	91631005	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.E592*	1.000	100	0%	45	24.4%	-	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91632395	91632395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.S1055Y	0.010	135	0.7%	56	32.1%	-	-	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91709328	91709328	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.E2627	0.967	96	0%	39	23.1%	-	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91712715	91712715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.L2798I	0.124	155	0%	86	39.5%	-	-	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	NULL
CYP51A1	1595	genome.wustl.edu	37	7	91761114	91761114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000786.3	-1	reviewed	p.E89K	1.000	117	0%	34	35.3%	-	-	benign(0.223)	tolerated(1)	neutral(0.022)	HMMPfam_p450,superfamily_Cytochrome P450
ENSG00000240720	0	genome.wustl.edu	37	7	91793733	91793733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430130	-1	known	p.L262V	1.000	56	0%	28	60.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
ENSG00000240720	0	genome.wustl.edu	37	7	91794393	91794393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430130	-1	known	p.E42K	0.017	181	0%	98	37.8%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
KRIT1	889	genome.wustl.edu	37	7	91843226	91843226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004912.3	-1	reviewed	p.R600C	0.982	620	0%	288	35.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
KRIT1	889	genome.wustl.edu	37	7	91863867	91863867	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004912.3	-1	reviewed	p.S295	1.000	123	0%	67	38.8%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PEX1	5189	genome.wustl.edu	37	7	92116851	92116851	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000466.2	-1	reviewed	p.E1258*	1.000	204	0%	72	41.7%	-	-	-	-	-	NULL
PEX1	5189	genome.wustl.edu	37	7	92147281	92147281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000466.2	-1	reviewed	p.R183Q	0.441	193	0%	126	38.1%	-	-	benign(0)	tolerated(0.98)	-	NULL
RBM48	84060	genome.wustl.edu	37	7	92158876	92158876	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032120.2	+1	validated	p.F66	1.000	362	0%	146	28.1%	-	-	-	-	-	superfamily_RNA-binding domain RBD
CDK6	1021	genome.wustl.edu	37	7	92354985	92354985	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145306.1	-1	reviewed	p.F164	0.999	351	0%	160	34.4%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SAMD9	54809	genome.wustl.edu	37	7	92731114	92731114	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.F1433V	1.000	231	0%	108	40.7%	-	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92731780	92731780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.L1211I	0.978	248	0%	134	33.6%	-	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92732450	92732450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.L987F	0.996	296	0%	207	22.7%	-	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92733240	92733240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.S724Y	0.001	539	0%	294	34.4%	-	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92733543	92733543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.S623Y	0.998	289	0%	142	38%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92733974	92733974	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.T479	0.830	157	0%	88	40.9%	-	-	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92761560	92761560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.P1242H	0.008	196	0%	100	36%	-	-	benign(0.293)	deleterious(0.01)	deleterious(0.496)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92762075	92762075	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.V1070	0.995	201	0%	134	35.8%	-	-	-	-	-	NULL
COL1A2	1278	genome.wustl.edu	37	7	94043216	94043216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000089.3	+1	reviewed	p.G541V	1.000	332	0.3%	184	34.8%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL1A2	1278	genome.wustl.edu	37	7	94058739	94058739	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000089.3	+1	reviewed	p.C1317	1.000	175	0%	85	32.9%	-	-	-	-	-	HMMPfam_COLFI,HMMSmart_SM00038
CASD1	64921	genome.wustl.edu	37	7	94162545	94162545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022900.4	+1	validated	p.V163A	1.000	222	0%	123	20.3%	-	-	benign(0.134)	deleterious(0.01)	neutral(0.417)	NULL
SGCE	8910	genome.wustl.edu	37	7	94285366	94285366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099401.1	-1	reviewed	p.W15C	1.000	41	0%	23	39.1%	-	-	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
PEG10	23089	genome.wustl.edu	37	7	94293045	94293045	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040152.1	+1	reviewed	p.I59	0.055	117	0%	76	28.9%	-	-	-	-	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94539735	94539735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017650.2	+1	validated	p.E104*	1.000	158	0%	68	41.2%	-	-	-	-	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94540006	94540006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017650.2	+1	validated	p.R194Q	1.000	171	0%	111	41.4%	-	-	unknown(0)	tolerated(0.07)	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94540569	94540569	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017650.2	+1	validated	p.E382*	0.979	200	0%	114	25.4%	-	-	-	-	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94740608	94740608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017650.2	+1	validated	p.R478I	1.000	249	0%	107	46.7%	-	-	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94913494	94913494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433360	+1	known	p.P1154L	1.000	339	0%	166	38.6%	-	-	possibly_damaging(0.844)	tolerated(0.09)	deleterious(0.620)	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94913593	94913593	+	Missense_Mutation	SNP	T	T	G	rs187784191	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433360	+1	known	p.F1187C	0.875	569	0%	272	34.2%	-	-	possibly_damaging(0.547)	tolerated(0.16)	neutral(0.245)	NULL
PON1	5444	genome.wustl.edu	37	7	94928407	94928407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000446.5	-1	reviewed	p.R306Q	0.462	115	0%	74	13.5%	-	-	possibly_damaging(0.716)	tolerated(0.1)	deleterious(0.545)	superfamily_Calcium-dependent phosphotriesterase
ASB4	51666	genome.wustl.edu	37	7	95125241	95125241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016116.1	+1	reviewed	p.V120A	0.313	316	0%	212	34%	-	-	benign(0)	tolerated(0.8)	neutral(0.001)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ASB4	51666	genome.wustl.edu	37	7	95157466	95157466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016116.1	+1	reviewed	p.E277K	0.994	93	1.1%	55	20%	-	-	possibly_damaging(0.647)	tolerated(0.82)	neutral(0.228)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PDK4	5166	genome.wustl.edu	37	7	95222231	95222231	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002612.3	-1	reviewed	p.R124*	1.000	380	0%	219	38.4%	-	-	-	-	-	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
DYNC1I1	1780	genome.wustl.edu	37	7	95662061	95662061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004411.4	+1	validated	p.S417F	1.000	520	0%	325	37.8%	-	-	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SLC25A13	10165	genome.wustl.edu	37	7	95814274	95814274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014251.2	-1	reviewed	p.S328L	1.000	268	0%	102	39.2%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
DLX6	1750	genome.wustl.edu	37	7	96637108	96637108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005222.3	+1	reviewed	p.E171K	1.000	160	0%	70	42.9%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ASNS	440	genome.wustl.edu	37	7	97493580	97493580	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001673.4	-1	reviewed	p.E160*	1.000	178	0%	77	36.4%	-	-	-	-	-	HMMPfam_GATase_2,superfamily_SSF56235
LMTK2	22853	genome.wustl.edu	37	7	97766633	97766633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014916.3	+1	reviewed	p.A37V	0.009	212	0%	69	30.4%	-	-	possibly_damaging(0.85)	tolerated(0.25)	neutral(0.364)	NULL
LMTK2	22853	genome.wustl.edu	37	7	97822385	97822385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014916.3	+1	reviewed	p.L870I	0.002	64	0%	40	25%	-	-	benign(0.074)	tolerated(0.32)	neutral(0.029)	NULL
LMTK2	22853	genome.wustl.edu	37	7	97823422	97823422	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014916.3	+1	reviewed	p.F1215	0.000	81	1.2%	62	41.9%	-	-	-	-	-	NULL
BAIAP2L1	55971	genome.wustl.edu	37	7	97946560	97946560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018842.4	-1	reviewed	p.A153T	0.995	778	0%	377	35.3%	-	-	benign(0.074)	tolerated(0.07)	neutral(0.324)	HMMPfam_IMD
NPTX2	4885	genome.wustl.edu	37	7	98254427	98254427	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002523.2	+1	reviewed	p.I279	0.798	33	0%	33	42.4%	-	-	-	-	-	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
TRRAP	8295	genome.wustl.edu	37	7	98478861	98478861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.D30N	1.000	132	0%	76	34.2%	-	-	unknown(0)	deleterious(0)	-	NULL
TRRAP	8295	genome.wustl.edu	37	7	98547728	98547728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.R1701Q	1.000	238	0%	134	36.6%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98609051	98609051	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.R3701*	1.000	151	0%	72	38.9%	-	-	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
KPNA7	402569	genome.wustl.edu	37	7	98792823	98792823	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145715.1	-1	validated	p.I141	0.882	169	0%	79	46.8%	-	-	-	-	-	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
PTCD1	26024	genome.wustl.edu	37	7	99027294	99027294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015545.2	-1	validated	p.E244K	0.999	213	0%	141	25.5%	-	-	benign(0.004)	tolerated(0.24)	neutral(0.037)	NULL
ZNF789	285989	genome.wustl.edu	37	7	99084142	99084142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213603.2	+1	validated	p.Q103H	0.205	152	0%	79	36.7%	-	-	possibly_damaging(0.745)	tolerated(0.08)	deleterious(0.574)	NULL
ZKSCAN5	23660	genome.wustl.edu	37	7	99129309	99129309	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014569.3	+1	reviewed	p.R653*	0.997	236	0%	136	21.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZKSCAN5	23660	genome.wustl.edu	37	7	99129834	99129834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014569.3	+1	reviewed	p.P828S	0.000	176	0%	81	39.5%	-	-	benign(0)	deleterious(0)	neutral(0.445)	superfamily_C2H2 and C2HC zinc fingers
FAM200A	221786	genome.wustl.edu	37	7	99144807	99144807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145111.2	-1	validated	p.E408D	0.891	51	0%	24	41.7%	-	-	probably_damaging(0.999)	tolerated(0.35)	deleterious(0.511)	NULL
CYP3A5	1577	genome.wustl.edu	37	7	99250280	99250280	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000777.2	-1	reviewed	p.I383	0.904	414	0%	234	36.3%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP3A4	1576	genome.wustl.edu	37	7	99359681	99359681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017460.3	-1	reviewed	p.E412D	0.918	517	0%	296	36.1%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_p450,superfamily_Cytochrome P450
TRIM4	89122	genome.wustl.edu	37	7	99516655	99516655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033017.2	-1	reviewed	p.D124N	0.396	19	0%	12	33.3%	-	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	NULL
C7orf59	389541	genome.wustl.edu	37	7	99751490	99751490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008395.2	+1	validated	p.V68G	1.000	149	0%	82	40.2%	-	-	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
C7orf43	55262	genome.wustl.edu	37	7	99752900	99752900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018275.3	-1	predicted	p.R525Q	1.000	128	0%	60	40%	-	-	possibly_damaging(0.793)	tolerated(0.06)	deleterious(0.621)	NULL
ZCWPW1	55063	genome.wustl.edu	37	7	100004384	100004384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017984.3	-1	validated	p.S368Y	1.000	216	0%	139	33.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
ZCWPW1	55063	genome.wustl.edu	37	7	100004910	100004910	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017984.3	-1	validated	p.E336*	1.000	211	0%	109	37.6%	-	-	-	-	-	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
MEPCE	56257	genome.wustl.edu	37	7	100030674	100030674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019606.4	+1	provisional	p.R602W	0.087	57	0%	51	29.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bin3,superfamily_SSF53335
C7orf61	402573	genome.wustl.edu	37	7	100061192	100061192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004323.1	-1	predicted	p.E61K	0.001	120	0%	78	34.6%	-	-	probably_damaging(0.981)	tolerated(0.32)	neutral(0.450)	NULL
TSC22D4	81628	genome.wustl.edu	37	7	100071934	100071934	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030935.3	-1	provisional	p.L298	0.995	291	0%	128	14.8%	-	-	-	-	-	NULL
LRCH4	4034	genome.wustl.edu	37	7	100179403	100179403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002319.3	-1	reviewed	p.E199K	1.000	185	0%	127	41.7%	-	-	benign(0.014)	tolerated(0.07)	neutral(0.320)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
LRCH4	4034	genome.wustl.edu	37	7	100179671	100179671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002319.3	-1	reviewed	p.R162Q	0.977	148	0%	79	20.3%	-	-	probably_damaging(0.997)	tolerated(0.26)	deleterious(0.500)	HMMPfam_LRR_1,superfamily_SSF52058
FBXO24	26261	genome.wustl.edu	37	7	100187668	100187668	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033506.2	+1	reviewed	p.P36	0.788	107	0%	47	36.2%	-	-	-	-	-	superfamily_F-box domain
FBXO24	26261	genome.wustl.edu	37	7	100197772	100197772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033506.2	+1	reviewed	p.R442H	1.000	33	0%	42	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RCC1/BLIP-II
TFR2	7036	genome.wustl.edu	37	7	100225436	100225436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003227.3	-1	reviewed	p.S538Y	0.305	193	0%	99	32.3%	-	-	benign(0.01)	tolerated(0.24)	neutral(0.038)	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
ZAN	7455	genome.wustl.edu	37	7	100348354	100348354	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.F452	0.001	93	1.1%	60	38.3%	-	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1
ZAN	7455	genome.wustl.edu	37	7	100349824	100349824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.S699Y	0.001	932	0%	492	38%	-	-	unknown(0)	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100349892	100349892	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.E722*	0.001	745	0.1%	360	26.4%	-	-	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100350713	100350713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.E995D	0.000	983	0%	566	39.4%	-	-	probably_damaging(0.962)	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100358100	100358100	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.T1261	0.002	544	0%	316	35.1%	-	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
ZAN	7455	genome.wustl.edu	37	7	100365543	100365543	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.T1650	0.451	174	0%	148	35.8%	-	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
EPHB4	2050	genome.wustl.edu	37	7	100410814	100410814	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004444.4	-1	reviewed	p.I591	1.000	277	0%	176	39.8%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
SRRT	51593	genome.wustl.edu	37	7	100484426	100484426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015908.5	+1	validated	p.S553L	0.997	145	0%	65	36.9%	-	-	benign(0.156)	deleterious(0)	neutral(0.459)	NULL
LOC100127899	100127899	genome.wustl.edu	37	7	100490900	100490900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718072.2	+1	model	p.V101M	0.659	55	0%	33	45.5%	-	-	-	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100633889	100633889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.F158L	0.066	105	0%	58	31%	-	-	unknown(0)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100648579	100648579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.S5055L	0.000	595	0%	298	36.6%	-	-	benign(0.29)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100676050	100676050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S451R	0.006	648	0%	324	34.3%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100676139	100676139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.T481N	0.014	641	0%	371	31%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100676331	100676331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S545Y	0.002	683	0%	371	38.5%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100677216	100677216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S840Y	0.003	702	0.3%	374	37.7%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100678316	100678316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.T1207A	0.000	945	0%	470	18.5%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100679343	100679343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S1549Y	0.001	635	0%	379	34.3%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100681401	100681401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S2235Y	0.009	633	0%	355	11.5%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100684113	100684113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S3139Y	0.017	562	0%	358	36.6%	-	-	probably_damaging(0.999)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100684464	100684464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S3256F	0.024	629	0%	419	35.3%	-	-	probably_damaging(0.976)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100685280	100685280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.P3528L	0.000	468	0%	237	23.6%	-	-	benign(0.183)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100686138	100686138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.T3814N	0.002	266	0%	164	31.7%	-	-	probably_damaging(0.969)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100701322	100701322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.F4493L	0.013	285	0%	151	33.8%	-	-	unknown(0)	-	-	NULL
MOGAT3	346606	genome.wustl.edu	37	7	100841616	100841616	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178176.2	-1	provisional	p.D175A	0.478	43	2.3%	38	31.6%	-	-	probably_damaging(0.968)	tolerated(0.55)	neutral(0.417)	HMMPfam_DAGAT
PLOD3	8985	genome.wustl.edu	37	7	100855179	100855179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001084.4	-1	reviewed	p.D394N	0.966	53	0%	52	36.5%	-	-	benign(0.17)	tolerated(0.1)	neutral(0.302)	NULL
CUX1	1523	genome.wustl.edu	37	7	101758501	101758501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.R208*	1.000	252	0%	121	34.7%	-	-	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101801847	101801847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.E228K	1.000	191	0%	100	35%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
NAPEPLD	222236	genome.wustl.edu	37	7	102768997	102768997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122838.1	-1	validated	p.S76Y	0.705	314	0.3%	159	28.9%	-	-	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	NULL
NAPEPLD	222236	genome.wustl.edu	37	7	102769237	102769237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455523	-1	known	p.S69Y	0.283	119	0%	80	30%	-	-	unknown(0)	deleterious(0.05)	-	NULL
PMPCB	9512	genome.wustl.edu	37	7	102940676	102940676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004279.2	+1	reviewed	p.G127S	1.000	316	0%	153	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16
DNAJC2	27000	genome.wustl.edu	37	7	102962393	102962393	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014377.1	-1	reviewed	p.R357*	1.000	818	0%	372	34.9%	-	-	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103194233	103194233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.G1948E	1.000	553	0%	291	24.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
RELN	5649	genome.wustl.edu	37	7	103276011	103276011	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.L776	0.983	184	0%	108	46.3%	-	-	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103293081	103293081	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.V560	1.000	267	0.4%	151	35.1%	-	-	-	-	-	NULL
MLL5	55904	genome.wustl.edu	37	7	104746105	104746105	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018682.3	+1	reviewed	p.E806*	1.000	229	0.4%	111	33.3%	-	-	-	-	-	NULL
MLL5	55904	genome.wustl.edu	37	7	104747985	104747985	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018682.3	+1	reviewed	p.L1027	0.933	211	0%	101	33.7%	-	-	-	-	-	NULL
MLL5	55904	genome.wustl.edu	37	7	104752365	104752365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018682.3	+1	reviewed	p.E1388K	0.999	242	0%	155	11%	-	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
MLL5	55904	genome.wustl.edu	37	7	104753711	104753711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018682.3	+1	reviewed	p.Q1836H	1.000	183	0%	99	23.2%	-	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
PUS7	54517	genome.wustl.edu	37	7	105146713	105146713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019042.3	-1	validated	p.D136N	1.000	197	0%	95	32.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PsdUridine_synth_cat_dom
ATXN7L1	222255	genome.wustl.edu	37	7	105254975	105254975	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020725.1	-1	validated	p.S602	0.853	639	0.2%	471	41%	-	-	-	-	-	NULL
CDHR3	222256	genome.wustl.edu	37	7	105641911	105641911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000496633	+1	known	p.R140Q	0.001	206	0%	158	34.2%	-	-	benign(0.007)	tolerated(0.32)	neutral(0.024)	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106509047	106509047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002649.2	+1	reviewed	p.E347D	0.912	49	0%	54	24.1%	-	-	benign(0.157)	tolerated(0.64)	neutral(0.017)	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106545662	106545662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002649.2	+1	reviewed	p.D1047Y	1.000	321	0.3%	141	24.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PIK3CG	5294	genome.wustl.edu	37	7	106545758	106545758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002649.2	+1	reviewed	p.G1079*	1.000	279	0%	147	35.4%	-	-	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PRKAR2B	5577	genome.wustl.edu	37	7	106710740	106710740	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002736.2	+1	reviewed	p.R108*	1.000	293	0%	112	33%	-	-	-	-	-	superfamily_cNMP_binding
PRKAR2B	5577	genome.wustl.edu	37	7	106768681	106768681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002736.2	+1	reviewed	p.Q141*	1.000	362	0%	198	34.3%	-	-	-	-	-	superfamily_cNMP_binding
BCAP29	55973	genome.wustl.edu	37	7	107253834	107253834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008405.2	+1	validated	p.S216L	0.993	251	0.4%	107	32.7%	-	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Bap31
SLC26A4	5172	genome.wustl.edu	37	7	107353047	107353047	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000441.1	+1	reviewed	p.E767*	1.000	371	0%	196	35.2%	-	-	-	-	-	NULL
SLC26A3	1811	genome.wustl.edu	37	7	107430109	107430109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000111.2	-1	reviewed	p.G199R	1.000	126	0%	38	13.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfate_transp
DLD	1738	genome.wustl.edu	37	7	107543968	107543968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000108.3	+1	reviewed	p.D105Y	1.000	506	0%	249	26.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pyr_redox_2,superfamily_SSF51905
LAMB1	3912	genome.wustl.edu	37	7	107569598	107569598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.E1600K	0.997	630	0%	334	37.4%	-	-	possibly_damaging(0.49)	deleterious(0.03)	deleterious(0.527)	superfamily_Prefoldin
LAMB1	3912	genome.wustl.edu	37	7	107593977	107593977	+	Missense_Mutation	SNP	C	C	T	rs193010498	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.R1026Q	0.991	195	0%	126	38.1%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin
LAMB4	22798	genome.wustl.edu	37	7	107689877	107689877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007356.2	-1	validated	p.R1339M	0.093	635	0%	297	35%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107756514	107756514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007356.2	-1	validated	p.L43I	1.000	116	0%	61	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_N,HMMSmart_SM00136
THAP5	168451	genome.wustl.edu	37	7	108206293	108206293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130475.1	-1	validated	p.S85Y	1.000	411	0.2%	214	36.4%	-	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_THAP,HMMSmart_SM00692
DNAJB9	4189	genome.wustl.edu	37	7	108213426	108213426	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012328.1	+1	provisional	p.R101	0.998	250	0%	134	33.6%	-	-	-	-	-	superfamily_Chaperone J-domain
LRRN3	54674	genome.wustl.edu	37	7	110763330	110763330	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099658.1	+1	validated	p.R168*	1.000	158	0%	73	41.1%	-	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
DOCK4	9732	genome.wustl.edu	37	7	111535738	111535738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014705.3	-1	reviewed	p.S506Y	1.000	347	0%	131	41.2%	-	-	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111580191	111580191	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445943	-1	known	p.R305K	1.000	270	0%	228	36.8%	-	-	-	-	-	NULL
DOCK4	9732	genome.wustl.edu	37	7	111584871	111584871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014705.3	-1	reviewed	p.R280Q	1.000	471	0%	226	15.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF277	11179	genome.wustl.edu	37	7	111980968	111980968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021994.2	+1	validated	p.R351W	1.000	233	0%	116	69.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IFRD1	3475	genome.wustl.edu	37	7	112096972	112096972	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007245.1	+1	validated	p.A96	0.360	287	0%	133	36.1%	-	-	-	-	-	HMMPfam_IFRD,superfamily_ARM repeat
C7orf53	286006	genome.wustl.edu	37	7	112127096	112127096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134468.1	+1	validated	p.I82M	0.582	492	0%	258	38.4%	-	-	benign(0.418)	deleterious(0)	deleterious(0.580)	NULL
TMEM168	64418	genome.wustl.edu	37	7	112412926	112412926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022484.4	-1	validated	p.E486K	1.000	237	0%	112	42.9%	-	-	possibly_damaging(0.594)	deleterious(0.04)	deleterious(0.554)	NULL
GPR85	54329	genome.wustl.edu	37	7	112724393	112724393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018970.6	-1	validated	p.F128L	1.000	135	0%	67	29.9%	-	-	possibly_damaging(0.729)	tolerated(0.17)	neutral(0.325)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP1R3A	5506	genome.wustl.edu	37	7	113520138	113520138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002711.3	-1	reviewed	p.D337Y	1.000	455	0%	187	31.6%	-	-	benign(0.099)	tolerated(0.13)	neutral(0.260)	NULL
FOXP2	93986	genome.wustl.edu	37	7	114066688	114066688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148898.2	+1	reviewed	p.S41N	1.000	149	0%	80	45%	-	-	probably_damaging(0.978)	tolerated(0.42)	neutral(0.434)	NULL
FOXP2	93986	genome.wustl.edu	37	7	114282659	114282659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148898.2	+1	reviewed	p.L349I	1.000	265	0%	133	29.3%	-	-	possibly_damaging(0.926)	tolerated(0.18)	neutral(0.430)	NULL
TES	26136	genome.wustl.edu	37	7	115889084	115889084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015641.2	+1	reviewed	p.R42C	1.000	108	0.9%	50	34%	-	-	benign(0.07)	deleterious(0.04)	neutral(0.354)	NULL
MET	4233	genome.wustl.edu	37	7	116340047	116340047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127500.1	+1	reviewed	p.K303N	0.993	112	0%	73	26%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CAPZA2	830	genome.wustl.edu	37	7	116544243	116544243	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006136.2	+1	reviewed	p.E78*	1.000	308	0.3%	150	28.7%	-	-	-	-	-	HMMPfam_F-actin_cap_A,superfamily_Subunits of heterodimeric actin filament capping protein Capz
CAPZA2	830	genome.wustl.edu	37	7	116546389	116546389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006136.2	+1	reviewed	p.N167H	1.000	313	0%	182	39%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_F-actin_cap_A,superfamily_Subunits of heterodimeric actin filament capping protein Capz
ST7	7982	genome.wustl.edu	37	7	116859143	116859143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021908.2	+1	reviewed	p.R471W	1.000	297	0.3%	143	35.7%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_ST7
ST7	7982	genome.wustl.edu	37	7	116870095	116870095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000490039	+1	known	p.S541Y	1.000	19	0%	11	45.5%	-	-	unknown(0)	-	-	NULL
WNT2	7472	genome.wustl.edu	37	7	116918236	116918236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003391.2	-1	reviewed	p.K352N	0.995	254	0%	139	41%	-	-	benign(0.196)	deleterious(0)	neutral(0.463)	NULL
CTTNBP2	83992	genome.wustl.edu	37	7	117431991	117431991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033427.2	-1	reviewed	p.S420L	0.001	558	0%	267	17.6%	-	-	benign(0.309)	tolerated(0.22)	neutral(0.139)	HMMPfam_CortBP2
NAA38	51691	genome.wustl.edu	37	7	117831991	117831991	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016200.4	+1	reviewed	p.E76*	1.000	312	0%	123	42.3%	-	-	-	-	-	superfamily_Sm-like ribonucleoproteins
KCND2	3751	genome.wustl.edu	37	7	119915440	119915440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.P252S	1.000	345	0%	202	40.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
C7orf58	79974	genome.wustl.edu	37	7	120767275	120767275	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024913.4	+1	validated	p.E422	1.000	360	0%	166	39.2%	-	-	-	-	-	NULL
C7orf58	79974	genome.wustl.edu	37	7	120911452	120911452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024913.4	+1	validated	p.L946I	1.000	564	0%	251	35.9%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
WNT16	51384	genome.wustl.edu	37	7	120979026	120979026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057168.1	+1	reviewed	p.F242C	1.000	246	0%	84	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_SM00097
PTPRZ1	5803	genome.wustl.edu	37	7	121612700	121612700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.S137F	1.000	283	0%	121	28.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRZ1	5803	genome.wustl.edu	37	7	121623766	121623766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.N223H	1.000	266	0%	150	38.7%	-	-	possibly_damaging(0.847)	deleterious(0.02)	deleterious(0.708)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRZ1	5803	genome.wustl.edu	37	7	121651730	121651730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.S877Y	1.000	236	0%	176	38.1%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121651802	121651802	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.K901I	0.998	297	0%	184	30.4%	-	-	possibly_damaging(0.708)	deleterious(0)	deleterious(0.700)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652468	121652468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.F1123C	0.990	268	0%	192	37%	-	-	possibly_damaging(0.716)	deleterious(0)	deleterious(0.704)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121682775	121682775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.R1972I	1.000	253	0%	104	38.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
AASS	10157	genome.wustl.edu	37	7	121769475	121769475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005763.3	-1	reviewed	p.F109L	1.000	295	0%	96	40.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AlaDh_PNT_N,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
AASS	10157	genome.wustl.edu	37	7	121773640	121773640	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005763.3	-1	reviewed	p.I47	1.000	295	0%	160	34.4%	-	-	-	-	-	HMMPfam_AlaDh_PNT_N,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
CADPS2	93664	genome.wustl.edu	37	7	121960374	121960374	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017954.10	-1	reviewed	p.R1246*	1.000	321	0%	183	23.5%	-	-	-	-	-	NULL
CADPS2	93664	genome.wustl.edu	37	7	122078450	122078450	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397721	-1	known	p.R453*	0.225	445	0%	221	31.7%	-	-	-	-	-	HMMPfam_DUF1041
RNF148	378925	genome.wustl.edu	37	7	122342489	122342489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198085.1	-1	validated	p.E106K	1.000	293	0.7%	179	40.8%	-	-	benign(0.031)	tolerated(0.41)	neutral(0.017)	HMMPfam_PA,superfamily_SSF52025
RNF148	378925	genome.wustl.edu	37	7	122342775	122342775	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198085.1	-1	validated	p.T10	0.000	99	0%	48	29.2%	-	-	-	-	-	NULL
CADPS2	93664	genome.wustl.edu	37	7	122526173	122526173	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017954.10	-1	reviewed	p.R73	0.999	25	0%	19	36.8%	-	-	-	-	-	NULL
TAS2R16	50833	genome.wustl.edu	37	7	122635291	122635291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016945.2	-1	reviewed	p.S133Y	0.000	351	0%	182	40.7%	-	-	benign(0.033)	deleterious(0)	neutral(0.446)	HMMPfam_TAS2R
SLC13A1	6561	genome.wustl.edu	37	7	122808570	122808570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022444.3	-1	validated	p.K200T	0.968	373	0%	166	34.3%	-	-	benign(0.086)	tolerated(0.06)	neutral(0.329)	HMMPfam_Na_sulph_symp
SLC13A1	6561	genome.wustl.edu	37	7	122809211	122809211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022444.3	-1	validated	p.E182*	1.000	365	0%	217	34.1%	-	-	-	-	-	HMMPfam_Na_sulph_symp
IQUB	154865	genome.wustl.edu	37	7	123143416	123143416	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178827.4	-1	validated	p.G178	0.201	84	0%	40	37.5%	-	-	-	-	-	HMMPfam_DUF2021,superfamily_Ubiquitin-like
IQUB	154865	genome.wustl.edu	37	7	123152025	123152025	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178827.4	-1	validated	p.E124*	0.000	144	0%	98	15.3%	-	-	-	-	-	HMMPfam_DUF2021
LMOD2	442721	genome.wustl.edu	37	7	123302797	123302797	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207163.1	+1	validated	p.S386T	0.554	154	0%	73	32.9%	-	-	benign(0.009)	tolerated(0.44)	neutral(0.013)	NULL
HYAL4	23553	genome.wustl.edu	37	7	123517196	123517196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012269.2	+1	reviewed	p.S478I	0.000	182	0%	101	30.7%	-	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
ZNF800	168850	genome.wustl.edu	37	7	127014333	127014333	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000265827	-1	known	p.E353*	1.000	159	0%	98	34.7%	-	-	-	-	-	NULL
GCC1	79571	genome.wustl.edu	37	7	127224251	127224251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024523.5	-1	reviewed	p.R329H	0.053	156	0%	119	41.2%	-	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
ARF5	381	genome.wustl.edu	37	7	127231348	127231348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001662.2	+1	reviewed	p.R180C	1.000	65	0%	53	34%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SM00175,HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases
PAX4	5078	genome.wustl.edu	37	7	127253851	127253851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006193.2	-1	reviewed	p.R166L	1.000	117	0%	88	31.8%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
RBM28	55131	genome.wustl.edu	37	7	127958146	127958146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018077.2	-1	reviewed	p.R526Q	1.000	163	0%	88	20.5%	-	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMSmart_RRM,superfamily_SSF54928
RBM28	55131	genome.wustl.edu	37	7	127963638	127963638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018077.2	-1	reviewed	p.R449H	1.000	353	0%	219	14.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PRRT4	401399	genome.wustl.edu	37	7	127999813	127999813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114726.2	-1	validated	p.S78Y	0.024	93	0%	55	32.7%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
CALU	813	genome.wustl.edu	37	7	128399845	128399845	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130674.1	+1	reviewed	e4-1	1.000	369	0%	158	12.7%	-	-	-	-	-	-
CCDC136	64753	genome.wustl.edu	37	7	128441539	128441539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022742.3	+1	validated	p.L216I	0.003	122	0%	73	28.8%	-	-	benign(0.047)	tolerated(0.34)	neutral(0.026)	NULL
FLNC	2318	genome.wustl.edu	37	7	128488867	128488867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.K1586N	1.000	105	0%	101	32.7%	-	-	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128492998	128492998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.A2041T	1.000	51	0%	28	28.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128498514	128498514	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.I2705	1.000	191	0%	123	39%	-	-	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
TNPO3	23534	genome.wustl.edu	37	7	128641153	128641153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012470.2	-1	validated	p.T278A	1.000	188	0%	124	41.1%	-	-	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_ARM repeat
AHCYL2	23382	genome.wustl.edu	37	7	129019561	129019561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015328.2	+1	validated	p.S149Y	1.000	219	0.9%	149	10.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENSG00000245606	0	genome.wustl.edu	37	7	130008546	130008546	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501661	-1	known	NULL	0.005	76	0%	39	48.7%	-	-	-	-	-	-
TSGA13	114960	genome.wustl.edu	37	7	130357610	130357610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052933.2	-1	provisional	p.S165L	0.000	460	0%	236	36.9%	-	-	benign(0.001)	tolerated(1)	-	NULL
PLXNA4	91584	genome.wustl.edu	37	7	132192604	132192604	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.L283	0.011	100	0%	64	37.5%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA4	91584	genome.wustl.edu	37	7	132192874	132192874	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.P193	0.012	128	0%	119	34.5%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
ENSG00000232856	0	genome.wustl.edu	37	7	132719526	132719526	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448615	-1	known	p.P154	0.951	134	0%	60	31.7%	-	-	-	-	-	superfamily_eEF1-gamma domain
LRGUK	136332	genome.wustl.edu	37	7	133933768	133933768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144648.1	+1	provisional	p.K713T	0.000	348	0%	145	16.6%	-	-	possibly_damaging(0.777)	deleterious(0)	deleterious(0.734)	NULL
BPGM	669	genome.wustl.edu	37	7	134346694	134346694	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001724.4	+1	reviewed	p.C145	0.040	89	0%	53	35.8%	-	-	-	-	-	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
CALD1	800	genome.wustl.edu	37	7	134644831	134644831	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033138.3	+1	reviewed	p.S723*	0.094	237	0%	184	37%	-	-	-	-	-	HMMPfam_Caldesmon
AGBL3	340351	genome.wustl.edu	37	7	134719166	134719166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178563.3	+1	provisional	p.R275H	0.569	225	0%	112	38.4%	-	-	benign(0.013)	tolerated(0.23)	neutral(0.042)	NULL
AGBL3	340351	genome.wustl.edu	37	7	134730568	134730568	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178563.3	+1	provisional	p.E583*	1.000	209	0%	87	44.8%	-	-	-	-	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135307642	135307642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015135.2	+1	validated	p.R1483Q	1.000	199	0%	84	36.9%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
FAM180A	389558	genome.wustl.edu	37	7	135418931	135418931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205855.3	-1	validated	p.R105H	0.986	145	0%	89	25.8%	-	-	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	NULL
CHRM2	1129	genome.wustl.edu	37	7	136701002	136701002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000739.2	+1	reviewed	p.A464T	0.997	328	0%	201	41.8%	-	-	benign(0)	tolerated(1)	-	NULL
DGKI	9162	genome.wustl.edu	37	7	137076040	137076040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004717.2	-1	reviewed	p.D1042Y	0.995	223	0%	113	38.1%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_ANK
DGKI	9162	genome.wustl.edu	37	7	137172427	137172427	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004717.2	-1	reviewed	p.L771	0.996	218	0%	78	11.5%	-	-	-	-	-	NULL
CREB3L2	64764	genome.wustl.edu	37	7	137593044	137593044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194071.2	-1	validated	p.R241Q	0.999	90	0%	48	47.9%	-	-	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	NULL
SVOPL	136306	genome.wustl.edu	37	7	138341226	138341226	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139456.1	-1	validated	p.T167	0.917	243	0%	102	40.2%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ATP6V0A4	50617	genome.wustl.edu	37	7	138391420	138391420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020632.2	-1	reviewed	p.K824N	1.000	117	0%	58	36.2%	-	-	benign(0.258)	tolerated(0.26)	neutral(0.061)	HMMPfam_V_ATPase_I
ATP6V0A4	50617	genome.wustl.edu	37	7	138430005	138430005	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020632.2	-1	reviewed	p.H447	0.005	355	0%	166	33.7%	-	-	-	-	-	HMMPfam_V_ATPase_I
ATP6V0A4	50617	genome.wustl.edu	37	7	138440445	138440445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020632.2	-1	reviewed	p.D269Y	1.000	482	0%	317	36.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V_ATPase_I
ATP6V0A4	50617	genome.wustl.edu	37	7	138455906	138455906	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020632.2	-1	reviewed	p.L29	0.692	177	0.6%	70	11.4%	-	-	-	-	-	HMMPfam_V_ATPase_I
KIAA1549	57670	genome.wustl.edu	37	7	138602434	138602434	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020910.2	-1	validated	p.A596	0.000	149	0%	60	35%	-	-	-	-	-	NULL
ZC3HAV1	56829	genome.wustl.edu	37	7	138764767	138764767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020119.3	-1	reviewed	p.R307Q	0.000	76	0%	65	32.3%	-	-	benign(0.022)	tolerated(0.89)	neutral(0.001)	NULL
ZC3HAV1	56829	genome.wustl.edu	37	7	138793841	138793841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020119.3	-1	reviewed	p.Q79H	0.000	61	0%	45	48.9%	-	-	possibly_damaging(0.708)	tolerated(0.09)	deleterious(0.552)	NULL
UBN2	254048	genome.wustl.edu	37	7	138968416	138968416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173569.3	+1	validated	p.S839L	0.983	242	0%	151	21.2%	-	-	benign(0.248)	deleterious(0.04)	neutral(0.374)	NULL
PARP12	64761	genome.wustl.edu	37	7	139757800	139757800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022750.2	-1	provisional	p.E121K	0.000	326	0%	162	29.6%	-	-	benign(0.014)	tolerated(0.81)	neutral(0.001)	NULL
SLC37A3	84255	genome.wustl.edu	37	7	140048552	140048552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207113.1	-1	validated	p.A300T	1.000	226	0%	102	29.4%	-	-	probably_damaging(0.993)	tolerated(0.06)	deleterious(0.772)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RAB19	401409	genome.wustl.edu	37	7	140110810	140110810	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008749.2	+1	validated	p.Q80P	0.000	183	0%	87	21.8%	-	-	unknown(0)	tolerated(1)	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
DENND2A	27147	genome.wustl.edu	37	7	140301451	140301451	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015689.3	-1	validated	p.N249	0.945	87	0%	40	32.5%	-	-	-	-	-	NULL
WEE2	494551	genome.wustl.edu	37	7	141414107	141414107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105558.1	+1	validated	p.M147I	0.091	187	0%	105	39%	-	-	benign(0.055)	tolerated(0.42)	neutral(0.018)	NULL
SSBP1	6742	genome.wustl.edu	37	7	141445301	141445301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003143.1	+1	validated	p.R107Q	1.000	340	0.3%	155	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSB,superfamily_Nucleic acid-binding proteins
TAS2R4	50832	genome.wustl.edu	37	7	141478495	141478495	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016944.1	+1	reviewed	p.F69	0.002	547	0%	337	35.3%	-	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R5	54429	genome.wustl.edu	37	7	141490821	141490821	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018980.2	+1	reviewed	p.A220	0.502	430	0%	280	36.1%	-	-	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
CLEC5A	23601	genome.wustl.edu	37	7	141643763	141643763	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013252.2	-1	reviewed	p.V47	0.675	402	0%	198	33.8%	-	-	-	-	-	NULL
MGAM	8972	genome.wustl.edu	37	7	141726933	141726933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.A334V	0.293	202	0%	89	46.1%	-	-	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
MGAM	8972	genome.wustl.edu	37	7	141740522	141740522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.G792R	1.000	285	0%	147	39.5%	-	-	probably_damaging(0.977)	tolerated(0.45)	neutral(0.431)	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141752128	141752128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.G947E	1.000	218	0%	117	35%	-	-	probably_damaging(0.982)	tolerated(0.25)	neutral(0.463)	NULL
MGAM	8972	genome.wustl.edu	37	7	141752137	141752137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.Y950C	0.872	212	0%	112	36.6%	-	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
MGAM	8972	genome.wustl.edu	37	7	141758039	141758039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.L1244M	1.000	455	0%	241	34.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141764306	141764306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.T1490A	1.000	59	0%	55	27.3%	-	-	benign(0.005)	tolerated(0.99)	-	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141773910	141773910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000475668	+1	known	p.I1739V	0.991	194	0%	98	31.6%	-	-	benign(0)	tolerated(1)	-	NULL
TRBV2	28620	genome.wustl.edu	37	7	142001106	142001106	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455382	+1	known	p.V33	0.005	128	0%	70	38.6%	-	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TRBV7-1	28597	genome.wustl.edu	37	7	142032279	142032279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390354	+1	known	p.K33N	0.000	30	0%	15	26.7%	-	-	benign(0.049)	tolerated(0.45)	neutral(0.015)	HMMPfam_V-set,superfamily_SSF48726
TRBV4-2	28616	genome.wustl.edu	37	7	142045661	142045661	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390392	+1	known	p.E63	0.008	293	0%	139	43.2%	-	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBC2	28638	genome.wustl.edu	37	7	142498941	142498941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000466254	+1	known	p.D73Y	0.000	140	0%	102	18.6%	-	-	benign(0.139)	deleterious(0.03)	neutral(0.377)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
EPHB6	2051	genome.wustl.edu	37	7	142561892	142561892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004445.3	+1	reviewed	p.R112W	0.999	24	4.2%	21	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
EPHB6	2051	genome.wustl.edu	37	7	142566058	142566058	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004445.3	+1	reviewed	p.E660*	1.000	179	0%	101	22.8%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
KEL	3792	genome.wustl.edu	37	7	142655056	142655056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000420.2	-1	reviewed	p.G177E	1.000	184	0%	96	28.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
KEL	3792	genome.wustl.edu	37	7	142658106	142658106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000420.2	-1	reviewed	p.F103L	1.000	255	0%	129	41.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
GSTK1	373156	genome.wustl.edu	37	7	142965912	142965912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442394	+1	known	p.P190L	0.000	245	0%	98	29.6%	-	-	probably_damaging(0.997)	-	-	NULL
TMEM139	135932	genome.wustl.edu	37	7	142983089	142983089	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153345.1	+1	provisional	p.P13	0.002	323	0%	224	37.1%	-	-	-	-	-	NULL
CLCN1	1180	genome.wustl.edu	37	7	143018867	143018867	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000083.2	+1	reviewed	p.T208S	1.000	117	0%	76	32.9%	-	-	benign(0.038)	tolerated(0.32)	neutral(0.026)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
CLCN1	1180	genome.wustl.edu	37	7	143028394	143028394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000083.2	+1	reviewed	p.A350V	1.000	422	0%	255	38.4%	-	-	benign(0.102)	tolerated(1)	neutral(0.008)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
FAM131B	9715	genome.wustl.edu	37	7	143054075	143054075	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031690.2	-1	validated	p.S217	1.000	62	0%	45	31.1%	-	-	-	-	-	NULL
EPHA1	2041	genome.wustl.edu	37	7	143092412	143092412	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005232.4	-1	reviewed	p.R695*	0.993	177	0%	119	35.3%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
OR2A5	393046	genome.wustl.edu	37	7	143747678	143747678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012365.1	+1	provisional	p.L62I	0.962	330	0%	192	37.5%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A42	402317	genome.wustl.edu	37	7	143929609	143929609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001802.1	-1	provisional	p.E104K	0.008	310	0%	174	9.2%	-	-	possibly_damaging(0.815)	deleterious(0)	deleterious(0.752)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ARHGEF5	7984	genome.wustl.edu	37	7	144060593	144060593	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005435.3	+1	reviewed	p.E277	0.208	2243	0%	1060	12.8%	-	-	-	-	-	NULL
ARHGEF5	7984	genome.wustl.edu	37	7	144069479	144069479	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005435.3	+1	reviewed	p.I1311M	0.962	1030	0%	632	9.8%	-	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1
NOBOX	135935	genome.wustl.edu	37	7	144095652	144095652	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000467773	-1	known	p.Y499	0.019	156	0%	69	27.5%	-	-	-	-	-	NULL
NOBOX	135935	genome.wustl.edu	37	7	144098384	144098384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080413.2	-1	provisional	p.S200Y	0.001	175	0%	93	34.4%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
CNTNAP2	26047	genome.wustl.edu	37	7	147092834	147092834	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.F544	0.997	193	0%	106	20.8%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
EZH2	2146	genome.wustl.edu	37	7	148506427	148506427	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004456.3	-1	reviewed	p.S695	0.809	199	0%	123	31.7%	-	-	-	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
PDIA4	9601	genome.wustl.edu	37	7	148701059	148701059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004911.4	-1	validated	p.D589N	1.000	271	0%	169	39.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
ZNF786	136051	genome.wustl.edu	37	7	148777796	148777796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152411.3	-1	validated	p.F11S	1.000	213	0.5%	126	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF425	155054	genome.wustl.edu	37	7	148815348	148815348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001661.2	-1	validated	p.E37D	0.966	678	0.3%	351	33.6%	-	-	possibly_damaging(0.432)	deleterious(0)	deleterious(0.585)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF212	7988	genome.wustl.edu	37	7	148947257	148947257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012256.2	+1	reviewed	p.R11I	1.000	138	0%	69	31.9%	-	-	benign(0.047)	tolerated(0.11)	neutral(0.275)	NULL
ZNF212	7988	genome.wustl.edu	37	7	148951483	148951483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012256.2	+1	reviewed	p.G489R	0.003	40	0%	40	40%	-	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	NULL
SSPO	23145	genome.wustl.edu	37	7	149477936	149477936	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.D569	0.891	90	0%	63	36.5%	-	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216,HMMSmart_SM00215
SSPO	23145	genome.wustl.edu	37	7	149505650	149505650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.R3010Q	1.000	40	0%	43	32.6%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ZNF862	643641	genome.wustl.edu	37	7	149559177	149559177	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099220.1	+1	provisional	p.F976	0.014	60	0%	44	38.6%	-	-	-	-	-	NULL
REPIN1	29803	genome.wustl.edu	37	7	150066870	150066870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099695.1	+1	validated	p.S24G	1.000	154	0%	89	14.6%	-	-	benign(0.227)	deleterious(0)	neutral(0.467)	NULL
ZNF775	285971	genome.wustl.edu	37	7	150095166	150095166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173680.3	+1	validated	p.K533E	0.015	12	0.000	9	0.444	-	-	benign(0.045)	tolerated(1)	neutral(0.003)	NULL
GIMAP8	155038	genome.wustl.edu	37	7	150167935	150167935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175571.2	+1	reviewed	p.A219T	0.000	428	0%	202	35.1%	-	-	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
GIMAP8	155038	genome.wustl.edu	37	7	150174548	150174548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175571.2	+1	reviewed	p.A560T	0.000	203	0%	93	39.8%	-	-	benign(0)	tolerated(1)	-	HMMPfam_AIG1,superfamily_SSF52540
NOS3	4846	genome.wustl.edu	37	7	150710902	150710902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000603.4	+1	reviewed	p.D1116N	0.998	26	0%	21	47.6%	-	-	possibly_damaging(0.493)	deleterious(0.03)	deleterious(0.529)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
ASIC3	9311	genome.wustl.edu	37	7	150748162	150748162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020321.2	+1	reviewed	p.N349S	1.000	48	0%	30	36.7%	-	-	benign(0.01)	deleterious(0.02)	neutral(0.384)	HMMPfam_ASC
SLC4A2	6522	genome.wustl.edu	37	7	150765124	150765124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003040.3	+1	validated	p.R377H	1.000	59	0%	45	37.8%	-	-	possibly_damaging(0.937)	deleterious(0.04)	deleterious(0.732)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A2	6522	genome.wustl.edu	37	7	150771785	150771785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003040.3	+1	validated	p.F968L	1.000	105	0%	74	36.5%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_HCO3_cotransp
AGAP3	116988	genome.wustl.edu	37	7	150840570	150840570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031946.4	+1	validated	p.A806S	1.000	132	0%	115	37.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Ankyrin repeat
ASB10	136371	genome.wustl.edu	37	7	150883726	150883726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142459.1	-1	reviewed	p.E158K	0.983	23	0%	16	43.8%	-	-	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	superfamily_Ankyrin repeat
CHPF2	54480	genome.wustl.edu	37	7	150933659	150933659	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019015.1	+1	provisional	p.E332*	0.969	75	0%	55	10.9%	-	-	-	-	-	HMMPfam_CHGN
SMARCD3	6604	genome.wustl.edu	37	7	150939621	150939621	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003801.1	-1	reviewed	p.S175	0.371	164	0%	103	38.8%	-	-	-	-	-	NULL
WDR86	349136	genome.wustl.edu	37	7	151079030	151079030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341363	-1	known	p.R322*	0.898	26	0%	14	28.6%	-	-	-	-	-	NULL
GALNTL5	168391	genome.wustl.edu	37	7	151699941	151699941	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145292.3	+1	validated	p.K267	0.000	417	0%	208	28.4%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151836804	151836804	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.R4806*	1.000	380	0%	251	33.9%	-	-	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MLL3	58508	genome.wustl.edu	37	7	151843690	151843690	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360104	-1	known	p.G2236R	0.017	131	0%	62	14.5%	-	-	-	-	-	HMMPfam_FYRC,HMMSmart_SM00542
MLL3	58508	genome.wustl.edu	37	7	151873823	151873823	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360104	-1	known	p.N411D	0.000	298	0%	185	35.7%	-	-	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151877000	151877000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.R2454K	1.000	325	0%	156	39.7%	-	-	possibly_damaging(0.95)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151877808	151877808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.E2379D	1.000	169	0%	81	24.7%	-	-	probably_damaging(0.98)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151880125	151880125	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.S1733	0.654	398	0%	239	36.4%	-	-	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151880129	151880129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.D1732G	1.000	398	0%	241	40.2%	-	-	probably_damaging(0.999)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151945686	151945686	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416955	-1	known	p.*151L	0.021	48	0%	51	23.5%	-	-	-	-	-	NULL
PAXIP1	22976	genome.wustl.edu	37	7	154767529	154767529	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007349.3	-1	reviewed	p.Q317H	0.079	178	0%	122	27.9%	-	-	unknown(0)	tolerated(0.68)	-	NULL
CNPY1	285888	genome.wustl.edu	37	7	155299793	155299793	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103176.1	-1	validated	p.E55*	1.000	271	0%	173	32.4%	-	-	-	-	-	NULL
CNPY1	285888	genome.wustl.edu	37	7	155301726	155301726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103176.1	-1	validated	p.D3N	1.000	76	0%	47	12.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SHH	6469	genome.wustl.edu	37	7	155599049	155599049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000193.2	-1	reviewed	p.A168V	1.000	57	0%	49	42.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_HH_signal,superfamily_Hedgehog_sig_N
RNF32	140545	genome.wustl.edu	37	7	156437373	156437373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030936.2	+1	reviewed	p.K66Q	0.452	172	0%	72	22.2%	-	-	possibly_damaging(0.801)	tolerated(0.17)	neutral(0.360)	NULL
DNAJB6	10049	genome.wustl.edu	37	7	157178242	157178242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058246.3	+1	reviewed	p.E210K	1.000	214	0%	62	17.7%	-	-	unknown(0)	deleterious(0)	-	NULL
PTPRN2	5799	genome.wustl.edu	37	7	157396768	157396768	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002847.3	-1	reviewed	e16-1	1.000	95	0%	40	20%	-	-	-	-	-	-
PTPRN2	5799	genome.wustl.edu	37	7	157414109	157414109	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002847.3	-1	reviewed	p.F763	0.094	92	0%	53	30.2%	-	-	-	-	-	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ENSG00000186921	0	genome.wustl.edu	37	7	158415126	158415126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335132	-1	known	p.K182N	0.999	241	0%	136	33.1%	-	-	-	-	-	NULL
ESYT2	57488	genome.wustl.edu	37	7	158534274	158534274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020728.2	-1	validated	p.S730L	1.000	117	0%	86	32.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
WDR60	55112	genome.wustl.edu	37	7	158704342	158704342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018051.4	+1	validated	p.R521I	1.000	263	0%	120	15.8%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_WD40 repeat-like
VIPR2	7434	genome.wustl.edu	37	7	158829478	158829478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003382.4	-1	validated	p.R238I	0.001	100	0%	65	36.9%	-	-	benign(0.082)	deleterious(0)	neutral(0.451)	HMMPfam_7tm_2,superfamily_SSF81321
VIPR2	7434	genome.wustl.edu	37	7	158896490	158896490	+	Silent	SNP	G	G	A	rs186398445	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418475	-1	known	p.R101C	0.855	233	0%	178	32.6%	-	-	-	-	-	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793)
ZNF596	169270	genome.wustl.edu	37	8	195563	195563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042415.1	+1	validated	p.R239Q	0.536	119	0%	118	57.6%	-	-	probably_damaging(0.999)	tolerated(0.77)	deleterious(0.491)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
CLN8	2055	genome.wustl.edu	37	8	1719307	1719307	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018941.3	+1	reviewed	p.V29	0.000	287	0%	194	28.9%	-	-	-	-	-	NULL
ARHGEF10	9639	genome.wustl.edu	37	8	1808126	1808126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.P86L	0.008	122	0%	98	19.4%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
ARHGEF10	9639	genome.wustl.edu	37	8	1846620	1846620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.D527N	1.000	125	0%	94	13.8%	-	-	possibly_damaging(0.757)	deleterious(0.02)	deleterious(0.663)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
MYOM2	9172	genome.wustl.edu	37	8	2063813	2063813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.S1081I	0.979	605	0%	326	19.9%	-	-	benign(0.054)	deleterious(0.02)	neutral(0.387)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2092608	2092608	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.T1367	0.012	131	0%	62	14.5%	-	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CSMD1	64478	genome.wustl.edu	37	8	2820132	2820132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.A3163T	0.873	116	0%	68	52.9%	-	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	2886844	2886844	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.R2619*	0.126	394	0%	256	26.6%	-	-	-	-	-	NULL
CSMD1	64478	genome.wustl.edu	37	8	3047537	3047537	+	Silent	SNP	G	G	A	rs192606706	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.F1766	0.958	208	0%	202	25.7%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
DEFA4	1669	genome.wustl.edu	37	8	6793542	6793542	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001925.1	-1	reviewed	p.*98	0.001	127	0%	110	50.9%	-	-	-	-	-	NULL
PPP1R3B	79660	genome.wustl.edu	37	8	8999144	8999144	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024607.2	-1	validated	p.I6	0.026	63	0%	56	51.8%	-	-	-	-	-	NULL
TNKS	8658	genome.wustl.edu	37	8	9622298	9622298	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003747.2	+1	validated	p.R1149*	1.000	368	0%	241	19.9%	-	-	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
PRSS55	203074	genome.wustl.edu	37	8	10387128	10387128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198464.2	+1	validated	p.S89T	0.001	321	0%	239	49.4%	-	-	possibly_damaging(0.556)	tolerated(0.13)	neutral(0.442)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RP1L1	94137	genome.wustl.edu	37	8	10465434	10465434	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178857.5	-1	validated	p.P2058	0.000	716	0.1%	595	12.9%	-	-	-	-	-	HMMPfam_S-antigen
RP1L1	94137	genome.wustl.edu	37	8	10480477	10480477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178857.5	-1	validated	p.R79C	1.000	43	0%	37	29.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DCX,superfamily_SSF89837
SOX7	83595	genome.wustl.edu	37	8	10587788	10587788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031439.2	-1	reviewed	p.F52L	1.000	22	0%	22	18.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
MTMR9	66036	genome.wustl.edu	37	8	11152750	11152750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015458.3	+1	reviewed	p.R77Q	1.000	304	0%	132	49.2%	-	-	benign(0.236)	tolerated(0.34)	neutral(0.046)	superfamily_SSF50729
MTMR9	66036	genome.wustl.edu	37	8	11174293	11174293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015458.3	+1	reviewed	p.R409C	1.000	268	0.4%	167	18%	-	-	probably_damaging(0.992)	tolerated(0.17)	deleterious(0.506)	superfamily_SSF52799
GATA4	2626	genome.wustl.edu	37	8	11615887	11615887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002052.3	+1	reviewed	p.A411V	0.001	129	0%	138	25.4%	-	-	benign(0.009)	tolerated(0.5)	neutral(0.011)	NULL
OR7E8P	346708	genome.wustl.edu	37	8	12541913	12541913	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000317826	-1	known	p.G258	0.010	266	0%	190	22.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR7E8P	346708	genome.wustl.edu	37	8	12542102	12542102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000317826	-1	known	p.K195N	0.003	454	0%	293	21.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LONRF1	91694	genome.wustl.edu	37	8	12594230	12594230	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152271.3	-1	provisional	p.F477	1.000	214	0%	99	12.1%	-	-	-	-	-	superfamily_RING/U-box
DLC1	10395	genome.wustl.edu	37	8	12952331	12952331	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182643.2	-1	reviewed	p.R1155*	1.000	147	0%	156	31.4%	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
DLC1	10395	genome.wustl.edu	37	8	13251135	13251135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182643.2	-1	reviewed	p.S414Y	0.776	236	0%	192	51%	-	-	probably_damaging(0.991)	tolerated(0.9)	neutral(0.444)	NULL
SGCZ	137868	genome.wustl.edu	37	8	14181619	14181619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139167.2	-1	reviewed	p.S110Y	1.000	272	0%	198	25.8%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Sarcoglycan_1
MSR1	4481	genome.wustl.edu	37	8	16026308	16026308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138715.2	-1	reviewed	p.L97F	0.002	711	0%	508	20.1%	-	-	probably_damaging(0.984)	tolerated(0.28)	neutral(0.462)	NULL
MTMR7	9108	genome.wustl.edu	37	8	17163467	17163467	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004686.4	-1	reviewed	e11-1	1.000	143	0%	121	14%	-	-	-	-	-	-
MTMR7	9108	genome.wustl.edu	37	8	17206542	17206542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004686.4	-1	reviewed	p.A173T	0.986	220	0%	148	23.6%	-	-	benign(0.018)	tolerated(0.73)	neutral(0.002)	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
MTMR7	9108	genome.wustl.edu	37	8	17218733	17218733	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004686.4	-1	reviewed	p.E121*	1.000	466	0.2%	384	13.8%	-	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
MTUS1	57509	genome.wustl.edu	37	8	17581252	17581252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001924.2	-1	reviewed	p.A793V	0.000	320	0%	267	26.2%	-	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
MTUS1	57509	genome.wustl.edu	37	8	17612117	17612117	+	Silent	SNP	C	C	T	rs184944081	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001924.2	-1	reviewed	p.P400	0.000	326	0%	233	27%	-	-	-	-	-	NULL
PCM1	5108	genome.wustl.edu	37	8	17851108	17851108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006197.3	+1	validated	p.E1603*	1.000	320	0%	132	49.2%	-	-	-	-	-	NULL
NAT1	9	genome.wustl.edu	37	8	18079582	18079582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000662.5	+1	reviewed	p.R9I	1.000	329	0.3%	261	54.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF54001
PSD3	23362	genome.wustl.edu	37	8	18729298	18729298	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015310.3	-1	validated	p.N359T	0.000	385	0%	352	17.3%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
PSD3	23362	genome.wustl.edu	37	8	18793598	18793598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015310.3	-1	validated	p.K26E	1.000	235	0%	161	55.3%	-	-	unknown(0)	deleterious(0)	-	NULL
CSGALNACT1	55790	genome.wustl.edu	37	8	19277979	19277979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130518.1	-1	validated	p.S335Y	1.000	141	0%	111	27%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CHGN,superfamily_SSF53448
CSGALNACT1	55790	genome.wustl.edu	37	8	19316061	19316061	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130518.1	-1	validated	p.R243*	1.000	550	0.2%	427	54.1%	-	-	-	-	-	HMMPfam_CHGN,superfamily_SSF53448
CSGALNACT1	55790	genome.wustl.edu	37	8	19363408	19363408	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024040.1	-1	validated	NULL	0.700	83	0%	56	46.4%	-	-	-	-	-	-
INTS10	55174	genome.wustl.edu	37	8	19687926	19687926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018142.2	+1	validated	p.D384N	0.998	170	0%	131	53.4%	-	-	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
INTS10	55174	genome.wustl.edu	37	8	19703277	19703277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018142.2	+1	validated	p.E649*	1.000	348	0.3%	212	23.6%	-	-	-	-	-	NULL
LPL	4023	genome.wustl.edu	37	8	19818442	19818442	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311322	+1	known	p.S390	0.961	227	0%	147	10.2%	-	-	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
DOK2	9046	genome.wustl.edu	37	8	21768323	21768323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003974.2	-1	reviewed	p.A160D	1.000	149	0%	99	20.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
XPO7	23039	genome.wustl.edu	37	8	21827087	21827087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100161.1	+1	validated	p.R87W	1.000	408	0%	297	27.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IBN_N,superfamily_ARM repeat
BMP1	649	genome.wustl.edu	37	8	22052051	22052051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006129.4	+1	reviewed	p.R464L	1.000	243	0%	242	54.5%	-	-	benign(0.005)	tolerated(0.18)	neutral(0.056)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PPP3CC	5533	genome.wustl.edu	37	8	22398143	22398143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005605.3	+1	provisional	p.S456L	0.998	282	0%	202	31.7%	-	-	benign(0.283)	tolerated(0.05)	neutral(0.432)	superfamily_SSF56300
KIAA1967	57805	genome.wustl.edu	37	8	22474981	22474981	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.E632*	0.993	560	0.2%	358	26.5%	-	-	-	-	-	NULL
CHMP7	91782	genome.wustl.edu	37	8	23106860	23106860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152272.3	+1	validated	p.A146D	0.366	114	0%	77	24.7%	-	-	unknown(0)	tolerated(0.36)	-	NULL
SLC25A37	51312	genome.wustl.edu	37	8	23386679	23386679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016612.2	+1	provisional	p.A55V	1.000	40	0%	26	23.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
STC1	6781	genome.wustl.edu	37	8	23709781	23709781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003155.2	-1	reviewed	p.Y79H	1.000	259	0%	180	21.1%	-	-	benign(0.032)	tolerated(1)	neutral(0.002)	HMMPfam_Stanniocalcin
ADAMDEC1	27299	genome.wustl.edu	37	8	24254941	24254941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014479.3	+1	validated	p.R200Q	0.419	258	0%	136	27.2%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ADAM7	8756	genome.wustl.edu	37	8	24300065	24300065	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380789	+1	known	p.G44	0.000	340	0%	219	18.7%	-	-	-	-	-	HMMPfam_Pep_M12B_propep
NEFM	4741	genome.wustl.edu	37	8	24773148	24773148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005382.2	+1	reviewed	p.R371W	1.000	223	0%	187	18.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
NEFM	4741	genome.wustl.edu	37	8	24775623	24775623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005382.2	+1	reviewed	p.S752L	0.046	283	0.4%	158	52.5%	-	-	possibly_damaging(0.84)	tolerated(0.11)	deleterious(0.593)	NULL
NEFL	4747	genome.wustl.edu	37	8	24811806	24811806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000221169	-1	known	p.K353T	1.000	562	0%	432	26.4%	-	-	-	-	-	HMMPfam_Filament
DOCK5	80005	genome.wustl.edu	37	8	25224468	25224468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024940.6	+1	validated	p.R1069H	1.000	449	0%	277	46.9%	-	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
DOCK5	80005	genome.wustl.edu	37	8	25234911	25234911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024940.6	+1	validated	p.E1303K	1.000	327	0%	212	28.3%	-	-	benign(0.023)	tolerated(0.11)	neutral(0.273)	NULL
CDCA2	157313	genome.wustl.edu	37	8	25319714	25319714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152562.2	+1	validated	p.S126Y	0.013	280	0%	191	19.4%	-	-	possibly_damaging(0.688)	tolerated(0.05)	deleterious(0.591)	NULL
CDCA2	157313	genome.wustl.edu	37	8	25364621	25364621	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152562.2	+1	validated	p.R813	0.000	189	0%	90	23.3%	-	-	-	-	-	NULL
EBF2	64641	genome.wustl.edu	37	8	25720245	25720245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022659.2	-1	validated	p.D360Y	1.000	410	0%	325	52.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_HLH
EBF2	64641	genome.wustl.edu	37	8	25890659	25890659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022659.2	-1	validated	p.E165K	1.000	416	0%	281	81.5%	-	-	possibly_damaging(0.455)	deleterious(0.01)	deleterious(0.554)	PatternScan_COE
EBF2	64641	genome.wustl.edu	37	8	25899737	25899737	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022659.2	-1	validated	p.E54	1.000	218	0%	180	48.9%	-	-	-	-	-	NULL
PPP2R2A	5520	genome.wustl.edu	37	8	26221239	26221239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002717.3	+1	reviewed	p.F269L	1.000	207	0%	124	51.6%	-	-	benign(0.051)	tolerated(0.06)	neutral(0.326)	superfamily_WD40 repeat-like
PPP2R2A	5520	genome.wustl.edu	37	8	26221327	26221327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002717.3	+1	reviewed	p.R298Q	1.000	422	0%	223	26%	-	-	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DPYSL2	1808	genome.wustl.edu	37	8	26492317	26492317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001386.4	+1	validated	p.R238C	1.000	126	0%	144	45.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
PTK2B	2185	genome.wustl.edu	37	8	27289827	27289827	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004103.3	+1	reviewed	p.P312	0.000	87	0%	66	27.3%	-	-	-	-	-	NULL
PTK2B	2185	genome.wustl.edu	37	8	27300451	27300451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004103.3	+1	reviewed	p.R700Q	1.000	182	0%	120	23.3%	-	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
CHRNA2	1135	genome.wustl.edu	37	8	27321375	27321375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000742.3	-1	reviewed	p.Q195H	1.000	349	0%	318	54.1%	-	-	benign(0.016)	deleterious(0)	neutral(0.445)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL
CLU	1191	genome.wustl.edu	37	8	27456053	27456053	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001831.2	-1	reviewed	p.E474*	0.374	111	0%	62	45.2%	-	-	-	-	-	HMMPfam_Clusterin,HMMSmart_CLa
CLU	1191	genome.wustl.edu	37	8	27462599	27462599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001831.2	-1	reviewed	p.R276H	0.338	383	0%	227	23.8%	-	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Clusterin,HMMSmart_CLb
CCDC25	55246	genome.wustl.edu	37	8	27614247	27614247	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018246.2	-1	validated	p.R53*	1.000	262	0%	149	48.3%	-	-	-	-	-	HMMPfam_DUF814
CCDC25	55246	genome.wustl.edu	37	8	27614284	27614284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018246.2	-1	validated	p.F40L	1.000	246	0%	149	26.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF814
ESCO2	157570	genome.wustl.edu	37	8	27657194	27657194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017420.2	+1	reviewed	p.R545I	1.000	220	0%	135	31.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ELP3	55140	genome.wustl.edu	37	8	27950749	27950749	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018091.5	+1	validated	p.K6N	1.000	343	0%	207	54.6%	-	-	benign(0.189)	deleterious(0.01)	neutral(0.423)	NULL
EXTL3	2137	genome.wustl.edu	37	8	28574666	28574666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001440.2	+1	provisional	p.E364K	1.000	57	0%	66	22.7%	-	-	possibly_damaging(0.84)	tolerated(0.66)	neutral(0.324)	HMMPfam_Exostosin
INTS9	55756	genome.wustl.edu	37	8	28695257	28695257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018250.3	-1	reviewed	p.L100I	1.000	141	0%	119	53.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DUSP4	1846	genome.wustl.edu	37	8	29195983	29195983	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001394.5	-1	reviewed	p.L205	0.976	152	0%	129	21.7%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
UBXN8	7993	genome.wustl.edu	37	8	30614366	30614366	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000265616	+1	known	p.E164*	0.000	221	0%	179	52%	-	-	-	-	-	NULL
TEX15	56154	genome.wustl.edu	37	8	30699662	30699662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.S2291Y	0.000	294	0%	173	54.3%	-	-	probably_damaging(0.983)	tolerated(0.81)	neutral(0.429)	NULL
TEX15	56154	genome.wustl.edu	37	8	30704965	30704965	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.N523K	0.003	340	0%	192	26.6%	-	-	benign(0.15)	tolerated(0.66)	neutral(0.015)	NULL
TTI2	80185	genome.wustl.edu	37	8	33357960	33357960	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102401.1	-1	validated	p.I436	0.844	228	0%	150	23.3%	-	-	-	-	-	NULL
UNC5D	137970	genome.wustl.edu	37	8	35541191	35541191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080872.2	+1	validated	p.A233T	1.000	108	0%	129	35.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KCNU1	157855	genome.wustl.edu	37	8	36664949	36664949	+	Missense_Mutation	SNP	C	C	A	rs1079677	byCluster;by2Hit2Allele	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031836.2	+1	validated	p.L213I	1.000	266	0%	266	20.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNU1	157855	genome.wustl.edu	37	8	36780067	36780067	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031836.2	+1	validated	p.E886*	0.007	481	0.2%	366	24.3%	-	-	-	-	-	NULL
ERLIN2	11160	genome.wustl.edu	37	8	37609152	37609152	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007175.6	+1	validated	p.K220Q	1.000	278	0%	153	19.6%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
DDHD2	23259	genome.wustl.edu	37	8	38105320	38105320	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015214.2	+1	validated	p.I405	0.992	138	0%	70	17.1%	-	-	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
PPAPDC1B	84513	genome.wustl.edu	37	8	38122072	38122072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102559.1	-1	validated	p.R229W	0.900	193	0%	145	51.7%	-	-	possibly_damaging(0.889)	deleterious(0.02)	deleterious(0.732)	HMMPfam_PAP2,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
LETM2	137994	genome.wustl.edu	37	8	38258458	38258458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144652.1	+1	provisional	p.R196C	0.997	149	0%	133	20.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LETM1
FGFR1	2260	genome.wustl.edu	37	8	38314891	38314891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023110.2	-1	reviewed	p.P25L	0.968	121	0%	91	31.9%	-	-	benign(0.045)	tolerated(0.69)	neutral(0.005)	NULL
TACC1	6867	genome.wustl.edu	37	8	38677639	38677639	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006283.2	+1	reviewed	p.E293*	0.003	82	0%	58	12.1%	-	-	-	-	-	NULL
ADAM9	8754	genome.wustl.edu	37	8	38865415	38865415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003816.2	+1	reviewed	p.Q36H	1.000	426	0%	230	49.6%	-	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_Pep_M12B_propep
ADAM32	203102	genome.wustl.edu	37	8	39068771	39068771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145004.5	+1	validated	p.K387N	0.000	348	0%	296	30.7%	-	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
ADAM32	203102	genome.wustl.edu	37	8	39112006	39112006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145004.5	+1	validated	p.G659E	0.000	174	0%	115	50.4%	-	-	benign(0.003)	tolerated(0.16)	neutral(0.059)	NULL
ADAM18	8749	genome.wustl.edu	37	8	39587422	39587422	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014237.1	+1	reviewed	p.S728*	0.361	356	0%	215	20.5%	-	-	-	-	-	NULL
ADAM2	2515	genome.wustl.edu	37	8	39607194	39607194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001464.3	-1	reviewed	p.D623Y	0.000	382	0.3%	288	24.7%	-	-	benign(0.163)	deleterious(0.04)	neutral(0.363)	HMMPfam_EGF_2
GINS4	84296	genome.wustl.edu	37	8	41397471	41397471	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032336.2	+1	validated	p.V144	0.013	135	0%	116	23.3%	-	-	-	-	-	HMMPfam_Sld5
ANK1	286	genome.wustl.edu	37	8	41530318	41530318	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142446.1	-1	reviewed	p.I1591	1.000	52	0%	52	38.5%	-	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41548021	41548021	+	Missense_Mutation	SNP	G	G	A	rs113948846		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142446.1	-1	reviewed	p.R1360W	1.000	84	0%	104	55.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANK1	286	genome.wustl.edu	37	8	41550298	41550298	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142446.1	-1	reviewed	p.F1283	1.000	110	0%	68	27.9%	-	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41575639	41575639	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142446.1	-1	reviewed	p.I430	0.039	92	0%	99	25.3%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
KAT6A	7994	genome.wustl.edu	37	8	41790264	41790264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099412.1	-1	validated	p.S1825F	1.000	786	0%	570	52.3%	-	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	NULL
KAT6A	7994	genome.wustl.edu	37	8	41791516	41791516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099412.1	-1	validated	p.E1408K	0.811	224	0%	228	53.1%	-	-	possibly_damaging(0.916)	deleterious(0.03)	deleterious(0.732)	NULL
KAT6A	7994	genome.wustl.edu	37	8	41794925	41794925	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099412.1	-1	validated	p.I1067	0.993	222	0%	245	28.6%	-	-	-	-	-	NULL
AP3M2	10947	genome.wustl.edu	37	8	42022655	42022655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134296.1	+1	reviewed	p.D217A	1.000	217	0%	178	24.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
PLAT	5327	genome.wustl.edu	37	8	42036566	42036566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000930.3	-1	reviewed	p.S460L	1.000	55	0%	44	40.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CHRNA6	8973	genome.wustl.edu	37	8	42612179	42612179	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004198.2	-1	provisional	p.I89S	1.000	151	0%	97	48.5%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
KIAA0146	23514	genome.wustl.edu	37	8	48511562	48511562	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080394.1	+1	predicted	p.E450*	0.001	169	0.6%	108	50%	-	-	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48689458	48689458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.K4042N	0.998	628	0%	541	60.4%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMSmart_SM00146
PRKDC	5591	genome.wustl.edu	37	8	48691059	48691059	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081640.1	-1	validated	p.S3907L	0.046	92	0%	81	43.2%	-	-	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48749969	48749969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.R2521Q	1.000	142	0%	126	20.6%	-	-	possibly_damaging(0.943)	tolerated(0.47)	neutral(0.399)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48842495	48842495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.S657F	1.000	165	0%	98	31.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48866931	48866931	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.E159*	1.000	167	0%	115	44.3%	-	-	-	-	-	superfamily_ARM repeat
PXDNL	137902	genome.wustl.edu	37	8	52287167	52287167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.D1228Y	1.000	162	0%	124	12.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PXDNL	137902	genome.wustl.edu	37	8	52325728	52325728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.R629Q	0.936	421	0%	291	22.7%	-	-	probably_damaging(0.997)	tolerated(0.35)	deleterious(0.487)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52567263	52567263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.K74N	1.000	471	0%	302	23.2%	-	-	benign(0.096)	tolerated(0.31)	neutral(0.034)	HMMSmart_SM00369,superfamily_L domain-like
PCMTD1	115294	genome.wustl.edu	37	8	52733045	52733045	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052937.2	-1	validated	p.E314*	1.000	713	0%	365	24.4%	-	-	-	-	-	NULL
PCMTD1	115294	genome.wustl.edu	37	8	52746175	52746175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052937.2	-1	validated	p.R162Q	1.000	294	0%	201	21.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53335
FAM150A	389658	genome.wustl.edu	37	8	53454991	53454991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207413.3	-1	validated	p.D69Y	1.000	343	0%	287	21.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53596200	53596200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014781.4	-1	reviewed	p.S93L	1.000	134	0%	75	60%	-	-	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53596249	53596249	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014781.4	-1	reviewed	p.E77*	1.000	95	0%	61	23%	-	-	-	-	-	NULL
TCEA1	6917	genome.wustl.edu	37	8	54906281	54906281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006756.2	-1	validated	p.K89N	1.000	660	0%	469	16.8%	-	-	benign(0.269)	tolerated(0.34)	neutral(0.052)	NULL
RP1	6101	genome.wustl.edu	37	8	55538723	55538723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.K761Q	0.004	48	0%	22	31.8%	-	-	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	NULL
RP1	6101	genome.wustl.edu	37	8	55539258	55539258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.R939I	0.143	97	0%	51	35.3%	-	-	benign(0.404)	deleterious(0)	deleterious(0.575)	NULL
RP1	6101	genome.wustl.edu	37	8	55542255	55542255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.R1938H	0.964	129	0%	72	50%	-	-	probably_damaging(0.989)	tolerated(0.13)	deleterious(0.692)	NULL
XKR4	114786	genome.wustl.edu	37	8	56436607	56436607	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052898.1	+1	provisional	p.E592*	1.000	199	0%	175	13.7%	-	-	-	-	-	NULL
PENK	5179	genome.wustl.edu	37	8	57353999	57353999	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135690.1	-1	validated	p.G212	1.000	117	0%	125	32.8%	-	-	-	-	-	NULL
FAM110B	90362	genome.wustl.edu	37	8	59059236	59059236	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147189.2	+1	validated	p.S149	0.000	36	0%	18	33.3%	-	-	-	-	-	NULL
CYP7A1	1581	genome.wustl.edu	37	8	59404126	59404126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000780.3	-1	reviewed	p.K475E	0.500	116	0%	92	25%	-	-	benign(0.017)	tolerated(0.25)	neutral(0.037)	HMMPfam_p450,superfamily_Cytochrome_P450
TOX	9760	genome.wustl.edu	37	8	59728228	59728228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014729.2	-1	reviewed	p.S354L	0.998	472	0%	341	46.6%	-	-	benign(0.076)	tolerated(0.1)	neutral(0.292)	NULL
CLVS1	157807	genome.wustl.edu	37	8	62212525	62212525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173519.2	+1	validated	p.D47N	1.000	190	0%	174	25.9%	-	-	possibly_damaging(0.455)	deleterious(0.02)	deleterious(0.532)	superfamily_CRAL/TRIO N-terminal domain
CLVS1	157807	genome.wustl.edu	37	8	62289271	62289271	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173519.2	+1	validated	p.N188T	1.000	247	0%	175	47.4%	-	-	possibly_damaging(0.937)	deleterious(0.04)	deleterious(0.732)	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
CLVS1	157807	genome.wustl.edu	37	8	62412056	62412056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173519.2	+1	validated	p.E340D	0.385	202	0%	229	53.7%	-	-	benign(0)	tolerated(0.97)	-	NULL
GGH	8836	genome.wustl.edu	37	8	63938767	63938767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003878.2	-1	reviewed	p.L150S	1.000	255	0%	148	50.7%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Peptidase_C26,superfamily_SSF52317
CYP7B1	9420	genome.wustl.edu	37	8	65509203	65509203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004820.3	-1	reviewed	p.S506Y	0.001	153	0.7%	94	21.3%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
TRIM55	84675	genome.wustl.edu	37	8	67039514	67039514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_184085.1	+1	reviewed	p.S4Y	1.000	196	0%	169	54.4%	-	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	superfamily_RING/U-box
TRIM55	84675	genome.wustl.edu	37	8	67062108	67062108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_184085.1	+1	reviewed	p.L278M	1.000	296	0%	247	53.8%	-	-	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
ADHFE1	137872	genome.wustl.edu	37	8	67361179	67361179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379385	+1	known	p.S235L	0.004	326	0%	229	59.4%	-	-	-	-	-	HMMPfam_Fe-ADH
ADHFE1	137872	genome.wustl.edu	37	8	67372616	67372616	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144650.2	+1	validated	p.F412	0.538	91	0%	105	27.6%	-	-	-	-	-	HMMPfam_Fe-ADH,superfamily_Dehydroquinate synthase-like
C8orf46	254778	genome.wustl.edu	37	8	67422340	67422340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152765.3	+1	validated	p.S97Y	1.000	366	0%	213	31%	-	-	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	NULL
VCPIP1	80124	genome.wustl.edu	37	8	67577214	67577214	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025054.4	-1	validated	p.P660	0.936	275	0%	194	26.3%	-	-	-	-	-	NULL
C8orf45	157777	genome.wustl.edu	37	8	67808546	67808546	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173518.4	+1	validated	p.K474T	0.999	346	0%	270	25.2%	-	-	benign(0.043)	tolerated(0.33)	neutral(0.026)	HMMSmart_SM00350
CSPP1	79848	genome.wustl.edu	37	8	68026047	68026047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077204.1	+1	validated	p.D443Y	1.000	63	0%	39	51.3%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
CSPP1	79848	genome.wustl.edu	37	8	68092101	68092101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077204.1	+1	validated	p.R1084G	0.997	352	0%	234	25.6%	-	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68115404	68115404	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006421.3	-1	reviewed	p.K1681T	1.000	294	0%	224	24.6%	-	-	benign(0.002)	tolerated(0.36)	neutral(0.020)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68139473	68139473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006421.3	-1	reviewed	p.R1272Q	1.000	217	0%	193	28.5%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_DUF1981,superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68170416	68170416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006421.3	-1	reviewed	p.R782H	1.000	321	0%	200	18.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,superfamily_ARM-type_fold
CPA6	57094	genome.wustl.edu	37	8	68334861	68334861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020361.4	-1	validated	p.E398K	1.000	378	0%	249	58.2%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPA6	57094	genome.wustl.edu	37	8	68346382	68346382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020361.4	-1	validated	p.R311Q	1.000	287	0%	243	26.3%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPA6	57094	genome.wustl.edu	37	8	68396051	68396051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020361.4	-1	validated	p.R264C	1.000	334	0%	238	27.7%	-	-	probably_damaging(0.992)	tolerated(0.18)	deleterious(0.504)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
PREX2	80243	genome.wustl.edu	37	8	68992730	68992730	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024870.2	+1	validated	p.S565	0.998	316	0%	179	23.5%	-	-	-	-	-	"HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
PREX2	80243	genome.wustl.edu	37	8	69017565	69017565	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025170.4	+1	validated	p.E970*	0.009	141	0%	98	60.2%	-	-	-	-	-	NULL
SULF1	23213	genome.wustl.edu	37	8	70533307	70533307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.R472Q	0.998	149	0%	124	25.8%	-	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_Alkaline_phosphatase_core
SULF1	23213	genome.wustl.edu	37	8	70533393	70533393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.D501N	1.000	132	0%	96	28.1%	-	-	benign(0.001)	tolerated(0.36)	neutral(0.020)	superfamily_Alkaline_phosphatase_core
PRDM14	63978	genome.wustl.edu	37	8	70981760	70981760	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024504.2	-1	validated	p.P112	0.000	54	0%	63	47.6%	-	-	-	-	-	NULL
NCOA2	10499	genome.wustl.edu	37	8	71126245	71126245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006540.2	-1	validated	p.E51G	1.000	462	0%	302	29.1%	-	-	possibly_damaging(0.572)	deleterious(0)	deleterious(0.641)	HMMSmart_HLH,superfamily_HLH_basic
LACTB2	51110	genome.wustl.edu	37	8	71553179	71553179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016027.2	-1	validated	p.E233D	0.889	105	0%	61	31.1%	-	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
TRPA1	8989	genome.wustl.edu	37	8	72959394	72959394	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007332.2	-1	reviewed	p.R652*	0.001	249	0%	117	53%	-	-	-	-	-	superfamily_Ankyrin repeat
LOC392232	392232	genome.wustl.edu	37	8	73139228	73139228	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_037363.2	-1	model	NULL	0.999	126	0%	95	52.6%	-	-	-	-	-	-
LOC392232	392232	genome.wustl.edu	37	8	73152911	73152911	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_037363.2	-1	model	NULL	0.000	108	0%	81	29.6%	-	-	-	-	-	-
RDH10	157506	genome.wustl.edu	37	8	74233305	74233305	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172037.3	+1	validated	p.R255*	1.000	258	0%	245	26.5%	-	-	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
PI15	51050	genome.wustl.edu	37	8	75737689	75737689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015886.3	+1	reviewed	p.A69T	1.000	161	0%	111	25.2%	-	-	possibly_damaging(0.942)	tolerated(0.31)	neutral(0.414)	HMMSmart_SCP,superfamily_SCP-like_extracellular
ZFHX4	79776	genome.wustl.edu	37	8	77764215	77764215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.H1641Q	1.000	442	0%	228	49.6%	-	-	benign(0.037)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77765654	77765654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.S2121Y	1.000	138	0%	86	52.3%	-	-	probably_damaging(0.959)	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
ZFHX4	79776	genome.wustl.edu	37	8	77766926	77766926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.C2545F	0.991	134	0%	99	20.2%	-	-	possibly_damaging(0.873)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77767563	77767563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.E2757D	1.000	100	0%	59	59.3%	-	-	benign(0.156)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77767662	77767662	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.P2790	0.000	179	0%	92	60.9%	-	-	-	-	-	NULL
ZC2HC1A	51101	genome.wustl.edu	37	8	79598747	79598747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016010.2	+1	validated	p.E86*	1.000	133	0%	56	41.1%	-	-	-	-	-	NULL
TPD52	7163	genome.wustl.edu	37	8	80950387	80950387	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025252.1	-1	validated	p.T213	0.944	234	0%	181	12.7%	-	-	-	-	-	NULL
ZNF704	619279	genome.wustl.edu	37	8	81577110	81577110	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033723.1	-1	provisional	p.T289	0.021	252	0%	175	17.7%	-	-	-	-	-	NULL
FABP9	646480	genome.wustl.edu	37	8	82371438	82371438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080526.1	-1	provisional	p.E70*	1.000	498	0%	400	51%	-	-	-	-	-	HMMPfam_Lipocalin,superfamily_Calycin
IMPA1	3612	genome.wustl.edu	37	8	82598199	82598199	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144878.1	-1	reviewed	e1-1	0.009	36	0%	75	22.7%	-	-	-	-	-	-
LRRCC1	85444	genome.wustl.edu	37	8	86044056	86044056	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033402.4	+1	validated	p.E610*	1.000	364	0.3%	172	23.8%	-	-	-	-	-	NULL
LRRCC1	85444	genome.wustl.edu	37	8	86047187	86047187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033402.4	+1	validated	p.L692M	1.000	208	0%	105	27.6%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ATP6V0D2	245972	genome.wustl.edu	37	8	87151702	87151702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152565.1	+1	validated	p.D107Y	1.000	171	0%	111	15.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
SLC7A13	157724	genome.wustl.edu	37	8	87229961	87229961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138817.2	-1	validated	p.S306Y	0.000	58	0%	46	21.7%	-	-	probably_damaging(0.984)	tolerated(0.93)	neutral(0.430)	HMMPfam_AA_permease
CPNE3	8895	genome.wustl.edu	37	8	87558861	87558861	+	Missense_Mutation	SNP	G	G	T	rs146245622		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003909.3	+1	reviewed	p.K257N	1.000	403	0%	157	54.1%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
CNGB3	54714	genome.wustl.edu	37	8	87591007	87591007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019098.4	-1	reviewed	p.E671D	0.963	476	0%	353	52.4%	-	-	probably_damaging(0.984)	tolerated(0.41)	neutral(0.446)	NULL
CNGB3	54714	genome.wustl.edu	37	8	87616388	87616388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019098.4	-1	reviewed	p.L572I	0.989	219	0%	170	28.2%	-	-	benign(0.363)	tolerated(0.14)	neutral(0.365)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
DCAF4L2	138009	genome.wustl.edu	37	8	88885544	88885544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152418.3	-1	validated	p.Q219R	0.960	337	0%	350	50.3%	-	-	probably_damaging(0.969)	tolerated(0.2)	neutral(0.460)	superfamily_WD40_like
MMP16	4325	genome.wustl.edu	37	8	89198760	89198760	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005941.4	-1	reviewed	p.R117*	1.000	314	0.3%	198	51.5%	-	-	-	-	-	NULL
SLC26A7	115111	genome.wustl.edu	37	8	92365184	92365184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134266.1	+1	reviewed	p.R425Q	1.000	453	0%	257	16.7%	-	-	probably_damaging(0.997)	tolerated(0.49)	deleterious(0.477)	HMMPfam_Sulfate_transp
SLC26A7	115111	genome.wustl.edu	37	8	92406210	92406210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134266.1	+1	reviewed	p.E626D	0.998	263	0%	194	55.7%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_STAS,superfamily_STAS
RUNX1T1	862	genome.wustl.edu	37	8	92972650	92972650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175634.1	-1	reviewed	p.E545D	1.000	190	0%	153	49.7%	-	-	probably_damaging(0.984)	tolerated(0.47)	neutral(0.442)	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1
TMEM67	91147	genome.wustl.edu	37	8	94793184	94793184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153704.5	+1	reviewed	p.N318H	0.998	243	0%	148	14.2%	-	-	possibly_damaging(0.835)	tolerated(0.13)	deleterious(0.571)	HMMPfam_Meckelin
TMEM67	91147	genome.wustl.edu	37	8	94807651	94807651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153704.5	+1	reviewed	p.F563L	1.000	678	0%	525	19.8%	-	-	possibly_damaging(0.882)	tolerated(0.68)	neutral(0.346)	HMMPfam_Meckelin
TMEM67	91147	genome.wustl.edu	37	8	94815880	94815880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153704.5	+1	reviewed	p.R764*	1.000	681	0%	424	52.4%	-	-	-	-	-	HMMPfam_Meckelin
TMEM67	91147	genome.wustl.edu	37	8	94821366	94821366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153704.5	+1	reviewed	p.F880V	1.000	284	0%	184	20.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Meckelin
TMEM67	91147	genome.wustl.edu	37	8	94822105	94822105	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153704.5	+1	reviewed	p.I918	1.000	117	0%	65	16.9%	-	-	-	-	-	HMMPfam_Meckelin
PDP1	54704	genome.wustl.edu	37	8	94935416	94935416	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018444.3	+1	reviewed	p.N377H	1.000	206	0%	211	53.6%	-	-	benign(0.003)	tolerated(0.24)	neutral(0.037)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
RAD54B	25788	genome.wustl.edu	37	8	95404057	95404057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012415.2	-1	reviewed	p.R530I	1.000	261	0.4%	131	51.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N
RAD54B	25788	genome.wustl.edu	37	8	95423537	95423537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012415.2	-1	reviewed	p.S104L	0.000	177	0%	130	32.3%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95508603	95508603	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015496.3	-1	validated	p.E1446*	1.000	293	0%	252	21.8%	-	-	-	-	-	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95531528	95531528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015496.3	-1	validated	p.R733Q	1.000	123	0.8%	97	28.9%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95541372	95541372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015496.3	-1	validated	p.R269Q	0.448	1508	0.1%	1435	23.1%	-	-	benign(0.023)	tolerated(0.37)	neutral(0.020)	NULL
ESRP1	54845	genome.wustl.edu	37	8	95658453	95658453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017697.3	+1	validated	p.K145E	1.000	364	0%	259	32%	-	-	benign(0.008)	tolerated(0.16)	neutral(0.059)	NULL
INTS8	55656	genome.wustl.edu	37	8	95844359	95844359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017864.2	+1	provisional	p.S237Y	0.949	123	0%	93	15.1%	-	-	benign(0.395)	deleterious(0.03)	deleterious(0.491)	NULL
CPQ	10404	genome.wustl.edu	37	8	97892143	97892143	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016134.2	+1	provisional	p.V253	1.000	156	0%	119	44.5%	-	-	-	-	-	superfamily_SSF53187
TSPYL5	85453	genome.wustl.edu	37	8	98290062	98290062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033512.2	-1	validated	p.R4Q	0.986	7	0.000	14	0.643	-	-	unknown(0)	tolerated(0.23)	-	NULL
MTDH	92140	genome.wustl.edu	37	8	98735208	98735208	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178812.3	+1	validated	p.Q541H	1.000	358	0%	240	57.5%	-	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	NULL
MATN2	4147	genome.wustl.edu	37	8	98943234	98943234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002380.3	+1	reviewed	p.R66C	1.000	128	0%	113	27.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
C8orf47	203111	genome.wustl.edu	37	8	99101554	99101554	+	Missense_Mutation	SNP	G	G	T	rs35339824	byCluster;byFrequency	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173549.2	+1	validated	p.K103N	0.000	154	0%	94	50%	-	-	possibly_damaging(0.45)	tolerated(0.31)	neutral(0.174)	NULL
POP1	10940	genome.wustl.edu	37	8	99140663	99140663	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015029.2	+1	reviewed	p.S127	0.125	205	0%	170	14.1%	-	-	-	-	-	HMMPfam_POP1
POP1	10940	genome.wustl.edu	37	8	99146261	99146261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015029.2	+1	reviewed	p.T274A	0.982	593	0%	318	48.7%	-	-	benign(0.014)	tolerated(0.7)	neutral(0.003)	NULL
POP1	10940	genome.wustl.edu	37	8	99146748	99146748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015029.2	+1	reviewed	p.S291N	0.430	336	0%	253	25.3%	-	-	probably_damaging(0.998)	tolerated(0.21)	deleterious(0.518)	NULL
POP1	10940	genome.wustl.edu	37	8	99153060	99153060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015029.2	+1	reviewed	p.R513Q	1.000	284	0%	127	49.6%	-	-	possibly_damaging(0.661)	deleterious(0)	deleterious(0.678)	NULL
KCNS2	3788	genome.wustl.edu	37	8	99440652	99440652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020697.2	+1	provisional	p.D149N	1.000	134	0%	122	27.9%	-	-	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	NULL
KCNS2	3788	genome.wustl.edu	37	8	99440997	99440997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020697.2	+1	provisional	p.D264N	1.000	563	0%	387	17.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
STK3	6788	genome.wustl.edu	37	8	99539125	99539125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006281.2	-1	validated	p.V388I	1.000	361	0%	237	57%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100533144	100533144	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.E1576*	1.000	201	0%	150	63.3%	-	-	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100589745	100589745	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.E1727*	1.000	388	0%	239	25.9%	-	-	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100654224	100654224	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.S1827	1.000	182	0%	133	55.6%	-	-	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100836071	100836071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.F3090L	1.000	480	0%	313	53.7%	-	-	probably_damaging(0.974)	tolerated(0.82)	neutral(0.416)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100871602	100871602	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.V3671	0.933	140	0%	141	28.4%	-	-	-	-	-	NULL
RGS22	26166	genome.wustl.edu	37	8	101074919	101074919	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015668.3	-1	validated	p.E472*	1.000	223	0%	174	28.7%	-	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
RGS22	26166	genome.wustl.edu	37	8	101075761	101075761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015668.3	-1	validated	p.R412I	1.000	527	0%	332	27.1%	-	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	superfamily_Regulator of G-protein signaling RGS
RGS22	26166	genome.wustl.edu	37	8	101076173	101076173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015668.3	-1	validated	p.E275K	0.236	69	0%	41	26.8%	-	-	possibly_damaging(0.791)	tolerated(0.31)	neutral(0.324)	NULL
RGS22	26166	genome.wustl.edu	37	8	101117607	101117607	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015668.3	-1	validated	p.E17*	0.654	216	0%	140	22.1%	-	-	-	-	-	NULL
FBXO43	286151	genome.wustl.edu	37	8	101153923	101153923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029860.2	-1	validated	p.E187*	0.006	107	0%	65	56.9%	-	-	-	-	-	NULL
SPAG1	6674	genome.wustl.edu	37	8	101251483	101251483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003114.3	+1	reviewed	p.L711V	0.033	247	0%	153	17.6%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_Protein prenylyltransferase
SNX31	169166	genome.wustl.edu	37	8	101642567	101642567	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152628.3	-1	validated	p.K103N	0.028	143	0%	80	12.5%	-	-	probably_damaging(0.991)	tolerated(0.15)	deleterious(0.685)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
GRHL2	79977	genome.wustl.edu	37	8	102631782	102631782	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024915.3	+1	reviewed	p.N372H	1.000	194	0%	161	53.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CP2
GRHL2	79977	genome.wustl.edu	37	8	102678858	102678858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024915.3	+1	reviewed	p.S602L	1.000	395	0%	298	19.1%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
RRM2B	50484	genome.wustl.edu	37	8	103244441	103244441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015713.4	-1	reviewed	p.I47T	1.000	253	0%	215	58.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribonuc_red_sm,superfamily_Ferritin-like
AZIN1	51582	genome.wustl.edu	37	8	103852020	103852020	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015878.4	-1	reviewed	p.L45R	1.000	415	0%	330	10.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Orn_Arg_deC_N,superfamily_SSF51419
BAALC	79870	genome.wustl.edu	37	8	104225229	104225229	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024812.2	+1	reviewed	p.T81	0.956	222	0%	102	38.2%	-	-	-	-	-	NULL
CTHRC1	115908	genome.wustl.edu	37	8	104388142	104388142	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138455.2	+1	provisional	p.C109	0.991	167	0%	98	14.3%	-	-	-	-	-	NULL
CTHRC1	115908	genome.wustl.edu	37	8	104390437	104390437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138455.2	+1	provisional	p.M185I	1.000	264	0%	201	16.9%	-	-	benign(0.003)	tolerated(0.33)	neutral(0.024)	NULL
RIMS2	9699	genome.wustl.edu	37	8	104948915	104948915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.R838C	1.000	185	0%	100	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
DPYS	1807	genome.wustl.edu	37	8	105479112	105479112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001385.2	-1	reviewed	p.R13C	0.851	7	0.000	8	0.625	-	-	benign(0.01)	deleterious(0.02)	neutral(0.384)	superfamily_Metalo_hydrolase
ZFPM2	23414	genome.wustl.edu	37	8	106815197	106815197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012082.3	+1	reviewed	p.L963I	1.000	97	0%	70	27.1%	-	-	benign(0.273)	tolerated(0.2)	neutral(0.078)	NULL
ZFPM2	23414	genome.wustl.edu	37	8	106815651	106815651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012082.3	+1	reviewed	p.A1114V	1.000	134	0%	116	29.3%	-	-	possibly_damaging(0.602)	tolerated(0.29)	neutral(0.237)	superfamily_C2H2 and C2HC zinc fingers
OXR1	55074	genome.wustl.edu	37	8	107726115	107726115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018002.2	+1	validated	p.E620K	1.000	273	0%	154	13.6%	-	-	probably_damaging(0.954)	tolerated(0.5)	neutral(0.408)	NULL
ABRA	137735	genome.wustl.edu	37	8	107782308	107782308	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139166.4	-1	validated	p.A37	0.000	204	0%	198	21.7%	-	-	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110393706	110393706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.D91Y	1.000	192	0%	152	23%	-	-	possibly_damaging(0.701)	deleterious(0.01)	deleterious(0.657)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PKHD1L1	93035	genome.wustl.edu	37	8	110408291	110408291	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.R283*	0.025	458	0%	245	53.5%	-	-	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PKHD1L1	93035	genome.wustl.edu	37	8	110457710	110457710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.Q1871P	0.917	144	0%	150	31.3%	-	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PKHD1L1	93035	genome.wustl.edu	37	8	110465058	110465058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.L2207M	0.993	275	0%	170	34.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_G8
PKHD1L1	93035	genome.wustl.edu	37	8	110539060	110539060	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.E4178*	0.992	160	0%	134	45.5%	-	-	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113243857	113243857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.S3582F	1.000	200	0%	105	56.2%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113314116	113314116	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.I2782	0.994	417	0%	185	51.4%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113348926	113348926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.F2325C	1.000	174	0%	111	52.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113569157	113569157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.P1357T	1.000	180	0%	122	29.5%	-	-	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	114290898	114290898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.S146I	1.000	253	0%	122	27%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRPS1	7227	genome.wustl.edu	37	8	116617112	116617112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014112.2	-1	reviewed	p.E362K	1.000	422	0.2%	282	51.4%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_ZnF_C2H2
TRPS1	7227	genome.wustl.edu	37	8	116632180	116632180	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014112.2	-1	reviewed	p.E49*	1.000	286	0%	214	26.6%	-	-	-	-	-	NULL
UTP23	84294	genome.wustl.edu	37	8	117782508	117782508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032334.2	+1	validated	p.R89Q	1.000	280	0%	155	53.5%	-	-	possibly_damaging(0.91)	tolerated(0.36)	neutral(0.383)	HMMPfam_Fcf1,superfamily_SSF88723
UTP23	84294	genome.wustl.edu	37	8	117782535	117782535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032334.2	+1	validated	p.V98A	1.000	275	0%	140	26.4%	-	-	benign(0.345)	tolerated(0.12)	neutral(0.369)	HMMPfam_Fcf1,superfamily_SSF88723
RAD21	5885	genome.wustl.edu	37	8	117868976	117868976	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006265.2	-1	reviewed	p.I241	0.982	172	0%	141	19.9%	-	-	-	-	-	NULL
RAD21	5885	genome.wustl.edu	37	8	117869554	117869554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006265.2	-1	reviewed	p.Q214K	1.000	712	0%	489	51.5%	-	-	benign(0.062)	tolerated(0.92)	neutral(0.004)	NULL
EXT1	2131	genome.wustl.edu	37	8	119122911	119122911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000127.2	-1	reviewed	p.E125D	1.000	206	0%	149	30.9%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_Exostosin
EXT1	2131	genome.wustl.edu	37	8	119123171	119123171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000127.2	-1	reviewed	p.E39K	1.000	102	0%	105	18.1%	-	-	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
COLEC10	10584	genome.wustl.edu	37	8	120079578	120079578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006438.3	+1	reviewed	p.L20I	1.000	232	0%	193	26.4%	-	-	benign(0.388)	tolerated(0.72)	neutral(0.126)	NULL
ENPP2	5168	genome.wustl.edu	37	8	120602808	120602808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006209.3	-1	reviewed	p.D434Y	1.000	395	0%	228	47.8%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
ENPP2	5168	genome.wustl.edu	37	8	120633709	120633709	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006209.3	-1	reviewed	p.E115*	1.000	309	0%	239	25.9%	-	-	-	-	-	HMMPfam_Somatomedin_B,HMMSmart_SM00201,superfamily_Somatomedin B domain
TAF2	6873	genome.wustl.edu	37	8	120795765	120795765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003184.3	-1	reviewed	p.E656D	1.000	214	0%	162	23.5%	-	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
TAF2	6873	genome.wustl.edu	37	8	120795815	120795815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003184.3	-1	reviewed	p.V640L	1.000	213	0%	170	50%	-	-	benign(0.14)	tolerated(0.24)	neutral(0.050)	NULL
DSCC1	79075	genome.wustl.edu	37	8	120847152	120847152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024094.2	-1	validated	p.S388L	1.000	269	0.4%	166	11.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DSCC1	79075	genome.wustl.edu	37	8	120850621	120850621	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024094.2	-1	validated	p.S317	0.855	224	0%	173	49.1%	-	-	-	-	-	HMMPfam_DUF2036
COL14A1	7373	genome.wustl.edu	37	8	121216030	121216030	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021110.1	+1	validated	p.F320	0.990	245	0%	193	23.8%	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL14A1	7373	genome.wustl.edu	37	8	121295903	121295903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021110.1	+1	validated	p.D1285N	1.000	332	0%	236	28.8%	-	-	probably_damaging(1)	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
COL14A1	7373	genome.wustl.edu	37	8	121344960	121344960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021110.1	+1	validated	p.A1591T	0.997	341	0%	249	23.7%	-	-	benign(0)	-	-	HMMPfam_Collagen
SNTB1	6641	genome.wustl.edu	37	8	121554073	121554073	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021021.3	-1	reviewed	p.F501V	1.000	299	0%	185	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZHX2	22882	genome.wustl.edu	37	8	123963944	123963944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014943.3	+1	reviewed	p.S65F	0.286	173	0%	92	51.1%	-	-	possibly_damaging(0.924)	deleterious(0.05)	deleterious(0.718)	NULL
ZHX2	22882	genome.wustl.edu	37	8	123964287	123964287	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014943.3	+1	reviewed	p.I179	0.937	196	0%	136	31.6%	-	-	-	-	-	NULL
ZHX2	22882	genome.wustl.edu	37	8	123965670	123965670	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014943.3	+1	reviewed	p.V640	0.789	125	0%	95	32.6%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ZHX2	22882	genome.wustl.edu	37	8	123965866	123965866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014943.3	+1	reviewed	p.D706Y	0.071	107	0%	101	15.8%	-	-	possibly_damaging(0.66)	deleterious(0.03)	deleterious(0.598)	NULL
WDR67	93594	genome.wustl.edu	37	8	124146429	124146429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145647.3	+1	validated	p.K828Q	0.913	237	0%	104	16.3%	-	-	possibly_damaging(0.885)	tolerated(0.23)	neutral(0.387)	NULL
ATAD2	29028	genome.wustl.edu	37	8	124358399	124358399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.F820C	1.000	203	0%	145	51.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124358483	124358483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.R792Q	1.000	181	0%	119	55.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124358984	124358984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.S740Y	1.000	73	0%	51	58.8%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
ATAD2	29028	genome.wustl.edu	37	8	124359507	124359507	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.F679	0.969	229	0%	189	27%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124360510	124360510	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.R604*	1.000	140	0%	102	54.9%	-	-	-	-	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124373798	124373798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.R380C	1.000	253	0%	188	50%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
FAM91A1	157769	genome.wustl.edu	37	8	124798809	124798809	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144963.2	+1	validated	p.S346*	1.000	239	0%	116	27.6%	-	-	-	-	-	NULL
FER1L6	654463	genome.wustl.edu	37	8	125072944	125072944	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039112.2	+1	validated	p.F1047	0.494	274	0%	214	51.9%	-	-	-	-	-	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TATDN1	83940	genome.wustl.edu	37	8	125528140	125528140	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032026.3	-1	validated	p.E112*	1.000	296	0%	245	29.4%	-	-	-	-	-	HMMPfam_TatD_DNase,superfamily_Metallo-dependent hydrolases
MTSS1	9788	genome.wustl.edu	37	8	125716411	125716411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014751.4	-1	validated	p.D32Y	1.000	354	0%	258	48.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IMD
SQLE	6713	genome.wustl.edu	37	8	126015523	126015523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003129.3	+1	reviewed	p.V133M	0.982	361	0%	313	26.8%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_DAO,superfamily_SSF51905
KIAA0196	9897	genome.wustl.edu	37	8	126059561	126059561	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014846.3	-1	reviewed	p.Q798*	1.000	155	0%	139	25.9%	-	-	-	-	-	HMMPfam_Strumpellin
TRIB1	10221	genome.wustl.edu	37	8	126445831	126445831	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025195.2	+1	validated	p.F211	0.996	36	0%	28	60.7%	-	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MYC	4609	genome.wustl.edu	37	8	128753006	128753006	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002467.4	+1	reviewed	p.F389L	1.000	136	0%	96	27.1%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
GSDMC	56169	genome.wustl.edu	37	8	130788448	130788448	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031415.2	-1	validated	p.E102*	0.000	480	0%	382	11.8%	-	-	-	-	-	HMMPfam_Gasdermin
GSDMC	56169	genome.wustl.edu	37	8	130789711	130789711	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031415.2	-1	validated	p.K41	0.003	384	0%	279	57.3%	-	-	-	-	-	HMMPfam_Gasdermin
GSDMC	56169	genome.wustl.edu	37	8	130789715	130789715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031415.2	-1	validated	p.R40Q	0.000	392	0%	284	27.5%	-	-	possibly_damaging(0.599)	tolerated(0.58)	neutral(0.212)	HMMPfam_Gasdermin
FAM49B	51571	genome.wustl.edu	37	8	130874503	130874503	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311292	-1	known	p.E47*	1.000	234	0%	115	30.4%	-	-	-	-	-	HMMPfam_DUF1394
ADCY8	114	genome.wustl.edu	37	8	131792811	131792811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115.2	-1	reviewed	p.A1194V	0.998	495	0%	363	51.2%	-	-	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
EFR3A	23167	genome.wustl.edu	37	8	132982785	132982785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015137.3	+1	validated	p.E352K	1.000	244	0%	145	21.4%	-	-	benign(0.424)	tolerated(0.08)	neutral(0.438)	superfamily_ARM repeat
LRRC6	23639	genome.wustl.edu	37	8	133627318	133627318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012472.3	-1	provisional	p.E314K	1.000	173	0%	99	49.5%	-	-	probably_damaging(0.987)	tolerated(0.12)	deleterious(0.697)	NULL
TMEM71	137835	genome.wustl.edu	37	8	133740221	133740221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144649.2	-1	validated	p.D148N	0.000	110	0%	98	21.4%	-	-	benign(0.29)	deleterious(0.02)	deleterious(0.473)	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133806667	133806667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016018.4	+1	validated	p.R32Q	1.000	271	0%	157	21.7%	-	-	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	HMMSmart_SM00333,HMMSmart_SM00743,superfamily_Tudor/PWWP/MBT
PHF20L1	51105	genome.wustl.edu	37	8	133854869	133854869	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016018.4	+1	validated	p.R833*	0.000	182	0%	97	27.8%	-	-	-	-	-	NULL
SLA	6503	genome.wustl.edu	37	8	134072408	134072408	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006748.3	-1	validated	p.E40*	0.001	271	0%	183	43.7%	-	-	-	-	-	NULL
TG	7038	genome.wustl.edu	37	8	134108557	134108557	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.V2504	0.629	220	0%	167	18.6%	-	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
FAM135B	51059	genome.wustl.edu	37	8	139151323	139151323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.Q1269H	1.000	299	0%	211	48.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases
FAM135B	51059	genome.wustl.edu	37	8	139164855	139164855	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.G621	0.000	375	0%	326	23.3%	-	-	-	-	-	NULL
FAM135B	51059	genome.wustl.edu	37	8	139255227	139255227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.N209K	1.000	199	0%	103	45.6%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
COL22A1	169044	genome.wustl.edu	37	8	139728482	139728482	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341807	-1	known	p.E66*	1.000	150	0%	128	50.8%	-	-	benign(0.272)	tolerated(0.63)	neutral(0.033)	HMMPfam_Collagen
COL22A1	169044	genome.wustl.edu	37	8	139825227	139825227	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152888.1	-1	validated	p.S427	0.126	277	0%	197	51.8%	-	-	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
EIF2C2	27161	genome.wustl.edu	37	8	141545600	141545600	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012154.3	-1	reviewed	p.S739L	1.000	260	0%	223	25.1%	-	-	-	-	-	NULL
DENND3	22898	genome.wustl.edu	37	8	142186774	142186774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014957.2	+1	validated	p.E794K	1.000	284	0%	189	51.9%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SLC45A4	57210	genome.wustl.edu	37	8	142221695	142221695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080431.1	-1	provisional	p.S748Y	0.000	38	0%	18	38.9%	-	-	unknown(0)	-	-	NULL
GPR20	2843	genome.wustl.edu	37	8	142367782	142367782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005293.2	-1	validated	p.R81H	1.000	64	0%	57	33.3%	-	-	possibly_damaging(0.922)	tolerated(0.12)	deleterious(0.632)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FLJ43860	389690	genome.wustl.edu	37	8	142444698	142444698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207414.2	-1	validated	p.A1270V	0.833	188	0%	130	51.5%	-	-	possibly_damaging(0.888)	tolerated(0.05)	deleterious(0.693)	superfamily_ARM repeat
TSNARE1	203062	genome.wustl.edu	37	8	143395784	143395784	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145003.3	-1	validated	p.S364	1.000	220	0%	204	21.1%	-	-	-	-	-	superfamily_t-snare
BAI1	575	genome.wustl.edu	37	8	143614791	143614791	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001702.2	+1	reviewed	p.F1178	0.750	40	0%	45	28.9%	-	-	unknown(0)	-	-	HMMPfam_7tm_2
LOC100289310	100289310	genome.wustl.edu	37	8	143783070	143783070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342870.1	-1	model	p.R14Q	0.000	367	0%	299	51.8%	-	-	-	-	-	NULL
TOP1MT	116447	genome.wustl.edu	37	8	144413418	144413418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052963.1	-1	reviewed	p.D72N	0.007	102	1%	74	28.4%	-	-	benign(0.081)	deleterious(0.03)	neutral(0.370)	HMMPfam_Topoisom_I_N,superfamily_TopoI_DNA_bd_euk
RHPN1	114822	genome.wustl.edu	37	8	144463817	144463817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052924.2	+1	validated	p.G522S	0.996	45	0%	52	53.8%	-	-	benign(0.086)	tolerated(0.34)	neutral(0.029)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
ZNF623	9831	genome.wustl.edu	37	8	144733336	144733336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014789.3	+1	validated	p.E432K	0.025	165	0%	177	10.2%	-	-	probably_damaging(0.99)	tolerated(0.75)	neutral(0.443)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF707	286075	genome.wustl.edu	37	8	144773802	144773802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100598.1	+1	validated	p.R59C	0.000	157	0%	119	16.8%	-	-	possibly_damaging(0.468)	tolerated(0.06)	deleterious(0.476)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
EPPK1	83481	genome.wustl.edu	37	8	144940517	144940517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.S2302L	1.000	191	0%	240	11.3%	-	-	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
EPPK1	83481	genome.wustl.edu	37	8	144941464	144941464	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.T1986	0.000	81	0%	92	46.7%	-	-	-	-	-	HMMSmart_SM00250,superfamily_Plakin repeat
PLEC	5339	genome.wustl.edu	37	8	144997578	144997578	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.F2310	0.486	15	0%	23	56.5%	-	-	-	-	-	NULL
PLEC	5339	genome.wustl.edu	37	8	144998374	144998374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.R2045Q	1.000	21	0%	28	67.9%	-	-	unknown(0)	-	-	NULL
SPATC1	375686	genome.wustl.edu	37	8	145094857	145094857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198572.2	+1	validated	p.E87K	0.295	103	0%	95	50.5%	-	-	possibly_damaging(0.481)	deleterious(0.04)	deleterious(0.508)	NULL
OPLAH	26873	genome.wustl.edu	37	8	145111871	145111871	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426825	-1	known	p.L562	1.000	34	0%	40	30%	-	-	-	-	-	NULL
HEATR7A	727957	genome.wustl.edu	37	8	145235127	145235127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032450.2	+1	provisional	p.A116V	0.998	180	0%	164	14%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
HEATR7A	727957	genome.wustl.edu	37	8	145246714	145246714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032450.2	+1	provisional	p.L271F	0.268	71	0%	75	16%	-	-	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	superfamily_ARM repeat
CPSF1	29894	genome.wustl.edu	37	8	145623170	145623170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013291.2	-1	validated	p.H691R	0.965	27	0%	27	48.1%	-	-	benign(0.003)	tolerated(0.58)	neutral(0.005)	NULL
CPSF1	29894	genome.wustl.edu	37	8	145626927	145626927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013291.2	-1	validated	p.L68P	1.000	114	0%	131	45.8%	-	-	possibly_damaging(0.946)	deleterious(0.02)	deleterious(0.773)	NULL
ZNF7	7553	genome.wustl.edu	37	8	146067239	146067239	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003416.2	+1	validated	p.P249	0.000	98	0%	98	28.6%	-	-	-	-	-	superfamily_SSF57667
ZNF7	7553	genome.wustl.edu	37	8	146067243	146067243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003416.2	+1	validated	p.E251K	0.000	100	1%	101	58.4%	-	-	benign(0.006)	tolerated(1)	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF7	7553	genome.wustl.edu	37	8	146067469	146067469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003416.2	+1	validated	p.R326I	0.995	164	0%	128	51.6%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FOXD4	2298	genome.wustl.edu	37	9	117146	117146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207305.3	-1	validated	p.V325A	0.994	174	0%	125	24.8%	-	-	benign(0.099)	tolerated(1)	neutral(0.007)	NULL
CBWD1	55871	genome.wustl.edu	37	9	154705	154705	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377447	-1	known	p.Y222	0.237	203	0%	67	23.9%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DOCK8	81704	genome.wustl.edu	37	9	271719	271719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453981	+1	known	p.S49Y	1.000	442	0%	196	12.2%	-	-	possibly_damaging(0.609)	tolerated(0.45)	neutral(0.223)	NULL
DOCK8	81704	genome.wustl.edu	37	9	379883	379883	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203447.3	+1	reviewed	p.Y783	0.977	113	0%	96	37.5%	-	-	-	-	-	NULL
DOCK8	81704	genome.wustl.edu	37	9	429720	429720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203447.3	+1	reviewed	p.E1430K	1.000	208	0.5%	96	31.2%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
VLDLR	7436	genome.wustl.edu	37	9	2639887	2639887	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003383.3	+1	reviewed	p.F77	0.998	267	0%	183	23%	-	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module,HMMSmart_SM00181
KIAA0020	9933	genome.wustl.edu	37	9	2810431	2810431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014878.4	-1	validated	p.L546F	1.000	521	0%	305	36.4%	-	-	benign(0.003)	tolerated(0.12)	neutral(0.261)	HMMPfam_CPL
KIAA0020	9933	genome.wustl.edu	37	9	2829887	2829887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014878.4	-1	validated	p.R247W	1.000	327	0%	149	26.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00025,superfamily_ARM repeat
GLIS3-AS1	84850	genome.wustl.edu	37	9	3898658	3898658	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026663.1	+1	validated	NULL	0.000	58	0%	23	43.5%	-	-	-	-	-	-
SLC1A1	6505	genome.wustl.edu	37	9	4573931	4573931	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422398	+1	known	p.P27S	1.000	407	0%	232	32.3%	-	-	-	-	-	HMMPfam_SDF
C9orf68	55064	genome.wustl.edu	37	9	4625553	4625553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039395.3	-1	validated	p.E148A	0.001	105	0%	50	48%	-	-	-	-	-	NULL
JAK2	3717	genome.wustl.edu	37	9	5054768	5054768	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004972.3	+1	reviewed	p.E274*	1.000	257	0%	97	36.1%	-	-	-	-	-	NULL
JAK2	3717	genome.wustl.edu	37	9	5055687	5055687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004972.3	+1	reviewed	p.D319N	1.000	276	0%	97	38.1%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
JAK2	3717	genome.wustl.edu	37	9	5072585	5072585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004972.3	+1	reviewed	p.L579I	1.000	195	0%	76	28.9%	-	-	benign(0.087)	tolerated(0.42)	neutral(0.021)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
JAK2	3717	genome.wustl.edu	37	9	5090886	5090886	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004972.3	+1	reviewed	p.E1012*	1.000	162	0%	60	38.3%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KIAA1432	57589	genome.wustl.edu	37	9	5743733	5743733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020829.2	+1	validated	p.S285Y	1.000	367	0%	138	35.5%	-	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	superfamily_Amine_DH_B_like
KIAA1432	57589	genome.wustl.edu	37	9	5747464	5747464	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020829.2	+1	validated	p.L392V	1.000	282	0%	167	32.9%	-	-	possibly_damaging(0.633)	tolerated(0.32)	neutral(0.245)	superfamily_Amine_DH_B_like
KIAA2026	158358	genome.wustl.edu	37	9	5922814	5922814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.P1061L	1.000	406	0%	214	39.3%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5944872	5944872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.S794L	1.000	575	0%	327	27.8%	-	-	possibly_damaging(0.767)	-	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5968511	5968511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.R574C	0.409	224	0%	144	33.3%	-	-	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6012213	6012213	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024094.1	-1	validated	NULL	0.015	32	0%	16	50%	-	-	-	-	-	-
RANBP6	26953	genome.wustl.edu	37	9	6012489	6012489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012416.2	-1	validated	p.N1040T	1.000	363	0%	192	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6012759	6012759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012416.2	-1	validated	p.S950Y	1.000	277	0.4%	176	43.2%	-	-	benign(0.119)	tolerated(0.2)	neutral(0.059)	NULL
LOC645969	645969	genome.wustl.edu	37	9	6278792	6278792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342907.1	+1	model	p.E16D	1.000	430	0.2%	283	16.3%	-	-	-	-	-	HMMPfam_SelT
UHRF2	115426	genome.wustl.edu	37	9	6504624	6504624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152896.1	+1	reviewed	p.M732T	1.000	278	0%	183	41%	-	-	possibly_damaging(0.784)	tolerated(0.57)	neutral(0.299)	superfamily_RING/U-box
GLDC	2731	genome.wustl.edu	37	9	6602147	6602147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000170.2	-1	reviewed	p.R373W	1.000	344	0%	239	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P
KDM4C	23081	genome.wustl.edu	37	9	7011780	7011780	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015061.3	+1	reviewed	p.T623	0.018	177	0%	111	38.7%	-	-	-	-	-	NULL
PTPRD	5789	genome.wustl.edu	37	9	8528768	8528768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.P122T	1.000	90	0%	68	27.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Immunoglobulin
TYRP1	7306	genome.wustl.edu	37	9	12702394	12702394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000550.2	+1	reviewed	p.P346H	1.000	312	0.3%	148	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tyrosinase,superfamily_Di-copper_centre
MPDZ	8777	genome.wustl.edu	37	9	13110679	13110679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003829.3	-1	validated	p.A1900T	1.000	248	0%	145	20%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MPDZ	8777	genome.wustl.edu	37	9	13217245	13217245	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003829.3	-1	validated	p.E379*	1.000	315	0%	111	28.8%	-	-	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
TTC39B	158219	genome.wustl.edu	37	9	15186968	15186968	+	Silent	SNP	C	C	T	rs192525613	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152574.2	-1	validated	p.T421	0.666	354	0%	208	33.7%	-	-	-	-	-	HMMPfam_Deme6,superfamily_TPR-like
TTC39B	158219	genome.wustl.edu	37	9	15211275	15211275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152574.2	-1	validated	p.Q135H	0.980	239	0%	145	30.3%	-	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMPfam_Deme6
PSIP1	11168	genome.wustl.edu	37	9	15474045	15474045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128217.1	-1	validated	p.D274N	1.000	503	0%	228	16.7%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
PSIP1	11168	genome.wustl.edu	37	9	15506559	15506559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128217.1	-1	validated	p.T50I	1.000	434	0%	230	35.2%	-	-	benign(0.232)	deleterious(0.02)	neutral(0.406)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
C9orf93	203238	genome.wustl.edu	37	9	15591504	15591504	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173550.2	+1	predicted	p.E165*	0.926	159	0%	80	46.3%	-	-	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15920350	15920350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173550.2	+1	predicted	p.R1228Q	1.000	291	0.7%	128	30.5%	-	-	benign(0.142)	deleterious(0.02)	neutral(0.395)	NULL
BNC2	54796	genome.wustl.edu	37	9	16435690	16435690	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017637.5	-1	validated	p.I834	1.000	193	0%	115	37.4%	-	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BNC2	54796	genome.wustl.edu	37	9	16436742	16436742	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017637.5	-1	validated	p.R484*	1.000	299	0%	164	26.2%	-	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SH3GL2	6456	genome.wustl.edu	37	9	17789460	17789460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003026.2	+1	validated	p.P179L	1.000	265	0%	143	41.3%	-	-	possibly_damaging(0.885)	deleterious(0.01)	deleterious(0.752)	HMMPfam_BAR,HMMSmart_SM00721
ADAMTSL1	92949	genome.wustl.edu	37	9	18889697	18889697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040272.4	+1	validated	p.R1532C	0.951	41	0%	21	42.9%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
RRAGA	10670	genome.wustl.edu	37	9	19050115	19050115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006570.4	+1	validated	p.R153H	1.000	146	0%	108	31.5%	-	-	possibly_damaging(0.546)	tolerated(0.13)	neutral(0.438)	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
HAUS6	54801	genome.wustl.edu	37	9	19058433	19058433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017645.3	-1	provisional	p.E778K	1.000	116	0%	67	32.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HAUS6	54801	genome.wustl.edu	37	9	19058868	19058868	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017645.3	-1	provisional	p.E633*	0.077	328	0%	181	38.1%	-	-	-	-	-	NULL
DENND4C	55667	genome.wustl.edu	37	9	19324397	19324397	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017925.4	+1	provisional	p.F379	1.000	169	0%	92	42.4%	-	-	-	-	-	HMMPfam_dDENN,HMMSmart_SM00801
RPS6	6194	genome.wustl.edu	37	9	19379552	19379552	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010.2	-1	reviewed	p.L24H	1.000	186	0%	117	15.4%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Ribosomal_S6e
KIAA1797	54914	genome.wustl.edu	37	9	20982419	20982419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017794.3	+1	validated	p.A1568T	0.166	337	0%	140	35%	-	-	benign(0.004)	tolerated(0.06)	neutral(0.323)	NULL
IFNA4	3441	genome.wustl.edu	37	9	21187348	21187348	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021068.2	-1	validated	p.F61	0.120	373	0.3%	226	37.2%	-	-	-	-	-	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
IFNA16	3449	genome.wustl.edu	37	9	21216966	21216966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002173.2	-1	provisional	p.F113L	0.000	460	0%	297	36.7%	-	-	benign(0.064)	tolerated(0.07)	neutral(0.323)	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
IFNA2	3440	genome.wustl.edu	37	9	21385308	21385308	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000605.3	-1	validated	p.L7	0.000	288	0%	147	27.2%	-	-	-	-	-	HMMPfam_Interferon
IFNA1	3439	genome.wustl.edu	37	9	21440598	21440598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024013.1	+1	validated	p.S31N	0.000	298	0%	208	31.7%	-	-	benign(0.003)	tolerated(0.7)	neutral(0.002)	HMMPfam_Interferon,superfamily_4_helix_cytokine
MTAP	4507	genome.wustl.edu	37	9	21854706	21854706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002451.3	+1	reviewed	p.R176H	1.000	108	0%	76	28.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
C9orf82	79886	genome.wustl.edu	37	9	26887349	26887349	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024828.3	-1	validated	p.E156*	1.000	95	0%	62	25.8%	-	-	-	-	-	NULL
PLAA	9373	genome.wustl.edu	37	9	26905751	26905751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031689.2	-1	validated	p.D716N	1.000	351	0.3%	220	32.7%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_PUL,superfamily_ARM-type_fold
TEK	7010	genome.wustl.edu	37	9	27158079	27158079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000459.3	+1	reviewed	p.F101L	1.000	364	0%	167	34.7%	-	-	benign(0.125)	tolerated(0.46)	neutral(0.022)	HMMPfam_Ig_Tie2_1
TEK	7010	genome.wustl.edu	37	9	27192537	27192537	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000459.3	+1	reviewed	p.E514*	0.934	156	0%	91	26.4%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TEK	7010	genome.wustl.edu	37	9	27209162	27209162	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000459.3	+1	reviewed	p.L873	1.000	289	0%	145	11%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
C9orf72	203228	genome.wustl.edu	37	9	27548594	27548594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018325.2	-1	validated	p.R407I	1.000	275	0.4%	108	31.5%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
LINGO2	158038	genome.wustl.edu	37	9	27950200	27950200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152570.1	-1	provisional	p.S157Y	0.996	159	0%	92	34.8%	-	-	probably_damaging(0.982)	tolerated(0.19)	deleterious(0.476)	HMMPfam_LRR_1,superfamily_SSF52058
LOC100288436	100288436	genome.wustl.edu	37	9	30558981	30558981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342887.1	-1	model	p.L153F	0.798	532	0%	274	22.3%	-	-	-	-	-	NULL
LOC100288436	100288436	genome.wustl.edu	37	9	30559290	30559290	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342887.1	-1	model	p.E50*	0.018	142	0%	79	12.7%	-	-	-	-	-	NULL
ACO1	48	genome.wustl.edu	37	9	32424622	32424622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.S383A	1.000	264	0%	143	26.6%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
DDX58	23586	genome.wustl.edu	37	9	32488074	32488074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014314.3	-1	reviewed	p.P361S	0.992	481	0.2%	245	40.4%	-	-	benign(0.01)	tolerated(0.36)	neutral(0.021)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TOPORS	10210	genome.wustl.edu	37	9	32542651	32542651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005802.3	-1	reviewed	p.M624I	0.668	440	0%	262	34.7%	-	-	unknown(0)	tolerated(0.41)	-	NULL
TOPORS	10210	genome.wustl.edu	37	9	32543483	32543483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005802.3	-1	reviewed	p.R347Q	0.999	128	0%	92	13%	-	-	unknown(0)	tolerated(0.05)	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32630394	32630394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.E1728D	0.999	377	0.3%	296	39.5%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32633483	32633483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.L699I	1.000	624	0%	366	35%	-	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32634993	32634993	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.L195	0.903	522	0%	310	37.1%	-	-	-	-	-	NULL
APTX	54840	genome.wustl.edu	37	9	32973572	32973572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175073.1	-1	reviewed	p.R318H	0.956	100	0%	76	34.2%	-	-	benign(0.028)	deleterious(0.03)	neutral(0.366)	superfamily_HIT-like
APTX	54840	genome.wustl.edu	37	9	32973608	32973608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175073.1	-1	reviewed	p.R306Q	0.318	86	0%	90	31.1%	-	-	benign(0.177)	deleterious(0.03)	neutral(0.381)	superfamily_HIT-like
DNAJA1	3301	genome.wustl.edu	37	9	33036573	33036573	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001539.2	+1	validated	p.R254*	1.000	120	0%	75	32%	-	-	-	-	-	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
NFX1	4799	genome.wustl.edu	37	9	33366637	33366637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002504.3	+1	reviewed	p.S1017I	0.021	115	0%	66	42.4%	-	-	benign(0.03)	deleterious(0.05)	neutral(0.347)	HMMPfam_R3H,HMMSmart_SM00393,superfamily_R3H domain
ANKRD18B	441459	genome.wustl.edu	37	9	33566285	33566285	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718334.2	+1	model	p.E909D	0.012	181	0%	83	36.1%	-	-	benign(0.414)	tolerated(0.19)	neutral(0.183)	NULL
TRBV25OR9-2	6960	genome.wustl.edu	37	9	33649389	33649389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399779	+1	known	p.S43Y	0.009	259	0%	82	29.3%	-	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
DCAF12	25853	genome.wustl.edu	37	9	34088427	34088427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015397.3	-1	reviewed	p.S428L	1.000	267	0%	136	36%	-	-	possibly_damaging(0.462)	tolerated(0.42)	neutral(0.166)	NULL
NUDT2	318	genome.wustl.edu	37	9	34339072	34339072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001161.3	+1	reviewed	p.R12Q	1.000	229	0%	200	36.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
DNAI1	27019	genome.wustl.edu	37	9	34490013	34490013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012144.2	+1	reviewed	p.S131Y	1.000	152	0%	82	34.1%	-	-	benign(0.013)	tolerated(0.12)	neutral(0.261)	superfamily_WD40_like
GALT	2592	genome.wustl.edu	37	9	34647491	34647491	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000155.2	+1	reviewed	p.V85	0.954	300	0%	201	34.8%	-	-	-	-	-	HMMPfam_GalP_UDP_transf,superfamily_HIT-like
GALT	2592	genome.wustl.edu	37	9	34649520	34649520	+	Missense_Mutation	SNP	G	G	A	rs111033806	byCluster	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000155.2	+1	reviewed	p.E340K	1.000	187	0%	127	34.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GalP_UDP_tr_C,superfamily_HIT-like
FAM205A	259308	genome.wustl.edu	37	9	34725699	34725699	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141917.1	-1	validated	p.F513C	0.021	55	0%	28	28.6%	-	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
UNC13B	10497	genome.wustl.edu	37	9	35396556	35396556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006377.3	+1	reviewed	p.R1049W	0.483	125	0%	74	41.9%	-	-	possibly_damaging(0.912)	deleterious(0.03)	deleterious(0.728)	NULL
RUSC2	9853	genome.wustl.edu	37	9	35560514	35560514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135999.1	+1	validated	p.R1293C	0.998	112	0.9%	65	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TESK1	7016	genome.wustl.edu	37	9	35606073	35606073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006285.2	+1	reviewed	p.M104I	1.000	93	1.1%	70	35.7%	-	-	benign(0.045)	deleterious(0.04)	neutral(0.351)	superfamily_Kinase_like,HMMPfam_Pkinase
SIT1	27240	genome.wustl.edu	37	9	35650039	35650039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014450.2	-1	validated	p.R133W	1.000	79	0%	71	32.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C9orf100	84904	genome.wustl.edu	37	9	35663302	35663302	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378382	-1	known	p.L187	0.000	248	0%	138	33.3%	-	-	-	-	-	HMMSmart_SM00325
RGP1	9827	genome.wustl.edu	37	9	35752849	35752849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080496.1	+1	provisional	p.S425N	1.000	55	0%	54	38.9%	-	-	possibly_damaging(0.49)	tolerated(0.06)	deleterious(0.486)	NULL
NPR2	4882	genome.wustl.edu	37	9	35808830	35808830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003995.3	+1	reviewed	p.R989Q	1.000	328	0%	219	38.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1
OR2S2	56656	genome.wustl.edu	37	9	35957270	35957270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019897.2	-1	provisional	p.L276I	0.038	178	0%	112	12.5%	-	-	benign(0.008)	tolerated(0.62)	neutral(0.004)	HMMPfam_7tm_1,superfamily_SSF81321
CCIN	881	genome.wustl.edu	37	9	36170073	36170073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005893.2	+1	reviewed	p.L192F	1.000	102	0%	49	20.4%	-	-	possibly_damaging(0.66)	deleterious(0.02)	deleterious(0.616)	HMMPfam_BACK
CCIN	881	genome.wustl.edu	37	9	36170537	36170537	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005893.2	+1	reviewed	p.W346*	1.000	85	0%	91	37.4%	-	-	-	-	-	PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
MELK	9833	genome.wustl.edu	37	9	36581696	36581696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014791.2	+1	provisional	p.E6D	0.998	431	0.2%	231	33.3%	-	-	benign(0.199)	tolerated(0.23)	neutral(0.060)	superfamily_Kinase_like
ZCCHC7	84186	genome.wustl.edu	37	9	37357032	37357032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032226.2	+1	validated	p.R467C	0.001	260	0%	91	34.1%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
ZBTB5	9925	genome.wustl.edu	37	9	37441344	37441344	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014872.2	-1	validated	p.E402A	1.000	142	0%	86	22.1%	-	-	benign(0.304)	tolerated(0.32)	neutral(0.118)	NULL
LOC647013	647013	genome.wustl.edu	37	9	37477389	37477389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726034.2	+1	model	p.G82R	0.004	163	0%	94	45.7%	-	-	-	-	-	NULL
LOC647013	647013	genome.wustl.edu	37	9	37477630	37477630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726034.2	+1	model	p.G162D	1.000	179	0%	67	28.4%	-	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
FBXO10	26267	genome.wustl.edu	37	9	37515996	37515996	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012166.2	-1	validated	p.I867	1.000	673	0%	370	35.7%	-	-	-	-	-	superfamily_Pectin_lyas_like
FBXO10	26267	genome.wustl.edu	37	9	37541343	37541343	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012166.2	-1	validated	p.Y141	0.637	321	0%	174	11.5%	-	-	-	-	-	superfamily_Pectin_lyas_like
FRMPD1	22844	genome.wustl.edu	37	9	37732429	37732429	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014907.2	+1	validated	p.K329	1.000	79	0%	50	26%	-	-	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
FRMPD1	22844	genome.wustl.edu	37	9	37733474	37733474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014907.2	+1	validated	p.D334Y	1.000	153	0%	78	29.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
FRMPD1	22844	genome.wustl.edu	37	9	37740134	37740134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014907.2	+1	validated	p.E537K	0.928	21	0%	29	27.6%	-	-	possibly_damaging(0.946)	tolerated(0.08)	deleterious(0.690)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37740538	37740538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014907.2	+1	validated	p.K671N	0.992	85	0%	41	26.8%	-	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37744805	37744805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014907.2	+1	validated	p.E926K	0.998	80	0%	68	36.8%	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
MCART1	92014	genome.wustl.edu	37	9	37879095	37879095	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024872.1	-1	validated	NULL	0.942	127	0%	72	11.1%	-	-	-	-	-	-
C9orf51	647044	genome.wustl.edu	37	9	38527238	38527238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377689	+1	known	p.N49D	0.003	36	0%	22	40.9%	-	-	probably_damaging(0.981)	tolerated(0.78)	neutral(0.426)	NULL
C9orf51	647044	genome.wustl.edu	37	9	38527723	38527723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377689	+1	known	p.L210F	0.005	116	0%	69	46.4%	-	-	probably_damaging(0.998)	tolerated(0.34)	deleterious(0.497)	NULL
ANKRD18A	253650	genome.wustl.edu	37	9	38595542	38595542	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399703	-1	known	p.E599*	0.019	124	0%	47	17%	-	-	-	-	-	NULL
ANKRD18A	253650	genome.wustl.edu	37	9	38603157	38603157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399703	-1	known	p.K287N	0.070	151	0%	71	38%	-	-	benign(0.113)	tolerated(0.25)	neutral(0.046)	NULL
ZNF658	26149	genome.wustl.edu	37	9	40773291	40773291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033160.5	-1	validated	p.E662*	0.018	398	0%	253	34.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM75A6	389730	genome.wustl.edu	37	9	43626758	43626758	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145196.1	-1	predicted	p.T643	0.000	60	0%	23	73.9%	-	-	-	-	-	NULL
LOC389722	389722	genome.wustl.edu	37	9	43815842	43815842	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342910.1	+1	model	p.K199T	0.836	239	0%	116	17.2%	-	-	benign(0.111)	tolerated(0.07)	neutral(0.328)	superfamily_Concanavalin A-like lectins/glucanases
LOC100288765	100288765	genome.wustl.edu	37	9	69845902	69845902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342925.1	+1	model	p.E77D	0.187	119	0%	44	13.6%	-	-	-	-	-	NULL
LOC100288765	100288765	genome.wustl.edu	37	9	69847060	69847060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342925.1	+1	model	p.R385I	1.000	40	0%	52	11.5%	-	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PIP5K1B	8395	genome.wustl.edu	37	9	71532621	71532621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003558.2	+1	validated	p.S310Y	1.000	210	0%	94	41.5%	-	-	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
SMC5	23137	genome.wustl.edu	37	9	72897383	72897383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015110.3	+1	validated	p.R289C	0.976	251	0%	73	23.3%	-	-	benign(0.145)	tolerated(0.11)	neutral(0.284)	HMMPfam_SMC_N,superfamily_SSF52540
TRPM3	80036	genome.wustl.edu	37	9	73151416	73151416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.S1526F	1.000	441	0%	194	42.3%	-	-	possibly_damaging(0.44)	deleterious(0.01)	deleterious(0.549)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73213485	73213485	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396280	-1	known	p.R803W	0.012	112	0%	71	39.4%	-	-	-	-	-	HMMPfam_Ion_trans
MIR204	406987	genome.wustl.edu	37	9	73424991	73424991	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385200	-1	known	NULL	1.000	183	0%	113	30.1%	-	-	-	-	-	-
TRPM3	80036	genome.wustl.edu	37	9	73458034	73458034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.R229H	0.996	155	0%	85	31.8%	-	-	benign(0.036)	tolerated(0.05)	neutral(0.347)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74360004	74360004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013390.2	-1	validated	p.L322I	1.000	186	0%	126	23%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74360309	74360309	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013390.2	-1	validated	p.K220T	1.000	163	0%	118	35.6%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_G8
RORB	6096	genome.wustl.edu	37	9	77257643	77257643	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006914.3	+1	reviewed	p.I183	1.000	40	2.5%	43	30.2%	-	-	-	-	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77359094	77359094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361255	-1	known	p.V1681A	0.979	354	0%	172	24.4%	-	-	benign(0.25)	tolerated(0.51)	neutral(0.034)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77407577	77407577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.F834C	1.000	372	0%	171	35.1%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77457139	77457139	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.P91	0.984	535	0%	299	35.8%	-	-	-	-	-	NULL
PCSK5	5125	genome.wustl.edu	37	9	78686647	78686647	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006200.3	+1	reviewed	p.R243*	1.000	205	0.5%	106	38.7%	-	-	-	-	-	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
PRUNE2	158471	genome.wustl.edu	37	9	79320911	79320911	+	Silent	SNP	G	G	A	rs138148457	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426088	-1	known	p.R1415*	1.000	230	0%	152	40.8%	-	-	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79891080	79891080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.D923N	1.000	348	0%	164	23.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79954754	79954754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.R2234Q	1.000	157	0%	88	44.3%	-	-	probably_damaging(1)	tolerated(0.39)	deleterious(0.516)	HMMPfam_DUF1162
PSAT1	29968	genome.wustl.edu	37	9	80921233	80921233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058179.2	+1	reviewed	p.I134T	1.000	228	0%	135	32.6%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
FAM75D1	389763	genome.wustl.edu	37	9	84607565	84607565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001670.2	+1	validated	p.R727K	0.000	380	0%	181	38.7%	-	-	benign(0.001)	tolerated(1)	-	NULL
RASEF	158158	genome.wustl.edu	37	9	85615864	85615864	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152573.2	-1	provisional	p.Q462*	0.995	123	0%	83	31.3%	-	-	-	-	-	NULL
FRMD3	257019	genome.wustl.edu	37	9	85905529	85905529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174938.4	-1	validated	p.P395H	0.010	239	0%	107	12.1%	-	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
C9orf103	414328	genome.wustl.edu	37	9	86258600	86258600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001551.1	+1	provisional	p.P111S	1.000	114	0%	56	51.8%	-	-	benign(0.044)	tolerated(0.05)	neutral(0.348)	superfamily_SSF52540
UBQLN1	29979	genome.wustl.edu	37	9	86293456	86293456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013438.4	-1	reviewed	p.R257Q	1.000	363	0%	173	34.7%	-	-	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	NULL
KIF27	55582	genome.wustl.edu	37	9	86468627	86468627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017576.1	-1	provisional	p.R1092C	1.000	255	0%	161	34.2%	-	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
KIF27	55582	genome.wustl.edu	37	9	86506401	86506401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017576.1	-1	provisional	p.E540K	1.000	310	0%	173	37%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
HNRNPK	3190	genome.wustl.edu	37	9	86588205	86588205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002140.3	-1	reviewed	p.R171Q	1.000	83	0%	36	19.4%	-	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
RMI1	80010	genome.wustl.edu	37	9	86616370	86616370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024945.2	+1	validated	p.L157I	1.000	149	0%	70	34.3%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_tRNA_anti
SLC28A3	64078	genome.wustl.edu	37	9	86900957	86900957	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022127.1	-1	provisional	p.I450	0.996	270	0%	146	39%	-	-	-	-	-	HMMPfam_Nucleos_tra2_C
SLC28A3	64078	genome.wustl.edu	37	9	86928346	86928346	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022127.1	-1	provisional	p.N28	0.733	661	0%	372	36%	-	-	-	-	-	NULL
AGTPBP1	23287	genome.wustl.edu	37	9	88203388	88203388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015239.2	-1	validated	p.R870C	1.000	225	0%	105	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,superfamily_SSF53187
NAA35	60560	genome.wustl.edu	37	9	88573470	88573470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024635.3	+1	validated	p.R81Q	1.000	463	0%	233	31.8%	-	-	possibly_damaging(0.949)	tolerated(0.6)	neutral(0.398)	HMMPfam_Mak10
FAM75C1	441452	genome.wustl.edu	37	9	90535271	90535271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.S150F	0.000	549	0%	270	37%	-	-	-	-	-	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90535866	90535866	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.Q348H	0.002	780	0%	292	34.2%	-	-	-	-	-	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90536633	90536633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.R604Q	0.004	113	0%	68	72.1%	-	-	-	-	-	NULL
S1PR3	1903	genome.wustl.edu	37	9	91616517	91616517	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005226.2	+1	reviewed	p.I134	0.291	146	0%	101	15.8%	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SHC3	53358	genome.wustl.edu	37	9	91652938	91652938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016848.4	-1	validated	p.K542N	0.999	85	0%	59	28.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
SHC3	53358	genome.wustl.edu	37	9	91657043	91657043	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016848.4	-1	validated	p.E420*	1.000	258	0%	133	34.6%	-	-	-	-	-	NULL
SHC3	53358	genome.wustl.edu	37	9	91690058	91690058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016848.4	-1	validated	p.A232V	1.000	312	0%	160	35%	-	-	benign(0.066)	tolerated(0.11)	neutral(0.276)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SHC3	53358	genome.wustl.edu	37	9	91727526	91727526	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016848.4	-1	validated	p.E164*	1.000	205	0%	107	38.3%	-	-	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SECISBP2	79048	genome.wustl.edu	37	9	91940541	91940541	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024077.3	+1	reviewed	p.R128*	0.000	256	0%	139	28.8%	-	-	-	-	-	NULL
SECISBP2	79048	genome.wustl.edu	37	9	91943758	91943758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024077.3	+1	reviewed	p.S253Y	0.298	149	0%	57	31.6%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
SEMA4D	10507	genome.wustl.edu	37	9	92001348	92001348	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006378.3	-1	validated	p.I460	0.978	224	0%	141	32.6%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA4D	10507	genome.wustl.edu	37	9	92002351	92002351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006378.3	-1	validated	p.R427Q	1.000	219	0%	131	38.2%	-	-	possibly_damaging(0.938)	tolerated(0.11)	deleterious(0.655)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SYK	6850	genome.wustl.edu	37	9	93639946	93639946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003177.5	+1	reviewed	p.Q425H	1.000	266	0%	163	37.4%	-	-	benign(0.001)	tolerated(0.76)	neutral(0.001)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NFIL3	4783	genome.wustl.edu	37	9	94172680	94172680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005384.2	-1	validated	p.A113T	1.000	265	0%	154	34.4%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMSmart_SM00338,HMMPfam_bZIP_2
SPTLC1	10558	genome.wustl.edu	37	9	94794836	94794836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006415.2	-1	reviewed	p.R445W	0.707	174	0%	100	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
IARS	3376	genome.wustl.edu	37	9	95003149	95003149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002161.4	-1	reviewed	p.G1091D	0.993	286	0%	117	23.9%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
IARS	3376	genome.wustl.edu	37	9	95009821	95009821	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002161.4	-1	reviewed	p.R877*	1.000	356	0%	210	38.6%	-	-	-	-	-	superfamily_tRNAsyn_1a_bind
IARS	3376	genome.wustl.edu	37	9	95013074	95013074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002161.4	-1	reviewed	p.L784I	1.000	274	0%	154	37.7%	-	-	possibly_damaging(0.927)	tolerated(0.09)	deleterious(0.671)	superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1
IARS	3376	genome.wustl.edu	37	9	95036765	95036765	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002161.4	-1	reviewed	p.N311	1.000	156	0%	82	28%	-	-	-	-	-	HMMPfam_tRNA-synt_1,superfamily_ValRS_IleRS_edit,superfamily_SSF52374
NOL8	55035	genome.wustl.edu	37	9	95077576	95077576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017948.5	-1	validated	p.S444Y	0.000	104	0%	63	38.1%	-	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
NOL8	55035	genome.wustl.edu	37	9	95086340	95086340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017948.5	-1	validated	p.S35L	0.814	205	0%	151	37.7%	-	-	benign(0.092)	tolerated(0.35)	neutral(0.028)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
OGN	4969	genome.wustl.edu	37	9	95147920	95147920	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014057.3	-1	reviewed	p.P293	0.000	387	0.5%	175	39.4%	-	-	-	-	-	superfamily_L domain-like
ECM2	1842	genome.wustl.edu	37	9	95272313	95272313	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001393.2	-1	reviewed	p.L392	0.983	209	0%	100	37%	-	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
BICD2	23299	genome.wustl.edu	37	9	95481751	95481751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003800.1	-1	reviewed	p.E392D	1.000	108	0%	105	41.9%	-	-	benign(0.041)	tolerated(0.34)	neutral(0.025)	HMMPfam_BicD
BICD2	23299	genome.wustl.edu	37	9	95482839	95482839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003800.1	-1	reviewed	p.D269Y	1.000	289	0%	279	33%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_BicD
BICD2	23299	genome.wustl.edu	37	9	95483011	95483011	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003800.1	-1	reviewed	p.E211	1.000	157	0%	92	34.8%	-	-	-	-	-	HMMPfam_BicD
ZNF484	83744	genome.wustl.edu	37	9	95609488	95609488	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031486.1	-1	provisional	p.S527	0.852	302	0%	197	12.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FGD3	89846	genome.wustl.edu	37	9	95765248	95765248	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083536.1	+1	validated	p.L165	0.999	125	0%	92	21.7%	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
SUSD3	203328	genome.wustl.edu	37	9	95841837	95841837	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145006.2	+1	provisional	p.K170	0.002	50	0%	48	35.4%	-	-	-	-	-	NULL
WNK2	65268	genome.wustl.edu	37	9	95993325	95993325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006648.3	+1	reviewed	p.S337Y	1.000	186	0%	111	34.2%	-	-	unknown(0)	deleterious(0)	-	superfamily_Kinase_like,HMMPfam_Pkinase
FAM120A	23196	genome.wustl.edu	37	9	96291810	96291810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014612.3	+1	validated	p.H561R	1.000	138	0%	90	33.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM120A	23196	genome.wustl.edu	37	9	96305660	96305660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014612.3	+1	validated	p.R689K	1.000	81	0%	84	34.5%	-	-	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	NULL
PHF2	5253	genome.wustl.edu	37	9	96437264	96437264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005392.3	+1	reviewed	p.K894N	1.000	103	0%	67	40.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PTPDC1	138639	genome.wustl.edu	37	9	96870208	96870208	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152422.3	+1	reviewed	p.G801	0.000	107	0%	39	17.9%	-	-	-	-	-	NULL
FAM22F	54754	genome.wustl.edu	37	9	97081474	97081474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017561.1	-1	validated	p.R515Q	0.000	81	0%	53	34%	-	-	benign(0.174)	tolerated(0.21)	neutral(0.060)	NULL
FAM22F	54754	genome.wustl.edu	37	9	97088040	97088040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017561.1	-1	validated	p.V65M	0.005	68	0%	52	26.9%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
C9orf3	84909	genome.wustl.edu	37	9	97522384	97522384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032823.3	+1	provisional	p.K107Q	1.000	153	0%	93	43%	-	-	possibly_damaging(0.45)	tolerated(0.47)	neutral(0.159)	superfamily_SSF63737
MIR23B	407011	genome.wustl.edu	37	9	97847578	97847578	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384832	+1	known	NULL	1.000	106	0%	78	23.1%	-	-	-	-	-	-
FANCC	2176	genome.wustl.edu	37	9	97934322	97934322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000136.2	-1	reviewed	p.K151N	1.000	220	0%	95	49.5%	-	-	possibly_damaging(0.45)	deleterious(0.01)	deleterious(0.553)	HMMPfam_Fanconi_C
C9orf102	375748	genome.wustl.edu	37	9	98669477	98669477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010895.2	+1	validated	p.R249C	1.000	311	0%	131	37.4%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM22G	441457	genome.wustl.edu	37	9	99700193	99700193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001045477.2	+1	validated	p.F450L	0.364	727	0%	405	23%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM22G	441457	genome.wustl.edu	37	9	99700704	99700704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372322	+1	known	p.R500Q	0.001	119	0%	88	18.2%	-	-	benign(0.062)	tolerated(0.2)	neutral(0.053)	NULL
CTSL2	1515	genome.wustl.edu	37	9	99795309	99795309	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001333.2	-1	reviewed	p.S309	0.000	366	0.5%	221	42.1%	-	-	-	-	-	PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
C9orf156	51531	genome.wustl.edu	37	9	100672592	100672592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016481.3	-1	validated	p.R239I	0.000	413	0%	263	37.6%	-	-	benign(0.024)	deleterious(0.02)	neutral(0.384)	NULL
HEMGN	55363	genome.wustl.edu	37	9	100692668	100692668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018437.3	-1	validated	p.A337T	0.000	698	0%	384	33.9%	-	-	benign(0.022)	tolerated(0.34)	neutral(0.024)	NULL
HEMGN	55363	genome.wustl.edu	37	9	100692871	100692871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018437.3	-1	validated	p.G269D	0.007	750	0%	425	40.5%	-	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
HEMGN	55363	genome.wustl.edu	37	9	100698516	100698516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018437.3	-1	validated	p.R37I	1.000	755	0%	421	34%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
TBC1D2	55357	genome.wustl.edu	37	9	100983279	100983279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018421.3	-1	validated	p.V404M	1.000	169	0%	122	34.4%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
TBC1D2	55357	genome.wustl.edu	37	9	100983286	100983286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018421.3	-1	validated	p.Q401H	1.000	160	0%	111	39.6%	-	-	probably_damaging(0.956)	tolerated(0.07)	deleterious(0.719)	NULL
GABBR2	9568	genome.wustl.edu	37	9	101216284	101216284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005458.7	-1	reviewed	p.E405D	1.000	325	0%	197	24.9%	-	-	benign(0.019)	tolerated(0.06)	neutral(0.324)	HMMPfam_ANF_receptor,superfamily_SSF53822
GABBR2	9568	genome.wustl.edu	37	9	101304321	101304321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005458.7	-1	reviewed	p.S155Y	1.000	115	0%	69	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_SSF53822
GALNT12	79695	genome.wustl.edu	37	9	101589195	101589195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024642.3	+1	validated	p.E235K	1.000	96	0%	102	40.2%	-	-	benign(0.051)	tolerated(0.3)	neutral(0.032)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
KRT8P11	347265	genome.wustl.edu	37	9	102067737	102067737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409686	+1	known	p.N115T	1.000	134	0%	62	30.6%	-	-	benign(0.426)	deleterious(0)	deleterious(0.583)	HMMPfam_Filament
TEX10	54881	genome.wustl.edu	37	9	103108402	103108402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.I363M	1.000	229	0%	116	17.2%	-	-	probably_damaging(0.979)	deleterious(0.05)	deleterious(0.767)	NULL
TEX10	54881	genome.wustl.edu	37	9	103108519	103108519	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.I324	1.000	249	0%	108	41.7%	-	-	-	-	-	NULL
TEX10	54881	genome.wustl.edu	37	9	103109480	103109480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.R130Q	1.000	334	0%	159	36.5%	-	-	probably_damaging(0.97)	tolerated(0.23)	neutral(0.454)	superfamily_ARM-type_fold
LPPR1	54886	genome.wustl.edu	37	9	104032242	104032242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017753.2	+1	reviewed	p.F48L	1.000	251	0%	143	31.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LPPR1	54886	genome.wustl.edu	37	9	104032317	104032317	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017753.2	+1	reviewed	p.L73	1.000	195	0%	148	30.4%	-	-	-	-	-	NULL
LPPR1	54886	genome.wustl.edu	37	9	104079678	104079678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017753.2	+1	reviewed	p.T282M	0.920	198	0%	97	30.9%	-	-	benign(0.024)	tolerated(0.11)	neutral(0.273)	NULL
BAAT	570	genome.wustl.edu	37	9	104125258	104125258	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127610.1	-1	reviewed	p.G237*	0.836	150	0%	77	24.7%	-	-	-	-	-	HMMPfam_BAAT_C,superfamily_SSF53474
BAAT	570	genome.wustl.edu	37	9	104130513	104130513	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127610.1	-1	reviewed	p.F186	1.000	143	0%	75	12%	-	-	-	-	-	superfamily_SSF53474
C9orf125	84302	genome.wustl.edu	37	9	104238361	104238361	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032342.1	-1	provisional	p.L338	0.959	164	0%	109	40.4%	-	-	-	-	-	NULL
RNF20	56254	genome.wustl.edu	37	9	104314967	104314967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.E611D	0.991	360	0%	151	31.8%	-	-	possibly_damaging(0.95)	tolerated(0.36)	neutral(0.414)	NULL
RNF20	56254	genome.wustl.edu	37	9	104324563	104324563	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.K929N	1.000	206	0%	118	44.9%	-	-	benign(0.345)	deleterious(0.04)	neutral(0.458)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
GRIN3A	116443	genome.wustl.edu	37	9	104449192	104449192	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.C330	0.195	334	0%	161	41%	-	-	-	-	-	superfamily_SSF53822
GRIN3A	116443	genome.wustl.edu	37	9	104499680	104499680	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.S194	0.210	149	0.7%	82	36.6%	-	-	-	-	-	superfamily_SSF53822
GRIN3A	116443	genome.wustl.edu	37	9	104499750	104499750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.S171L	0.993	206	0%	105	41%	-	-	benign(0.139)	deleterious(0.02)	neutral(0.395)	superfamily_SSF53822
OR13F1	138805	genome.wustl.edu	37	9	107267028	107267028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004485.1	+1	provisional	p.S162Y	0.220	275	0%	196	38.8%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_7tm_1,superfamily_SSF81321
OR13C9	286362	genome.wustl.edu	37	9	107379690	107379690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001956.1	-1	provisional	p.E266K	0.000	388	0%	253	11.9%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_7tm_1,superfamily_SSF81321
ABCA1	19	genome.wustl.edu	37	9	107560837	107560837	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005502.2	-1	reviewed	p.I1662	1.000	196	0%	149	36.9%	-	-	-	-	-	NULL
ABCA1	19	genome.wustl.edu	37	9	107571790	107571790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005502.2	-1	reviewed	p.D1411Y	0.406	390	0%	188	21.8%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
SLC44A1	23446	genome.wustl.edu	37	9	108136967	108136967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080546.3	+1	validated	p.R528Q	1.000	347	0%	206	25.7%	-	-	possibly_damaging(0.91)	tolerated(1)	neutral(0.362)	HMMPfam_DUF580
FSD1L	83856	genome.wustl.edu	37	9	108268760	108268760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145313.1	+1	validated	p.E223K	1.000	220	0%	145	31.7%	-	-	possibly_damaging(0.912)	deleterious(0.02)	deleterious(0.746)	HMMPfam_fn3,superfamily_Fibronectin type III
FKTN	2218	genome.wustl.edu	37	9	108370218	108370218	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079802.1	+1	reviewed	p.R256*	1.000	184	0%	105	26.7%	-	-	-	-	-	NULL
ZNF462	58499	genome.wustl.edu	37	9	109687961	109687961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.P590S	1.000	366	0%	317	39.4%	-	-	unknown(0)	deleterious(0)	-	superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109688665	109688665	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.I824	0.909	184	0%	98	38.8%	-	-	-	-	-	superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109689082	109689082	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.V963	0.230	134	0%	84	33.3%	-	-	-	-	-	superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109734443	109734443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.F2195L	1.000	217	0%	133	40.6%	-	-	possibly_damaging(0.94)	tolerated(0.66)	neutral(0.388)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
IKBKAP	8518	genome.wustl.edu	37	9	111641764	111641764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003640.3	-1	reviewed	p.M1178I	1.000	276	0%	170	12.9%	-	-	benign(0.003)	tolerated(0.47)	neutral(0.011)	NULL
EPB41L4B	54566	genome.wustl.edu	37	9	111976046	111976046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019114.3	-1	validated	p.K562N	1.000	341	0.3%	202	32.7%	-	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	NULL
PALM2	114299	genome.wustl.edu	37	9	112705217	112705217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053016.5	+1	validated	p.V252M	0.000	117	0%	72	34.7%	-	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Paralemmin
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112898523	112898523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007203.4	+1	validated	p.E233D	1.000	233	0%	115	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112899206	112899206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007203.4	+1	validated	p.A461V	1.000	162	0%	65	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SVEP1	79987	genome.wustl.edu	37	9	113171058	113171058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.F2274L	0.087	251	0.4%	139	33.8%	-	-	benign(0.139)	tolerated(0.6)	neutral(0.017)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113171166	113171166	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.V2238	0.001	184	0%	124	35.5%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113192572	113192572	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.L1838	0.056	236	0%	113	45.1%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113192656	113192656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.E1810K	0.042	208	0%	105	74.3%	-	-	benign(0.001)	tolerated(0.92)	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113213582	113213582	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.V1296	0.261	338	0%	216	38.4%	-	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
SVEP1	79987	genome.wustl.edu	37	9	113228255	113228255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.S1071L	1.000	209	0%	121	36.4%	-	-	possibly_damaging(0.646)	tolerated(0.17)	neutral(0.285)	superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3
SVEP1	79987	genome.wustl.edu	37	9	113276235	113276235	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.T372	0.992	214	0%	123	35%	-	-	-	-	-	superfamily_Growth factor receptor domain,PatternScan_EGF_2
MUSK	4593	genome.wustl.edu	37	9	113563158	113563158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005592.3	+1	reviewed	p.L834I	1.000	111	0.9%	77	31.2%	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LPAR1	1902	genome.wustl.edu	37	9	113704387	113704387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001401.3	-1	reviewed	p.R36Q	1.000	110	0%	52	28.8%	-	-	possibly_damaging(0.864)	tolerated(0.26)	neutral(0.369)	superfamily_Family A G protein-coupled receptor-like
OR2K2	26248	genome.wustl.edu	37	9	114089811	114089811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205859.1	-1	provisional	p.K301N	0.507	224	0%	142	34.5%	-	-	benign(0.012)	deleterious(0.03)	neutral(0.365)	superfamily_Family A G protein-coupled receptor-like
OR2K2	26248	genome.wustl.edu	37	9	114090077	114090077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205859.1	-1	provisional	p.V213F	0.377	226	0.4%	122	38.5%	-	-	benign(0.341)	deleterious(0)	deleterious(0.552)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KIAA0368	23392	genome.wustl.edu	37	9	114206743	114206743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080398.1	-1	provisional	p.R240H	1.000	459	0%	226	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
DNAJC25	548645	genome.wustl.edu	37	9	114411886	114411886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015882.2	+1	provisional	p.R215C	1.000	135	0%	60	18.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SUSD1	64420	genome.wustl.edu	37	9	114804226	114804233	+	Frame_Shift_Del	DEL	GCATGAGT	GCATGAGT	-	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	GCATGAGT	GCATGAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374263	-1	known	p.H741fs	0.019:0.000:0.001:0.028:0.089:0.138:0.104:0.001	-	-	-	-	-	-	-	-	-	NULL
SUSD1	64420	genome.wustl.edu	37	9	114874078	114874078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374263	-1	known	p.R343C	0.974	564	0%	415	14.9%	-	-	benign(0.118)	deleterious(0.01)	neutral(0.415)	NULL
ZFP37	7539	genome.wustl.edu	37	9	115805634	115805634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003408.1	-1	provisional	p.E422K	0.596	298	0%	175	36.6%	-	-	probably_damaging(0.982)	tolerated(0.61)	neutral(0.430)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR31	114987	genome.wustl.edu	37	9	116083831	116083831	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012361.1	-1	reviewed	p.E200*	0.998	421	0%	230	15.7%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RGS3	5998	genome.wustl.edu	37	9	116246422	116246422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144488.4	+1	reviewed	p.S177Y	1.000	63	0%	57	24.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
AMBP	259	genome.wustl.edu	37	9	116836362	116836362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001633.3	-1	reviewed	p.K136N	1.000	393	0%	334	29.3%	-	-	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMPfam_Lipocalin,superfamily_Calycin
AKNA	80709	genome.wustl.edu	37	9	117122196	117122196	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030767.4	-1	validated	p.V757	0.244	139	0%	97	45.4%	-	-	-	-	-	NULL
TNFSF15	9966	genome.wustl.edu	37	9	117552767	117552767	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005118.2	-1	reviewed	p.E241*	1.000	247	0%	147	34%	-	-	-	-	-	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
TNC	3371	genome.wustl.edu	37	9	117838845	117838845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.A895V	1.000	352	0%	194	11.9%	-	-	possibly_damaging(0.945)	tolerated(0.14)	deleterious(0.639)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117849293	117849293	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.F239	0.881	59	0%	59	35.6%	-	-	-	-	-	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2
TNC	3371	genome.wustl.edu	37	9	117849421	117849421	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.R197*	0.002	95	0%	79	46.8%	-	-	-	-	-	HMMSmart_EGF,HMMPfam_EGF_2
TNC	3371	genome.wustl.edu	37	9	117852999	117852999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.F100S	1.000	86	0%	61	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PAPPA	5069	genome.wustl.edu	37	9	118997568	118997568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002581.3	+1	reviewed	p.S795Y	1.000	150	0%	123	33.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Peptidase_M43,superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119097245	119097245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002581.3	+1	reviewed	p.S1168L	1.000	87	0%	57	36.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119129940	119129940	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002581.3	+1	reviewed	p.T1504	1.000	143	0%	108	28.7%	-	-	-	-	-	superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119144714	119144714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002581.3	+1	reviewed	p.R1573Q	1.000	155	0%	103	40.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Notch,HMMSmart_NL,superfamily_SSF55486
ASTN2	23245	genome.wustl.edu	37	9	119202978	119202978	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417725	-1	known	p.R13*	1.000	418	0%	190	41.1%	-	-	possibly_damaging(0.839)	deleterious(0.05)	deleterious(0.666)	NULL
ASTN2	23245	genome.wustl.edu	37	9	119625955	119625955	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.F649	0.993	284	0%	123	40.7%	-	-	-	-	-	NULL
ASTN2	23245	genome.wustl.edu	37	9	119802182	119802182	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.L447	1.000	167	0%	98	28.6%	-	-	-	-	-	NULL
TLR4	7099	genome.wustl.edu	37	9	120475166	120475166	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138554.3	+1	reviewed	p.E254*	0.159	124	0%	56	32.1%	-	-	-	-	-	superfamily_L domain-like
TLR4	7099	genome.wustl.edu	37	9	120476223	120476223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138554.3	+1	reviewed	p.R606Q	0.001	299	0%	228	36.4%	-	-	benign(0.004)	tolerated(1)	-	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
DBC1	1620	genome.wustl.edu	37	9	121930121	121930121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014618.2	-1	validated	p.E509D	1.000	223	0%	162	33.3%	-	-	benign(0.388)	tolerated(1)	neutral(0.124)	NULL
DBC1	1620	genome.wustl.edu	37	9	121976401	121976401	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014618.2	-1	validated	p.E240*	1.000	188	0%	133	42.9%	-	-	-	-	-	HMMSmart_SM00457
DBC1	1620	genome.wustl.edu	37	9	122001016	122001016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014618.2	-1	validated	p.P201H	1.000	176	0%	113	31%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00457
CDK5RAP2	55755	genome.wustl.edu	37	9	123201748	123201748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.Q1217H	0.948	335	0%	183	37.7%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123290168	123290168	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.E305D	1.000	650	0%	331	34.7%	-	-	possibly_damaging(0.837)	deleterious(0.04)	deleterious(0.668)	NULL
PSMD5	5711	genome.wustl.edu	37	9	123595733	123595733	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005047.2	-1	reviewed	p.E59*	1.000	132	0%	57	22.8%	-	-	-	-	-	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
PHF19	26147	genome.wustl.edu	37	9	123636302	123636302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015651.1	-1	validated	p.E75K	1.000	203	0%	91	31.9%	-	-	possibly_damaging(0.945)	deleterious(0.02)	deleterious(0.772)	HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT
C5	727	genome.wustl.edu	37	9	123739055	123739055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001735.2	-1	reviewed	p.D1263Y	0.923	283	0%	171	35.1%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp
C5	727	genome.wustl.edu	37	9	123760036	123760036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001735.2	-1	reviewed	p.S860F	0.567	223	0%	112	37.5%	-	-	possibly_damaging(0.952)	tolerated(0.18)	neutral(0.452)	NULL
CNTRL	11064	genome.wustl.edu	37	9	123920070	123920070	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.E1517*	1.000	276	0%	109	33%	-	-	-	-	-	NULL
MORN5	254956	genome.wustl.edu	37	9	124922292	124922292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198469.2	+1	validated	p.D14G	0.716	444	0%	200	27.5%	-	-	benign(0.025)	tolerated(0.17)	neutral(0.060)	HMMPfam_MORN,HMMSmart_MORN,superfamily_SSF82185
MORN5	254956	genome.wustl.edu	37	9	124936808	124936808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198469.2	+1	validated	p.R114I	1.000	309	0%	155	35.5%	-	-	probably_damaging(0.992)	tolerated(0.11)	deleterious(0.719)	superfamily_SSF82185
OR1J1	347168	genome.wustl.edu	37	9	125239745	125239745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004451.1	-1	provisional	p.A154V	0.392	196	0%	139	40.3%	-	-	benign(0.017)	tolerated(0.18)	neutral(0.057)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L8	138881	genome.wustl.edu	37	9	125330095	125330095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004454.1	-1	provisional	p.R221Q	0.000	234	0%	86	29.1%	-	-	benign(0.09)	tolerated(0.36)	neutral(0.026)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L3	26735	genome.wustl.edu	37	9	125437654	125437654	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005234.1	+1	provisional	p.L82	0.002	391	0%	235	38.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L3	26735	genome.wustl.edu	37	9	125438186	125438186	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005234.1	+1	provisional	p.L260	0.014	261	0%	167	33.5%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L6	392390	genome.wustl.edu	37	9	125512083	125512083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004453.2	+1	validated	p.S22F	0.000	461	0%	257	24.9%	-	-	possibly_damaging(0.565)	deleterious(0)	deleterious(0.637)	NULL
RABGAP1	23637	genome.wustl.edu	37	9	125748493	125748493	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012197.3	+1	validated	e3-1	1.000	152	0%	147	38.1%	-	-	-	-	-	-
RABGAP1	23637	genome.wustl.edu	37	9	125772639	125772639	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012197.3	+1	validated	p.Q461*	1.000	231	0%	105	35.2%	-	-	-	-	-	NULL
GPR21	2844	genome.wustl.edu	37	9	125797750	125797750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005294.1	+1	provisional	p.V302A	1.000	171	0%	95	36.8%	-	-	benign(0.095)	deleterious(0.02)	neutral(0.390)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RABGAP1	23637	genome.wustl.edu	37	9	125835911	125835911	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012197.3	+1	validated	p.F688	1.000	179	0%	129	24%	-	-	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
STRBP	55342	genome.wustl.edu	37	9	125887884	125887884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018387.4	-1	validated	p.F671L	1.000	506	0%	218	37.2%	-	-	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	NULL
NR5A1	2516	genome.wustl.edu	37	9	127262511	127262511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004959.4	-1	reviewed	p.R243H	0.991	13	0%	14	42.9%	-	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	superfamily_Nuclear receptor ligand-binding domain
NR6A1	2649	genome.wustl.edu	37	9	127287104	127287104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033334.2	-1	reviewed	p.R417Q	1.000	266	0%	120	12.5%	-	-	probably_damaging(0.959)	tolerated(0.05)	deleterious(0.748)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
NR6A1	2649	genome.wustl.edu	37	9	127302449	127302449	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033334.2	-1	reviewed	p.I153	0.699	331	0%	239	36.4%	-	-	-	-	-	superfamily_Nuclear receptor ligand-binding domain
OLFML2A	169611	genome.wustl.edu	37	9	127572682	127572682	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182487.2	+1	validated	p.F650	0.871	123	0%	83	31.3%	-	-	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
GOLGA1	2800	genome.wustl.edu	37	9	127685448	127685448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002077.3	-1	reviewed	p.L163I	1.000	446	0%	254	33.1%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128064445	128064445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015635.2	+1	validated	p.E123D	1.000	254	0%	174	46.6%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	superfamily_Rho_GAP
LMX1B	4010	genome.wustl.edu	37	9	129455575	129455575	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002316.3	+1	reviewed	p.F215	0.997	46	0%	37	16.2%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
RALGPS1	9649	genome.wustl.edu	37	9	129815154	129815154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014636.1	+1	provisional	p.S140Y	1.000	511	0%	226	33.2%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
GARNL3	84253	genome.wustl.edu	37	9	130117645	130117645	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032293.4	+1	validated	p.K610T	1.000	258	0%	129	42.6%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_CNH,HMMSmart_SM00036
FAM129B	64855	genome.wustl.edu	37	9	130270473	130270473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022833.2	-1	validated	p.D481N	1.000	80	0%	32	21.9%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
FAM129B	64855	genome.wustl.edu	37	9	130289514	130289514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022833.2	-1	validated	p.V92M	1.000	125	0%	107	34.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PH,superfamily_SSF50729
TTC16	158248	genome.wustl.edu	37	9	130485416	130485416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144965.1	+1	provisional	p.D226N	0.981	23	0%	23	26.1%	-	-	unknown(0)	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
TOR2A	27433	genome.wustl.edu	37	9	130495840	130495840	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085347.1	-1	validated	e3-1	1.000	65	0%	56	35.7%	-	-	-	-	-	-
SH2D3C	10044	genome.wustl.edu	37	9	130513577	130513577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170600.2	-1	validated	p.F186L	1.000	114	0%	72	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDK9	1025	genome.wustl.edu	37	9	130551520	130551520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001261.3	+1	validated	p.R273W	1.000	83	1.2%	53	47.2%	-	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENG	2022	genome.wustl.edu	37	9	130587536	130587536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114753.1	-1	reviewed	p.D264N	0.009	51	0%	45	40%	-	-	benign(0.108)	tolerated(0.08)	neutral(0.308)	NULL
PTGES2	80142	genome.wustl.edu	37	9	130886805	130886805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025072.5	-1	reviewed	p.I168V	1.000	533	0%	239	13%	-	-	benign(0.266)	deleterious(0.01)	neutral(0.434)	superfamily_Thiordxn-like_fd
GOLGA2	2801	genome.wustl.edu	37	9	131021523	131021523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004486.4	-1	reviewed	p.V647M	0.969	90	0%	93	37.6%	-	-	benign(0.001)	tolerated(1)	-	NULL
SLC27A4	10999	genome.wustl.edu	37	9	131114981	131114981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005094.3	+1	reviewed	p.F314L	1.000	140	0%	82	31.7%	-	-	possibly_damaging(0.73)	deleterious(0)	deleterious(0.711)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
GLE1	2733	genome.wustl.edu	37	9	131285937	131285937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003722.1	+1	reviewed	p.R237W	1.000	38	0%	38	34.2%	-	-	benign(0.068)	deleterious(0.01)	neutral(0.410)	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131329153	131329153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.R45Q	1.000	93	0%	53	35.8%	-	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_Spectrin,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131395574	131395574	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.F2465	0.998	86	0%	52	44.2%	-	-	-	-	-	HMMPfam_efhand_Ca_insen,superfamily_SSF47473
LRRC8A	56262	genome.wustl.edu	37	9	131669935	131669935	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127244.1	+1	reviewed	p.F164	0.975	135	0%	67	11.9%	-	-	-	-	-	NULL
DOLK	22845	genome.wustl.edu	37	9	131708126	131708126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014908.3	-1	reviewed	p.S486Y	1.000	194	0.5%	122	39.3%	-	-	benign(0.29)	tolerated(0.38)	neutral(0.107)	NULL
DOLK	22845	genome.wustl.edu	37	9	131708387	131708387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014908.3	-1	reviewed	p.R399Q	1.000	236	0%	161	36.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NUP188	23511	genome.wustl.edu	37	9	131730845	131730845	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015354.1	+1	validated	p.E216*	1.000	314	0%	189	35.4%	-	-	-	-	-	HMMPfam_Nup188
PPP2R4	5524	genome.wustl.edu	37	9	131904902	131904902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435305	+1	known	p.R60I	0.679	69	0%	61	39.3%	-	-	possibly_damaging(0.539)	deleterious(0.02)	deleterious(0.566)	NULL
FNBP1	23048	genome.wustl.edu	37	9	132658144	132658144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015033.2	-1	reviewed	p.E607K	1.000	266	0.4%	157	35%	-	-	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
GPR107	57720	genome.wustl.edu	37	9	132891007	132891007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136557.1	+1	validated	p.S558Y	1.000	388	0%	222	35.6%	-	-	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
LAMC3	10319	genome.wustl.edu	37	9	133932425	133932425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006059.3	+1	reviewed	p.F683L	1.000	51	0%	37	48.6%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	PatternScan_EGF_LAM_1,PatternScan_EGF_1,PatternScan_EGF_2
FAM78A	286336	genome.wustl.edu	37	9	134151379	134151379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033387.3	-1	validated	p.R63H	1.000	75	0%	55	43.6%	-	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
POMT1	10585	genome.wustl.edu	37	9	134398379	134398379	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007171.3	+1	reviewed	p.C710	0.175	59	0%	51	47.1%	-	-	-	-	-	NULL
UCK1	83549	genome.wustl.edu	37	9	134404410	134404410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031432.2	-1	validated	p.R175H	0.047	70	0%	52	44.2%	-	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_PRK,superfamily_SSF52540
RAPGEF1	2889	genome.wustl.edu	37	9	134459920	134459920	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198679.1	-1	reviewed	p.F931	1.000	162	0%	128	22.7%	-	-	-	-	-	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
RAPGEF1	2889	genome.wustl.edu	37	9	134497277	134497277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198679.1	-1	reviewed	p.M605T	1.000	232	0%	147	31.3%	-	-	benign(0.164)	deleterious(0)	neutral(0.460)	NULL
MED27	9442	genome.wustl.edu	37	9	134952878	134952878	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004269.2	-1	reviewed	p.K100T	1.000	423	0%	227	37.9%	-	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	NULL
SETX	23064	genome.wustl.edu	37	9	135156869	135156869	+	Silent	SNP	C	C	T	rs143035135	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.P2213	1.000	197	0%	74	48.6%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SETX	23064	genome.wustl.edu	37	9	135203322	135203322	+	Missense_Mutation	SNP	C	C	A	rs12344006	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.K1221N	0.007	213	0%	87	29.9%	-	-	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	NULL
SETX	23064	genome.wustl.edu	37	9	135203741	135203741	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.E1082*	1.000	249	0%	130	32.3%	-	-	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135211830	135211830	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.E191*	1.000	241	0%	109	38.5%	-	-	-	-	-	NULL
TTF1	7270	genome.wustl.edu	37	9	135251433	135251433	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007344.2	-1	validated	p.R863*	0.000	553	0%	294	33.3%	-	-	-	-	-	NULL
TTF1	7270	genome.wustl.edu	37	9	135266210	135266210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007344.2	-1	validated	p.R666C	0.600	209	0%	177	28.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SANT
TTF1	7270	genome.wustl.edu	37	9	135277858	135277858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007344.2	-1	validated	p.K117N	0.087	251	0%	158	42.4%	-	-	benign(0.223)	deleterious(0.01)	neutral(0.428)	NULL
C9orf171	389799	genome.wustl.edu	37	9	135357739	135357739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207417.1	+1	predicted	p.D80Y	0.000	285	0.4%	142	35.9%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
BARHL1	56751	genome.wustl.edu	37	9	135458451	135458451	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020064.3	+1	validated	p.S89	0.998	34	0%	21	33.3%	-	-	-	-	-	NULL
AK8	158067	genome.wustl.edu	37	9	135750553	135750553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152572.2	-1	validated	p.E40K	0.381	485	0%	303	44.9%	-	-	benign(0.005)	tolerated(0.29)	neutral(0.029)	NULL
TSC1	7248	genome.wustl.edu	37	9	135786448	135786448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000368.4	-1	reviewed	p.S361Y	1.000	418	0%	154	11.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hamartin
GFI1B	8328	genome.wustl.edu	37	9	135864471	135864471	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004188.4	+1	validated	p.L178	0.650	40	0%	39	33.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GTF3C5	9328	genome.wustl.edu	37	9	135932281	135932281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122823.1	+1	validated	p.R467L	1.000	86	0%	46	21.7%	-	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
LOC100289412	100289412	genome.wustl.edu	37	9	135983699	135983699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344240.1	+1	model	p.P70Q	0.001	89	0%	62	40.3%	-	-	-	-	-	NULL
REXO4	57109	genome.wustl.edu	37	9	136273933	136273933	+	Missense_Mutation	SNP	G	G	A	rs186019248	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020385.2	-1	validated	p.R345W	0.983	452	0%	219	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
ADAMTS13	11093	genome.wustl.edu	37	9	136305613	136305613	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139025.3	+1	reviewed	p.I645	0.764	37	0%	41	36.6%	-	-	-	-	-	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136324376	136324376	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024514.1	+1	reviewed	NULL	0.000	35	0%	16	31.2%	-	-	-	-	-	-
SLC2A6	11182	genome.wustl.edu	37	9	136343502	136343502	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017585.3	-1	validated	p.F43	0.987	276	0%	130	20%	-	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
VAV2	7410	genome.wustl.edu	37	9	136640094	136640094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134398.1	-1	reviewed	p.R700W	1.000	88	0%	81	18.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
VAV2	7410	genome.wustl.edu	37	9	136662891	136662891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134398.1	-1	reviewed	p.A293T	1.000	201	0%	127	27.6%	-	-	possibly_damaging(0.729)	deleterious(0)	deleterious(0.710)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
BRD3	8019	genome.wustl.edu	37	9	136916701	136916701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007371.3	-1	reviewed	p.A161V	0.958	144	0.7%	73	34.2%	-	-	benign(0.089)	tolerated(0.11)	neutral(0.278)	NULL
RXRA	6256	genome.wustl.edu	37	9	137328312	137328312	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002957.4	+1	reviewed	e10-1	1.000	134	0%	101	34.7%	-	-	-	-	-	-
COL5A1	1289	genome.wustl.edu	37	9	137703184	137703184	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000093.3	+1	reviewed	e45-1	1.000	142	0%	117	39.3%	-	-	-	-	-	-
FCN1	2219	genome.wustl.edu	37	9	137803059	137803059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002003.3	-1	reviewed	p.A218V	1.000	405	0%	196	37.8%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
KCNT1	57582	genome.wustl.edu	37	9	138641959	138641959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020822.2	+1	validated	p.F90L	1.000	176	0%	78	33.3%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
KCNT1	57582	genome.wustl.edu	37	9	138660716	138660716	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020822.2	+1	validated	p.F481	0.472	167	0%	105	48.6%	-	-	-	-	-	superfamily_NAD(P)-bd
CAMSAP1	157922	genome.wustl.edu	37	9	138774901	138774901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015447.3	-1	validated	p.D62N	1.000	182	0%	122	30.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
QSOX2	169714	genome.wustl.edu	37	9	139116752	139116752	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181701.3	-1	validated	p.F145V	1.000	268	0%	109	38.5%	-	-	unknown(0)	tolerated(0.65)	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
SEC16A	9919	genome.wustl.edu	37	9	139347912	139347912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014866.1	-1	validated	p.E2043K	0.404	140	0%	52	40.4%	-	-	possibly_damaging(0.875)	deleterious(0.04)	deleterious(0.689)	NULL
SEC16A	9919	genome.wustl.edu	37	9	139353673	139353673	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014866.1	-1	validated	p.F1774	0.995	218	0%	128	29.7%	-	-	-	-	-	NULL
SEC16A	9919	genome.wustl.edu	37	9	139369325	139369325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014866.1	-1	validated	p.E915K	0.914	160	0%	87	21.8%	-	-	unknown(0)	deleterious(0)	-	NULL
FBXW5	54461	genome.wustl.edu	37	9	139835488	139835488	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018998.2	-1	reviewed	p.D531	0.263	70	0%	75	37.3%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PTGDS	5730	genome.wustl.edu	37	9	139875184	139875184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444903	+1	known	p.S28I	0.000	111	0%	75	25.3%	-	-	unknown(0)	-	-	NULL
C9orf142	286257	genome.wustl.edu	37	9	139888114	139888114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183241.1	+1	predicted	p.K191N	0.997	203	0%	109	31.2%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ABCA2	20	genome.wustl.edu	37	9	139905964	139905964	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000479446	-1	known	p.S1248L	0.862	203	0%	132	32.6%	-	-	-	-	-	NULL
ABCA2	20	genome.wustl.edu	37	9	139909379	139909379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212533.2	-1	reviewed	p.E1320K	1.000	76	0%	40	45%	-	-	benign(0.229)	tolerated(0.64)	neutral(0.026)	NULL
SLC34A3	142680	genome.wustl.edu	37	9	140127128	140127128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080877.2	+1	reviewed	p.L93I	1.000	33	0%	58	12.1%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Na_Pi_cotrans
PNPLA7	375775	genome.wustl.edu	37	9	140357238	140357238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.V1131M	0.996	198	0%	158	17.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FabD/lysophospholipase-like
PNPLA7	375775	genome.wustl.edu	37	9	140358849	140358849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.F1033L	1.000	175	0%	107	39.3%	-	-	possibly_damaging(0.481)	tolerated(0.3)	neutral(0.188)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
PNPLA7	375775	genome.wustl.edu	37	9	140391645	140391645	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.V669	0.900	28	0%	26	26.9%	-	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
PNPLA7	375775	genome.wustl.edu	37	9	140395199	140395199	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.T567	1.000	38	0%	34	26.5%	-	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
PNPLA7	375775	genome.wustl.edu	37	9	140437202	140437202	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.I186	1.000	56	0%	53	35.8%	-	-	-	-	-	HMMSmart_SM00100,superfamily_cAMP-binding domain-like
ARRDC1	92714	genome.wustl.edu	37	9	140509146	140509146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152285.2	+1	validated	p.A311T	0.259	38	0%	35	42.9%	-	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_Ig_E-set
EHMT1	79813	genome.wustl.edu	37	9	140611326	140611326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000460843	+1	known	p.D112N	0.114	118	0%	60	16.7%	-	-	benign(0.002)	tolerated(0.3)	neutral(0.029)	NULL
CACNA1B	774	genome.wustl.edu	37	9	140878700	140878700	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000718.2	+1	validated	p.T589	0.205	114	0%	114	20.2%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	140952615	140952615	+	Silent	SNP	C	C	T	rs35538393		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000718.2	+1	validated	p.F1407	0.788	1162	0.1%	670	36%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	141008912	141008912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000718.2	+1	validated	p.Q1873H	0.968	136	0%	79	38%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ca_chan_IQ
CACNA1B	774	genome.wustl.edu	37	9	141016214	141016214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000277551	+1	known	p.G2199D	1.000	49	0%	30	23.3%	-	-	unknown(0)	tolerated(0.3)	-	NULL
DIP2C	22982	genome.wustl.edu	37	10	408517	408517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014974.2	-1	reviewed	p.L903M	1.000	196	0%	114	37.7%	-	-	benign(0.195)	deleterious(0.04)	neutral(0.367)	superfamily_SSF56801
DIP2C	22982	genome.wustl.edu	37	10	445069	445069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014974.2	-1	reviewed	p.E414K	1.000	92	0%	70	10%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_AMP-binding,superfamily_SSF56801
LARP4B	23185	genome.wustl.edu	37	10	875487	875487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015155.1	-1	provisional	p.K321N	1.000	193	0%	129	32.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GTPBP4	23560	genome.wustl.edu	37	10	1038582	1038582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012341.2	+1	reviewed	p.D68Y	1.000	140	0%	86	48.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR37	22884	genome.wustl.edu	37	10	1118121	1118121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014023.3	+1	reviewed	p.S9L	1.000	242	0%	143	28.7%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
PFKP	5214	genome.wustl.edu	37	10	3150944	3150944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002627.3	+1	validated	p.V308M	1.000	267	0%	140	46.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE
PITRM1	10531	genome.wustl.edu	37	10	3201218	3201218	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014889.2	-1	validated	p.E342*	1.000	237	0%	137	53.3%	-	-	-	-	-	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
PITRM1	10531	genome.wustl.edu	37	10	3209219	3209219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014889.2	-1	validated	p.E59K	1.000	145	0%	89	46.1%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	superfamily_LuxS/MPP-like metallohydrolase
KLF6	1316	genome.wustl.edu	37	10	3824025	3824025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001300.5	-1	reviewed	p.W162G	0.993	112	0%	77	49.4%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
AKR1E2	83592	genome.wustl.edu	37	10	4872900	4872900	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040177.1	+1	provisional	p.E25*	0.117	400	0%	207	27.5%	-	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
AKR1C1	1645	genome.wustl.edu	37	10	5014882	5014882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001353.5	+1	reviewed	p.R263C	0.984	484	0.2%	314	28.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
AKR1C2	1646	genome.wustl.edu	37	10	5041445	5041445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001354.4	-1	reviewed	p.D132Y	0.729	1095	0.1%	714	29.3%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
AKR1CL1	340811	genome.wustl.edu	37	10	5204829	5204829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380510	-1	known	p.F83C	0.998	368	0%	219	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
TUBAL3	79861	genome.wustl.edu	37	10	5437319	5437319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024803.2	-1	validated	p.D123N	0.992	109	0%	72	45.8%	-	-	benign(0.038)	deleterious(0)	neutral(0.447)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
FAM208B	54906	genome.wustl.edu	37	10	5762726	5762726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.R12H	0.000	295	0%	184	35.9%	-	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
FAM208B	54906	genome.wustl.edu	37	10	5781667	5781667	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.E512*	0.012	260	0%	152	13.8%	-	-	-	-	-	NULL
FAM208B	54906	genome.wustl.edu	37	10	5790862	5790862	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.L1826	0.405	159	0%	137	32.8%	-	-	-	-	-	NULL
FBXO18	84893	genome.wustl.edu	37	10	5957464	5957464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032807.3	+1	reviewed	p.E550K	0.004	108	0%	67	13.4%	-	-	benign(0.003)	tolerated(0.33)	neutral(0.024)	superfamily_SSF52540
FBXO18	84893	genome.wustl.edu	37	10	5969446	5969446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032807.3	+1	reviewed	p.R975Q	1.000	442	0%	227	15.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
RBM17	84991	genome.wustl.edu	37	10	6146974	6146974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145547.1	+1	reviewed	p.D107E	0.997	660	0%	248	35.1%	-	-	benign(0.008)	tolerated(1)	-	NULL
RBM17	84991	genome.wustl.edu	37	10	6151957	6151957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145547.1	+1	reviewed	p.D191Y	1.000	361	0%	191	25.7%	-	-	benign(0.267)	tolerated(0.26)	neutral(0.062)	NULL
PFKFB3	5209	genome.wustl.edu	37	10	6263367	6263367	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450232	+1	known	p.R1C	0.745	48	0%	37	45.9%	-	-	-	-	-	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7290522	7290522	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029880.1	-1	provisional	p.A320	0.998	178	0%	113	37.2%	-	-	-	-	-	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
ITIH5	80760	genome.wustl.edu	37	10	7618675	7618675	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030569.5	-1	validated	p.I573	0.009	127	0%	136	48.5%	-	-	-	-	-	NULL
TAF3	83860	genome.wustl.edu	37	10	8006111	8006111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031923.2	+1	provisional	p.R213Q	1.000	91	0%	61	42.6%	-	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
TAF3	83860	genome.wustl.edu	37	10	8006372	8006372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031923.2	+1	provisional	p.R300Q	1.000	129	0%	45	26.7%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
UPF2	26019	genome.wustl.edu	37	10	11997262	11997262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015542.2	-1	reviewed	p.R940Q	1.000	112	0%	39	46.2%	-	-	probably_damaging(0.957)	deleterious(0.02)	deleterious(0.784)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
UPF2	26019	genome.wustl.edu	37	10	12070848	12070848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015542.2	-1	reviewed	p.E347D	1.000	154	0%	82	12.2%	-	-	benign(0.34)	tolerated(1)	neutral(0.107)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
DHTKD1	55526	genome.wustl.edu	37	10	12126729	12126729	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018706.5	+1	validated	p.S167	0.002	199	0%	104	76%	-	-	-	-	-	superfamily_Thiamin diphosphate-binding fold (THDP-binding)
NUDT5	11164	genome.wustl.edu	37	10	12212721	12212721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014142.2	-1	validated	p.L182R	1.000	297	0%	159	47.8%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_NUDIX,superfamily_Nudix
CDC123	8872	genome.wustl.edu	37	10	12279149	12279149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006023.2	+1	validated	p.S191Y	1.000	136	0%	88	39.8%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_D123
CCDC3	83643	genome.wustl.edu	37	10	12940626	12940626	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031455.3	-1	validated	p.K201	1.000	103	0%	83	48.2%	-	-	-	-	-	NULL
UCMA	221044	genome.wustl.edu	37	10	13271633	13271633	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145314.1	-1	provisional	p.N99	1.000	610	0%	414	37.7%	-	-	-	-	-	NULL
UCMA	221044	genome.wustl.edu	37	10	13275754	13275754	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145314.1	-1	provisional	p.A35	0.000	119	0%	100	48%	-	-	-	-	-	NULL
SEPHS1	22929	genome.wustl.edu	37	10	13380771	13380771	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012247.3	-1	reviewed	p.H77	0.935	250	0%	118	39%	-	-	-	-	-	HMMPfam_AIRS,superfamily_PurM N-terminal domain-like
FRMD4A	55691	genome.wustl.edu	37	10	13699327	13699327	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018027.3	-1	validated	p.S754	1.000	51	0%	36	11.1%	-	-	-	-	-	NULL
HSPA14	51182	genome.wustl.edu	37	10	14893232	14893232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016299.2	+1	validated	p.A161D	0.999	220	0%	161	47.2%	-	-	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
HSPA14	51182	genome.wustl.edu	37	10	14909107	14909107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016299.2	+1	validated	p.R340Q	1.000	239	0%	131	45%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_Actin-like ATPase domain
DCLRE1C	64421	genome.wustl.edu	37	10	14950734	14950734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033855.1	-1	reviewed	p.E584D	0.929	329	0%	269	36.1%	-	-	benign(0.003)	tolerated(0.15)	neutral(0.241)	NULL
RPP38	10557	genome.wustl.edu	37	10	15146058	15146058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097590.1	+1	validated	p.G249C	0.007	112	0%	57	24.6%	-	-	possibly_damaging(0.719)	deleterious(0.03)	deleterious(0.625)	NULL
ITGA8	8516	genome.wustl.edu	37	10	15649744	15649744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003638.1	-1	provisional	p.R566C	0.132	265	0%	117	42.7%	-	-	possibly_damaging(0.493)	tolerated(0.18)	neutral(0.221)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGA8	8516	genome.wustl.edu	37	10	15688907	15688907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003638.1	-1	provisional	p.T382M	0.156	223	0%	147	39.5%	-	-	benign(0.153)	tolerated(0.11)	neutral(0.285)	HMMSmart_Int_alpha,superfamily_SSF69318
ITGA8	8516	genome.wustl.edu	37	10	15701035	15701035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003638.1	-1	provisional	p.T304M	1.000	194	0%	81	37%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMSmart_Int_alpha,superfamily_SSF69318
CUBN	8029	genome.wustl.edu	37	10	16918915	16918915	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.K3029	0.995	76	0%	68	33.8%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16967392	16967392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.P2165L	0.999	173	0%	74	56.8%	-	-	benign(0.204)	tolerated(1)	neutral(0.019)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16992015	16992015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.D1689Y	0.722	176	0%	118	50.8%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17127702	17127702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.F668L	0.000	138	0%	88	30.7%	-	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRDMT1	1787	genome.wustl.edu	37	10	17199651	17199651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004412.5	-1	reviewed	p.D226Y	0.997	567	0%	289	14.2%	-	-	possibly_damaging(0.44)	deleterious(0.02)	deleterious(0.526)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
STAM	8027	genome.wustl.edu	37	10	17726891	17726891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003473.2	+1	reviewed	p.D88Y	1.000	518	0%	301	33.2%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
MRC1	4360	genome.wustl.edu	37	10	17922544	17922544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009567.1	+1	reviewed	p.W909C	1.000	205	0%	140	27.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
SLC39A12	221074	genome.wustl.edu	37	10	18276496	18276496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425219	+1	known	p.R352K	1.000	224	0%	124	33.1%	-	-	-	-	-	NULL
CACNB2	783	genome.wustl.edu	37	10	18787376	18787376	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201596.2	+1	reviewed	p.F142	0.518	327	0%	196	42.3%	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CACNB2	783	genome.wustl.edu	37	10	18827118	18827118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201596.2	+1	reviewed	p.D438N	1.000	397	0%	183	28.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARL5B	221079	genome.wustl.edu	37	10	18962933	18962933	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178815.3	+1	validated	p.V120	0.881	199	0%	111	40.5%	-	-	-	-	-	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLLT10	8028	genome.wustl.edu	37	10	21823627	21823627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004641.2	+1	validated	p.M18I	1.000	134	0%	91	28.6%	-	-	benign(0.272)	deleterious(0.02)	neutral(0.412)	superfamily_FYVE_PHD_ZnF
SPAG6	9576	genome.wustl.edu	37	10	22699984	22699984	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012443.2	+1	reviewed	p.R447*	0.998	215	0%	121	42.1%	-	-	-	-	-	superfamily_ARM repeat
PIP4K2A	5305	genome.wustl.edu	37	10	22862314	22862314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005028.4	-1	reviewed	p.V189F	1.000	268	0%	153	34%	-	-	benign(0.361)	deleterious(0.05)	neutral(0.460)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
ARMC3	219681	genome.wustl.edu	37	10	23248041	23248041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173081.3	+1	validated	p.S112Y	0.082	208	0%	84	40.5%	-	-	probably_damaging(0.972)	tolerated(0.11)	deleterious(0.685)	HMMSmart_SM00185,superfamily_ARM repeat
ARMC3	219681	genome.wustl.edu	37	10	23297227	23297227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173081.3	+1	validated	p.D618Y	1.000	103	0%	52	28.8%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24508599	24508599	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.E39*	1.000	113	0%	75	12%	-	-	-	-	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24727405	24727405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.M281I	0.994	350	0%	219	20.1%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832448	24832448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.D1417N	0.856	229	0%	116	22.4%	-	-	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832967	24832967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.R1590C	1.000	208	0%	93	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24874446	24874446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.S1591L	0.899	189	0%	150	34%	-	-	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24886905	24886905	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.R1056*	1.000	553	0%	387	42.9%	-	-	-	-	-	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24910128	24910128	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.T232	0.416	331	0%	184	31.5%	-	-	-	-	-	NULL
ENKUR	219670	genome.wustl.edu	37	10	25279412	25279412	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145010.2	-1	provisional	p.E192*	1.000	370	0%	212	38.2%	-	-	-	-	-	NULL
THNSL1	79896	genome.wustl.edu	37	10	25312817	25312817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024838.4	+1	validated	p.R222I	1.000	341	0%	185	27%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
THNSL1	79896	genome.wustl.edu	37	10	25313930	25313930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024838.4	+1	validated	p.R593Q	0.170	116	0%	66	34.8%	-	-	benign(0)	tolerated(1)	-	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GPR158	57512	genome.wustl.edu	37	10	25861759	25861759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.D566N	1.000	405	0%	328	36.6%	-	-	benign(0.322)	tolerated(0.2)	neutral(0.150)	HMMPfam_7tm_3
GPR158	57512	genome.wustl.edu	37	10	25883238	25883238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.R637I	0.027	518	0%	285	41.8%	-	-	benign(0.367)	tolerated(0.13)	neutral(0.369)	HMMPfam_7tm_3
MYO3A	53904	genome.wustl.edu	37	10	26446416	26446416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.R991W	1.000	234	0%	113	44.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26463438	26463438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.K1415N	0.001	217	0%	102	35.3%	-	-	probably_damaging(0.989)	tolerated(0.12)	deleterious(0.700)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26465648	26465648	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.E1438*	1.000	157	0%	95	28.4%	-	-	-	-	-	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27301903	27301903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014915.2	-1	validated	p.L1621F	0.000	420	0%	203	36.9%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27323940	27323940	+	Nonsense_Mutation	SNP	G	G	A	rs151033255	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014915.2	-1	validated	p.R1147*	1.000	436	0%	282	37.6%	-	-	-	-	-	NULL
MASTL	84930	genome.wustl.edu	37	10	27459302	27459302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032844.3	+1	reviewed	p.E472K	0.000	64	0%	48	18.8%	-	-	benign(0.003)	tolerated(0.16)	neutral(0.059)	superfamily_Kinase_like
LOC100288039	100288039	genome.wustl.edu	37	10	27568121	27568121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342965.1	+1	model	p.K76N	0.555	374	0%	192	41.7%	-	-	-	-	-	NULL
PTCHD3	374308	genome.wustl.edu	37	10	27687450	27687450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.L693I	0.006	120	0%	74	29.7%	-	-	benign(0.004)	tolerated(0.45)	neutral(0.012)	HMMPfam_Patched
MKX	283078	genome.wustl.edu	37	10	28030313	28030313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173576.2	-1	validated	p.K103N	1.000	195	0%	105	48.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ARMC4	55130	genome.wustl.edu	37	10	28149593	28149593	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018076.2	-1	validated	p.A994	0.005	354	0%	219	39.3%	-	-	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
WAC	51322	genome.wustl.edu	37	10	28903534	28903534	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016628.3	+1	reviewed	p.Q492	0.992	81	0%	68	16.2%	-	-	-	-	-	NULL
WAC	51322	genome.wustl.edu	37	10	28906608	28906608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016628.3	+1	reviewed	p.A590V	1.000	87	0%	35	28.6%	-	-	possibly_damaging(0.789)	tolerated(0.45)	neutral(0.308)	NULL
SVIL	6840	genome.wustl.edu	37	10	29818733	29818733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021738.2	-1	reviewed	p.R716Q	0.970	253	0%	172	10.5%	-	-	benign(0.014)	tolerated(0.26)	neutral(0.035)	NULL
KIAA1462	57608	genome.wustl.edu	37	10	30317033	30317033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020848.2	-1	validated	p.P682S	1.000	520	0%	292	43.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTPAP	55149	genome.wustl.edu	37	10	30625854	30625854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018109.3	-1	validated	p.A220T	0.994	375	0%	206	32.5%	-	-	possibly_damaging(0.568)	tolerated(0.15)	neutral(0.435)	superfamily_Nucleotidyltransferase
MTPAP	55149	genome.wustl.edu	37	10	30629335	30629335	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018109.3	-1	validated	p.G125	0.032	181	0%	100	34%	-	-	-	-	-	NULL
LOC645954	645954	genome.wustl.edu	37	10	30987425	30987425	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017086.3	+1	model	NULL	1.000	243	0%	155	17.4%	-	-	-	-	-	-
ZNF438	220929	genome.wustl.edu	37	10	31138034	31138034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143766.1	-1	validated	p.R434C	1.000	77	0%	49	18.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZEB1	6935	genome.wustl.edu	37	10	31809281	31809281	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030751.5	+1	reviewed	p.Q340*	1.000	303	0%	177	40.1%	-	-	-	-	-	NULL
ZEB1	6935	genome.wustl.edu	37	10	31810426	31810426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030751.5	+1	reviewed	p.Y721*	0.603	209	0%	106	34.9%	-	-	-	-	-	NULL
ZEB1	6935	genome.wustl.edu	37	10	31815882	31815882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030751.5	+1	reviewed	p.S1022L	0.969	363	0.3%	196	46.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP12	94134	genome.wustl.edu	37	10	32103220	32103220	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018287.5	-1	provisional	p.E601*	1.000	934	0%	537	40%	-	-	-	-	-	NULL
KIF5B	3799	genome.wustl.edu	37	10	32320138	32320138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004521.2	-1	validated	p.D482N	1.000	524	0%	342	32.2%	-	-	possibly_damaging(0.439)	deleterious(0.01)	deleterious(0.548)	NULL
KIF5B	3799	genome.wustl.edu	37	10	32329364	32329364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004521.2	-1	validated	p.G79E	1.000	461	0%	284	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
CCDC7	221016	genome.wustl.edu	37	10	32832257	32832257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001026383.1	+1	validated	p.K341N	0.859	254	0%	57	36.8%	-	-	benign(0.261)	deleterious(0.01)	neutral(0.433)	NULL
CCDC7	221016	genome.wustl.edu	37	10	32833194	32833194	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001026383.1	+1	validated	p.E367*	0.000	147	0%	56	41.1%	-	-	-	-	-	NULL
NRP1	8829	genome.wustl.edu	37	10	33474632	33474632	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003873.5	-1	validated	p.I785	0.972	321	0%	217	32.3%	-	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
NRP1	8829	genome.wustl.edu	37	10	33515119	33515119	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003873.5	-1	validated	p.I360	0.027	315	0.3%	202	44.1%	-	-	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
PARD3	56288	genome.wustl.edu	37	10	34420423	34420423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.R1173C	1.000	572	0%	387	28.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PARD3	56288	genome.wustl.edu	37	10	34573160	34573160	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.R1030*	1.000	602	0%	266	36.8%	-	-	-	-	-	NULL
PARD3	56288	genome.wustl.edu	37	10	34636976	34636976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.R712Q	1.000	303	0%	131	31.3%	-	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
PARD3	56288	genome.wustl.edu	37	10	34739377	34739377	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	e5-1	1.000	174	0%	128	47.7%	-	-	-	-	-	-
CUL2	8453	genome.wustl.edu	37	10	35360156	35360156	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003591.2	-1	provisional	p.V30	0.020	356	0%	229	31%	-	-	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
CREM	1390	genome.wustl.edu	37	10	35467805	35467805	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000495960	+1	known	p.I42	1.000	110	0%	69	44.9%	-	-	-	-	-	NULL
NAMPTL	646309	genome.wustl.edu	37	10	36812967	36812967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440465	-1	known	p.D66Y	1.000	682	0%	479	38%	-	-	benign(0.007)	deleterious(0.03)	neutral(0.364)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37506768	37506768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.D1021Y	0.002	271	0%	94	25.5%	-	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
LOC646360	646360	genome.wustl.edu	37	10	37627438	37627438	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078419.1	+1	model	NULL	1.000	79	0%	61	41%	-	-	-	-	-	-
ZNF25	219749	genome.wustl.edu	37	10	38241845	38241845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145011.2	-1	provisional	p.R194I	1.000	331	0%	270	31.1%	-	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF25	219749	genome.wustl.edu	37	10	38242106	38242106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145011.2	-1	provisional	p.K107T	0.012	137	0%	86	45.3%	-	-	benign(0.079)	tolerated(0.58)	neutral(0.010)	superfamily_C2H2 and C2HC zinc fingers
LOC340947	340947	genome.wustl.edu	37	10	38369787	38369787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001131609.2	-1	model	p.E50K	0.059	100	0%	60	21.7%	-	-	-	-	-	HMMPfam_Paf67
ZNF37A	7587	genome.wustl.edu	37	10	38407287	38407287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007094.2	+1	validated	p.R403I	0.992	194	0%	125	37.6%	-	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF33B	7582	genome.wustl.edu	37	10	43127851	43127851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006955.1	-1	provisional	p.D16Y	0.990	325	0%	214	42.5%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
BMS1	9790	genome.wustl.edu	37	10	43318579	43318579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014753.3	+1	reviewed	p.S1049Y	1.000	128	0%	36	38.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF663
RASGEF1A	221002	genome.wustl.edu	37	10	43693520	43693520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145313.2	-1	validated	p.V386I	1.000	395	0%	254	48%	-	-	benign(0)	tolerated(1)	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
HNRNPF	3185	genome.wustl.edu	37	10	43882868	43882868	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098204.1	-1	reviewed	p.A155	0.998	273	0%	195	46.7%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RASSF4	83937	genome.wustl.edu	37	10	45479492	45479492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032023.3	+1	reviewed	p.G102R	0.000	93	0%	47	31.9%	-	-	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	NULL
ZNF22	7570	genome.wustl.edu	37	10	45499124	45499124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006963.4	+1	validated	p.R103Q	0.414	161	0%	105	50.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ALOX5	240	genome.wustl.edu	37	10	45924146	45924146	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000698.2	+1	reviewed	p.F305	1.000	228	0%	158	33.5%	-	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
GPRIN2	9721	genome.wustl.edu	37	10	46999403	46999403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014696.3	+1	validated	p.D175N	0.001	43	0%	41	31.7%	-	-	possibly_damaging(0.482)	tolerated(0.07)	deleterious(0.479)	NULL
RBP3	5949	genome.wustl.edu	37	10	48383977	48383977	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002900.2	-1	reviewed	p.I1085	0.486	280	0%	116	44.8%	-	-	-	-	-	HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase
RBP3	5949	genome.wustl.edu	37	10	48389546	48389546	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002900.2	-1	reviewed	p.F444	0.798	38	0%	29	48.3%	-	-	-	-	-	HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase
GDF2	2658	genome.wustl.edu	37	10	48416375	48416375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016204.1	-1	reviewed	p.N107D	1.000	83	0%	62	51.6%	-	-	possibly_damaging(0.445)	tolerated(0.14)	neutral(0.395)	HMMPfam_TGFb_propeptide
GDF2	2658	genome.wustl.edu	37	10	48416464	48416464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016204.1	-1	reviewed	p.S77L	0.793	98	0%	88	15.9%	-	-	benign(0.005)	tolerated(0.11)	neutral(0.272)	HMMPfam_TGFb_propeptide
FRMPD2	143162	genome.wustl.edu	37	10	49371459	49371459	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018071.3	-1	reviewed	p.E1265*	0.027	772	0%	548	21.2%	-	-	-	-	-	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49388938	49388938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018071.3	-1	reviewed	p.D900N	0.677	240	0%	99	24.2%	-	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49450285	49450285	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018071.3	-1	reviewed	p.E162	0.551	96	0%	76	23.7%	-	-	-	-	-	HMMSmart_SM00750
MAPK8	5599	genome.wustl.edu	37	10	49639235	49639235	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139047.1	+1	reviewed	e10-1	1.000	308	0%	124	31.5%	-	-	-	-	-	-
WDFY4	57705	genome.wustl.edu	37	10	49917924	49917924	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.R49	1.000	208	0%	121	34.7%	-	-	-	-	-	NULL
WDFY4	57705	genome.wustl.edu	37	10	49983783	49983783	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.S932*	0.000	515	0%	307	30.9%	-	-	-	-	-	NULL
WDFY4	57705	genome.wustl.edu	37	10	49998895	49998895	+	Missense_Mutation	SNP	T	T	A	rs78668594		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.V1397D	1.000	318	0%	205	28.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
WDFY4	57705	genome.wustl.edu	37	10	50085200	50085200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.R2375W	0.846	100	1%	78	42.3%	-	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
LRRC18	474354	genome.wustl.edu	37	10	50121533	50121533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006939.3	-1	validated	p.R223I	0.585	571	0%	318	45.9%	-	-	benign(0.173)	deleterious(0.02)	neutral(0.399)	NULL
LRRC18	474354	genome.wustl.edu	37	10	50121613	50121613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006939.3	-1	validated	p.E196D	0.000	583	0%	313	30%	-	-	benign(0.01)	tolerated(0.29)	neutral(0.030)	NULL
WDFY4	57705	genome.wustl.edu	37	10	50167796	50167796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.D2721Y	1.000	117	0%	84	14.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Beach,superfamily_BEACH domain
WDFY4	57705	genome.wustl.edu	37	10	50177207	50177207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.V2895M	0.157	287	0%	170	37.6%	-	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	superfamily_WD40 repeat-like
C10orf71	118461	genome.wustl.edu	37	10	50531155	50531155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135196.1	+1	validated	p.D189N	0.940	71	0%	50	40%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
C10orf71	118461	genome.wustl.edu	37	10	50532375	50532375	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135196.1	+1	validated	p.P595	0.000	129	0%	72	41.7%	-	-	-	-	-	NULL
DRGX	644168	genome.wustl.edu	37	10	50574212	50574212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080520.1	-1	provisional	p.Q252H	0.998	194	0.5%	116	23.3%	-	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50682124	50682124	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000124.2	-1	reviewed	p.K849N	0.997	272	0%	138	40.6%	-	-	benign(0.256)	deleterious(0.01)	neutral(0.432)	superfamily_SSF52540
ERCC6	2074	genome.wustl.edu	37	10	50740827	50740827	+	Missense_Mutation	SNP	C	C	T	rs186839348	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000124.2	-1	reviewed	p.A62T	0.000	197	0%	180	42.2%	-	-	benign(0.231)	tolerated(0.39)	neutral(0.039)	NULL
SLC18A3	6572	genome.wustl.edu	37	10	50819294	50819294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003055.2	+1	reviewed	p.A170T	1.000	53	0%	52	48.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC18A3	6572	genome.wustl.edu	37	10	50819455	50819455	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003055.2	+1	reviewed	p.F223	1.000	36	0%	37	43.2%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC18A3	6572	genome.wustl.edu	37	10	50819650	50819650	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003055.2	+1	reviewed	p.D288	1.000	31	0%	47	55.3%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
OGDHL	55753	genome.wustl.edu	37	10	50953962	50953962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018245.2	-1	validated	p.R453L	1.000	131	0%	106	34%	-	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_E1_dh,superfamily_SSF52518
OGDHL	55753	genome.wustl.edu	37	10	50957843	50957843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018245.2	-1	validated	p.A306T	1.000	55	0%	57	40.4%	-	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMPfam_E1_dh,superfamily_SSF52518
AGAP7	653268	genome.wustl.edu	37	10	51480509	51480509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077685.1	-1	provisional	p.S104N	0.275	317	0%	128	25.8%	-	-	possibly_damaging(0.484)	deleterious(0.01)	deleterious(0.566)	NULL
AGAP7	653268	genome.wustl.edu	37	10	51485557	51485557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416142	-1	known	p.R92K	0.013	46	0%	26	34.6%	-	-	-	-	-	NULL
AGAP6	414189	genome.wustl.edu	37	10	51761796	51761796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077665.2	+1	validated	p.S146L	1.000	480	0%	234	29.1%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
AGAP6	414189	genome.wustl.edu	37	10	51761844	51761844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077665.2	+1	validated	p.M162T	0.991	397	0%	217	38.2%	-	-	benign(0.281)	deleterious(0)	deleterious(0.530)	NULL
FAM21A	387680	genome.wustl.edu	37	10	51890818	51890818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005751.1	+1	validated	p.S1289Y	1.000	390	0.3%	202	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SGMS1	259230	genome.wustl.edu	37	10	52087080	52087080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147156.3	-1	reviewed	p.S209Y	1.000	172	0%	79	27.8%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
A1CF	29974	genome.wustl.edu	37	10	52595982	52595982	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138932.1	-1	reviewed	p.I152	0.987	249	0%	187	28.3%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
A1CF	29974	genome.wustl.edu	37	10	52601657	52601657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138932.1	-1	reviewed	p.K110N	0.998	492	0%	259	13.9%	-	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CSTF2T	23283	genome.wustl.edu	37	10	53458330	53458330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015235.2	-1	validated	p.R327Q	1.000	87	0%	53	30.2%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55582784	55582784	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.E1575*	0.980	130	0%	81	51.9%	-	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55583126	55583126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419320	-1	known	p.L1402F	1.000	360	0%	145	40%	-	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55839152	55839152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.D682G	1.000	470	0%	240	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55913041	55913041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.D540N	1.000	221	0%	126	35.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55945014	55945014	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.E445	1.000	371	0%	139	41%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TFAM	7019	genome.wustl.edu	37	10	60154787	60154787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003201.1	+1	provisional	p.R232C	0.995	291	0%	108	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HMG-box
BICC1	80114	genome.wustl.edu	37	10	60544779	60544779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080512.1	+1	reviewed	p.S109Y	1.000	198	0%	125	51.2%	-	-	probably_damaging(0.991)	tolerated(1)	neutral(0.444)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
SLC16A9	220963	genome.wustl.edu	37	10	61412569	61412569	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194298.2	-1	validated	p.A497	0.996	206	0%	105	44.8%	-	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61828930	61828930	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.T3903	0.969	700	0.1%	420	36.7%	-	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61829128	61829128	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.G3837	0.990	739	0%	429	42%	-	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61831711	61831711	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.P2976	0.024	145	0%	116	26.7%	-	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61833539	61833539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.R2367Q	1.000	250	0%	180	33.3%	-	-	benign(0.297)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61833637	61833637	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.I2334	1.000	193	0%	129	39.5%	-	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61994481	61994481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.L288F	1.000	411	0%	263	43.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
RHOBTB1	9886	genome.wustl.edu	37	10	62648103	62648103	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014836.4	-1	reviewed	p.E441	1.000	296	0%	207	41.5%	-	-	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
RHOBTB1	9886	genome.wustl.edu	37	10	62648581	62648581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014836.4	-1	reviewed	p.R282Q	1.000	380	0%	194	16.5%	-	-	possibly_damaging(0.86)	deleterious(0.02)	deleterious(0.716)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ARID5B	84159	genome.wustl.edu	37	10	63662137	63662137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.D81Y	1.000	125	0%	71	18.3%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ARID5B	84159	genome.wustl.edu	37	10	63829495	63829495	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.E380*	1.000	125	0%	93	32.3%	-	-	-	-	-	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
ARID5B	84159	genome.wustl.edu	37	10	63845621	63845621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.E454*	1.000	203	0%	59	50.8%	-	-	-	-	-	NULL
ARID5B	84159	genome.wustl.edu	37	10	63852488	63852488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.S1089L	0.989	56	0%	74	29.7%	-	-	possibly_damaging(0.69)	deleterious(0)	deleterious(0.692)	NULL
ZNF365	22891	genome.wustl.edu	37	10	64136452	64136452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199451.2	+1	reviewed	p.R167Q	0.981	107	0.9%	62	45.2%	-	-	benign(0.023)	deleterious(0.04)	neutral(0.350)	NULL
REEP3	221035	genome.wustl.edu	37	10	65326133	65326133	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001330.2	+1	validated	p.S23*	1.000	521	0%	235	33.6%	-	-	-	-	-	HMMPfam_TB2_DP1_HVA22
CTNNA3	29119	genome.wustl.edu	37	10	67680211	67680211	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127384.1	-1	validated	p.K855N	0.998	358	0%	178	34.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Vinculin
CTNNA3	29119	genome.wustl.edu	37	10	68535223	68535223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127384.1	-1	validated	p.K369N	1.000	393	0%	234	39.7%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Vinculin
MYPN	84665	genome.wustl.edu	37	10	69881406	69881406	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032578.2	+1	validated	p.E71*	1.000	68	0%	40	27.5%	-	-	-	-	-	NULL
HNRNPH3	3189	genome.wustl.edu	37	10	70101798	70101798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012207.2	+1	reviewed	p.R343H	1.000	546	0%	361	26.9%	-	-	unknown(0)	tolerated(0.11)	-	NULL
RUFY2	55680	genome.wustl.edu	37	10	70123758	70123758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017987.4	-1	validated	p.I515L	1.000	320	0%	219	31.5%	-	-	benign(0)	tolerated(0.92)	-	NULL
RUFY2	55680	genome.wustl.edu	37	10	70153874	70153874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017987.4	-1	validated	p.S216Y	1.000	186	0%	83	38.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DNA2	1763	genome.wustl.edu	37	10	70202712	70202712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080449.1	-1	provisional	p.K545N	0.744	329	0%	175	26.9%	-	-	benign(0.004)	tolerated(0.05)	neutral(0.345)	NULL
SLC25A16	8034	genome.wustl.edu	37	10	70243299	70243299	+	Nonsense_Mutation	SNP	G	G	A	rs139107749	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152707.2	-1	reviewed	p.R297*	0.999	240	0%	139	38.8%	-	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
TET1	80312	genome.wustl.edu	37	10	70332565	70332565	+	Missense_Mutation	SNP	C	C	T	rs185830524	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.S157L	0.048	107	0%	70	34.3%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
TET1	80312	genome.wustl.edu	37	10	70333934	70333934	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.K613	0.999	149	0%	63	36.5%	-	-	-	-	-	HMMPfam_zf-CXXC
TET1	80312	genome.wustl.edu	37	10	70405115	70405115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.L877I	0.987	137	0%	85	44.7%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
TET1	80312	genome.wustl.edu	37	10	70406306	70406306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.G1274W	0.002	186	0%	118	11%	-	-	benign(0.368)	deleterious(0)	deleterious(0.561)	NULL
TET1	80312	genome.wustl.edu	37	10	70446447	70446447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.S1796L	0.011	153	0%	72	31.9%	-	-	possibly_damaging(0.49)	deleterious(0.02)	deleterious(0.546)	NULL
CCAR1	55749	genome.wustl.edu	37	10	70502287	70502287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018237.2	+1	validated	p.T160M	1.000	598	0%	388	14.4%	-	-	unknown(0)	deleterious(0)	-	NULL
CCAR1	55749	genome.wustl.edu	37	10	70530990	70530990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018237.2	+1	validated	p.E776K	1.000	267	0%	165	42.4%	-	-	unknown(0)	deleterious(0)	-	NULL
ENSG00000247499	0	genome.wustl.edu	37	10	70545792	70545792	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501160	-1	known	NULL	0.000	109	0%	58	46.6%	-	-	-	-	-	-
KIAA1279	26128	genome.wustl.edu	37	10	70775964	70775964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015634.3	+1	reviewed	p.L553R	1.000	262	0%	172	33.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRGN	5552	genome.wustl.edu	37	10	70863772	70863772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002727.2	+1	reviewed	p.E125K	0.003	200	0%	146	43.8%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Serglycin
VPS26A	9559	genome.wustl.edu	37	10	70892786	70892786	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004896.3	+1	reviewed	p.E46*	1.000	329	0%	137	31.4%	-	-	-	-	-	HMMPfam_Vps26
HK1	3098	genome.wustl.edu	37	10	71124572	71124572	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033497.2	+1	reviewed	p.F141V	1.000	345	0%	239	33.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hexokinase_1,superfamily_SSF53067
HK1	3098	genome.wustl.edu	37	10	71139727	71139727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033497.2	+1	reviewed	p.R385C	1.000	169	0%	183	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hexokinase_2,superfamily_SSF53067
C10orf35	219738	genome.wustl.edu	37	10	71392759	71392759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145306.2	+1	validated	p.R104C	0.922	429	0.2%	274	38.7%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
COL13A1	1305	genome.wustl.edu	37	10	71681680	71681680	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130103.1	+1	reviewed	p.L367	0.982	172	0%	92	41.3%	-	-	-	-	-	HMMPfam_Collagen
AIFM2	84883	genome.wustl.edu	37	10	71874781	71874781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032797.4	-1	reviewed	p.V289M	0.001	78	0%	80	35%	-	-	possibly_damaging(0.539)	deleterious(0.03)	deleterious(0.547)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
AIFM2	84883	genome.wustl.edu	37	10	71880334	71880334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032797.4	-1	reviewed	p.V146M	0.896	325	0%	243	42.8%	-	-	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
NODAL	4838	genome.wustl.edu	37	10	72195223	72195223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018055.4	-1	reviewed	p.R237Q	0.666	101	0%	80	42.5%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	superfamily_SSF57501
SGPL1	8879	genome.wustl.edu	37	10	72614587	72614587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003901.3	+1	validated	p.E128D	0.994	414	0%	227	44.9%	-	-	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_PLP-dependent transferases
SGPL1	8879	genome.wustl.edu	37	10	72619247	72619247	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409118	+1	known	p.R116L	0.999	206	0%	112	32.1%	-	-	-	-	-	superfamily_PLP-dependent transferases
SLC29A3	55315	genome.wustl.edu	37	10	73122283	73122283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373189	+1	known	p.T449M	1.000	68	0%	79	49.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nucleoside_tran
CHST3	9469	genome.wustl.edu	37	10	73767336	73767336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004273.4	+1	reviewed	p.G183C	0.997	10	0%	21	23.8%	-	-	possibly_damaging(0.939)	tolerated(0.16)	neutral(0.444)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
ENSG00000226163	0	genome.wustl.edu	37	10	74262593	74262593	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431638	+1	known	NULL	0.056	48	0%	29	27.6%	-	-	-	-	-	-
OIT3	170392	genome.wustl.edu	37	10	74692257	74692257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152635.1	+1	provisional	p.P538L	1.000	58	1.7%	70	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75413202	75413202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114133.1	-1	validated	p.R156Q	1.000	75	0%	67	46.3%	-	-	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	NULL
AGAP5	729092	genome.wustl.edu	37	10	75435316	75435316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144000.1	-1	validated	p.D368N	1.000	282	0.4%	130	26.9%	-	-	possibly_damaging(0.912)	tolerated(0.16)	neutral(0.423)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SEC24C	9632	genome.wustl.edu	37	10	75510877	75510877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004922.2	+1	reviewed	p.A62T	1.000	138	0%	116	35.3%	-	-	benign(0.002)	tolerated(0.58)	neutral(0.005)	NULL
KIAA0913	23053	genome.wustl.edu	37	10	75548897	75548897	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015037.2	+1	validated	p.R136*	1.000	281	0%	250	12.8%	-	-	-	-	-	NULL
PLAU	5328	genome.wustl.edu	37	10	75674544	75674544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002658.3	+1	reviewed	p.K280N	1.000	114	0%	128	39.1%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
VCL	7414	genome.wustl.edu	37	10	75849096	75849096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014000.2	+1	reviewed	p.D389N	1.000	152	0%	94	37.2%	-	-	probably_damaging(0.997)	tolerated(0.21)	deleterious(0.510)	PatternScan_VINCULIN_2,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
VCL	7414	genome.wustl.edu	37	10	75849811	75849811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014000.2	+1	reviewed	p.E403K	1.000	216	0%	158	45.6%	-	-	probably_damaging(0.982)	tolerated(0.91)	neutral(0.426)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
KAT6B	23522	genome.wustl.edu	37	10	76735812	76735812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.R573C	1.000	256	0.4%	140	40%	-	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
KAT6B	23522	genome.wustl.edu	37	10	76735985	76735985	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.R630	1.000	85	0%	28	28.6%	-	-	-	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78713680	78713680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014797.2	-1	reviewed	p.H734R	1.000	227	0%	150	34%	-	-	benign(0.019)	tolerated(0.42)	neutral(0.015)	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78832990	78832990	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372403	-1	known	p.R489Q	0.206	176	0%	146	34.2%	-	-	-	-	-	HMMPfam_BK_channel_a,superfamily_NAD(P)-binding Rossmann-fold domains
DLG5	9231	genome.wustl.edu	37	10	79569450	79569450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004747.3	-1	reviewed	p.R1501H	0.943	297	0%	144	34.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PDZ,superfamily_PDZ domain-like
DLG5	9231	genome.wustl.edu	37	10	79580969	79580969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004747.3	-1	reviewed	p.K1091N	1.000	80	0%	61	16.4%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
DLG5	9231	genome.wustl.edu	37	10	79589197	79589197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004747.3	-1	reviewed	p.A701T	0.998	226	0%	176	38.1%	-	-	unknown(0)	tolerated(0.38)	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
DLG5	9231	genome.wustl.edu	37	10	79595529	79595529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004747.3	-1	reviewed	p.R530Q	1.000	110	0%	133	44.4%	-	-	unknown(0)	deleterious(0)	-	NULL
ZMIZ1	57178	genome.wustl.edu	37	10	81036951	81036951	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020338.3	+1	validated	p.S98	1.000	55	0%	46	50%	-	-	-	-	-	NULL
PPIF	10105	genome.wustl.edu	37	10	81111291	81111291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005729.3	+1	reviewed	p.G122R	1.000	74	0%	62	56.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
SFTPA2	729238	genome.wustl.edu	37	10	81317181	81317181	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098668.2	-1	reviewed	p.F177	0.259	325	0%	209	37.8%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
SFTPD	6441	genome.wustl.edu	37	10	81697613	81697613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003019.4	-1	validated	p.F375L	1.000	319	0%	212	28.8%	-	-	benign(0.264)	-	-	HMMPfam_Lectin_C,superfamily_C-type lectin-like
MAT1A	4143	genome.wustl.edu	37	10	82040061	82040061	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000429.2	-1	reviewed	p.F139	0.155	79	0%	53	34%	-	-	-	-	-	HMMPfam_S-AdoMet_synt_M,PatternScan_ADOMET_SYNTHETASE_1,superfamily_S-AdoMet_synt
DYDC1	143241	genome.wustl.edu	37	10	82098286	82098286	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138812.2	-1	provisional	p.S147	0.786	388	0%	218	22.9%	-	-	-	-	-	NULL
DYDC1	143241	genome.wustl.edu	37	10	82102039	82102039	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138812.2	-1	provisional	p.E110*	0.094	574	0%	242	26.4%	-	-	-	-	-	NULL
DYDC1	143241	genome.wustl.edu	37	10	82111690	82111690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138812.2	-1	provisional	p.E72D	0.864	378	0%	228	46.1%	-	-	benign(0.009)	tolerated(0.1)	neutral(0.287)	NULL
NRG3	10718	genome.wustl.edu	37	10	83926576	83926576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000404576	+1	known	p.K52Q	0.002	446	0%	234	35.9%	-	-	benign(0.139)	tolerated(0.05)	neutral(0.357)	NULL
NRG3	10718	genome.wustl.edu	37	10	84118578	84118578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010848.3	+1	reviewed	p.E303K	1.000	176	0%	116	19.8%	-	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
NRG3	10718	genome.wustl.edu	37	10	84118592	84118592	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010848.3	+1	reviewed	p.I307	0.898	156	0%	107	29.9%	-	-	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
NRG3	10718	genome.wustl.edu	37	10	84745302	84745302	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010848.3	+1	reviewed	p.R678*	1.000	108	0%	66	40.9%	-	-	-	-	-	NULL
CDHR1	92211	genome.wustl.edu	37	10	85962865	85962865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033100.2	+1	reviewed	p.E257K	1.000	253	0.4%	201	28.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Cadherin-like
LRIT1	26103	genome.wustl.edu	37	10	85993929	85993929	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015613.2	-1	validated	p.S265	0.698	62	0%	46	34.8%	-	-	-	-	-	superfamily_SSF48726,superfamily_SSF52058
FAM190B	54462	genome.wustl.edu	37	10	86131904	86131904	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018999.2	+1	validated	p.E366*	0.842	172	0%	125	18.4%	-	-	-	-	-	NULL
OPN4	94233	genome.wustl.edu	37	10	88416962	88416962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030015.2	+1	validated	p.R101C	0.004	342	0%	234	11.5%	-	-	benign(0.016)	tolerated(0.07)	neutral(0.320)	HMMPfam_7tm_1,superfamily_SSF81321
LDB3	11155	genome.wustl.edu	37	10	88459050	88459050	+	Silent	SNP	G	G	A	rs144445130	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080115.1	+1	reviewed	p.T304	1.000	137	0%	88	42%	-	-	-	-	-	NULL
AGAP11	119385	genome.wustl.edu	37	10	88768782	88768782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133447.1	+1	validated	p.N258S	1.000	166	0%	87	36.8%	-	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
AGAP11	119385	genome.wustl.edu	37	10	88769651	88769651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133447.1	+1	validated	p.E548K	1.000	208	0%	126	10.3%	-	-	-	-	-	HMMSmart_ANK
FAM35A	54537	genome.wustl.edu	37	10	88911896	88911896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019054.2	+1	validated	p.R262Q	0.088	213	0%	97	27.8%	-	-	benign(0)	tolerated(1)	-	NULL
FAM22D	728130	genome.wustl.edu	37	10	89125940	89125940	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451669	+1	known	p.E99K	0.000	277	0%	184	19%	-	-	-	-	-	NULL
PAPSS2	9060	genome.wustl.edu	37	10	89487091	89487091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015880.1	+1	reviewed	p.D311N	0.841	289	0%	140	40%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_ATP-sulfurylase,superfamily_PUA-like
ATAD1	84896	genome.wustl.edu	37	10	89516601	89516601	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032810.2	-1	provisional	p.R304*	0.999	377	0%	171	34.5%	-	-	-	-	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130Q	1.000	390	0%	194	41.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717695	89717695	+	Nonsense_Mutation	SNP	C	C	A	rs190070312	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.Y240*	1.000	272	0%	180	31.1%	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720749	89720749	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.I300	1.000	359	0%	132	26.5%	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
LIPJ	142910	genome.wustl.edu	37	10	90350986	90350986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394381	+1	known	p.Q3K	0.114	17	0.000	9	0.444	-	-	-	-	-	HMMPfam_Abhydro_lipase,superfamily_alpha/beta-Hydrolases
LIPF	8513	genome.wustl.edu	37	10	90427426	90427426	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004190.2	+1	reviewed	p.K69T	0.012	152	0%	99	31.3%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Abhydro_lipase,superfamily_alpha/beta-Hydrolases
IFIT3	3437	genome.wustl.edu	37	10	91099366	91099366	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031683.2	+1	validated	p.S318	0.000	91	0%	49	20.4%	-	-	-	-	-	superfamily_TPR-like
IFIT1B	439996	genome.wustl.edu	37	10	91143855	91143855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010987.2	+1	validated	p.R262Q	0.001	193	0%	83	42.2%	-	-	possibly_damaging(0.95)	tolerated(0.15)	deleterious(0.635)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
IFIT1	3434	genome.wustl.edu	37	10	91163048	91163048	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001548.3	+1	validated	p.F339C	0.998	88	0%	42	23.8%	-	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	superfamily_TPR-like
PANK1	53354	genome.wustl.edu	37	10	91348507	91348507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148977.1	-1	reviewed	p.N547H	1.000	177	0%	75	10.7%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
PANK1	53354	genome.wustl.edu	37	10	91359050	91359050	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148977.1	-1	reviewed	p.A423	0.457	431	0%	207	46.4%	-	-	-	-	-	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
PANK1	53354	genome.wustl.edu	37	10	91371471	91371471	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148977.1	-1	reviewed	p.F346	0.088	120	0%	62	40.3%	-	-	-	-	-	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
KIF20B	9585	genome.wustl.edu	37	10	91479254	91479254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.D505Y	0.000	113	0%	65	32.3%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
KIF20B	9585	genome.wustl.edu	37	10	91498252	91498252	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.L1178	0.966	135	0%	43	51.2%	-	-	-	-	-	NULL
KIF20B	9585	genome.wustl.edu	37	10	91520314	91520314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.R1531H	0.000	287	0%	153	37.3%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
ANKRD1	27063	genome.wustl.edu	37	10	92672640	92672640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014391.2	-1	reviewed	p.R315C	1.000	558	0%	312	37.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ANKRD1	27063	genome.wustl.edu	37	10	92675935	92675935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014391.2	-1	reviewed	p.R215Q	1.000	150	0%	94	40.4%	-	-	possibly_damaging(0.855)	tolerated(0.14)	deleterious(0.580)	HMMPfam_Ank,superfamily_ANK
CPEB3	22849	genome.wustl.edu	37	10	93904779	93904779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014912.4	-1	validated	p.R429H	1.000	238	0%	130	33.8%	-	-	benign(0.003)	tolerated(0.82)	neutral(0.001)	superfamily_RNA-binding domain RBD
CPEB3	22849	genome.wustl.edu	37	10	93999739	93999739	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014912.4	-1	validated	p.F123	1.000	102	0%	37	18.9%	-	-	-	-	-	NULL
IDE	3416	genome.wustl.edu	37	10	94268632	94268632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004969.3	-1	reviewed	p.V305L	1.000	290	0.3%	140	38.6%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd
KIF11	3832	genome.wustl.edu	37	10	94390097	94390097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004523.3	+1	reviewed	p.E490D	1.000	102	0%	66	24.2%	-	-	benign(0.017)	tolerated(0.44)	neutral(0.013)	NULL
KIF11	3832	genome.wustl.edu	37	10	94413534	94413534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004523.3	+1	reviewed	p.R1051Q	0.981	230	0%	96	30.2%	-	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
HHEX	3087	genome.wustl.edu	37	10	94452231	94452231	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002729.4	+1	reviewed	p.F156	1.000	88	0%	52	50%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
EXOC6	54536	genome.wustl.edu	37	10	94654733	94654733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019053.4	+1	reviewed	p.R123I	1.000	399	0%	251	40.2%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
EXOC6	54536	genome.wustl.edu	37	10	94818035	94818035	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019053.4	+1	reviewed	p.R780*	1.000	244	0%	116	44%	-	-	-	-	-	HMMPfam_Sec15
CYP26A1	1592	genome.wustl.edu	37	10	94836761	94836761	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000783.3	+1	reviewed	p.I398	1.000	139	0%	90	40%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
MYOF	26509	genome.wustl.edu	37	10	95085627	95085627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.E1743K	1.000	228	0%	136	48.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYOF	26509	genome.wustl.edu	37	10	95132775	95132775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.R790Q	0.997	464	0%	325	11.1%	-	-	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	HMMPfam_FerB
CEP55	55165	genome.wustl.edu	37	10	95276942	95276942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127182.1	+1	validated	p.E310D	1.000	271	0%	88	43.2%	-	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
PDE6C	5146	genome.wustl.edu	37	10	95372879	95372879	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006204.3	+1	reviewed	p.E133*	1.000	51	0%	33	39.4%	-	-	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
SLC35G1	159371	genome.wustl.edu	37	10	95658449	95658449	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134658.1	+1	validated	p.I100M	1.000	771	0%	477	33.8%	-	-	possibly_damaging(0.807)	tolerated(0.1)	deleterious(0.591)	HMMPfam_DUF6
PLCE1	51196	genome.wustl.edu	37	10	95790985	95790985	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.K61T	0.011	111	0%	76	43.4%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
PLCE1	51196	genome.wustl.edu	37	10	96043635	96043635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.K1628N	1.000	255	0%	146	30.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PLC-like phosphodiesterases
PLCE1	51196	genome.wustl.edu	37	10	96081764	96081764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.R2150Q	0.915	331	0.3%	209	33%	-	-	probably_damaging(0.979)	tolerated(0.16)	deleterious(0.481)	HMMPfam_RA,HMMSmart_SM00314
NOC3L	64318	genome.wustl.edu	37	10	96117053	96117053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022451.9	-1	provisional	p.R129H	0.000	317	0%	170	36.5%	-	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
HELLS	3070	genome.wustl.edu	37	10	96342766	96342766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018063.3	+1	reviewed	p.D426Y	1.000	489	0%	301	35.5%	-	-	possibly_damaging(0.661)	deleterious(0.03)	deleterious(0.598)	HMMPfam_SNF2_N
CYP2C18	1562	genome.wustl.edu	37	10	96495180	96495180	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000772.2	+1	reviewed	p.Q484	0.776	479	0%	330	33.9%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP2C19	1557	genome.wustl.edu	37	10	96540335	96540335	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000769.1	+1	reviewed	p.F187	0.998	634	0%	309	45%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2C19	1557	genome.wustl.edu	37	10	96540336	96540336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000769.1	+1	reviewed	p.D188N	0.996	622	0%	303	32.3%	-	-	benign(0.008)	deleterious(0.02)	neutral(0.383)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2C19	1557	genome.wustl.edu	37	10	96580252	96580252	+	Splice_Site	SNP	G	G	T	rs59705169		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000769.1	+1	reviewed	e6-1	0.991	356	0%	211	29.9%	-	-	-	-	-	-
C10orf129	142827	genome.wustl.edu	37	10	96979659	96979659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430183	+1	known	p.V181A	0.790	240	0%	167	40.1%	-	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	NULL
C10orf129	142827	genome.wustl.edu	37	10	96985103	96985103	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207321.2	+1	validated	p.I419	0.015	338	0%	206	32.5%	-	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PDLIM1	9124	genome.wustl.edu	37	10	97007027	97007027	+	Silent	SNP	C	C	T	rs141682059	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020992.2	-1	provisional	p.P210	0.000	300	0%	179	45.8%	-	-	-	-	-	NULL
SORBS1	10580	genome.wustl.edu	37	10	97144009	97144009	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034954.1	-1	validated	p.S465*	1.000	285	0%	213	36.6%	-	-	-	-	-	NULL
ENTPD1	953	genome.wustl.edu	37	10	97605310	97605310	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098175.1	+1	validated	p.W252*	1.000	161	0%	77	41.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF518A	9849	genome.wustl.edu	37	10	97917407	97917407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371192	+1	known	p.T443M	1.000	159	0%	96	32.3%	-	-	-	-	-	NULL
BLNK	29760	genome.wustl.edu	37	10	97951817	97951817	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013314.3	-1	reviewed	p.N428T	1.000	552	0%	350	43.7%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
DNTT	1791	genome.wustl.edu	37	10	98087354	98087354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004088.3	+1	reviewed	p.R335Q	1.000	285	0%	185	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00483,HMMPfam_NTP_transf_2,PatternScan_DNA_POLYMERASE_X,superfamily_Nucleotidyltransferase
TM9SF3	56889	genome.wustl.edu	37	10	98312772	98312772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020123.3	-1	validated	p.F235L	1.000	359	0%	197	40.6%	-	-	probably_damaging(0.999)	tolerated(0.52)	deleterious(0.499)	HMMPfam_EMP70
LCOR	84458	genome.wustl.edu	37	10	98715673	98715673	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032440.3	+1	validated	p.N432	0.964	64	0%	31	12.9%	-	-	-	-	-	NULL
C10orf12	26148	genome.wustl.edu	37	10	98743360	98743360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015652.2	+1	predicted	p.S738Y	0.146	137	0%	89	30.3%	-	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
ARHGAP19	84986	genome.wustl.edu	37	10	99006037	99006037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032900.4	-1	validated	p.A329T	0.922	249	0%	131	34.4%	-	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
CRTAC1	55118	genome.wustl.edu	37	10	99640049	99640049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000298819	-1	known	p.A578V	1.000	99	0%	83	37.3%	-	-	possibly_damaging(0.93)	-	-	NULL
PYROXD2	84795	genome.wustl.edu	37	10	100157253	100157253	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032709.2	-1	validated	p.V158	0.995	65	0%	44	34.1%	-	-	-	-	-	superfamily_SSF51905
HPSE2	60495	genome.wustl.edu	37	10	100249906	100249906	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021828.4	-1	reviewed	p.V456	0.996	200	0%	118	10.2%	-	-	-	-	-	NULL
CNNM1	26507	genome.wustl.edu	37	10	101090071	101090071	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020348.2	+1	validated	p.F309	1.000	18	0%	17	70.6%	-	-	-	-	-	HMMPfam_DUF21
ABCC2	1244	genome.wustl.edu	37	10	101560210	101560210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.L367V	1.000	548	0%	409	32.8%	-	-	benign(0.284)	deleterious(0.01)	deleterious(0.493)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC2	1244	genome.wustl.edu	37	10	101590525	101590525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.R934W	0.000	226	0%	72	48.6%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
ABCC2	1244	genome.wustl.edu	37	10	101594277	101594277	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.I1133M	1.000	536	0%	426	36.4%	-	-	benign(0.289)	tolerated(0.05)	neutral(0.434)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DNMBP	23268	genome.wustl.edu	37	10	101716409	101716409	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015221.2	-1	validated	p.A274	0.305	138	0%	103	35.9%	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CHUK	1147	genome.wustl.edu	37	10	101980391	101980391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001278.3	-1	reviewed	p.R143Q	1.000	252	0%	153	37.3%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PKD2L1	9033	genome.wustl.edu	37	10	102050242	102050242	+	Missense_Mutation	SNP	C	C	T	rs6584356	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016112.2	-1	reviewed	p.R681Q	0.023	202	0%	124	32.3%	-	-	benign(0.017)	tolerated(0.11)	neutral(0.272)	NULL
SCD	6319	genome.wustl.edu	37	10	102116382	102116382	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005063.4	+1	validated	p.F247	0.000	346	0%	244	15.2%	-	-	-	-	-	HMMPfam_FA_desaturase
NDUFB8	4714	genome.wustl.edu	37	10	102283617	102283617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005004.2	-1	validated	p.R180W	0.978	268	0%	160	39.4%	-	-	benign(0.037)	deleterious(0.01)	neutral(0.408)	HMMPfam_NDUF_B8
C10orf2	56652	genome.wustl.edu	37	10	102749087	102749087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021830.4	+1	reviewed	p.R374W	0.998	67	0%	46	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LZTS2	84445	genome.wustl.edu	37	10	102762412	102762412	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032429.1	+1	provisional	p.P39	0.744	21	0%	30	26.7%	-	-	-	-	-	NULL
TLX1NB	100038246	genome.wustl.edu	37	10	102849331	102849331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085398.1	-1	validated	p.R111K	0.000	192	0%	115	11.3%	-	-	-	-	-	NULL
TLX1	3195	genome.wustl.edu	37	10	102893931	102893931	+	Splice_Site	SNP	G	G	T	rs2742024	byCluster	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005521.3	+1	validated	e2-1	1.000	185	0%	115	35.7%	-	-	-	-	-	-
TLX1	3195	genome.wustl.edu	37	10	102894069	102894069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005521.3	+1	validated	p.K236E	1.000	110	0%	60	40%	-	-	possibly_damaging(0.559)	deleterious(0.05)	deleterious(0.536)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
BTRC	8945	genome.wustl.edu	37	10	103285923	103285923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033637.2	+1	reviewed	p.S237Y	1.000	381	0%	294	45.2%	-	-	benign(0.065)	deleterious(0.03)	neutral(0.369)	superfamily_F-box domain
POLL	27343	genome.wustl.edu	37	10	103342453	103342453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416979	-1	known	p.E144*	0.002	122	0%	131	39.7%	-	-	-	-	-	HMMSmart_SM00483
LDB1	8861	genome.wustl.edu	37	10	103867891	103867891	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113407.1	-1	validated	p.E399*	1.000	492	0%	288	30.2%	-	-	-	-	-	HMMPfam_LIM_bind
PPRC1	23082	genome.wustl.edu	37	10	103898675	103898675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015062.3	+1	reviewed	p.R177C	0.976	231	0%	165	37%	-	-	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
PPRC1	23082	genome.wustl.edu	37	10	103908158	103908158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015062.3	+1	reviewed	p.R1477Q	0.997	323	0.3%	261	49.4%	-	-	unknown(0)	tolerated(0.61)	-	NULL
PPRC1	23082	genome.wustl.edu	37	10	103908179	103908179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015062.3	+1	reviewed	p.S1484L	0.997	351	0%	291	26.1%	-	-	unknown(0)	tolerated(0.53)	-	NULL
NOLC1	9221	genome.wustl.edu	37	10	103919723	103919723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004741.3	+1	validated	p.K310N	1.000	285	0.4%	129	11.6%	-	-	unknown(0)	deleterious(0.03)	-	NULL
ELOVL3	83401	genome.wustl.edu	37	10	103988606	103988606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152310.1	+1	provisional	p.R137H	0.995	149	0%	131	19.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ELO
GBF1	8729	genome.wustl.edu	37	10	104129479	104129479	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004193.1	+1	provisional	p.F1053	1.000	341	0%	189	46%	-	-	-	-	-	NULL
NFKB2	4791	genome.wustl.edu	37	10	104156498	104156498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077494.1	+1	validated	p.R54Q	1.000	175	0%	127	29.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_REL_1,superfamily_p53-like transcription factors,HMMPfam_RHD
PSD	5662	genome.wustl.edu	37	10	104173805	104173805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002779.3	-1	provisional	p.S425L	0.999	171	0%	92	27.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PSD	5662	genome.wustl.edu	37	10	104174837	104174837	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002779.3	-1	provisional	p.E303*	1.000	87	0%	91	31.9%	-	-	-	-	-	NULL
TRIM8	81603	genome.wustl.edu	37	10	104414994	104414994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030912.2	+1	validated	p.R275H	1.000	39	0%	21	28.6%	-	-	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	NULL
CYP17A1	1586	genome.wustl.edu	37	10	104593880	104593880	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000102.3	-1	reviewed	e4-1	1.000	411	0%	273	45.8%	-	-	-	-	-	-
LOC100289608	100289608	genome.wustl.edu	37	10	104605676	104605676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343032.1	+1	model	p.S33N	0.922	187	0%	149	37.6%	-	-	-	-	-	NULL
NT5C2	22978	genome.wustl.edu	37	10	104852955	104852955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134373.1	-1	validated	p.R367Q	1.000	240	0%	132	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_5_nucleotid
INA	9118	genome.wustl.edu	37	10	105048340	105048340	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032727.3	+1	reviewed	p.E472*	1.000	157	0%	63	12.7%	-	-	-	-	-	NULL
TAF5	6877	genome.wustl.edu	37	10	105141577	105141577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006951.3	+1	reviewed	p.R505C	1.000	297	0%	188	22.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
PDCD11	22984	genome.wustl.edu	37	10	105184767	105184767	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014976.1	+1	validated	p.A930	0.000	216	0%	155	41.3%	-	-	-	-	-	NULL
CALHM1	255022	genome.wustl.edu	37	10	105218148	105218148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001412.3	-1	reviewed	p.D121N	1.000	15	0%	24	37.5%	-	-	probably_damaging(0.98)	tolerated(0.47)	neutral(0.435)	NULL
CALHM3	119395	genome.wustl.edu	37	10	105233323	105233323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129742.1	-1	validated	p.D228N	1.000	19	0%	21	33.3%	-	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	NULL
OBFC1	79991	genome.wustl.edu	37	10	105659861	105659861	+	Missense_Mutation	SNP	C	C	T	rs183917764	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024928.4	-1	validated	p.R139H	0.101	447	0%	268	35.4%	-	-	benign(0.142)	tolerated(0.11)	neutral(0.284)	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
SLK	9748	genome.wustl.edu	37	10	105780261	105780261	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.E1113*	1.000	158	0%	58	20.7%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
COL17A1	1308	genome.wustl.edu	37	10	105809869	105809869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000494.3	-1	reviewed	p.E714D	1.000	199	0%	112	38.4%	-	-	possibly_damaging(0.857)	tolerated(0.24)	neutral(0.368)	HMMPfam_Collagen
WDR96	80217	genome.wustl.edu	37	10	105893421	105893421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025145.5	-1	provisional	p.A1518V	1.000	494	0%	304	15.8%	-	-	possibly_damaging(0.856)	tolerated(0.66)	neutral(0.333)	NULL
WDR96	80217	genome.wustl.edu	37	10	105971850	105971850	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025145.5	-1	provisional	p.S217*	0.010	147	0%	123	42.3%	-	-	-	-	-	NULL
CCDC147	159686	genome.wustl.edu	37	10	106118174	106118174	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.E29*	0.997	103	0%	68	45.6%	-	-	-	-	-	NULL
CCDC147	159686	genome.wustl.edu	37	10	106125639	106125639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.E222G	1.000	257	0%	87	37.9%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106153099	106153099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.D514Y	1.000	130	0%	68	26.5%	-	-	benign(0.163)	deleterious(0)	neutral(0.459)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106159246	106159246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.K601N	1.000	187	0%	99	34.3%	-	-	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106160580	106160580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.R653I	1.000	284	0%	181	43.1%	-	-	possibly_damaging(0.546)	deleterious(0)	deleterious(0.630)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106207464	106207464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.E755D	1.000	51	0%	43	27.9%	-	-	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106209871	106209871	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.E807*	1.000	171	0.6%	74	27%	-	-	-	-	-	NULL
CCDC147	159686	genome.wustl.edu	37	10	106209949	106209949	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.E833*	1.000	140	0%	51	45.1%	-	-	-	-	-	NULL
SORCS3	22986	genome.wustl.edu	37	10	106907446	106907446	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014978.1	+1	reviewed	p.T458	0.014	528	0%	282	42.9%	-	-	-	-	-	HMMSmart_VPS10,superfamily_SSF110296
SORCS1	114815	genome.wustl.edu	37	10	108377996	108377996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.R944I	1.000	246	0%	191	35.1%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMSmart_PKD
SORCS1	114815	genome.wustl.edu	37	10	108432738	108432738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.F649S	1.000	113	0%	85	49.4%	-	-	possibly_damaging(0.623)	deleterious(0)	deleterious(0.661)	HMMSmart_VPS10,superfamily_SSF110296
XPNPEP1	7511	genome.wustl.edu	37	10	111637618	111637618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020383.3	-1	reviewed	p.A374T	1.000	236	0%	133	30.8%	-	-	benign(0.11)	tolerated(0.18)	neutral(0.065)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
SMC3	9126	genome.wustl.edu	37	10	112337617	112337617	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005445.3	+1	reviewed	p.R99*	1.000	338	0%	135	43%	-	-	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
RBM20	282996	genome.wustl.edu	37	10	112541291	112541291	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134363.1	+1	reviewed	p.V308	0.001	85	0%	64	35.9%	-	-	-	-	-	NULL
RBM20	282996	genome.wustl.edu	37	10	112572327	112572327	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134363.1	+1	reviewed	p.D724	0.063	113	0%	50	42%	-	-	-	-	-	NULL
RBM20	282996	genome.wustl.edu	37	10	112581648	112581648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134363.1	+1	reviewed	p.E1091K	0.806	140	0%	71	14.1%	-	-	possibly_damaging(0.608)	deleterious(0)	deleterious(0.655)	NULL
RBM20	282996	genome.wustl.edu	37	10	112583311	112583311	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134363.1	+1	reviewed	p.Q1130	0.968	166	0%	93	40.9%	-	-	-	-	-	NULL
SHOC2	8036	genome.wustl.edu	37	10	112724416	112724416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007373.3	+1	reviewed	p.E100D	1.000	129	0%	56	46.4%	-	-	benign(0.005)	tolerated(0.27)	neutral(0.034)	superfamily_L domain-like
GPAM	57678	genome.wustl.edu	37	10	113931986	113931986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020918.4	-1	validated	p.A250S	1.000	440	0%	185	15.7%	-	-	probably_damaging(0.998)	tolerated(0.67)	deleterious(0.477)	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
ZDHHC6	64429	genome.wustl.edu	37	10	114192019	114192019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022494.1	-1	provisional	p.L373I	1.000	379	0%	181	38.1%	-	-	benign(0.094)	tolerated(0.37)	neutral(0.026)	HMMPfam_SH3_2
ZDHHC6	64429	genome.wustl.edu	37	10	114192135	114192135	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022494.1	-1	provisional	p.R364*	1.000	567	0.4%	315	45.4%	-	-	-	-	-	HMMPfam_SH3_2
TCF7L2	6934	genome.wustl.edu	37	10	114901057	114901057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030756.4	+1	reviewed	p.D200N	1.000	508	0%	218	25.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CTNNB1_binding
TCF7L2	6934	genome.wustl.edu	37	10	114911553	114911553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030756.4	+1	reviewed	p.F334L	1.000	204	0%	98	32.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
NRAP	4892	genome.wustl.edu	37	10	115364457	115364457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198060.2	-1	validated	p.D1380N	0.960	203	0%	143	25.9%	-	-	probably_damaging(0.981)	tolerated(0.29)	neutral(0.455)	HMMPfam_Nebulin,HMMSmart_SM00227
NRAP	4892	genome.wustl.edu	37	10	115364676	115364676	+	Missense_Mutation	SNP	G	G	T	rs186178037	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198060.2	-1	validated	p.L1307I	1.000	133	0%	95	36.8%	-	-	possibly_damaging(0.533)	tolerated(0.07)	deleterious(0.499)	HMMPfam_Nebulin,HMMSmart_SM00227
NRAP	4892	genome.wustl.edu	37	10	115370318	115370318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198060.2	-1	validated	p.L1168S	0.798	226	0%	160	35%	-	-	possibly_damaging(0.925)	deleterious(0.03)	deleterious(0.738)	HMMSmart_SM00227
NRAP	4892	genome.wustl.edu	37	10	115381814	115381814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198060.2	-1	validated	p.K861N	1.000	289	0%	252	42.5%	-	-	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	HMMPfam_Nebulin,HMMSmart_SM00227
NRAP	4892	genome.wustl.edu	37	10	115385884	115385884	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198060.2	-1	validated	p.V722	0.002	210	0%	137	12.4%	-	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
CASP7	840	genome.wustl.edu	37	10	115480908	115480908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033338.4	+1	reviewed	p.K109N	1.000	284	0%	121	49.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
C10orf81	79949	genome.wustl.edu	37	10	115529652	115529652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369310	+1	known	p.Q176R	0.957	149	0%	113	12.4%	-	-	possibly_damaging(0.452)	tolerated(0.48)	neutral(0.159)	NULL
C10orf81	79949	genome.wustl.edu	37	10	115535551	115535551	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448805	+1	known	p.E50*	0.965	295	0.3%	160	38.8%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
C10orf81	79949	genome.wustl.edu	37	10	115540412	115540412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369312	+1	known	p.A325T	0.000	175	0%	83	45.8%	-	-	benign(0.005)	tolerated(0.69)	neutral(0.002)	NULL
DCLRE1A	9937	genome.wustl.edu	37	10	115610220	115610220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014881.3	-1	provisional	p.S215L	0.000	123	0%	70	20%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
NHLRC2	374354	genome.wustl.edu	37	10	115636688	115636688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198514.2	+1	provisional	p.R247I	1.000	80	0%	52	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NHL,superfamily_NHL repeat
C10orf118	55088	genome.wustl.edu	37	10	115891753	115891753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018017.2	-1	validated	p.V616I	1.000	245	0%	135	45.9%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
C10orf118	55088	genome.wustl.edu	37	10	115904348	115904348	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018017.2	-1	validated	p.E377*	1.000	640	0%	373	52%	-	-	-	-	-	NULL
C10orf118	55088	genome.wustl.edu	37	10	115922510	115922510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018017.2	-1	validated	p.T173M	0.914	228	0%	138	35.5%	-	-	possibly_damaging(0.87)	deleterious(0.01)	deleterious(0.744)	NULL
C10orf118	55088	genome.wustl.edu	37	10	115922792	115922792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018017.2	-1	validated	p.S79Y	0.627	276	0%	153	34%	-	-	possibly_damaging(0.852)	deleterious(0.02)	deleterious(0.711)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115947625	115947625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198795.1	+1	reviewed	p.R12I	1.000	209	0%	117	35%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115977383	115977383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198795.1	+1	reviewed	p.E764D	0.864	190	0%	115	36.5%	-	-	probably_damaging(0.984)	tolerated(0.09)	deleterious(0.727)	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
TDRD1	56165	genome.wustl.edu	37	10	115981148	115981148	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198795.1	+1	reviewed	p.E935*	0.994	267	0%	133	44.4%	-	-	-	-	-	NULL
ATRNL1	26033	genome.wustl.edu	37	10	116887383	116887383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207303.2	+1	validated	p.G173D	1.000	472	0%	292	41.8%	-	-	possibly_damaging(0.623)	tolerated(0.09)	deleterious(0.513)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ATRNL1	26033	genome.wustl.edu	37	10	117226686	117226686	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207303.2	+1	validated	p.S1140	0.982	394	0%	122	41.8%	-	-	-	-	-	NULL
GFRA1	2674	genome.wustl.edu	37	10	117884987	117884987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005264.4	-1	reviewed	p.S172L	0.996	66	0%	58	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDNF,superfamily_GDNF receptor-like (Pfam 02351)
PNLIPRP2	5408	genome.wustl.edu	37	10	118401732	118401732	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005396.4	+1	validated	p.I429	0.006	235	0%	130	10%	-	-	benign(0.007)	tolerated(0.84)	neutral(0.001)	NULL
C10orf82	143379	genome.wustl.edu	37	10	118425233	118425233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144661.2	-1	predicted	p.R54W	0.083	231	0%	178	30.3%	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
KCNK18	338567	genome.wustl.edu	37	10	118969237	118969237	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181840.1	+1	provisional	p.P194	0.000	215	0%	122	23%	-	-	-	-	-	NULL
KCNK18	338567	genome.wustl.edu	37	10	118969663	118969663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181840.1	+1	provisional	p.F336L	1.000	784	0%	470	31.5%	-	-	benign(0.214)	tolerated(0.6)	neutral(0.026)	HMMPfam_Ion_trans_2,superfamily_SSF81324
PDZD8	118987	genome.wustl.edu	37	10	119042793	119042793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173791.3	-1	provisional	p.S1151P	1.000	462	0%	234	23.5%	-	-	benign(0.008)	tolerated(0.29)	neutral(0.029)	NULL
PDZD8	118987	genome.wustl.edu	37	10	119043183	119043183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173791.3	-1	provisional	p.R1021C	1.000	251	0%	203	41.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDZD8	118987	genome.wustl.edu	37	10	119133879	119133879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173791.3	-1	provisional	p.N287S	0.996	178	0%	75	40%	-	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
RAB11FIP2	22841	genome.wustl.edu	37	10	119805436	119805436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014904.2	-1	validated	p.Y80C	1.000	296	0%	167	35.9%	-	-	benign(0.068)	tolerated(0.23)	neutral(0.046)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
FAM45A	404636	genome.wustl.edu	37	10	120879916	120879916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207009.2	+1	validated	p.R182I	1.000	218	0%	120	30%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM45A	404636	genome.wustl.edu	37	10	120892096	120892096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207009.2	+1	validated	p.E291A	1.000	267	0%	166	37.3%	-	-	benign(0.041)	tolerated(0.2)	neutral(0.052)	NULL
PRDX3	10935	genome.wustl.edu	37	10	120931929	120931929	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006793.2	-1	reviewed	p.Y172	0.892	236	0%	144	47.2%	-	-	-	-	-	HMMPfam_AhpC-TSA,superfamily_Thiordxn-like_fd
TIAL1	7073	genome.wustl.edu	37	10	121339477	121339477	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033925.1	-1	reviewed	p.G156	1.000	176	0%	75	26.7%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
BAG3	9531	genome.wustl.edu	37	10	121436429	121436429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004281.3	+1	reviewed	p.E455K	1.000	119	0%	91	25.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491
INPP5F	22876	genome.wustl.edu	37	10	121556408	121556408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014937.2	+1	reviewed	p.R284Q	1.000	199	0%	98	32.7%	-	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	HMMPfam_Syja_N
FGFR2	2263	genome.wustl.edu	37	10	123239530	123239530	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.Y770*	1.000	349	0%	210	41.9%	-	-	-	-	-	superfamily_Kinase_like
FGFR2	2263	genome.wustl.edu	37	10	123243222	123243223	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.T765fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Kinase_like
FGFR2	2263	genome.wustl.edu	37	10	123258036	123258036	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.N550H	1.000	453	0%	351	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FGFR2	2263	genome.wustl.edu	37	10	123279622	123279622	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.V270	0.032	213	0%	130	38.5%	-	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TACC2	10579	genome.wustl.edu	37	10	123846899	123846899	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206862.2	+1	reviewed	p.P1628	0.000	64	0%	44	20.5%	-	-	-	-	-	NULL
TACC2	10579	genome.wustl.edu	37	10	123892155	123892155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206862.2	+1	reviewed	p.A1869T	0.638	183	0%	144	15.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BTBD16	118663	genome.wustl.edu	37	10	124058612	124058612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144587.2	+1	validated	p.P252T	0.912	146	0%	105	25.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
BTBD16	118663	genome.wustl.edu	37	10	124089075	124089075	+	Missense_Mutation	SNP	G	G	T	rs986178	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144587.2	+1	validated	p.G331V	0.433	229	0.4%	202	33.2%	-	-	possibly_damaging(0.943)	deleterious(0.04)	deleterious(0.736)	NULL
BTBD16	118663	genome.wustl.edu	37	10	124094413	124094413	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144587.2	+1	validated	p.S394	0.000	286	0%	165	41.8%	-	-	-	-	-	NULL
C10orf120	399814	genome.wustl.edu	37	10	124459251	124459251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010912.1	-1	predicted	p.D19G	0.000	471	0%	229	26.2%	-	-	possibly_damaging(0.734)	tolerated(0.64)	neutral(0.272)	NULL
CUZD1	50624	genome.wustl.edu	37	10	124598705	124598705	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022034.4	-1	provisional	p.V92	0.727	206	0%	127	22.8%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
IKZF5	64376	genome.wustl.edu	37	10	124754153	124754153	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022466.5	-1	provisional	p.E135*	1.000	271	0%	175	26.3%	-	-	-	-	-	superfamily_SSF57667
BUB3	9184	genome.wustl.edu	37	10	124922193	124922193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004725.3	+1	reviewed	p.R274W	1.000	282	0%	177	31.6%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CPXM2	119587	genome.wustl.edu	37	10	125651050	125651050	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198148.2	-1	validated	p.S42	0.000	31	0%	30	36.7%	-	-	-	-	-	NULL
CHST15	51363	genome.wustl.edu	37	10	125805533	125805533	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015892.2	-1	validated	p.E66*	0.984	197	0%	142	42.3%	-	-	-	-	-	NULL
OAT	4942	genome.wustl.edu	37	10	126086638	126086638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000274.3	-1	reviewed	p.R398Q	1.000	142	0%	65	43.1%	-	-	possibly_damaging(0.765)	deleterious(0.04)	deleterious(0.633)	superfamily_PyrdxlP-dep_Trfase_major
OAT	4942	genome.wustl.edu	37	10	126097446	126097446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000274.3	-1	reviewed	p.K96N	1.000	306	0%	183	35%	-	-	benign(0.379)	deleterious(0.02)	deleterious(0.504)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
MMP21	118856	genome.wustl.edu	37	10	127455503	127455503	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147191.1	-1	reviewed	p.R480*	0.007	231	0%	141	36.2%	-	-	-	-	-	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
DHX32	55760	genome.wustl.edu	37	10	127526808	127526808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018180.2	-1	reviewed	p.Y677C	1.000	201	0%	117	14.5%	-	-	benign(0.012)	deleterious(0.02)	neutral(0.384)	HMMPfam_DUF1605
FAM196A	642938	genome.wustl.edu	37	10	128973618	128973618	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039762.2	-1	validated	p.R348*	1.000	149	0%	139	28.1%	-	-	-	-	-	NULL
FAM196A	642938	genome.wustl.edu	37	10	128974518	128974518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039762.2	-1	validated	p.R48W	1.000	302	0%	161	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOCK1	1793	genome.wustl.edu	37	10	129183161	129183161	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.F1350	0.991	196	0%	130	26.2%	-	-	-	-	-	NULL
PTPRE	5791	genome.wustl.edu	37	10	129868590	129868590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006504.4	+1	reviewed	p.A390V	1.000	86	0%	76	42.1%	-	-	possibly_damaging(0.823)	deleterious(0.03)	deleterious(0.676)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRE	5791	genome.wustl.edu	37	10	129870443	129870443	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006504.4	+1	reviewed	p.E477*	0.998	326	0%	156	16%	-	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
MKI67	4288	genome.wustl.edu	37	10	129899690	129899690	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.A3179	0.000	442	0.2%	291	27.1%	-	-	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129900879	129900879	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.E3075	0.001	659	0%	384	40.6%	-	-	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129905540	129905540	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.E1522*	0.114	834	0%	572	29.2%	-	-	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129906753	129906753	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.E1117	0.000	799	0%	476	42.4%	-	-	-	-	-	NULL
EBF3	253738	genome.wustl.edu	37	10	131638578	131638578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005463.1	-1	validated	p.A519T	1.000	94	0%	61	50.8%	-	-	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	NULL
GLRX3	10539	genome.wustl.edu	37	10	131973150	131973150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006541.3	+1	provisional	p.D282Y	1.000	712	0%	427	29.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd
DPYSL4	10570	genome.wustl.edu	37	10	134017338	134017338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006426.2	+1	validated	p.P512S	0.337	50	0%	46	30.4%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
LRRC27	80313	genome.wustl.edu	37	10	134175022	134175022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143757.1	+1	validated	p.P411L	0.004	204	0%	119	44.5%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
INPP5A	3632	genome.wustl.edu	37	10	134463950	134463950	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005539.3	+1	reviewed	p.E83*	1.000	294	0%	159	23.9%	-	-	-	-	-	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
TTC40	54777	genome.wustl.edu	37	10	134650406	134650406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368586	-1	known	p.L2151I	0.907	142	0%	81	34.6%	-	-	probably_damaging(0.972)	tolerated(0.27)	neutral(0.448)	NULL
KNDC1	85442	genome.wustl.edu	37	10	135025259	135025259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152643.6	+1	validated	p.N1378S	0.001	39	0%	54	31.5%	-	-	benign(0)	tolerated(0.9)	-	superfamily_Ras GEF
TUBGCP2	10844	genome.wustl.edu	37	10	135096710	135096710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006659.2	-1	validated	p.D721N	1.000	174	0%	130	10.8%	-	-	benign(0.378)	tolerated(0.4)	neutral(0.137)	HMMPfam_Spc97_Spc98
ZNF511	118472	genome.wustl.edu	37	10	135126329	135126329	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145806.2	+1	provisional	p.R240*	0.208	279	0%	129	25.6%	-	-	-	-	-	NULL
MTG1	92170	genome.wustl.edu	37	10	135233628	135233628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138384.2	+1	validated	p.D322N	0.028	88	0%	60	28.3%	-	-	probably_damaging(0.954)	tolerated(0.07)	deleterious(0.717)	NULL
CYP2E1	1571	genome.wustl.edu	37	10	135350581	135350581	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000773.3	+1	reviewed	p.E328*	1.000	151	0%	113	32.7%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
ATHL1	80162	genome.wustl.edu	37	11	290056	290056	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025092.4	+1	validated	p.F80	0.001	27	0%	18	38.9%	-	-	-	-	-	NULL
IFITM5	387733	genome.wustl.edu	37	11	298553	298553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025295.1	-1	provisional	p.K116T	1.000	44	0%	29	37.9%	-	-	possibly_damaging(0.489)	tolerated(0.07)	deleterious(0.482)	NULL
ANO9	338440	genome.wustl.edu	37	11	428359	428359	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012302.2	-1	validated	p.F407	0.010	77	1.3%	52	28.8%	-	-	-	-	-	NULL
CDHR5	53841	genome.wustl.edu	37	11	620351	620351	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021924.4	-1	reviewed	p.Y275	0.505	260	0%	169	32.5%	-	-	-	-	-	HMMSmart_SM00112,superfamily_Cadherin-like
CDHR5	53841	genome.wustl.edu	37	11	624604	624604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021924.4	-1	reviewed	p.R72W	0.000	70	0%	33	27.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112
DEAF1	10522	genome.wustl.edu	37	11	681025	681025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021008.2	-1	validated	p.T312I	0.004	564	0%	262	37%	-	-	benign(0.282)	tolerated(0.09)	neutral(0.383)	NULL
AP2A2	161	genome.wustl.edu	37	11	1010602	1010602	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012305.2	+1	validated	p.E933*	1.000	339	0%	147	29.9%	-	-	-	-	-	HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain
MUC6	4588	genome.wustl.edu	37	11	1027790	1027790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005961.2	-1	validated	p.E626K	0.925	31	0%	28	46.4%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_C8
MUC2	4583	genome.wustl.edu	37	11	1080295	1080295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002457.2	+1	reviewed	p.D339N	1.000	46	0%	30	30%	-	-	probably_damaging(0.998)	-	-	superfamily_Serine proterase inhibitors
MUC5B	727897	genome.wustl.edu	37	11	1255471	1255471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.N808T	0.031	29	0%	18	33.3%	-	-	probably_damaging(1)	-	-	HMMSmart_SM00214,superfamily_Serine proterase inhibitors
MUC5B	727897	genome.wustl.edu	37	11	1261039	1261039	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.P1201	0.000	43	0%	27	44.4%	-	-	-	-	-	superfamily_Serine proterase inhibitors
MUC5B	727897	genome.wustl.edu	37	11	1269170	1269170	+	Missense_Mutation	SNP	C	C	T	rs185960862	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.P3690L	0.000	292	0.3%	141	33.3%	-	-	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1273616	1273616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.F4972L	0.304	140	0%	100	41%	-	-	unknown(0)	-	-	NULL
TNNI2	7136	genome.wustl.edu	37	11	1862282	1862282	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003282.3	+1	reviewed	p.L100	1.000	19	0%	17	41.2%	-	-	-	-	-	HMMPfam_Troponin
TNNT3	7140	genome.wustl.edu	37	11	1955859	1955859	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006757.3	+1	reviewed	p.I188	0.969	87	0%	30	36.7%	-	-	-	-	-	HMMPfam_Troponin
INS	3630	genome.wustl.edu	37	11	2181039	2181039	+	Missense_Mutation	SNP	C	C	T	rs192030414	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421783	-1	known	p.R84Q	0.000	101	0%	66	34.8%	-	-	benign(0.003)	tolerated(0.31)	neutral(0.027)	HMMPfam_Insulin,HMMSmart_SM00078
TRPM5	29850	genome.wustl.edu	37	11	2439430	2439430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014555.3	-1	validated	p.F291L	0.999	77	0%	67	41.8%	-	-	possibly_damaging(0.818)	tolerated(0.53)	neutral(0.317)	NULL
KCNQ1DN	55539	genome.wustl.edu	37	11	2893079	2893079	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024627.1	+1	validated	NULL	0.000	226	0%	164	14.6%	-	-	-	-	-	-
NAP1L4	4676	genome.wustl.edu	37	11	2981138	2981138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005969.3	-1	reviewed	p.S203F	1.000	514	0%	221	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAP
CARS	833	genome.wustl.edu	37	11	3061101	3061101	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014437.1	-1	reviewed	p.V172	1.000	548	0%	281	31.7%	-	-	-	-	-	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
ZNF195	7748	genome.wustl.edu	37	11	3381282	3381282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130520.1	-1	validated	p.R319I	0.951	99	0%	56	35.7%	-	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	superfamily_C2H2 and C2HC zinc fingers
CHRNA10	57053	genome.wustl.edu	37	11	3687472	3687472	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020402.2	-1	provisional	p.F406	1.000	56	0%	39	30.8%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
NUP98	4928	genome.wustl.edu	37	11	3721961	3721961	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429801	-1	known	p.T160A	1.000	589	0%	335	40.3%	-	-	-	-	-	NULL
NUP98	4928	genome.wustl.edu	37	11	3774617	3774617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016320.4	-1	reviewed	p.G399E	1.000	225	0%	104	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OR52B4	143496	genome.wustl.edu	37	11	4388669	4388669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005161.3	-1	validated	p.P286Q	1.000	232	0%	147	38.8%	-	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_7tm_1,superfamily_SSF81321
OR52M1	119772	genome.wustl.edu	37	11	4567217	4567217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004137.1	+1	validated	p.R266Q	0.001	654	0.3%	503	33.2%	-	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_7tm_1,superfamily_SSF81321
OR52M1	119772	genome.wustl.edu	37	11	4567352	4567352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004137.1	+1	validated	p.R311M	0.027	320	0%	252	22.6%	-	-	benign(0.096)	deleterious(0.01)	neutral(0.413)	superfamily_SSF81321
OR52I2	143502	genome.wustl.edu	37	11	4608497	4608497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005170.2	+1	validated	p.R152H	0.998	247	0.8%	213	26.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
TRIM68	55128	genome.wustl.edu	37	11	4621686	4621686	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018073.5	-1	reviewed	p.F426	0.999	121	0%	74	36.5%	-	-	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
OR51D1	390038	genome.wustl.edu	37	11	4661208	4661208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004751.2	+1	validated	p.R63H	0.046	373	0%	246	32.9%	-	-	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_7tm_1,superfamily_SSF81321
OR51E1	143503	genome.wustl.edu	37	11	4674582	4674582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152430.3	+1	validated	p.V276I	0.000	304	0%	195	32.8%	-	-	benign(0.001)	tolerated(0.97)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51E2	81285	genome.wustl.edu	37	11	4703049	4703049	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030774.3	-1	validated	p.I298S	1.000	364	0%	171	32.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Family A G protein-coupled receptor-like
OR51F1	256892	genome.wustl.edu	37	11	4790392	4790392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004752.1	-1	provisional	p.F252L	0.237	198	0%	120	40%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_7tm_1,superfamily_SSF81321
OR51F2	119694	genome.wustl.edu	37	11	4842967	4842967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004753.1	+1	provisional	p.L118I	0.253	270	0%	187	38.5%	-	-	probably_damaging(0.974)	tolerated(1)	neutral(0.416)	HMMPfam_7tm_1,superfamily_SSF81321
OR51A7	119687	genome.wustl.edu	37	11	4928905	4928905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004749.1	+1	provisional	p.F102L	0.959	266	0%	135	37%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,superfamily_SSF81321
OR51A7	119687	genome.wustl.edu	37	11	4929107	4929107	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004749.1	+1	provisional	p.Q170*	0.751	319	0%	130	29.2%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR51G2	81282	genome.wustl.edu	37	11	4936635	4936635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005238.1	-1	provisional	p.L87M	0.719	249	0%	118	33.9%	-	-	possibly_damaging(0.911)	tolerated(0.15)	deleterious(0.604)	HMMPfam_7tm_1,superfamily_SSF81321
OR51G1	79324	genome.wustl.edu	37	11	4944666	4944666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005237.1	-1	provisional	p.R302C	0.902	513	0%	216	38.4%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	superfamily_SSF81321
OR52A5	390054	genome.wustl.edu	37	11	5153594	5153594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005160.2	-1	validated	p.E93D	0.687	156	0%	69	37.7%	-	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_7tm_1,superfamily_SSF81321
OR52A5	390054	genome.wustl.edu	37	11	5153714	5153714	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005160.2	-1	validated	p.Y53	0.001	147	0%	81	37%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR51V1	283111	genome.wustl.edu	37	11	5221875	5221875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004760.2	-1	validated	p.S19Y	0.029	210	0%	77	45.5%	-	-	unknown(0)	tolerated(0.54)	-	superfamily_Family A G protein-coupled receptor-like
HBD	3045	genome.wustl.edu	37	11	5255276	5255276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000519.3	-1	reviewed	p.S87Y	0.003	261	0%	152	50.7%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Globin,superfamily_Globin-like
HBE1	3046	genome.wustl.edu	37	11	5290874	5290874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005330.3	-1	reviewed	p.F42S	1.000	270	0%	143	36.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Globin,superfamily_Globin-like
OR51B4	79339	genome.wustl.edu	37	11	5322342	5322342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033179.2	-1	validated	p.L279I	0.782	179	0%	94	27.7%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51B5	282763	genome.wustl.edu	37	11	5363829	5363829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005567.1	-1	provisional	p.R309I	0.000	270	0%	88	42%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_Family A G protein-coupled receptor-like
OR51B5	282763	genome.wustl.edu	37	11	5363861	5363861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005567.1	-1	provisional	p.Q298H	0.003	295	0.3%	91	12.1%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_Family A G protein-coupled receptor-like
OR51B5	282763	genome.wustl.edu	37	11	5364668	5364668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005567.1	-1	provisional	p.F29L	0.001	170	0%	74	39.2%	-	-	benign(0.008)	tolerated(0.44)	neutral(0.013)	superfamily_Family A G protein-coupled receptor-like
OR51M1	390059	genome.wustl.edu	37	11	5411062	5411062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004756.2	+1	validated	p.S145L	0.008	309	0%	222	40.1%	-	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51Q1	390061	genome.wustl.edu	37	11	5443923	5443923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004757.2	+1	validated	p.L165F	1.000	410	0%	268	29.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_SSF81321
OR51I2	390064	genome.wustl.edu	37	11	5474815	5474815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004754.2	+1	validated	p.V33M	0.000	320	0%	216	41.2%	-	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	superfamily_SSF81321
OR52D1	390066	genome.wustl.edu	37	11	5510018	5510018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005163.2	+1	validated	p.F28I	0.000	302	0%	191	36.1%	-	-	benign(0)	tolerated(1)	-	superfamily_Family A G protein-coupled receptor-like
OR52B6	340980	genome.wustl.edu	37	11	5602474	5602474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005162.2	+1	validated	p.F123S	0.842	273	0%	216	32.4%	-	-	possibly_damaging(0.489)	deleterious(0)	deleterious(0.607)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM22	10346	genome.wustl.edu	37	11	5719604	5719604	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414897	+1	known	p.L104I	0.001	245	0%	131	36.6%	-	-	-	-	-	NULL
OR52N1	79473	genome.wustl.edu	37	11	5809916	5809916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001913.1	-1	provisional	p.N44S	0.890	149	0%	107	42.1%	-	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_SSF81321
OR52E8	390079	genome.wustl.edu	37	11	5877996	5877996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005168.1	-1	provisional	p.L313I	0.000	187	0%	90	36.7%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_SSF81321
OR52E8	390079	genome.wustl.edu	37	11	5878509	5878509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005168.1	-1	provisional	p.L142I	0.947	218	0.5%	121	33.1%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_7tm_1,superfamily_SSF81321
OR52E4	390081	genome.wustl.edu	37	11	5906253	5906253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005165.1	+1	provisional	p.S244Y	0.816	686	0%	360	40.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR52L1	338751	genome.wustl.edu	37	11	6008070	6008070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005173.2	-1	validated	p.L31I	0.992	145	0%	68	35.3%	-	-	benign(0.001)	tolerated(1)	-	superfamily_Family A G protein-coupled receptor-like
OR52L2P	79274	genome.wustl.edu	37	11	6079311	6079311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000316540	-1	known	p.F65L	0.019	208	0.5%	91	45.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR56B4	196335	genome.wustl.edu	37	11	6129347	6129347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005181.1	+1	provisional	p.F113L	0.000	293	0%	164	34.8%	-	-	benign(0.092)	tolerated(0.18)	neutral(0.063)	HMMPfam_7tm_1,superfamily_SSF81321
OR56B4	196335	genome.wustl.edu	37	11	6129368	6129368	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005181.1	+1	provisional	p.I120	0.406	266	0.4%	153	18.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
FAM160A2	84067	genome.wustl.edu	37	11	6244078	6244078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.G329E	1.000	124	0%	67	34.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RAI16-like
FAM160A2	84067	genome.wustl.edu	37	11	6245034	6245034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.E195K	0.999	77	0%	40	20%	-	-	possibly_damaging(0.912)	tolerated(0.07)	deleterious(0.682)	HMMPfam_RAI16-like
SMPD1	6609	genome.wustl.edu	37	11	6413365	6413365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000543.3	+1	reviewed	p.A357D	0.002	85	0%	57	35.1%	-	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
HPX	3263	genome.wustl.edu	37	11	6461910	6461910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000613.2	-1	reviewed	p.D45G	0.057	213	0%	113	38.9%	-	-	benign(0.003)	tolerated(0.22)	neutral(0.042)	NULL
DNHD1	144132	genome.wustl.edu	37	11	6579191	6579191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.L2889P	0.765	48	0%	37	40.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DCHS1	8642	genome.wustl.edu	37	11	6650909	6650909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.D1677N	1.000	83	0%	62	38.7%	-	-	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR2AG2	338755	genome.wustl.edu	37	11	6790024	6790024	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004490.1	-1	provisional	p.L55	0.987	438	0%	253	32%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6A2	8590	genome.wustl.edu	37	11	6816441	6816441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003696.2	-1	provisional	p.L167I	0.003	224	0%	108	25.9%	-	-	benign(0.013)	tolerated(0.11)	neutral(0.272)	HMMPfam_7tm_1,superfamily_SSF81321
OR6A2	8590	genome.wustl.edu	37	11	6816847	6816847	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003696.2	-1	provisional	p.L31	0.009	283	0%	163	38.7%	-	-	-	-	-	superfamily_SSF81321
OR10A5	144124	genome.wustl.edu	37	11	6867095	6867095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178168.1	+1	provisional	p.Y61C	1.000	445	0%	270	14.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR2D2	120776	genome.wustl.edu	37	11	6913696	6913696	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003700.1	-1	provisional	p.F12	0.046	218	0%	103	39.8%	-	-	-	-	-	superfamily_SSF81321
ZNF214	7761	genome.wustl.edu	37	11	7022502	7022502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013249.2	-1	validated	p.P138S	0.893	176	0%	89	32.6%	-	-	probably_damaging(0.985)	tolerated(0.57)	neutral(0.438)	NULL
ZNF214	7761	genome.wustl.edu	37	11	7022616	7022616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013249.2	-1	validated	p.R100C	0.001	176	0%	100	34%	-	-	possibly_damaging(0.456)	tolerated(0.18)	neutral(0.205)	NULL
NLRP14	338323	genome.wustl.edu	37	11	7065083	7065083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176822.3	+1	reviewed	p.I609T	0.004	298	0%	163	35.6%	-	-	possibly_damaging(0.572)	deleterious(0.01)	deleterious(0.602)	NULL
OLFML1	283298	genome.wustl.edu	37	11	7530908	7530908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198474.3	+1	validated	p.S233Y	0.021	135	0%	70	14.3%	-	-	benign(0.16)	tolerated(0.05)	neutral(0.360)	HMMPfam_OLF,HMMSmart_SM00284
PPFIBP2	8495	genome.wustl.edu	37	11	7614411	7614411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003621.2	+1	validated	p.R110C	1.000	351	0%	167	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPFIBP2	8495	genome.wustl.edu	37	11	7663537	7663537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003621.2	+1	validated	p.R509I	1.000	78	0%	37	32.4%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
OVCH2	341277	genome.wustl.edu	37	11	7716890	7716890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198185.2	-1	validated	p.S398Y	0.064	198	0%	88	31.8%	-	-	possibly_damaging(0.46)	deleterious(0.02)	deleterious(0.534)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
OR10A3	26496	genome.wustl.edu	37	11	7960477	7960477	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003745.1	-1	provisional	p.I197	0.990	226	0%	92	30.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10A3	26496	genome.wustl.edu	37	11	7960512	7960512	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003745.1	-1	provisional	p.E186*	0.002	187	0%	75	42.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NLRP10	338322	genome.wustl.edu	37	11	7981274	7981274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176821.3	-1	reviewed	p.D629Y	0.000	505	0%	226	44.2%	-	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	NULL
NLRP10	338322	genome.wustl.edu	37	11	7981808	7981808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176821.3	-1	reviewed	p.D451N	0.000	211	0.5%	121	33.1%	-	-	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
TRIM66	9866	genome.wustl.edu	37	11	8642798	8642798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014818.1	-1	validated	p.S933Y	0.003	87	0%	71	40.8%	-	-	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
ST5	6764	genome.wustl.edu	37	11	8718172	8718172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.R1032W	1.000	106	0%	73	17.8%	-	-	benign(0.33)	tolerated(0.09)	neutral(0.400)	HMMPfam_dDENN,HMMSmart_SM00801
ST5	6764	genome.wustl.edu	37	11	8724254	8724254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.R862Q	1.000	97	0%	64	34.4%	-	-	benign(0.315)	tolerated(0.37)	neutral(0.118)	HMMPfam_DENN,HMMSmart_SM00799
ST5	6764	genome.wustl.edu	37	11	8735572	8735572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.E654K	1.000	213	0%	153	17%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
ST5	6764	genome.wustl.edu	37	11	8747644	8747644	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.E485*	1.000	338	0%	194	29.4%	-	-	-	-	-	NULL
NRIP3	56675	genome.wustl.edu	37	11	9005629	9005629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020645.2	-1	validated	p.R202Q	1.000	296	0%	184	33.7%	-	-	benign(0.036)	deleterious(0.04)	neutral(0.351)	superfamily_Pept_Aspartic,HMMPfam_Asp_protease
DENND5A	23258	genome.wustl.edu	37	11	9168669	9168669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015213.2	-1	validated	p.R922H	1.000	306	0%	145	22.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RUN,HMMSmart_SM00593
DENND5A	23258	genome.wustl.edu	37	11	9225408	9225408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015213.2	-1	validated	p.E250K	1.000	144	0.7%	102	33.3%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DENN,HMMSmart_SM00799
IPO7	10527	genome.wustl.edu	37	11	9455267	9455267	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006391.2	+1	reviewed	e18-1	1.000	276	0%	169	37.9%	-	-	-	-	-	-
SBF2	81846	genome.wustl.edu	37	11	9985339	9985339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.K564T	1.000	241	0%	115	47%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MRVI1	10335	genome.wustl.edu	37	11	10626061	10626061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098579.1	-1	reviewed	p.R536K	1.000	639	0%	335	29.9%	-	-	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	HMMPfam_MRVI1
EIF4G2	1982	genome.wustl.edu	37	11	10821810	10821810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429377	-1	known	p.R722H	1.000	180	0%	154	44.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MA3,HMMSmart_MA3
ZBED5	58486	genome.wustl.edu	37	11	10875741	10875741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143667.1	-1	reviewed	p.R251Q	0.992	195	0%	136	38.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZBED5	58486	genome.wustl.edu	37	11	10876360	10876360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143667.1	-1	reviewed	p.L45I	1.000	121	0%	57	19.3%	-	-	benign(0.043)	-	-	NULL
GALNTL4	374378	genome.wustl.edu	37	11	11454326	11454326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198516.2	-1	validated	p.N146S	1.000	129	0%	96	45.8%	-	-	possibly_damaging(0.598)	tolerated(0.5)	neutral(0.217)	superfamily_Nucleotide-diphospho-sugar transferases
MICAL2	9645	genome.wustl.edu	37	11	12229646	12229646	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014632.2	+1	provisional	p.F183	0.994	492	0%	259	35.1%	-	-	-	-	-	superfamily_FAD/NAD(P)-binding domain
MICALCL	84953	genome.wustl.edu	37	11	12315873	12315873	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032867.2	+1	validated	p.E299*	0.000	88	0%	47	36.2%	-	-	-	-	-	NULL
PARVA	55742	genome.wustl.edu	37	11	12399273	12399273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018222.3	+1	provisional	p.D27Y	1.000	87	0%	39	41%	-	-	benign(0.386)	deleterious(0)	deleterious(0.568)	superfamily_Calponin-homology domain CH-domain
FAR1	84188	genome.wustl.edu	37	11	13716484	13716484	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032228.5	+1	validated	p.E58*	1.000	335	0%	140	30%	-	-	-	-	-	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd
SPON1	10418	genome.wustl.edu	37	11	14284426	14284426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310358	+1	known	p.R721Q	0.997	164	0%	89	40.4%	-	-	unknown(0)	-	-	NULL
COPB1	1315	genome.wustl.edu	37	11	14515239	14515239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144061.1	-1	reviewed	p.R147Q	1.000	275	0%	118	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
PDE3B	5140	genome.wustl.edu	37	11	14852292	14852292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000922.3	+1	validated	p.T619I	0.001	393	0%	114	28.9%	-	-	benign(0.065)	deleterious(0.01)	neutral(0.410)	NULL
PDE3B	5140	genome.wustl.edu	37	11	14853290	14853290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000922.3	+1	validated	p.K687N	0.305	197	1%	50	32%	-	-	possibly_damaging(0.762)	tolerated(0.29)	neutral(0.311)	superfamily_HD-domain/PDEase-like
PDE3B	5140	genome.wustl.edu	37	11	14865418	14865418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000922.3	+1	validated	p.S789L	0.999	591	0%	323	28.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE3B	5140	genome.wustl.edu	37	11	14880728	14880728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000922.3	+1	validated	p.I887S	1.000	455	0%	254	38.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
CYP2R1	120227	genome.wustl.edu	37	11	14899811	14899811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024514.4	-1	reviewed	p.R455W	0.997	294	0%	154	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
SOX6	55553	genome.wustl.edu	37	11	16010673	16010673	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033326.3	-1	reviewed	p.R592	0.386	162	0%	171	35.7%	-	-	-	-	-	superfamily_HMG-box
PIK3C2A	5286	genome.wustl.edu	37	11	17132001	17132001	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002645.2	-1	validated	p.C1174	0.999	467	0%	224	40.6%	-	-	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PIK3C2A	5286	genome.wustl.edu	37	11	17143822	17143822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002645.2	-1	validated	p.S857N	0.846	490	0%	287	38.3%	-	-	benign(0.001)	tolerated(0.58)	neutral(0.005)	superfamily_ARM repeat
KCNJ11	3767	genome.wustl.edu	37	11	17408795	17408795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000525.3	-1	reviewed	p.E282K	1.000	211	0%	127	39.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IRK,superfamily_Ig_E-set
SERGEF	26297	genome.wustl.edu	37	11	18017455	18017455	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012139.2	-1	validated	p.A170	0.230	218	0%	109	39.4%	-	-	-	-	-	superfamily_RCC1/BLIP-II
TPH1	7166	genome.wustl.edu	37	11	18050711	18050711	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004179.2	-1	reviewed	e5+1	1.000	195	0%	78	29.5%	-	-	-	-	-	-
TPH1	7166	genome.wustl.edu	37	11	18051104	18051104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004179.2	-1	reviewed	p.R142H	1.000	198	0%	89	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
TPH1	7166	genome.wustl.edu	37	11	18054916	18054916	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004179.2	-1	reviewed	p.E103*	1.000	135	0%	42	38.1%	-	-	-	-	-	superfamily_ACT-like
SAA3P	6290	genome.wustl.edu	37	11	18134705	18134705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000278207	-1	known	p.E73K	0.011	148	0%	74	24.3%	-	-	-	-	-	HMMPfam_SAA,HMMSmart_SM00197
MRGPRX3	117195	genome.wustl.edu	37	11	18159292	18159292	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054031.3	+1	reviewed	p.I181	0.000	831	0%	457	34.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HPS5	11234	genome.wustl.edu	37	11	18313170	18313170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181507.1	-1	reviewed	p.K753N	0.000	253	0%	191	34%	-	-	benign(0.017)	tolerated(0.17)	neutral(0.059)	NULL
LDHC	3948	genome.wustl.edu	37	11	18472540	18472540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002301.4	+1	reviewed	p.L289I	1.000	368	0%	171	35.7%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
LDHAL6A	160287	genome.wustl.edu	37	11	18487261	18487261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144071.1	+1	validated	p.D108Y	1.000	288	0%	188	31.4%	-	-	possibly_damaging(0.524)	deleterious(0)	deleterious(0.621)	HMMPfam_Ldh_1_N,superfamily_NAD(P)-bd
UEVLD	55293	genome.wustl.edu	37	11	18591900	18591900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040697.1	-1	validated	p.R73H	0.874	329	0%	138	37%	-	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_UEV,superfamily_UBC-like
SPTY2D1	144108	genome.wustl.edu	37	11	18636920	18636920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194285.2	-1	validated	p.R301C	0.009	144	0%	87	33.3%	-	-	probably_damaging(0.984)	tolerated(0.1)	deleterious(0.717)	NULL
MRGPRX2	117194	genome.wustl.edu	37	11	19077227	19077227	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054030.2	-1	provisional	p.I241	0.000	153	0%	76	25%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NAV2	89797	genome.wustl.edu	37	11	19735396	19735396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182964.5	+1	validated	p.Y52C	0.992	35	0%	30	36.7%	-	-	benign(0.189)	deleterious(0.01)	neutral(0.423)	superfamily_Calponin-homology domain CH-domain
LOC100289464	100289464	genome.wustl.edu	37	11	20136299	20136299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343052.1	-1	model	p.L78S	0.028	78	0%	65	12.3%	-	-	-	-	-	NULL
LOC645490	645490	genome.wustl.edu	37	11	20596606	20596606	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928515.4	+1	model	p.Q356H	0.986	51	0%	36	30.6%	-	-	-	-	-	NULL
SLC6A5	9152	genome.wustl.edu	37	11	20660082	20660082	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004211.3	+1	reviewed	p.L649	0.713	678	0%	348	35.1%	-	-	-	-	-	HMMPfam_SNF
SLC6A5	9152	genome.wustl.edu	37	11	20673873	20673873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004211.3	+1	reviewed	p.M703I	1.000	524	0.4%	316	36.7%	-	-	benign(0.012)	tolerated(0.48)	neutral(0.011)	HMMPfam_SNF
SLC6A5	9152	genome.wustl.edu	37	11	20676343	20676343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004211.3	+1	reviewed	p.D775N	1.000	135	0%	107	27.1%	-	-	possibly_damaging(0.546)	deleterious(0.02)	deleterious(0.569)	NULL
NELL1	4745	genome.wustl.edu	37	11	20869222	20869222	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006157.3	+1	reviewed	p.R143	0.916	390	0.3%	197	34%	-	-	-	-	-	HMMSmart_SM00282,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
NELL1	4745	genome.wustl.edu	37	11	20982022	20982022	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006157.3	+1	reviewed	p.E406*	1.000	584	0.2%	287	15%	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
ANO5	203859	genome.wustl.edu	37	11	22279291	22279291	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213599.2	+1	reviewed	p.V466	0.984	538	0%	250	36.4%	-	-	-	-	-	NULL
ANO5	203859	genome.wustl.edu	37	11	22294456	22294456	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213599.2	+1	reviewed	p.T719S	1.000	396	0%	247	38.1%	-	-	benign(0.039)	deleterious(0)	neutral(0.447)	HMMPfam_DUF590
SLC17A6	57084	genome.wustl.edu	37	11	22364816	22364816	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020346.2	+1	validated	p.P121	0.718	136	0%	70	48.6%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FANCF	2188	genome.wustl.edu	37	11	22646345	22646345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022725.3	-1	reviewed	p.D338N	0.991	277	0%	141	28.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LUZP2	338645	genome.wustl.edu	37	11	24998181	24998181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009909.2	+1	validated	p.K189N	1.000	217	0%	73	38.4%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
SLC5A12	159963	genome.wustl.edu	37	11	26714120	26714120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178498.3	-1	validated	p.A357T	1.000	146	0%	85	34.1%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SLC5A12	159963	genome.wustl.edu	37	11	26732902	26732902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178498.3	-1	validated	p.L137I	1.000	209	0%	87	34.5%	-	-	possibly_damaging(0.929)	tolerated(0.3)	neutral(0.405)	HMMPfam_SSF
KIF18A	81930	genome.wustl.edu	37	11	28045380	28045380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031217.3	-1	validated	p.S841L	0.000	266	0%	160	32.5%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
METTL15	196074	genome.wustl.edu	37	11	28352148	28352148	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113528.1	+1	validated	p.I328	0.408	310	0.3%	182	39%	-	-	-	-	-	HMMPfam_Methyltransf_5,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
MPPED2	744	genome.wustl.edu	37	11	30410458	30410458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145399.1	-1	reviewed	p.S271Y	0.002	641	0%	410	16.8%	-	-	benign(0.095)	-	-	NULL
DCDC5	100506627	genome.wustl.edu	37	11	30925140	30925140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343054.1	-1	model	p.D701Y	0.229	187	0%	101	40.6%	-	-	probably_damaging(0.962)	deleterious(0.04)	deleterious(0.754)	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
ENSG00000226746	0	genome.wustl.edu	37	11	30974070	30974070	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399333	-1	known	p.K498	1.000	599	0%	298	36.6%	-	-	-	-	-	NULL
DCDC1	341019	genome.wustl.edu	37	11	31327806	31327806	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181807.2	-1	validated	p.A188	1.000	304	0%	119	35.3%	-	-	-	-	-	superfamily_SSF89837
PAX6	5080	genome.wustl.edu	37	11	31816277	31816277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001604.4	-1	reviewed	p.E209K	1.000	207	0%	137	33.6%	-	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
WT1	7490	genome.wustl.edu	37	11	32417914	32417914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024426.3	-1	reviewed	p.R380W	0.967	179	0%	133	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WT1
CCDC73	493860	genome.wustl.edu	37	11	32635562	32635562	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008391.2	-1	validated	p.E768*	0.089	289	0%	153	34.6%	-	-	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32636276	32636276	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008391.2	-1	validated	p.E530*	0.011	341	0%	226	33.2%	-	-	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32676421	32676421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008391.2	-1	validated	p.K248T	1.000	511	0%	210	19%	-	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
CCDC73	493860	genome.wustl.edu	37	11	32720835	32720835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008391.2	-1	validated	p.E118*	1.000	818	0%	317	30.3%	-	-	-	-	-	NULL
QSER1	79832	genome.wustl.edu	37	11	32977590	32977590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076786.1	+1	provisional	p.F1429L	0.997	380	0%	172	37.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
QSER1	79832	genome.wustl.edu	37	11	32977664	32977664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076786.1	+1	provisional	p.I1454S	0.896	341	0%	170	40.6%	-	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
DEPDC7	91614	genome.wustl.edu	37	11	33047476	33047476	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077242.1	+1	validated	p.V115	1.000	272	0%	190	35.3%	-	-	-	-	-	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
DEPDC7	91614	genome.wustl.edu	37	11	33053022	33053022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077242.1	+1	validated	p.R294Q	0.893	278	0.7%	138	34.1%	-	-	benign(0.195)	tolerated(0.26)	neutral(0.053)	NULL
TCP11L1	55346	genome.wustl.edu	37	11	33078667	33078667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145541.1	+1	validated	p.K101N	1.000	342	0%	157	36.9%	-	-	-	-	-	HMMPfam_Tcp11
TCP11L1	55346	genome.wustl.edu	37	11	33080512	33080512	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145541.1	+1	validated	p.F216V	0.998	341	0%	169	44.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Tcp11
CSTF3	1479	genome.wustl.edu	37	11	33124687	33124687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001326.2	-1	reviewed	p.S210I	1.000	256	0%	90	30%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_TPR-like
CSTF3	1479	genome.wustl.edu	37	11	33124691	33124691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001326.2	-1	reviewed	p.R209W	1.000	252	0%	82	40.2%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_TPR-like
CSTF3	1479	genome.wustl.edu	37	11	33127192	33127192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001326.2	-1	reviewed	p.R169Q	1.000	298	0%	181	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00386,superfamily_TPR-like
HIPK3	10114	genome.wustl.edu	37	11	33358691	33358691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005734.3	+1	validated	p.R431I	1.000	274	0%	162	35.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FBXO3	26273	genome.wustl.edu	37	11	33768742	33768742	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012175.3	-1	reviewed	p.I391	0.973	281	0%	137	29.2%	-	-	-	-	-	superfamily_ApaG-like (Pfam 04379)
NAT10	55226	genome.wustl.edu	37	11	34129866	34129866	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024662.2	+1	validated	p.R32*	1.000	337	0%	146	32.2%	-	-	-	-	-	NULL
CAT	847	genome.wustl.edu	37	11	34474692	34474692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001752.3	+1	reviewed	p.P179L	0.961	297	0%	142	40.1%	-	-	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	superfamily_Catalase_N,HMMPfam_Catalase
PDHX	8050	genome.wustl.edu	37	11	35016488	35016488	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003477.2	+1	reviewed	p.I425	1.000	256	0%	143	32.2%	-	-	-	-	-	HMMPfam_2-oxoacid_dh,superfamily_SSF52777
SLC1A2	6506	genome.wustl.edu	37	11	35287082	35287082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004171.3	-1	reviewed	p.E549*	1.000	427	0%	336	33.9%	-	-	-	-	-	NULL
FJX1	24147	genome.wustl.edu	37	11	35641210	35641210	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014344.3	+1	reviewed	p.G342	0.986	25	0%	22	27.3%	-	-	-	-	-	NULL
RAG2	5897	genome.wustl.edu	37	11	36614849	36614849	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000536.3	-1	reviewed	p.I290	0.005	293	0%	165	18.2%	-	-	-	-	-	HMMPfam_RAG2
RAG2	5897	genome.wustl.edu	37	11	36615357	36615357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000536.3	-1	reviewed	p.T121N	1.000	412	0.2%	228	37.7%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_RAG2
LOC399881	399881	genome.wustl.edu	37	11	43284617	43284617	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040375.2	-1	model	NULL	1.000	90	0%	46	15.2%	-	-	-	-	-	-
ACCS	84680	genome.wustl.edu	37	11	44104734	44104734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127219.1	+1	validated	p.V376A	1.000	200	0%	110	35.5%	-	-	probably_damaging(0.992)	tolerated(0.12)	deleterious(0.708)	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
EXT2	2132	genome.wustl.edu	37	11	44129652	44129652	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000401.3	+1	reviewed	p.Y143	0.995	216	0%	124	33.9%	-	-	-	-	-	HMMPfam_Exostosin
ALX4	60529	genome.wustl.edu	37	11	44297051	44297051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021926.3	-1	reviewed	p.E208D	1.000	208	0%	113	36.3%	-	-	possibly_damaging(0.793)	tolerated(0.22)	neutral(0.340)	superfamily_Homeodomain_like
PRDM11	56981	genome.wustl.edu	37	11	45245972	45245972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020229.2	+1	validated	p.A350V	0.027	125	0%	63	31.7%	-	-	benign(0.15)	deleterious(0)	neutral(0.458)	NULL
DGKZ	8525	genome.wustl.edu	37	11	46393654	46393654	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105540.1	+1	reviewed	p.R475	0.997	28	0%	25	36%	-	-	-	-	-	NULL
DGKZ	8525	genome.wustl.edu	37	11	46398650	46398650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105540.1	+1	reviewed	p.A932T	1.000	127	0%	100	38%	-	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
ZNF408	79797	genome.wustl.edu	37	11	46727371	46727371	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024741.2	+1	validated	p.L707	0.003	83	0%	36	38.9%	-	-	-	-	-	NULL
CKAP5	9793	genome.wustl.edu	37	11	46772782	46772782	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.I1782	0.980	425	0%	257	40.1%	-	-	-	-	-	NULL
CKAP5	9793	genome.wustl.edu	37	11	46829637	46829637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.K308Q	1.000	625	0%	356	43.5%	-	-	benign(0.011)	tolerated(0.71)	neutral(0.002)	superfamily_ARM repeat
CKAP5	9793	genome.wustl.edu	37	11	46837802	46837802	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.N135	1.000	291	0.3%	178	36%	-	-	-	-	-	superfamily_ARM repeat
MADD	8567	genome.wustl.edu	37	11	47306581	47306581	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.S749	0.000	155	0%	106	13.2%	-	-	-	-	-	NULL
MADD	8567	genome.wustl.edu	37	11	47336866	47336866	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.I1455	1.000	337	0.3%	224	33%	-	-	-	-	-	NULL
MADD	8567	genome.wustl.edu	37	11	47348331	47348331	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.R1589*	1.000	407	0%	249	28.9%	-	-	-	-	-	NULL
PSMC3	5702	genome.wustl.edu	37	11	47446717	47446717	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002804.4	-1	reviewed	p.I80	1.000	498	0%	408	30.9%	-	-	-	-	-	NULL
CELF1	10658	genome.wustl.edu	37	11	47506004	47506004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025596.2	-1	reviewed	p.F128L	1.000	200	0%	107	39.3%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
KBTBD4	55709	genome.wustl.edu	37	11	47599403	47599403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018095.4	-1	validated	p.S66L	0.996	131	0%	81	42%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
OR4X2	119764	genome.wustl.edu	37	11	48266964	48266964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004727.1	+1	provisional	p.E103D	0.278	240	0%	152	36.8%	-	-	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC283116	283116	genome.wustl.edu	37	11	49055764	49055764	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_208043.4	+1	model	p.E192*	0.010	451	0.2%	200	30.5%	-	-	-	-	-	NULL
LOC646754	646754	genome.wustl.edu	37	11	49075371	49075371	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929704.3	-1	model	p.G416	0.001	922	0%	341	33.7%	-	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
OR4C13	283092	genome.wustl.edu	37	11	49974867	49974867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001955.2	+1	validated	p.K298R	0.520	189	0%	93	37.6%	-	-	benign(0.189)	tolerated(0.17)	neutral(0.076)	superfamily_SSF81321
OR4A5	81318	genome.wustl.edu	37	11	51411637	51411637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005272.3	-1	validated	p.F253L	0.279	95	0%	45	20%	-	-	possibly_damaging(0.523)	tolerated(0.12)	neutral(0.437)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4A15	81328	genome.wustl.edu	37	11	55136211	55136211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005275.1	+1	provisional	p.F284L	0.000	587	0%	357	32.8%	-	-	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000181950	0	genome.wustl.edu	37	11	55234577	55234577	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314689	+1	known	p.F16V	0.517	135	0%	61	21.3%	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000181950	0	genome.wustl.edu	37	11	55234965	55234965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314689	+1	known	p.S145L	1.000	124	0%	37	35.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C16	219428	genome.wustl.edu	37	11	55339956	55339956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004701.2	+1	validated	p.V118A	0.000	324	0%	199	31.2%	-	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR4C16	219428	genome.wustl.edu	37	11	55340398	55340398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004701.2	+1	validated	p.M265I	0.587	331	0%	160	34.4%	-	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4P4	81300	genome.wustl.edu	37	11	55406178	55406178	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004124.1	+1	provisional	p.G115	0.013	150	0%	65	27.7%	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR5D18	219438	genome.wustl.edu	37	11	55587573	55587573	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001952.1	+1	provisional	p.C156	0.011	386	0%	263	37.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5L2	26338	genome.wustl.edu	37	11	55594907	55594907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004739.1	+1	provisional	p.F71L	0.163	660	0.2%	402	28.1%	-	-	benign(0.006)	tolerated(0.96)	-	HMMPfam_7tm_1,superfamily_SSF81321
SPRYD5	84767	genome.wustl.edu	37	11	55655656	55655656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032681.3	+1	validated	p.M219T	0.002	352	0%	147	40.8%	-	-	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	NULL
SPRYD5	84767	genome.wustl.edu	37	11	55658887	55658887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032681.3	+1	validated	p.L380I	0.817	445	0%	177	20.9%	-	-	possibly_damaging(0.927)	tolerated(0.29)	neutral(0.404)	HMMPfam_SPRY
OR5W2	390148	genome.wustl.edu	37	11	55681169	55681169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001960.1	-1	provisional	p.V297A	1.000	122	0%	56	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703510	55703510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006637.1	-1	reviewed	p.D123Y	0.999	123	0%	47	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR8H3	390152	genome.wustl.edu	37	11	55890621	55890621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005201.1	+1	provisional	p.T258N	0.042	436	0%	184	35.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
OR8H3	390152	genome.wustl.edu	37	11	55890710	55890710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005201.1	+1	provisional	p.L288F	0.997	286	0%	145	44.8%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_7tm_1,superfamily_SSF81321
OR8K5	219453	genome.wustl.edu	37	11	55927347	55927347	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004058.2	-1	validated	p.Y149*	0.000	189	0%	85	38.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5T2	219464	genome.wustl.edu	37	11	56000147	56000147	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004746.1	-1	provisional	p.S172*	0.002	381	0%	215	26.5%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8K3	219473	genome.wustl.edu	37	11	56086249	56086249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005202.1	+1	provisional	p.S156Y	0.005	249	0%	128	40.6%	-	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
OR8J1	219477	genome.wustl.edu	37	11	56128214	56128214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005205.1	+1	provisional	p.F164L	0.000	518	0%	276	38.8%	-	-	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8J1	219477	genome.wustl.edu	37	11	56128665	56128665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005205.1	+1	provisional	p.T315A	0.000	104	0%	51	43.1%	-	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
OR8U1	219417	genome.wustl.edu	37	11	56143139	56143139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005204.1	+1	provisional	p.L14I	1.000	292	0%	164	37.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SSF81321
OR8U1	219417	genome.wustl.edu	37	11	56143730	56143730	+	Missense_Mutation	SNP	C	C	A	rs55860603		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005204.1	+1	provisional	p.L211I	0.000	468	0%	320	26.9%	-	-	benign(0.013)	tolerated(0.45)	neutral(0.013)	HMMPfam_7tm_1,superfamily_SSF81321
OR8U1	219417	genome.wustl.edu	37	11	56143894	56143894	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005204.1	+1	provisional	p.S265	0.000	184	0%	132	41.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000230416	0	genome.wustl.edu	37	11	56216525	56216525	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415874	+1	known	p.N126	0.101	74	0%	38	42.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M9	390162	genome.wustl.edu	37	11	56230006	56230006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004743.1	-1	provisional	p.R291I	0.118	127	0%	80	30%	-	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	superfamily_SSF81321
OR5M9	390162	genome.wustl.edu	37	11	56230312	56230312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004743.1	-1	provisional	p.R189I	0.001	160	0%	102	38.2%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
OR5M3	219482	genome.wustl.edu	37	11	56237137	56237137	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004742.1	-1	provisional	p.V279	0.470	115	0%	72	34.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M3	219482	genome.wustl.edu	37	11	56237958	56237958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004742.1	-1	provisional	p.D6N	0.065	106	0%	53	41.5%	-	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	superfamily_Family A G protein-coupled receptor-like
OR5M1	390168	genome.wustl.edu	37	11	56380609	56380609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004740.1	-1	provisional	p.V124L	0.795	455	0%	240	37.1%	-	-	possibly_damaging(0.748)	deleterious(0.03)	deleterious(0.639)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR9G1	390174	genome.wustl.edu	37	11	56468071	56468071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005213.1	+1	provisional	p.L70I	0.995	708	0%	423	19.6%	-	-	benign(0.013)	tolerated(0.48)	neutral(0.011)	HMMPfam_7tm_1,superfamily_SSF81321
OR9G1	390174	genome.wustl.edu	37	11	56468684	56468684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005213.1	+1	provisional	p.S274Y	0.492	592	0%	292	15.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AK2	390181	genome.wustl.edu	37	11	56756655	56756655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005323.1	+1	provisional	p.K89N	0.000	323	0%	186	41.9%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
LRRC55	219527	genome.wustl.edu	37	11	56949388	56949388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005210.2	+1	validated	p.F7L	0.001	49	0%	39	38.5%	-	-	benign(0.007)	-	-	NULL
TNKS1BP1	85456	genome.wustl.edu	37	11	57080392	57080392	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033396.2	-1	validated	p.Y590	0.000	85	0%	89	42.7%	-	-	-	-	-	NULL
P2RX3	5024	genome.wustl.edu	37	11	57118325	57118325	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002559.2	+1	reviewed	p.L265	0.000	145	0%	84	44%	-	-	-	-	-	HMMPfam_P2X_receptor
RTN4RL2	349667	genome.wustl.edu	37	11	57235208	57235208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178570.1	+1	provisional	p.S53F	0.924	266	0%	193	37.8%	-	-	possibly_damaging(0.609)	deleterious(0)	deleterious(0.655)	HMMSmart_LRRNT,superfamily_SSF52058
CTNND1	1500	genome.wustl.edu	37	11	57575670	57575670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085458.1	+1	validated	p.R666Q	1.000	304	0%	172	28.5%	-	-	probably_damaging(0.993)	tolerated(0.17)	deleterious(0.509)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ENSG00000196779	0	genome.wustl.edu	37	11	57876831	57876831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357944	-1	known	p.F101L	0.998	28	0%	19	31.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1S2	219958	genome.wustl.edu	37	11	57970967	57970967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004459.1	-1	validated	p.F229L	0.874	648	0%	307	31.9%	-	-	benign(0.14)	tolerated(0.3)	neutral(0.041)	HMMPfam_7tm_1,superfamily_SSF81321
OR5B3	441608	genome.wustl.edu	37	11	58170689	58170689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005469.1	-1	validated	p.S65F	0.416	232	0%	129	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR5B2	390190	genome.wustl.edu	37	11	58189874	58189874	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005566.2	-1	validated	p.V287	0.997	270	0%	157	35%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5B2	390190	genome.wustl.edu	37	11	58190099	58190099	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005566.2	-1	validated	p.I212	0.000	185	0%	117	37.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5B12	390191	genome.wustl.edu	37	11	58207029	58207029	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004733.2	-1	validated	p.F199C	0.016	213	0%	91	41.8%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_7tm_1,superfamily_SSF81321
LPXN	9404	genome.wustl.edu	37	11	58295053	58295053	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143995.1	-1	reviewed	p.G350	1.000	151	0%	77	40.3%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
GLYAT	10249	genome.wustl.edu	37	11	58477429	58477429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201648.2	-1	validated	p.L234S	0.421	133	0%	89	37.1%	-	-	benign(0.412)	deleterious(0)	deleterious(0.578)	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl-CoA N-acyltransferases (Nat)
GLYATL2	219970	genome.wustl.edu	37	11	58601914	58601914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145016.3	-1	validated	p.K291N	0.037	112	0%	80	48.7%	-	-	benign(0.198)	tolerated(0.2)	neutral(0.068)	NULL
GLYATL2	219970	genome.wustl.edu	37	11	58602042	58602042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145016.3	-1	validated	p.L249I	0.000	232	0%	136	34.6%	-	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl-CoA N-acyltransferases (Nat)
FAM111A	63901	genome.wustl.edu	37	11	58919674	58919674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142519.1	+1	validated	p.S178L	0.000	335	0.3%	135	34.8%	-	-	benign(0.025)	deleterious(0.01)	neutral(0.407)	NULL
OR5AN1	390195	genome.wustl.edu	37	11	59132013	59132013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004729.1	+1	provisional	p.L28F	0.977	335	0%	135	37.8%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_SSF81321
OR4D11	219986	genome.wustl.edu	37	11	59271355	59271355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004706.1	+1	provisional	p.L103I	0.791	452	0%	312	10.6%	-	-	benign(0.038)	tolerated(0.16)	neutral(0.061)	HMMPfam_7tm_1,superfamily_SSF81321
PATL1	219988	genome.wustl.edu	37	11	59415336	59415336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152716.2	-1	validated	p.R595I	1.000	322	0%	198	43.4%	-	-	possibly_damaging(0.773)	deleterious(0.02)	deleterious(0.670)	HMMPfam_PAT1
PATL1	219988	genome.wustl.edu	37	11	59420448	59420448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152716.2	-1	validated	p.R389W	1.000	196	0%	103	32%	-	-	possibly_damaging(0.902)	deleterious(0.03)	deleterious(0.722)	HMMPfam_PAT1
PATL1	219988	genome.wustl.edu	37	11	59425061	59425061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152716.2	-1	validated	p.R188I	1.000	305	0%	162	50%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_PAT1
STX3	6809	genome.wustl.edu	37	11	59559682	59559682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004177.4	+1	reviewed	p.E154K	1.000	146	0%	108	37%	-	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	superfamily_t-snare proteins
TCN1	6947	genome.wustl.edu	37	11	59622171	59622171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001062.3	-1	reviewed	p.L359F	0.984	320	0%	191	35.6%	-	-	benign(0.372)	deleterious(0.03)	deleterious(0.483)	NULL
MS4A6A	64231	genome.wustl.edu	37	11	59942913	59942913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152852.1	-1	reviewed	p.Y171H	0.000	286	0%	164	31.7%	-	-	benign(0.282)	tolerated(0.45)	neutral(0.098)	HMMPfam_CD20
MS4A4A	51338	genome.wustl.edu	37	11	60070085	60070085	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148975.1	+1	reviewed	p.G147	0.044	394	0.3%	262	36.3%	-	-	-	-	-	HMMPfam_CD20
MS4A14	84689	genome.wustl.edu	37	11	60167907	60167907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032597.3	+1	validated	p.D100Y	0.000	396	0.3%	200	32%	-	-	benign(0.429)	deleterious(0.02)	deleterious(0.522)	HMMPfam_CD20
MS4A14	84689	genome.wustl.edu	37	11	60183177	60183177	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032597.3	+1	validated	p.E246*	0.035	149	0%	92	39.1%	-	-	-	-	-	NULL
MS4A13	503497	genome.wustl.edu	37	11	60296927	60296927	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012417.2	+1	validated	p.S132	0.000	519	0%	294	16.3%	-	-	-	-	-	HMMPfam_CD20
ZP1	22917	genome.wustl.edu	37	11	60636620	60636620	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207341.2	+1	validated	p.E67*	1.000	174	0%	91	31.9%	-	-	-	-	-	NULL
CD6	923	genome.wustl.edu	37	11	60786760	60786760	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006725.3	+1	validated	p.N659	0.000	71	0%	73	34.2%	-	-	-	-	-	NULL
CD5	921	genome.wustl.edu	37	11	60885651	60885651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014207.3	+1	validated	p.F33L	0.011	245	0%	107	39.3%	-	-	benign(0)	tolerated(1)	-	superfamily_SRCR-like
VPS37C	55048	genome.wustl.edu	37	11	60901633	60901633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017966.4	-1	validated	p.R47Q	1.000	58	0%	63	34.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Mod_r
DDB1	1642	genome.wustl.edu	37	11	61070162	61070162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001923.3	-1	validated	p.E1002K	1.000	160	0%	119	28.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CPSF_A
DDB1	1642	genome.wustl.edu	37	11	61070621	61070621	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001923.3	-1	validated	p.R947*	1.000	372	0%	160	21.2%	-	-	-	-	-	HMMPfam_CPSF_A
CYBASC3	220002	genome.wustl.edu	37	11	61124092	61124092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153611.4	-1	validated	p.R32C	0.995	335	0%	157	39.5%	-	-	possibly_damaging(0.893)	deleterious(0.02)	deleterious(0.735)	HMMPfam_Cytochrom_B561
SDHAF2	54949	genome.wustl.edu	37	11	61205313	61205313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017841.1	+1	provisional	p.L85I	0.971	171	0%	111	38.7%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_DUF339,superfamily_DUF339
C11orf10	746	genome.wustl.edu	37	11	61557985	61557985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014206.3	-1	validated	p.F31L	1.000	211	0%	116	38.8%	-	-	possibly_damaging(0.636)	tolerated(0.77)	neutral(0.224)	HMMPfam_UPF0197
FADS2	9415	genome.wustl.edu	37	11	61630802	61630802	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004265.2	+1	reviewed	p.I343	0.996	112	0%	89	19.1%	-	-	-	-	-	HMMPfam_FA_desaturase
FTH1	2495	genome.wustl.edu	37	11	61732267	61732267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002032.2	-1	reviewed	p.P162S	1.000	262	0%	178	41.6%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	superfamily_Ferritin-like
AHNAK	79026	genome.wustl.edu	37	11	62286736	62286736	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.I5051	0.009	199	0%	130	18.5%	-	-	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62286994	62286994	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.I4965	0.003	190	0%	102	34.3%	-	-	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62288734	62288734	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.I4385	1.000	310	0%	162	29.6%	-	-	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62294167	62294167	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.I2574	0.971	576	0%	352	11.4%	-	-	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62298192	62298192	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.G1233*	0.997	720	0%	406	37.9%	-	-	-	-	-	NULL
EML3	256364	genome.wustl.edu	37	11	62371266	62371266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153265.2	-1	validated	p.H731R	1.000	502	0%	228	11.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GANAB	23193	genome.wustl.edu	37	11	62396373	62396373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198335.2	-1	validated	p.R705Q	1.000	123	0%	70	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31
GANAB	23193	genome.wustl.edu	37	11	62406547	62406547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198335.2	-1	validated	p.K96N	1.000	99	0%	89	14.6%	-	-	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
BSCL2	26580	genome.wustl.edu	37	11	62462159	62462159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122955.2	-1	reviewed	p.R171C	0.964	210	0%	105	35.2%	-	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_Seipin
GNG3	2785	genome.wustl.edu	37	11	62476260	62476260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012202.3	+1	validated	p.F70L	1.000	119	0%	71	38%	-	-	benign(0.007)	tolerated(0.78)	neutral(0.001)	HMMSmart_SM00224
NXF1	10482	genome.wustl.edu	37	11	62560123	62560123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006362.4	-1	reviewed	p.T604I	1.000	448	0%	280	36.8%	-	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like
STX5	6811	genome.wustl.edu	37	11	62598650	62598650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003164.3	-1	validated	p.K22N	1.000	31	0%	22	40.9%	-	-	possibly_damaging(0.722)	deleterious(0.03)	deleterious(0.627)	NULL
CHRM1	1128	genome.wustl.edu	37	11	62677285	62677285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000738.2	-1	reviewed	p.R430C	1.000	197	0%	90	36.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Family A G protein-coupled receptor-like
SLC22A6	9356	genome.wustl.edu	37	11	62751076	62751076	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004790.3	-1	reviewed	p.I187	0.340	195	0%	103	32%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A24	283238	genome.wustl.edu	37	11	62849108	62849108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136506.1	-1	validated	p.T439N	0.001	254	0%	109	12.8%	-	-	possibly_damaging(0.952)	tolerated(0.09)	deleterious(0.692)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A10	387775	genome.wustl.edu	37	11	63067097	63067097	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039752.3	+1	validated	p.L356	0.019	259	0%	141	41.8%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A9	114571	genome.wustl.edu	37	11	63137598	63137598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080866.2	+1	validated	p.L24I	0.002	284	0%	139	10.8%	-	-	benign(0.037)	tolerated(0.32)	neutral(0.026)	NULL
RTN3	10313	genome.wustl.edu	37	11	63472347	63472347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201429.1	+1	validated	p.S56F	1.000	810	0%	438	34.2%	-	-	unknown(0)	deleterious(0.02)	-	NULL
RCOR2	283248	genome.wustl.edu	37	11	63681556	63681556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173587.3	-1	validated	p.R254Q	0.985	123	0%	91	37.4%	-	-	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	NULL
FERMT3	83706	genome.wustl.edu	37	11	63990846	63990846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178443.2	+1	reviewed	p.R629Q	0.980	145	0%	84	47.6%	-	-	benign(0.384)	deleterious(0)	deleterious(0.567)	NULL
TRPT1	83707	genome.wustl.edu	37	11	63992424	63992424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033678.3	-1	validated	p.G59D	0.000	28	0%	15	33.3%	-	-	benign(0)	tolerated(0.99)	-	HMMPfam_PTS_2-RNA
VEGFB	7423	genome.wustl.edu	37	11	64003777	64003777	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003377.3	+1	provisional	p.E118*	1.000	188	0%	131	44.3%	-	-	-	-	-	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
PLCB3	5331	genome.wustl.edu	37	11	64030268	64030268	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000932.2	+1	reviewed	p.F781	0.864	57	0%	38	28.9%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NRXN2	9379	genome.wustl.edu	37	11	64402904	64402904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.G1142R	1.000	81	0%	54	18.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Concanavalin A-like lectins/glucanases
NRXN2	9379	genome.wustl.edu	37	11	64419008	64419008	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.I879	1.000	81	0%	59	40.7%	-	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
PYGM	5837	genome.wustl.edu	37	11	64514729	64514729	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005609.2	-1	reviewed	p.K760T	1.000	149	0%	115	29.6%	-	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Phosphorylase,superfamily_SSF53756
PYGM	5837	genome.wustl.edu	37	11	64520620	64520620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005609.2	-1	reviewed	p.Q481H	1.000	153	0%	83	32.5%	-	-	probably_damaging(0.994)	tolerated(0.51)	neutral(0.461)	HMMPfam_Phosphorylase,superfamily_SSF53756
MEN1	4221	genome.wustl.edu	37	11	64575556	64575556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000244.3	-1	reviewed	p.S159N	1.000	83	0%	58	37.9%	-	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	HMMPfam_Menin
MEN1	4221	genome.wustl.edu	37	11	64577295	64577295	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000244.3	-1	reviewed	p.Q96P	1.000	131	0%	75	40%	-	-	possibly_damaging(0.85)	tolerated(0.05)	deleterious(0.672)	HMMPfam_Menin
ATG2A	23130	genome.wustl.edu	37	11	64673064	64673064	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418259	-1	known	p.H947N	1.000	366	0%	205	34.1%	-	-	-	-	-	NULL
PPP2R5B	5526	genome.wustl.edu	37	11	64695547	64695547	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006244.3	+1	reviewed	p.E170*	1.000	723	0%	416	33.9%	-	-	-	-	-	HMMPfam_B56
C11orf85	283129	genome.wustl.edu	37	11	64722243	64722243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037225.1	-1	predicted	p.T45A	0.003	397	0%	227	37%	-	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
NAALADL1	10004	genome.wustl.edu	37	11	64821937	64821937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005468.2	-1	validated	p.D293Y	0.000	71	0%	81	33.3%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases
SCYL1	57410	genome.wustl.edu	37	11	65303605	65303605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020680.3	+1	reviewed	p.R523Q	1.000	145	0%	102	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
EHBP1L1	254102	genome.wustl.edu	37	11	65349944	65349944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099409.1	+1	validated	p.E601*	0.102	87	0%	27	14.8%	-	-	-	-	-	NULL
PCNXL3	399909	genome.wustl.edu	37	11	65396095	65396095	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032223.2	+1	validated	p.F1244	0.163	176	0%	113	43.4%	-	-	-	-	-	NULL
KAT5	10524	genome.wustl.edu	37	11	65484236	65484236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182710.1	+1	reviewed	p.E376D	1.000	273	0.4%	224	40.2%	-	-	benign(0.029)	tolerated(0.18)	neutral(0.058)	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
SNX32	254122	genome.wustl.edu	37	11	65618540	65618540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152760.2	+1	validated	p.F206L	1.000	152	0%	95	13.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Vps5
TSGA10IP	254187	genome.wustl.edu	37	11	65726763	65726763	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312452	+1	known	p.E37*	0.004	31	0%	31	32.3%	-	-	-	-	-	NULL
BANF1	8815	genome.wustl.edu	37	11	65771229	65771229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143985.1	+1	reviewed	p.D86N	0.997	172	0%	130	26.2%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_BAF,superfamily_Barrier-to-autointegration factor BAF
SF3B2	10992	genome.wustl.edu	37	11	65819969	65819969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006842.2	+1	reviewed	p.E38D	1.000	66	0%	53	43.4%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_SAP,HMMSmart_SM00513
SF3B2	10992	genome.wustl.edu	37	11	65830581	65830581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006842.2	+1	reviewed	p.E693D	1.000	437	0%	214	35.5%	-	-	benign(0)	tolerated(1)	-	NULL
PACS1	55690	genome.wustl.edu	37	11	65960978	65960978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018026.2	+1	reviewed	p.K126N	1.000	297	0%	152	38.2%	-	-	benign(0.399)	tolerated(0.39)	neutral(0.145)	NULL
PACS1	55690	genome.wustl.edu	37	11	65983676	65983676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018026.2	+1	reviewed	p.K249N	1.000	131	0%	83	16.9%	-	-	possibly_damaging(0.901)	tolerated(0.16)	neutral(0.416)	NULL
PACS1	55690	genome.wustl.edu	37	11	66001364	66001364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018026.2	+1	reviewed	p.K649N	1.000	93	0%	61	36.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pacs-1
TMEM151A	256472	genome.wustl.edu	37	11	66061904	66061904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153266.3	+1	validated	p.R63C	1.000	43	0%	56	39.3%	-	-	probably_damaging(0.953)	deleterious(0.02)	deleterious(0.780)	NULL
RIN1	9610	genome.wustl.edu	37	11	66101470	66101470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004292.2	-1	validated	p.R504H	0.011	18	0%	15	40%	-	-	benign(0.03)	tolerated(0.1)	neutral(0.288)	HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204)
DPP3	10072	genome.wustl.edu	37	11	66254023	66254023	+	Missense_Mutation	SNP	C	C	T	rs145463220	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005700.3	+1	reviewed	p.R125W	0.898	107	0%	62	33.9%	-	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	NULL
ACTN3	89	genome.wustl.edu	37	11	66323623	66323623	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104.1	+1	reviewed	p.V242	1.000	181	0%	118	31.4%	-	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
CCDC87	55231	genome.wustl.edu	37	11	66360052	66360052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018219.2	-1	validated	p.F145L	1.000	38	0%	35	48.6%	-	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
C11orf80	79703	genome.wustl.edu	37	11	66526554	66526554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024650.3	+1	validated	p.K170N	0.014	515	0%	256	31.2%	-	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
C11orf80	79703	genome.wustl.edu	37	11	66581411	66581411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024650.3	+1	validated	p.D372Y	0.959	326	0%	148	29.7%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
PC	5091	genome.wustl.edu	37	11	66638262	66638262	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000920.3	-1	reviewed	p.I245	0.992	60	0%	40	35%	-	-	-	-	-	HMMPfam_CPSase_L_D2,superfamily_SSF56059
SYT12	91683	genome.wustl.edu	37	11	66807539	66807539	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177963.3	+1	reviewed	p.Y162	1.000	80	1.3%	69	30.4%	-	-	-	-	-	superfamily_C2_CaLB
SYT12	91683	genome.wustl.edu	37	11	66811213	66811213	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177963.3	+1	reviewed	p.I242	0.293	157	0%	103	24.3%	-	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
KDM2A	22992	genome.wustl.edu	37	11	67021049	67021049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012308.2	+1	reviewed	p.R1020W	1.000	210	0.5%	102	30.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00367,superfamily_RNI-like
KDM2A	22992	genome.wustl.edu	37	11	67022438	67022438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012308.2	+1	reviewed	p.R1134Q	0.804	150	0.7%	120	31.7%	-	-	possibly_damaging(0.777)	tolerated(0.2)	neutral(0.339)	superfamily_RNI-like
CABP4	57010	genome.wustl.edu	37	11	67225864	67225864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145200.3	+1	reviewed	p.R225Q	0.000	134	0%	69	21.7%	-	-	benign(0.26)	tolerated(0.3)	neutral(0.056)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
PITPNM1	9600	genome.wustl.edu	37	11	67263745	67263745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004910.2	-1	validated	p.E741K	1.000	58	0%	37	37.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DDHD
PITPNM1	9600	genome.wustl.edu	37	11	67269482	67269482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004910.2	-1	validated	p.S164L	0.998	67	0%	46	32.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_IP_trans,superfamily_Bet v1-like
TBX10	347853	genome.wustl.edu	37	11	67400541	67400541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005995.3	-1	provisional	p.R195C	1.000	426	0%	208	42.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
ACY3	91703	genome.wustl.edu	37	11	67414477	67414477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080658.1	-1	validated	p.R13H	0.515	19	0%	21	38.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_AstE_AspA
UNC93B1	81622	genome.wustl.edu	37	11	67766710	67766710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000227471	-1	known	p.R207Q	0.883	90	0%	45	17.8%	-	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
CHKA	1119	genome.wustl.edu	37	11	67821495	67821495	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001277.2	-1	reviewed	p.F445C	1.000	188	0%	97	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
CHKA	1119	genome.wustl.edu	37	11	67838215	67838215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001277.2	-1	reviewed	p.K247T	1.000	347	0%	213	43.7%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
CHKA	1119	genome.wustl.edu	37	11	67848900	67848900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001277.2	-1	reviewed	p.E163K	1.000	394	0%	216	37%	-	-	benign(0.032)	tolerated(0.63)	neutral(0.005)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
CHKA	1119	genome.wustl.edu	37	11	67864498	67864498	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001277.2	-1	reviewed	p.A150	0.068	253	0%	118	26.3%	-	-	-	-	-	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
SUV420H1	51111	genome.wustl.edu	37	11	67926403	67926403	+	Silent	SNP	G	G	A	rs185204835	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017635.3	-1	reviewed	p.L470	0.901	362	0%	204	27.5%	-	-	-	-	-	NULL
SUV420H1	51111	genome.wustl.edu	37	11	67942647	67942647	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427752	-1	known	p.L150*	1.000	340	0%	208	40.4%	-	-	-	-	-	NULL
LRP5	4041	genome.wustl.edu	37	11	68181318	68181318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002335.2	+1	reviewed	p.V889M	1.000	64	0%	53	41.5%	-	-	possibly_damaging(0.529)	deleterious(0)	deleterious(0.623)	HMMPfam_Ldl_recept_b,superfamily_YWTD domain
LRP5	4041	genome.wustl.edu	37	11	68205996	68205996	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002335.2	+1	reviewed	p.F1398	0.969	189	0%	128	37.5%	-	-	-	-	-	NULL
PPP6R3	55291	genome.wustl.edu	37	11	68343450	68343450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018312.4	+1	validated	p.R444Q	1.000	417	0%	196	40.8%	-	-	benign(0.337)	tolerated(0.09)	neutral(0.402)	HMMPfam_SAPS
PPP6R3	55291	genome.wustl.edu	37	11	68382368	68382368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413788	+1	known	p.V174M	0.002	19	0%	14	28.6%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_SAPS
MRGPRD	116512	genome.wustl.edu	37	11	68747955	68747955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198923.2	-1	validated	p.F167L	0.000	130	0%	63	22.2%	-	-	benign(0.004)	tolerated(0.3)	neutral(0.029)	HMMPfam_7tm_1,superfamily_SSF81321
MRGPRD	116512	genome.wustl.edu	37	11	68748292	68748292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198923.2	-1	validated	p.R55Q	0.003	72	0%	55	32.7%	-	-	benign(0.295)	tolerated(0.3)	neutral(0.120)	HMMPfam_7tm_1,superfamily_SSF81321
TPCN2	219931	genome.wustl.edu	37	11	68831408	68831408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450354	+1	known	p.R27W	0.824	200	0%	118	38.1%	-	-	-	-	-	NULL
CTTN	2017	genome.wustl.edu	37	11	70260674	70260674	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415461	+1	known	p.R88Q	0.012	295	0%	140	37.1%	-	-	-	-	-	HMMPfam_HS1_rep
SHANK2	22941	genome.wustl.edu	37	11	70644609	70644609	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338508	-1	known	p.I573	0.971	111	0%	65	36.9%	-	-	-	-	-	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2
SHANK2	22941	genome.wustl.edu	37	11	70653124	70653124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338508	-1	known	p.R550H	0.953	79	0%	52	38.5%	-	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2
DHCR7	1717	genome.wustl.edu	37	11	71148915	71148915	+	Silent	SNP	G	G	A	rs80338858	byCluster	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001360.2	-1	reviewed	p.F302	0.979	90	0%	66	18.2%	-	-	-	-	-	HMMPfam_ERG4_ERG24
KRTAP5-9	3846	genome.wustl.edu	37	11	71260065	71260065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005553.3	+1	validated	p.R121H	0.039	319	0%	298	37.6%	-	-	unknown(0)	tolerated(0.54)	-	PatternScan_VWFC_1
IL18BP	10068	genome.wustl.edu	37	11	71711534	71711534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039659.1	+1	reviewed	p.P56S	0.001	206	0%	97	44.3%	-	-	benign(0.011)	tolerated(0.19)	neutral(0.050)	NULL
NUMA1	4926	genome.wustl.edu	37	11	71725340	71725340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.R1070H	0.819	57	0%	51	15.7%	-	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
NUMA1	4926	genome.wustl.edu	37	11	71727177	71727177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.E458K	0.991	126	0%	95	28.4%	-	-	probably_damaging(0.973)	tolerated(0.06)	deleterious(0.738)	superfamily_Prefoldin
NUMA1	4926	genome.wustl.edu	37	11	71729250	71729250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.E319D	1.000	457	0%	193	13%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
FOLR2	2350	genome.wustl.edu	37	11	71932640	71932640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000803.4	+1	reviewed	p.G201D	1.000	155	0%	102	39.2%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Folate_rec
INPPL1	3636	genome.wustl.edu	37	11	71939285	71939285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001567.3	+1	reviewed	p.F78L	1.000	219	0%	115	44.3%	-	-	benign(0.026)	tolerated(0.74)	neutral(0.003)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
PDE2A	5138	genome.wustl.edu	37	11	72292418	72292418	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002599.3	-1	validated	p.E676	1.000	187	0%	114	17.5%	-	-	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
ARAP1	116985	genome.wustl.edu	37	11	72399520	72399520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040118.2	-1	reviewed	p.K1350N	1.000	207	0%	111	15.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FCHSD2	9873	genome.wustl.edu	37	11	72560908	72560908	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014824.2	-1	validated	p.E445D	1.000	394	0%	213	29.1%	-	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	NULL
RELT	84957	genome.wustl.edu	37	11	73105540	73105540	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032871.3	+1	reviewed	p.P269	0.428	49	0%	41	41.5%	-	-	-	-	-	NULL
PLEKHB1	58473	genome.wustl.edu	37	11	73361731	73361731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021200.2	+1	validated	p.K76N	0.995	82	0%	56	26.8%	-	-	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
UCP2	7351	genome.wustl.edu	37	11	73686069	73686069	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003355.2	-1	reviewed	p.R305*	0.997	146	0%	117	28.2%	-	-	-	-	-	NULL
UCP2	7351	genome.wustl.edu	37	11	73689372	73689372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003355.2	-1	reviewed	p.L18I	1.000	160	0%	106	36.8%	-	-	benign(0.008)	tolerated(0.42)	neutral(0.014)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
C2CD3	26005	genome.wustl.edu	37	11	73789272	73789272	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015531.4	-1	validated	p.A1497	0.960	369	0%	255	31%	-	-	-	-	-	NULL
C2CD3	26005	genome.wustl.edu	37	11	73809191	73809191	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015531.4	-1	validated	p.R948*	1.000	185	0%	87	40.2%	-	-	-	-	-	NULL
P4HA3	283208	genome.wustl.edu	37	11	73996902	73996902	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182904.3	-1	reviewed	p.F354	0.991	370	0%	184	37.5%	-	-	-	-	-	HMMSmart_SM00702,superfamily_TPR-like
LOC100287896	100287896	genome.wustl.edu	37	11	74208734	74208734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343118.1	+1	model	p.D262Y	0.220	281	0%	139	40.3%	-	-	-	-	-	NULL
POLD3	10714	genome.wustl.edu	37	11	74331108	74331108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006591.1	+1	validated	p.S236N	1.000	313	0%	178	34.3%	-	-	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMPfam_CDC27
RNF169	254225	genome.wustl.edu	37	11	74546684	74546684	+	Missense_Mutation	SNP	G	G	A	rs184782150	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098638.1	+1	validated	p.E346K	1.000	257	0%	131	35.1%	-	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	NULL
XRRA1	143570	genome.wustl.edu	37	11	74632336	74632336	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182969.1	-1	validated	p.I185	1.000	161	0%	101	36.6%	-	-	-	-	-	superfamily_L domain-like
NEU3	10825	genome.wustl.edu	37	11	74705603	74705603	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006656.5	+1	reviewed	p.R48	1.000	251	0%	148	12.2%	-	-	-	-	-	superfamily_Sialidase
NEU3	10825	genome.wustl.edu	37	11	74716624	74716624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006656.5	+1	reviewed	p.R158H	1.000	338	0%	190	30.5%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Sialidase
SLCO2B1	11309	genome.wustl.edu	37	11	74913989	74913989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007256.3	+1	validated	p.F603L	1.000	330	0%	146	37%	-	-	possibly_damaging(0.842)	deleterious(0.04)	deleterious(0.671)	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLCO2B1	11309	genome.wustl.edu	37	11	74914419	74914419	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007256.3	+1	validated	p.S632	0.324	146	0%	129	39.5%	-	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
SERPINH1	871	genome.wustl.edu	37	11	75283017	75283017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001235.2	+1	reviewed	p.F382L	1.000	51	0%	45	17.8%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins
MAP6	4135	genome.wustl.edu	37	11	75298955	75298955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033063.1	-1	reviewed	p.P531S	0.000	189	0%	142	37.3%	-	-	benign(0.001)	tolerated(0.78)	neutral(0.001)	NULL
MOGAT2	80168	genome.wustl.edu	37	11	75428945	75428945	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025098.2	+1	provisional	p.F4	0.753	175	0%	117	44.4%	-	-	-	-	-	NULL
UVRAG	7405	genome.wustl.edu	37	11	75590944	75590944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003369.3	+1	reviewed	p.D98N	1.000	393	0%	272	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_C2
PRKRIR	5612	genome.wustl.edu	37	11	76063218	76063218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004705.2	-1	provisional	p.R326C	1.000	230	0%	86	34.9%	-	-	possibly_damaging(0.525)	deleterious(0.02)	deleterious(0.560)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76171128	76171128	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020193.3	+1	validated	p.K190N	1.000	297	0%	183	39.9%	-	-	unknown(0)	deleterious(0.01)	-	NULL
C11orf30	56946	genome.wustl.edu	37	11	76250645	76250645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020193.3	+1	validated	p.R840C	1.000	370	0%	191	37.2%	-	-	possibly_damaging(0.605)	deleterious(0.04)	deleterious(0.558)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76253269	76253269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020193.3	+1	validated	p.R856H	1.000	268	0%	188	38.3%	-	-	unknown(0)	deleterious(0)	-	NULL
MYO7A	4647	genome.wustl.edu	37	11	76885863	76885863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000260.3	+1	reviewed	p.R666Q	1.000	139	0%	81	34.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7A	4647	genome.wustl.edu	37	11	76910588	76910588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000260.3	+1	reviewed	p.R1526H	0.986	42	0%	19	31.6%	-	-	unknown(0)	deleterious(0.01)	-	NULL
MYO7A	4647	genome.wustl.edu	37	11	76916625	76916625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000260.3	+1	reviewed	p.A1867T	0.732	44	0%	40	32.5%	-	-	possibly_damaging(0.54)	deleterious(0)	deleterious(0.627)	HMMPfam_MyTH4,HMMSmart_SM00139
GDPD4	220032	genome.wustl.edu	37	11	76954797	76954797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182833.1	-1	provisional	p.K395E	0.000	241	0%	102	20.6%	-	-	benign(0.337)	tolerated(0.46)	neutral(0.118)	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
GDPD4	220032	genome.wustl.edu	37	11	76956391	76956391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182833.1	-1	provisional	p.L341I	0.071	659	0%	346	38.7%	-	-	possibly_damaging(0.654)	tolerated(0.14)	deleterious(0.480)	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
PAK1	5058	genome.wustl.edu	37	11	77103375	77103375	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128620.1	-1	reviewed	e1+1	1.000	228	0%	141	31.9%	-	-	-	-	-	-
RSF1	51773	genome.wustl.edu	37	11	77383146	77383146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016578.3	-1	validated	p.R1231Q	1.000	476	0%	212	41%	-	-	probably_damaging(0.974)	tolerated(0.19)	neutral(0.465)	NULL
RSF1	51773	genome.wustl.edu	37	11	77412629	77412629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016578.3	-1	validated	p.D549Y	0.177	401	0%	197	36.5%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
KCTD14	65987	genome.wustl.edu	37	11	77728126	77728126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023930.3	-1	validated	p.R94H	1.000	166	0%	132	30.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
NARS2	79731	genome.wustl.edu	37	11	78154789	78154789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024678.4	-1	validated	p.L394F	1.000	193	0%	101	33.7%	-	-	possibly_damaging(0.45)	deleterious(0.04)	deleterious(0.496)	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
ODZ4	26011	genome.wustl.edu	37	11	78780876	78780876	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.S38	1.000	85	0%	68	33.8%	-	-	-	-	-	HMMPfam_Ten_N
PRCP	5547	genome.wustl.edu	37	11	82535993	82535993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199418.2	-1	reviewed	p.K503N	0.893	220	0%	115	20.9%	-	-	benign(0.083)	tolerated(0.21)	neutral(0.050)	NULL
C11orf82	220042	genome.wustl.edu	37	11	82643838	82643838	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145018.3	+1	validated	p.V486	0.000	60	0%	21	33.3%	-	-	-	-	-	NULL
C11orf82	220042	genome.wustl.edu	37	11	82644272	82644272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145018.3	+1	validated	p.L631R	0.845	131	0%	72	40.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANKRD42	338699	genome.wustl.edu	37	11	82938844	82938844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182603.2	+1	validated	p.K253N	1.000	357	0%	169	34.3%	-	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TMEM126B	55863	genome.wustl.edu	37	11	85342831	85342831	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018480.2	+1	provisional	p.F31C	0.003	109	0%	45	35.6%	-	-	possibly_damaging(0.851)	deleterious(0.01)	deleterious(0.733)	HMMPfam_DUF1370
TMEM126B	55863	genome.wustl.edu	37	11	85347103	85347103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018480.2	+1	provisional	p.P145S	1.000	228	0%	114	33.3%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_DUF1370
TMEM126A	84233	genome.wustl.edu	37	11	85365187	85365187	+	Missense_Mutation	SNP	G	G	A	rs192269199	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032273.3	+1	validated	p.R56H	0.967	275	0%	155	36.1%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_DUF1370
TMEM126A	84233	genome.wustl.edu	37	11	85365210	85365210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032273.3	+1	validated	p.R64C	0.825	247	0%	159	39.6%	-	-	benign(0.125)	tolerated(0.13)	neutral(0.263)	HMMPfam_DUF1370
SYTL2	54843	genome.wustl.edu	37	11	85422207	85422207	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206927.2	-1	reviewed	p.P931	0.265	429	0%	211	39.3%	-	-	-	-	-	NULL
SYTL2	54843	genome.wustl.edu	37	11	85435969	85435969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206927.2	-1	reviewed	p.E511K	1.000	257	0%	127	26.8%	-	-	possibly_damaging(0.532)	deleterious(0)	deleterious(0.625)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85436612	85436612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206927.2	-1	reviewed	p.K296N	0.215	309	0%	169	29.6%	-	-	benign(0.378)	deleterious(0)	deleterious(0.565)	NULL
CCDC83	220047	genome.wustl.edu	37	11	85593621	85593621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173556.3	+1	provisional	p.E82D	0.002	327	0%	124	41.1%	-	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
EED	8726	genome.wustl.edu	37	11	85961343	85961343	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003797.2	+1	reviewed	p.D40	1.000	198	0%	73	27.4%	-	-	-	-	-	NULL
CCDC81	60494	genome.wustl.edu	37	11	86120368	86120368	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021827.4	+1	validated	p.E303D	1.000	153	0%	57	42.1%	-	-	probably_damaging(0.998)	tolerated(0.27)	deleterious(0.508)	NULL
PRSS23	11098	genome.wustl.edu	37	11	86519256	86519256	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007173.4	+1	validated	p.R191*	0.893	62	0%	36	41.7%	-	-	-	-	-	superfamily_Trypsin-like serine proteases
GRM5	2915	genome.wustl.edu	37	11	88386410	88386410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143831.2	-1	reviewed	p.F358C	1.000	193	0%	133	32.3%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
NOX4	50507	genome.wustl.edu	37	11	89059999	89059999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016931.3	-1	reviewed	p.K554N	1.000	439	0%	196	36.7%	-	-	possibly_damaging(0.719)	deleterious(0.03)	deleterious(0.625)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
NOX4	50507	genome.wustl.edu	37	11	89073313	89073313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016931.3	-1	reviewed	p.R455K	1.000	327	0%	137	33.6%	-	-	benign(0.201)	tolerated(0.78)	neutral(0.020)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
FOLH1B	219595	genome.wustl.edu	37	11	89424166	89424166	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153696.2	+1	provisional	p.R272	1.000	675	0%	362	13%	-	-	-	-	-	superfamily_SSF53187
TRIM77P	390231	genome.wustl.edu	37	11	89450660	89450660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343107.1	+1	model	p.T325A	0.000	338	0%	154	11%	-	-	-	-	-	NULL
ENSG00000234376	0	genome.wustl.edu	37	11	89486660	89486660	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411859	-1	known	p.E159*	0.087	303	0%	160	30.6%	-	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
TRIM49	57093	genome.wustl.edu	37	11	89531777	89531777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020358.2	-1	reviewed	p.E294K	0.014	121	0%	98	18.4%	-	-	benign(0.091)	tolerated(0.23)	neutral(0.048)	NULL
TRIM49	57093	genome.wustl.edu	37	11	89537414	89537414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020358.2	-1	reviewed	p.S75Y	0.000	543	0.2%	269	32.7%	-	-	possibly_damaging(0.91)	deleterious(0.02)	deleterious(0.746)	superfamily_SSF57850
UBTFL1	642623	genome.wustl.edu	37	11	89820247	89820247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143975.1	+1	provisional	p.S377N	0.060	940	0%	466	17.6%	-	-	-	-	-	NULL
NAALAD2	10003	genome.wustl.edu	37	11	89868837	89868837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005467.3	+1	reviewed	p.R65C	1.000	382	0.3%	180	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAALAD2	10003	genome.wustl.edu	37	11	89924849	89924849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005467.3	+1	reviewed	p.K719N	1.000	187	0%	111	28.8%	-	-	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain
CHORDC1	26973	genome.wustl.edu	37	11	89947196	89947196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012124.2	-1	validated	p.K107Q	1.000	510	0%	276	36.2%	-	-	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
ENSG00000214391	0	genome.wustl.edu	37	11	90016214	90016214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318973	+1	known	p.G130D	1.000	434	0%	239	43.1%	-	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
ENSG00000214391	0	genome.wustl.edu	37	11	90016449	90016449	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318973	+1	known	p.I208	1.000	561	0.2%	301	37.5%	-	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
ENSG00000214391	0	genome.wustl.edu	37	11	90016550	90016550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318973	+1	known	p.R242I	1.000	671	0%	350	34.3%	-	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
FAT3	120114	genome.wustl.edu	37	11	92086172	92086172	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.I298	0.667	369	0.5%	191	33%	-	-	-	-	-	superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92498152	92498152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.E1364D	1.000	553	0%	271	30.3%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92534060	92534060	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.P2627	0.496	220	0%	90	40%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
SLC36A4	120103	genome.wustl.edu	37	11	92899138	92899138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152313.2	-1	provisional	p.K271N	1.000	181	0%	74	32.4%	-	-	benign(0.099)	tolerated(0.07)	neutral(0.327)	HMMPfam_Aa_trans
KIAA1731	85459	genome.wustl.edu	37	11	93399951	93399951	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033395.1	+1	validated	p.Y26	1.000	325	0%	125	32.8%	-	-	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93430468	93430468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033395.1	+1	validated	p.S797Y	0.001	240	0%	98	39.8%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93463219	93463219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033395.1	+1	validated	p.Y2558H	0.376	141	0%	55	29.1%	-	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93463415	93463415	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033395.1	+1	validated	p.R2596*	1.000	280	0%	129	40.3%	-	-	-	-	-	NULL
TAF1D	79101	genome.wustl.edu	37	11	93471365	93471365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024116.3	-1	validated	p.K123N	0.008	340	0%	151	22.5%	-	-	possibly_damaging(0.948)	tolerated(0.13)	deleterious(0.643)	NULL
TAF1D	79101	genome.wustl.edu	37	11	93471597	93471597	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393259	-1	known	p.E32*	0.007	224	0%	101	41.6%	-	-	-	-	-	NULL
C11orf54	28970	genome.wustl.edu	37	11	93494833	93494833	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014039.2	+1	provisional	p.T259	0.937	201	0%	123	17.9%	-	-	-	-	-	NULL
HEPHL1	341208	genome.wustl.edu	37	11	93778857	93778857	+	Silent	SNP	C	C	T	rs181178133	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.L63	0.253	226	0%	135	38.5%	-	-	-	-	-	superfamily_Cupredoxin
HEPHL1	341208	genome.wustl.edu	37	11	93803660	93803660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.P395H	1.000	197	0%	104	29.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxin
HEPHL1	341208	genome.wustl.edu	37	11	93815631	93815631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.E588D	1.000	276	0%	124	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxin
HEPHL1	341208	genome.wustl.edu	37	11	93836136	93836136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.D878N	1.000	265	0%	108	25.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cupredoxin
HEPHL1	341208	genome.wustl.edu	37	11	93837764	93837764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.R918I	1.000	435	0%	167	27.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cupredoxin
HEPHL1	341208	genome.wustl.edu	37	11	93844215	93844215	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.T1064	0.025	146	0%	107	37.4%	-	-	-	-	-	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2
FOLR4	390243	genome.wustl.edu	37	11	94040783	94040783	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080486.1	+1	provisional	p.F219	0.007	191	0%	166	15.1%	-	-	-	-	-	NULL
GPR83	10888	genome.wustl.edu	37	11	94113625	94113625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016540.3	-1	validated	p.R321H	0.862	248	0%	122	40.2%	-	-	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMPfam_7tm_1,superfamily_SSF81321
FUT4	2526	genome.wustl.edu	37	11	94278546	94278546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002033.3	+1	reviewed	p.S416L	1.000	59	0%	41	36.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_10
PIWIL4	143689	genome.wustl.edu	37	11	94310653	94310653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152431.2	+1	validated	p.E170*	0.967	123	0%	94	27.7%	-	-	-	-	-	superfamily_PAZ domain
PIWIL4	143689	genome.wustl.edu	37	11	94326748	94326748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152431.2	+1	validated	p.R364I	0.994	297	0%	142	43%	-	-	benign(0.008)	tolerated(0.12)	neutral(0.261)	HMMPfam_PAZ,superfamily_PAZ domain
PIWIL4	143689	genome.wustl.edu	37	11	94335001	94335001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152431.2	+1	validated	p.R474Q	0.986	399	0.3%	199	38.2%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SESN3	143686	genome.wustl.edu	37	11	94910996	94910996	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144665.2	-1	provisional	p.K378	1.000	189	0%	125	28.8%	-	-	-	-	-	HMMPfam_PA26
CEP57	9702	genome.wustl.edu	37	11	95546701	95546701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014679.3	+1	validated	p.R151Q	0.993	290	0%	119	37%	-	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_DUF1167
MAML2	84441	genome.wustl.edu	37	11	95825993	95825993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032427.1	-1	validated	p.S401L	0.998	92	0%	53	39.6%	-	-	unknown(0)	deleterious(0.03)	-	NULL
ARHGAP42	143872	genome.wustl.edu	37	11	100830620	100830620	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152432.2	+1	provisional	p.L390W	1.000	316	0%	187	40.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GTPase activation domain GAP
PGR	5241	genome.wustl.edu	37	11	100909864	100909864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000926.4	-1	reviewed	p.L929F	1.000	195	0%	97	34%	-	-	possibly_damaging(0.716)	deleterious(0.03)	deleterious(0.623)	superfamily_Nuclear receptor ligand-binding domain
TRPC6	7225	genome.wustl.edu	37	11	101375177	101375177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004621.5	-1	reviewed	p.R175W	1.000	169	0%	104	34.6%	-	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_Ank,superfamily_Ankyrin repeat
ANGPTL5	253935	genome.wustl.edu	37	11	101762246	101762246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178127.4	-1	validated	p.R311C	0.254	368	0%	181	38.7%	-	-	possibly_damaging(0.929)	deleterious(0.05)	deleterious(0.722)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
ANGPTL5	253935	genome.wustl.edu	37	11	101776563	101776563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178127.4	-1	validated	p.S86Y	1.000	267	0%	166	14.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101815008	101815008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020802.2	+1	validated	p.E87D	0.735	318	0%	89	30.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101833416	101833416	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020802.2	+1	validated	p.T550	0.000	127	0%	51	29.4%	-	-	-	-	-	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101834044	101834044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020802.2	+1	validated	p.P760S	0.339	166	0%	60	33.3%	-	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101834512	101834512	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020802.2	+1	validated	p.E916*	1.000	116	0%	76	42.1%	-	-	-	-	-	NULL
BIRC3	330	genome.wustl.edu	37	11	102201974	102201974	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001165.3	+1	reviewed	e5+2	1.000	245	0%	105	16.2%	-	-	-	-	-	-
BIRC2	329	genome.wustl.edu	37	11	102221127	102221127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001166.3	+1	reviewed	p.M181T	1.000	183	0%	96	33.3%	-	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	superfamily_SSF57924
MMP10	4319	genome.wustl.edu	37	11	102649459	102649459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002425.2	-1	reviewed	p.F173C	1.000	200	0%	94	45.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP3	4314	genome.wustl.edu	37	11	102713242	102713242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002422.3	-1	reviewed	p.V140G	0.928	358	0%	159	37.7%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP12	4321	genome.wustl.edu	37	11	102736603	102736603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326227	-1	known	p.S370Y	0.029	273	0%	110	14.5%	-	-	-	-	-	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
DYNC2H1	79659	genome.wustl.edu	37	11	102984337	102984337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.E89D	0.976	395	0%	108	60.2%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	102995846	102995846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.R560Q	0.960	221	0%	119	42%	-	-	benign(0.051)	tolerated(0.06)	neutral(0.326)	HMMPfam_DHC_N1
DYNC2H1	79659	genome.wustl.edu	37	11	103014071	103014071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.E883D	1.000	472	0%	173	25.4%	-	-	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103325995	103325995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.L4187I	1.000	331	0%	164	33.5%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Dynein_heavy
DDI1	414301	genome.wustl.edu	37	11	103908053	103908053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001711.2	+1	validated	p.A168V	0.999	65	0%	48	16.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC643733	643733	genome.wustl.edu	37	11	104778295	104778295	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078449.1	-1	model	NULL	0.411	59	0%	33	15.2%	-	-	-	-	-	-
CASP5	838	genome.wustl.edu	37	11	104879652	104879652	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136112.1	-1	reviewed	p.I34	0.000	453	0%	226	25.2%	-	-	-	-	-	NULL
CARD16	114769	genome.wustl.edu	37	11	104915168	104915168	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017534.1	-1	validated	p.Y75*	0.001	574	0%	306	34.6%	-	-	-	-	-	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
CARD18	59082	genome.wustl.edu	37	11	105009768	105009768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021571.3	-1	validated	p.I13S	0.000	343	0%	207	31.4%	-	-	benign(0.015)	tolerated(0.55)	neutral(0.007)	NULL
GRIA4	2893	genome.wustl.edu	37	11	105775932	105775932	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000829.3	+1	reviewed	p.Q355*	1.000	450	0%	221	32.6%	-	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
MSANTD4	84437	genome.wustl.edu	37	11	105880290	105880290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032424.1	-1	validated	p.R337Q	0.991	260	0%	132	37.9%	-	-	benign(0.297)	tolerated(0.31)	neutral(0.119)	NULL
AASDHPPT	60496	genome.wustl.edu	37	11	105950307	105950307	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015423.2	+1	reviewed	p.S99	0.369	208	0%	91	34.1%	-	-	-	-	-	superfamily_4-PPT_transf
AASDHPPT	60496	genome.wustl.edu	37	11	105967543	105967543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015423.2	+1	reviewed	p.S280F	0.981	312	0%	168	32.7%	-	-	probably_damaging(0.976)	tolerated(0.33)	neutral(0.442)	NULL
GUCY1A2	2977	genome.wustl.edu	37	11	106810577	106810577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000855.1	-1	validated	p.A272V	0.511	249	0%	197	14.2%	-	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_HNOB,superfamily_H-NOX domain
CWF19L2	143884	genome.wustl.edu	37	11	107326466	107326466	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152434.2	-1	validated	p.E48*	1.000	369	0%	196	15.3%	-	-	-	-	-	NULL
ELMOD1	55531	genome.wustl.edu	37	11	107501245	107501245	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018712.3	+1	validated	p.I40	1.000	351	0%	153	38.6%	-	-	-	-	-	NULL
ELMOD1	55531	genome.wustl.edu	37	11	107506486	107506486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018712.3	+1	validated	p.L139V	0.991	428	0%	216	35.6%	-	-	benign(0.009)	tolerated(0.13)	neutral(0.253)	HMMPfam_ELMO_CED12
SLC35F2	54733	genome.wustl.edu	37	11	107729396	107729396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017515.4	-1	validated	p.K33T	0.513	17	0%	12	33.3%	-	-	benign(0.282)	deleterious(0.04)	neutral(0.435)	HMMPfam_DUF914
NPAT	4863	genome.wustl.edu	37	11	108032369	108032369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002519.2	-1	validated	p.K1148N	1.000	295	0%	136	11.8%	-	-	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	NULL
NPAT	4863	genome.wustl.edu	37	11	108032880	108032880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002519.2	-1	validated	p.S1013L	0.959	285	0%	154	40.9%	-	-	benign(0.002)	tolerated(0.77)	neutral(0.001)	NULL
ATM	472	genome.wustl.edu	37	11	108121636	108121636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.K482Q	1.000	199	0%	120	42.5%	-	-	possibly_damaging(0.69)	tolerated(0.15)	deleterious(0.488)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108159816	108159816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.L1408I	1.000	161	0%	74	16.2%	-	-	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108160407	108160407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.L1439I	1.000	217	0%	105	38.1%	-	-	benign(0.019)	tolerated(0.07)	neutral(0.320)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108205756	108205756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.R2691C	1.000	307	0%	102	20.6%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108216508	108216508	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.V2819	0.947	224	0%	108	35.2%	-	-	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
C11orf65	160140	genome.wustl.edu	37	11	108253854	108253854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152587.3	-1	validated	p.D279G	0.063	325	0%	174	40.2%	-	-	possibly_damaging(0.81)	deleterious(0.04)	deleterious(0.654)	NULL
C11orf65	160140	genome.wustl.edu	37	11	108277581	108277581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152587.3	-1	validated	p.S113Y	0.048	327	0%	126	39.7%	-	-	possibly_damaging(0.608)	tolerated(0.06)	deleterious(0.533)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108380289	108380289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015065.2	-1	validated	p.E1982G	0.998	295	0%	176	36.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108385140	108385140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015065.2	-1	validated	p.R365I	1.000	283	0%	160	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDX10	1662	genome.wustl.edu	37	11	108549147	108549147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004398.2	+1	reviewed	p.D215N	0.899	112	0%	83	16.9%	-	-	benign(0)	tolerated(1)	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZC3H12C	85463	genome.wustl.edu	37	11	110007471	110007471	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033390.1	+1	validated	p.K35	1.000	152	0%	102	28.4%	-	-	-	-	-	NULL
ZC3H12C	85463	genome.wustl.edu	37	11	110030104	110030104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033390.1	+1	validated	p.S346L	1.000	226	0%	101	24.8%	-	-	benign(0.34)	tolerated(0.07)	neutral(0.426)	NULL
BTG4	54766	genome.wustl.edu	37	11	111369451	111369451	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017589.2	-1	reviewed	p.K17N	0.998	431	0%	154	32.5%	-	-	probably_damaging(0.955)	tolerated(0.19)	neutral(0.448)	HMMPfam_BTG,HMMSmart_btg1
LOC728196	728196	genome.wustl.edu	37	11	111384128	111384128	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040780.2	+1	model	NULL	0.000	323	0%	254	42.5%	-	-	-	-	-	-
SIK2	23235	genome.wustl.edu	37	11	111571609	111571609	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015191.1	+1	validated	e5-1	1.000	199	0%	121	35.5%	-	-	-	-	-	-
ALG9	79796	genome.wustl.edu	37	11	111680413	111680413	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024740.2	-1	reviewed	p.E563*	1.000	510	0%	222	33.8%	-	-	-	-	-	NULL
ALG9	79796	genome.wustl.edu	37	11	111708222	111708222	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024740.2	-1	reviewed	p.R481*	1.000	356	0%	171	39.8%	-	-	-	-	-	HMMPfam_Glyco_transf_22
FDXACB1	91893	genome.wustl.edu	37	11	111745880	111745880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138378.1	-1	validated	p.K547N	0.000	266	0%	146	41.8%	-	-	possibly_damaging(0.824)	tolerated(0.24)	neutral(0.349)	HMMPfam_FDX-ACB,superfamily_Anticodon-binding domain of PheRS
FDXACB1	91893	genome.wustl.edu	37	11	111746443	111746443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138378.1	-1	validated	p.E360K	0.973	201	0%	112	42%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
C11orf57	55216	genome.wustl.edu	37	11	111953435	111953435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082969.1	+1	validated	p.K207N	1.000	194	0%	85	37.6%	-	-	possibly_damaging(0.564)	deleterious(0)	deleterious(0.637)	NULL
SDHD	6392	genome.wustl.edu	37	11	111959626	111959626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000375549	+1	known	p.E69K	1.000	218	0%	132	43.2%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_CybS,superfamily_SSF81343
TEX12	56158	genome.wustl.edu	37	11	112040026	112040026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031275.4	+1	reviewed	p.R12I	0.998	486	0%	273	35.5%	-	-	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	NULL
BCO2	83875	genome.wustl.edu	37	11	112065392	112065392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031938.4	+1	validated	p.F217S	1.000	347	0%	195	30.8%	-	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	HMMPfam_RPE65
BCO2	83875	genome.wustl.edu	37	11	112086952	112086952	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031938.4	+1	validated	p.E509*	0.924	416	0%	231	37.2%	-	-	-	-	-	HMMPfam_RPE65
PTS	5805	genome.wustl.edu	37	11	112104240	112104240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000317.2	+1	reviewed	p.E134K	1.000	200	0.5%	84	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PTPS,superfamily_Tetrahydrobiopterin biosynthesis enzymes-like
NCAM1	4684	genome.wustl.edu	37	11	113103450	113103450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401611	+1	known	p.D351A	1.000	260	0%	96	37.5%	-	-	possibly_damaging(0.827)	tolerated(0.75)	neutral(0.316)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
TTC12	54970	genome.wustl.edu	37	11	113209545	113209545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017868.3	+1	validated	p.T209I	0.961	295	0%	175	28%	-	-	possibly_damaging(0.832)	deleterious(0.01)	deleterious(0.723)	superfamily_ARM-type_fold
ANKK1	255239	genome.wustl.edu	37	11	113264381	113264381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178510.1	+1	reviewed	p.R122C	0.992	142	0%	124	35.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Kinase_like,HMMPfam_Pkinase
DRD2	1813	genome.wustl.edu	37	11	113285101	113285101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000795.3	-1	reviewed	p.R269I	1.000	222	0%	126	35.7%	-	-	benign(0.017)	deleterious(0.02)	neutral(0.384)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZW10	9183	genome.wustl.edu	37	11	113631029	113631029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004724.2	-1	reviewed	p.S161Y	1.000	384	0%	176	26.7%	-	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_Zw10
CLDN25	644672	genome.wustl.edu	37	11	113651032	113651032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101389.1	+1	inferred	p.A172V	1.000	464	0%	280	35.7%	-	-	possibly_damaging(0.586)	deleterious(0.03)	deleterious(0.567)	HMMPfam_PMP22_Claudin
LOC390251	390251	genome.wustl.edu	37	11	113660389	113660389	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016610.3	+1	model	NULL	1.000	75	0%	35	40%	-	-	-	-	-	-
USP28	57646	genome.wustl.edu	37	11	113701595	113701595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020886.2	-1	validated	p.R302C	1.000	491	0%	296	39.9%	-	-	possibly_damaging(0.732)	tolerated(0.17)	neutral(0.327)	HMMPfam_UCH,superfamily_Cysteine proteinases
HTR3A	3359	genome.wustl.edu	37	11	113860239	113860239	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213621.3	+1	reviewed	p.S429	0.001	90	0%	51	29.4%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ZBTB16	7704	genome.wustl.edu	37	11	114121233	114121233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018011.1	+1	reviewed	p.D660N	1.000	94	0%	53	37.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RBM7	10179	genome.wustl.edu	37	11	114276434	114276434	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016090.2	+1	provisional	p.Y117	1.000	308	0%	164	33.5%	-	-	unknown(0)	-	-	NULL
FAM55D	54827	genome.wustl.edu	37	11	114453518	114453518	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077639.1	-1	validated	p.R108*	0.050	1424	0.1%	824	34.3%	-	-	-	-	-	NULL
APOA4	337	genome.wustl.edu	37	11	116691916	116691916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000482.3	-1	reviewed	p.Q286H	0.997	46	0%	30	56.7%	-	-	benign(0.033)	tolerated(0.12)	neutral(0.262)	HMMPfam_Apolipoprotein,superfamily_Apolipoprotein
TAGLN	6876	genome.wustl.edu	37	11	117073783	117073783	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001522.1	+1	reviewed	p.I18	0.828	242	0%	129	38.8%	-	-	-	-	-	superfamily_Calponin-homology domain CH-domain
PCSK7	9159	genome.wustl.edu	37	11	117077469	117077469	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004716.2	-1	reviewed	p.F642	1.000	628	0%	425	17.9%	-	-	-	-	-	NULL
RNF214	257160	genome.wustl.edu	37	11	117152324	117152324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077239.1	+1	validated	p.F415L	0.999	181	0%	99	25.3%	-	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	NULL
CEP164	22897	genome.wustl.edu	37	11	117232698	117232698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014956.4	+1	validated	p.E181*	0.518	360	0%	186	34.4%	-	-	-	-	-	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117375696	117375696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.L769F	1.000	163	0%	116	35.3%	-	-	possibly_damaging(0.917)	deleterious(0.01)	deleterious(0.774)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DSCAML1	57453	genome.wustl.edu	37	11	117647526	117647526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.D224G	1.000	220	0%	126	38.1%	-	-	probably_damaging(0.961)	tolerated(0.11)	deleterious(0.675)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
DSCAML1	57453	genome.wustl.edu	37	11	117651359	117651359	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.P131	0.529	152	0%	115	47%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
TMPRSS13	84000	genome.wustl.edu	37	11	117789227	117789227	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077263.1	-1	validated	p.P116	0.001	262	0%	194	30.4%	-	-	-	-	-	NULL
TMPRSS4	56649	genome.wustl.edu	37	11	117978571	117978571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019894.3	+1	reviewed	p.R175C	0.972	180	0%	99	36.4%	-	-	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	HMMSmart_SM00202,superfamily_SRCR-like
TMPRSS4	56649	genome.wustl.edu	37	11	117982510	117982510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019894.3	+1	reviewed	p.V213A	0.955	170	0%	130	32.3%	-	-	benign(0.123)	tolerated(0.71)	neutral(0.011)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TMPRSS4	56649	genome.wustl.edu	37	11	117985629	117985629	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019894.3	+1	reviewed	p.T332	0.007	142	0.7%	83	13.3%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SCN4B	6330	genome.wustl.edu	37	11	118011963	118011963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174934.3	-1	reviewed	p.K184N	1.000	141	0%	90	38.9%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
ENSG00000244817	0	genome.wustl.edu	37	11	118185007	118185007	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501549	-1	known	NULL	0.011	22	0%	13	30.8%	-	-	-	-	-	-
UBE4A	9354	genome.wustl.edu	37	11	118235810	118235810	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004788.2	+1	reviewed	p.E5	1.000	383	0%	177	39%	-	-	-	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118359367	118359367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.K1457N	1.000	423	0%	209	34.4%	-	-	probably_damaging(0.992)	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
MLL	4297	genome.wustl.edu	37	11	118392633	118392633	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.R3886*	1.000	176	0%	102	41.2%	-	-	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ARCN1	372	genome.wustl.edu	37	11	118463513	118463513	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001655.4	+1	reviewed	p.D358	0.930	193	0%	107	42.1%	-	-	-	-	-	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
ARCN1	372	genome.wustl.edu	37	11	118468455	118468455	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001655.4	+1	reviewed	p.I425	0.860	254	0%	173	15.6%	-	-	-	-	-	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
HYOU1	10525	genome.wustl.edu	37	11	118918663	118918663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130991.1	-1	reviewed	p.L836F	1.000	167	0%	139	13.7%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
VPS11	55823	genome.wustl.edu	37	11	118948349	118948349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.D521Y	1.000	225	0%	135	30.4%	-	-	-	-	-	superfamily_ARM repeat
NLRX1	79671	genome.wustl.edu	37	11	119044206	119044206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024618.2	+1	reviewed	p.R83H	0.982	47	2.1%	31	35.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NLRX1	79671	genome.wustl.edu	37	11	119050974	119050974	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024618.2	+1	reviewed	p.V748	1.000	15	0%	15	40%	-	-	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
CBL	867	genome.wustl.edu	37	11	119169186	119169186	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005188.2	+1	reviewed	p.L790	0.602	304	0%	157	45.2%	-	-	-	-	-	NULL
MFRP	83552	genome.wustl.edu	37	11	119215346	119215346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031433.2	-1	reviewed	p.F298L	0.018	176	0%	82	37.8%	-	-	possibly_damaging(0.649)	tolerated(0.43)	neutral(0.242)	superfamily_LDL receptor-like module
POU2F3	25833	genome.wustl.edu	37	11	120175859	120175859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014352.2	+1	validated	p.E189K	1.000	242	0%	106	35.8%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains
ARHGEF12	23365	genome.wustl.edu	37	11	120280116	120280116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.K52N	1.000	504	0%	290	36.9%	-	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
ARHGEF12	23365	genome.wustl.edu	37	11	120292551	120292551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.R113Q	1.000	234	0%	95	35.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ARHGEF12	23365	genome.wustl.edu	37	11	120308038	120308038	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.E316*	1.000	313	0%	141	21.3%	-	-	-	-	-	NULL
ARHGEF12	23365	genome.wustl.edu	37	11	120319008	120319008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.R563Q	1.000	343	0.3%	182	37.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRIK4	2900	genome.wustl.edu	37	11	120852859	120852859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014619.2	+1	reviewed	p.C814R	1.000	973	0%	364	32.4%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Lig_chan
TECTA	7007	genome.wustl.edu	37	11	120983834	120983834	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.L180	1.000	172	0%	117	25.6%	-	-	-	-	-	HMMPfam_NIDO,HMMSmart_SM00539
TECTA	7007	genome.wustl.edu	37	11	121028872	121028872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.S1543L	0.998	142	0%	81	35.8%	-	-	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	HMMPfam_VWD,HMMSmart_SM00216
TECTA	7007	genome.wustl.edu	37	11	121030897	121030897	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.I1581	1.000	200	0%	145	33.8%	-	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
SC5DL	6309	genome.wustl.edu	37	11	121175082	121175082	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024956.2	+1	reviewed	p.R75*	0.735	348	0.3%	163	27.6%	-	-	-	-	-	NULL
SORL1	6653	genome.wustl.edu	37	11	121340814	121340814	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003105.4	+1	reviewed	p.A128	0.207	171	0%	92	33.7%	-	-	-	-	-	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
MIRLET7A2	406882	genome.wustl.edu	37	11	122017261	122017261	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362105	-1	known	NULL	1.000	354	0%	313	33.5%	-	-	-	-	-	-
UBASH3B	84959	genome.wustl.edu	37	11	122526785	122526785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032873.4	+1	validated	p.L10F	0.952	12	0%	17	58.8%	-	-	unknown(0)	-	-	NULL
UBASH3B	84959	genome.wustl.edu	37	11	122653843	122653843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032873.4	+1	validated	p.E228D	1.000	540	0%	296	36.8%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
HSPA8	3312	genome.wustl.edu	37	11	122929844	122929844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006597.3	-1	reviewed	p.R416C	1.000	433	0%	289	37.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
HSPA8	3312	genome.wustl.edu	37	11	122930653	122930653	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006597.3	-1	reviewed	p.I216	1.000	125	0%	86	31.4%	-	-	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
GRAMD1B	57476	genome.wustl.edu	37	11	123455031	123455031	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020716.1	+1	validated	p.S82	0.998	511	0.2%	246	34.1%	-	-	-	-	-	NULL
ZNF202	7753	genome.wustl.edu	37	11	123600386	123600386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003455.2	-1	validated	p.L184M	0.981	255	0%	137	32.1%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
OR6X1	390260	genome.wustl.edu	37	11	123624366	123624366	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005188.1	-1	provisional	p.I287M	1.000	213	0%	98	12.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6T1	219874	genome.wustl.edu	37	11	123814015	123814015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005187.1	-1	provisional	p.F177L	0.972	109	0%	63	38.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR6T1	219874	genome.wustl.edu	37	11	123814409	123814409	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005187.1	-1	provisional	p.I46S	0.226	139	0%	64	34.4%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_7tm_1,superfamily_SSF81321
OR10G7	390265	genome.wustl.edu	37	11	123908967	123908967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004463.1	-1	provisional	p.L248I	0.046	599	0%	326	31.3%	-	-	possibly_damaging(0.894)	tolerated(0.47)	neutral(0.363)	HMMPfam_7tm_1,superfamily_SSF81321
OR10G7	390265	genome.wustl.edu	37	11	123909003	123909003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004463.1	-1	provisional	p.A236T	1.000	553	0%	383	36.8%	-	-	benign(0.17)	deleterious(0)	neutral(0.460)	HMMPfam_7tm_1,superfamily_SSF81321
OR10G7	390265	genome.wustl.edu	37	11	123909484	123909484	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004463.1	-1	provisional	p.T75	0.046	622	0%	410	29.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8B8	26493	genome.wustl.edu	37	11	124310774	124310774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012378.1	-1	provisional	p.D70Y	0.999	503	0%	198	13.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8A1	390275	genome.wustl.edu	37	11	124440055	124440055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005194.1	+1	provisional	p.L31I	0.901	221	0%	156	34%	-	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	superfamily_SSF81321
OR8A1	390275	genome.wustl.edu	37	11	124440142	124440142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005194.1	+1	provisional	p.L60M	0.987	360	0%	209	12%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_7tm_1,superfamily_SSF81321
PANX3	116337	genome.wustl.edu	37	11	124489663	124489663	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052959.2	+1	reviewed	p.I337	1.000	415	0%	247	37.2%	-	-	-	-	-	NULL
SIAE	54414	genome.wustl.edu	37	11	124530643	124530643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170601.3	-1	validated	p.E96K	0.342	221	0%	133	36.1%	-	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
VSIG2	23584	genome.wustl.edu	37	11	124618541	124618541	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014312.3	-1	provisional	p.T235	0.993	253	0.4%	156	40.4%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
MSANTD2	79684	genome.wustl.edu	37	11	124669869	124669869	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024631.2	-1	validated	p.F136	1.000	5	0.000	6	0.667	-	-	-	-	-	NULL
ROBO3	64221	genome.wustl.edu	37	11	124741022	124741022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022370.3	+1	reviewed	p.K382N	1.000	62	0%	36	52.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
FEZ1	9638	genome.wustl.edu	37	11	125359510	125359510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005103.3	-1	reviewed	p.S55I	1.000	205	0%	125	44%	-	-	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	NULL
EI24	9538	genome.wustl.edu	37	11	125448106	125448106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000343678	+1	known	p.L132F	1.000	726	0%	482	13.9%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_EI24
STT3A	3703	genome.wustl.edu	37	11	125475547	125475547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152713.3	+1	validated	p.L178F	0.993	470	0%	193	18.7%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_STT3
PUS3	83480	genome.wustl.edu	37	11	125765682	125765682	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031307.3	-1	validated	p.V127	0.998	98	0%	49	40.8%	-	-	-	-	-	HMMPfam_PseudoU_synth_1,superfamily_PsdUridine_synth_cat_dom
DDX25	29118	genome.wustl.edu	37	11	125781357	125781357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013264.3	+1	reviewed	p.F258L	0.997	350	0%	193	35.8%	-	-	benign(0.008)	tolerated(1)	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDON	50937	genome.wustl.edu	37	11	125867195	125867195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016952.4	-1	validated	p.E757K	1.000	176	0%	86	40.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SRPR	6734	genome.wustl.edu	37	11	126134929	126134929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003139.3	-1	reviewed	p.R484C	1.000	146	0%	90	32.2%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_SRP54,HMMSmart_AAA,superfamily_SSF52540
KIRREL3	84623	genome.wustl.edu	37	11	126294583	126294583	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032531.3	-1	reviewed	p.F743	1.000	411	0%	234	32.1%	-	-	-	-	-	NULL
FLI1	2313	genome.wustl.edu	37	11	128680646	128680646	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002017.3	+1	validated	p.T374	0.072	323	0%	194	35.6%	-	-	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
FLI1	2313	genome.wustl.edu	37	11	128680760	128680760	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002017.3	+1	validated	p.S412	0.999	486	0%	233	34.3%	-	-	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
FLI1	2313	genome.wustl.edu	37	11	128680769	128680769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002017.3	+1	validated	p.F415L	1.000	457	0%	235	36.6%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	"superfamily_""Winged helix"" DNA-binding domain"
KCNJ5	3762	genome.wustl.edu	37	11	128781607	128781607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000890.3	+1	reviewed	p.E147K	1.000	208	0%	174	31%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_IRK,superfamily_SSF81324
PRDM10	56980	genome.wustl.edu	37	11	129780380	129780380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020228.2	-1	reviewed	p.R1056C	1.000	57	0%	54	31.5%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ST14	6768	genome.wustl.edu	37	11	130058071	130058071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021978.3	+1	reviewed	p.E48D	1.000	208	0%	134	33.6%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
ST14	6768	genome.wustl.edu	37	11	130058082	130058082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021978.3	+1	reviewed	p.P52L	0.918	198	0%	133	29.3%	-	-	benign(0.092)	tolerated(0.08)	neutral(0.307)	NULL
ST14	6768	genome.wustl.edu	37	11	130058478	130058478	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021978.3	+1	reviewed	p.E99*	0.759	132	0%	80	22.5%	-	-	-	-	-	HMMPfam_SEA,superfamily_SSF82671
ZBTB44	29068	genome.wustl.edu	37	11	130106794	130106794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397753	-1	known	p.E488K	1.000	64	0%	49	38.8%	-	-	probably_damaging(0.978)	tolerated(0.33)	neutral(0.445)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB44	29068	genome.wustl.edu	37	11	130108442	130108442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014155.4	-1	validated	p.E388D	0.993	285	0%	145	33.1%	-	-	benign(0.273)	deleterious(0.04)	neutral(0.378)	NULL
ADAMTS15	170689	genome.wustl.edu	37	11	130331510	130331510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139055.2	+1	reviewed	p.E362K	1.000	96	0%	64	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,superfamily_SSF55486
ADAMTS15	170689	genome.wustl.edu	37	11	130332438	130332438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139055.2	+1	reviewed	p.E435D	0.973	19	0%	20	20%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
ADAMTS15	170689	genome.wustl.edu	37	11	130343673	130343673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139055.2	+1	reviewed	p.R937H	1.000	27	0%	19	57.9%	-	-	benign(0.013)	deleterious(0.02)	neutral(0.384)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SNX19	399979	genome.wustl.edu	37	11	130749589	130749589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014758.2	-1	validated	p.L926I	1.000	360	0%	214	37.4%	-	-	probably_damaging(0.996)	tolerated(0.51)	deleterious(0.471)	HMMPfam_Nexin_C
IGSF9B	22997	genome.wustl.edu	37	11	133806052	133806052	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014987.1	-1	validated	p.T239	0.583	153	0%	75	10.7%	-	-	-	-	-	HMMSmart_FN3,HMMPfam_I-set,superfamily_SSF48726
GLB1L3	112937	genome.wustl.edu	37	11	134177019	134177019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080407.2	+1	validated	p.R293I	0.000	926	0.2%	399	36.6%	-	-	benign(0.055)	tolerated(0.2)	neutral(0.053)	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
LOC100288881	100288881	genome.wustl.edu	37	12	176414	176414	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343144.1	+1	model	p.E122	0.000	38	0%	33	18.2%	-	-	-	-	-	NULL
LOC100288881	100288881	genome.wustl.edu	37	12	176596	176596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343144.1	+1	model	p.R183K	1.000	127	0%	62	12.9%	-	-	benign(0.094)	tolerated(0.14)	neutral(0.257)	NULL
IQSEC3	440073	genome.wustl.edu	37	12	247456	247456	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015232.1	+1	validated	p.Y6	1.000	130	0.8%	70	37.1%	-	-	-	-	-	NULL
SLC6A13	6540	genome.wustl.edu	37	12	369199	369199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016615.2	-1	provisional	p.G7D	0.018	208	0%	174	36.2%	-	-	possibly_damaging(0.811)	deleterious(0.03)	deleterious(0.670)	NULL
WNK1	65125	genome.wustl.edu	37	12	863407	863407	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.E226*	1.000	47	0%	32	21.9%	-	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
ERC1	23085	genome.wustl.edu	37	12	1137630	1137630	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178040.2	+1	reviewed	p.K187	1.000	207	0%	116	33.6%	-	-	-	-	-	HMMPfam_Cast
ERC1	23085	genome.wustl.edu	37	12	1292513	1292513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178040.2	+1	reviewed	p.R695W	0.317	225	0%	112	40.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cast
LRTM2	654429	genome.wustl.edu	37	12	1943542	1943542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039029.2	+1	validated	p.E256D	0.970	19	0%	13	38.5%	-	-	possibly_damaging(0.857)	tolerated(0.06)	deleterious(0.653)	superfamily_L domain-like
CACNA1C	775	genome.wustl.edu	37	12	2566851	2566851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.R246W	1.000	115	0%	57	14%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2702483	2702483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.A879T	1.000	368	0%	176	40.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CACNA1C	775	genome.wustl.edu	37	12	2786930	2786930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.P1711H	1.000	69	0%	61	36.1%	-	-	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	NULL
CACNA1C	775	genome.wustl.edu	37	12	2788732	2788732	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.G1786	0.819	245	0.8%	122	41.8%	-	-	-	-	-	NULL
CACNA1C	775	genome.wustl.edu	37	12	2789548	2789548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399634	+1	known	p.L1822M	0.021	51	0%	40	25%	-	-	possibly_damaging(0.892)	tolerated(0.22)	neutral(0.393)	NULL
ITFG2	55846	genome.wustl.edu	37	12	2929370	2929370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018463.3	+1	validated	p.K175N	1.000	252	0%	178	40.4%	-	-	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	NULL
EFCAB4B	84766	genome.wustl.edu	37	12	3753787	3753787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144958.1	-1	validated	p.R380W	0.692	348	0%	237	35.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCND2	894	genome.wustl.edu	37	12	4398036	4398036	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001759.3	+1	validated	p.S200	0.724	182	0%	111	39.6%	-	-	-	-	-	HMMPfam_Cyclin_C,superfamily_Cyclin-like
C12orf5	57103	genome.wustl.edu	37	12	4459007	4459007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020375.2	+1	reviewed	p.R72I	0.985	279	0%	144	34.7%	-	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	HMMPfam_PGAM,superfamily_SSF53254
FGF23	8074	genome.wustl.edu	37	12	4479868	4479868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020638.2	-1	reviewed	p.H133N	0.988	48	0%	18	33.3%	-	-	benign(0)	tolerated(0.48)	neutral(0.011)	HMMSmart_FGF,superfamily_Cytok_IL1_like
C12orf4	57102	genome.wustl.edu	37	12	4634532	4634532	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020374.2	-1	predicted	p.N206H	1.000	434	0%	239	39.3%	-	-	possibly_damaging(0.903)	tolerated(0.07)	deleterious(0.677)	HMMPfam_DUF2362
DYRK4	8798	genome.wustl.edu	37	12	4702224	4702224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003845.1	+1	provisional	p.G59S	1.000	176	0%	97	36.1%	-	-	benign(0.206)	tolerated(0.42)	neutral(0.034)	NULL
AKAP3	10566	genome.wustl.edu	37	12	4737437	4737437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006422.2	-1	reviewed	p.N211H	0.001	277	0%	157	35.7%	-	-	probably_damaging(0.958)	tolerated(0.08)	deleterious(0.702)	HMMPfam_AKAP_110,HMMSmart_SM00807
KCNA6	3742	genome.wustl.edu	37	12	4919439	4919439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002235.3	+1	reviewed	p.D78N	1.000	61	0%	58	32.8%	-	-	probably_damaging(0.988)	tolerated(0.13)	deleterious(0.690)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCNA6	3742	genome.wustl.edu	37	12	4919731	4919731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002235.3	+1	reviewed	p.G175D	1.000	70	0%	70	37.1%	-	-	possibly_damaging(0.904)	tolerated(0.05)	deleterious(0.704)	superfamily_SSF81324
LOC390282	390282	genome.wustl.edu	37	12	5142021	5142021	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_372447.5	-1	model	p.I25	0.996	54	0%	39	30.8%	-	-	-	-	-	NULL
KCNA5	3741	genome.wustl.edu	37	12	5153915	5153915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002234.2	+1	reviewed	p.R201H	1.000	75	0%	48	22.9%	-	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
ANO2	57101	genome.wustl.edu	37	12	5722072	5722072	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020373.2	-1	validated	p.E661*	1.000	191	0%	155	31.6%	-	-	-	-	-	NULL
VWF	7450	genome.wustl.edu	37	12	6128779	6128779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000552.3	-1	reviewed	p.D1269N	0.003	72	0%	40	27.5%	-	-	benign(0.003)	tolerated(0.44)	neutral(0.013)	NULL
VWF	7450	genome.wustl.edu	37	12	6145582	6145582	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000552.3	-1	reviewed	p.E840*	0.997	175	0%	114	21.9%	-	-	-	-	-	HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors
CD9	928	genome.wustl.edu	37	12	6344610	6344610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382519	+1	known	p.F188L	0.000	493	0%	267	36.3%	-	-	-	-	-	NULL
LTBR	4055	genome.wustl.edu	37	12	6495234	6495234	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002342.1	+1	reviewed	p.E159*	0.001	80	0%	61	36.1%	-	-	-	-	-	HMMSmart_TNFR
TAPBPL	55080	genome.wustl.edu	37	12	6566689	6566689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018009.4	+1	validated	p.R228Q	1.000	176	0.6%	130	27.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CHD4	1108	genome.wustl.edu	37	12	6701219	6701219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.Y985H	1.000	355	0%	188	39.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N
CHD4	1108	genome.wustl.edu	37	12	6703726	6703726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.R738C	1.000	383	0%	194	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD4	1108	genome.wustl.edu	37	12	6703798	6703798	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.R714*	1.000	246	0.4%	141	40.4%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD4	1108	genome.wustl.edu	37	12	6711664	6711664	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	e2-1	0.996	499	0%	312	38.8%	-	-	-	-	-	-
GNB3	2784	genome.wustl.edu	37	12	6952674	6952674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002075.2	+1	reviewed	p.L139F	1.000	219	0%	149	40.3%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
C1R	715	genome.wustl.edu	37	12	7242795	7242795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290575	-1	known	p.S108Y	0.941	165	0.6%	99	39.4%	-	-	possibly_damaging(0.621)	deleterious(0)	deleterious(0.661)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
C1R	715	genome.wustl.edu	37	12	7242812	7242812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290575	-1	known	p.F102L	1.000	135	0%	90	41.1%	-	-	benign(0.073)	tolerated(0.17)	neutral(0.064)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PEX5	5830	genome.wustl.edu	37	12	7362769	7362769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131023.1	+1	reviewed	p.D639N	1.000	104	0%	70	44.3%	-	-	possibly_damaging(0.534)	deleterious(0.01)	deleterious(0.586)	superfamily_SSF48452
ACSM4	341392	genome.wustl.edu	37	12	7457078	7457078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080454.1	+1	provisional	p.N51H	0.998	284	0%	169	34.3%	-	-	benign(0.011)	tolerated(0.49)	neutral(0.011)	superfamily_SSF56801
ACSM4	341392	genome.wustl.edu	37	12	7479678	7479678	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080454.1	+1	provisional	p.K548T	1.000	248	0%	110	33.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56801
CD163	9332	genome.wustl.edu	37	12	7636131	7636131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004244.4	-1	validated	p.P974S	0.008	195	0%	124	44.4%	-	-	benign(0)	tolerated(1)	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163	9332	genome.wustl.edu	37	12	7639099	7639099	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004244.4	-1	validated	p.C818*	1.000	119	0%	88	37.5%	-	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163	9332	genome.wustl.edu	37	12	7651698	7651698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004244.4	-1	validated	p.T182A	0.999	282	0%	139	30.9%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
APOBEC1	339	genome.wustl.edu	37	12	7803713	7803713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001644.3	-1	reviewed	p.F156S	1.000	190	0%	119	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APOBEC_C,superfamily_Cytidine_deaminase-like
APOBEC1	339	genome.wustl.edu	37	12	7805085	7805085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001644.3	-1	reviewed	p.L131I	0.991	88	0%	47	29.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_APOBEC_C,superfamily_Cytidine_deaminase-like
GDF3	9573	genome.wustl.edu	37	12	7848139	7848139	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020634.1	-1	reviewed	p.A62	0.000	118	0%	48	12.5%	-	-	-	-	-	NULL
FOXJ2	55810	genome.wustl.edu	37	12	8205425	8205425	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018416.2	+1	validated	p.F568	1.000	126	0%	84	41.7%	-	-	-	-	-	NULL
CLEC4A	50856	genome.wustl.edu	37	12	8281864	8281864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016184.3	+1	reviewed	p.F68L	0.335	215	0%	99	32.3%	-	-	benign(0.02)	tolerated(0.64)	neutral(0.004)	NULL
FAM90A1	55138	genome.wustl.edu	37	12	8375299	8375299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018088.3	-1	validated	p.E172K	0.000	24	0%	32	43.8%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
A2ML1	144568	genome.wustl.edu	37	12	8994115	8994115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144670.3	+1	validated	p.T411A	0.006	304	0%	169	34.3%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
PHC1	1911	genome.wustl.edu	37	12	9089904	9089904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004426.2	+1	reviewed	p.I870M	1.000	75	0%	44	31.8%	-	-	unknown(0)	deleterious(0.02)	-	NULL
A2M	2	genome.wustl.edu	37	12	9260186	9260186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000014.4	-1	reviewed	p.K271N	0.136	213	0%	132	32.6%	-	-	benign(0.014)	tolerated(0.14)	neutral(0.250)	NULL
A2M	2	genome.wustl.edu	37	12	9264763	9264763	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000014.4	-1	reviewed	p.N159Y	0.231	215	0%	103	30.1%	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_A2M_N
PZP	5858	genome.wustl.edu	37	12	9309927	9309927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002864.2	-1	validated	p.F1132L	0.763	222	0%	113	35.4%	-	-	benign(0.024)	tolerated(0.25)	neutral(0.038)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
PZP	5858	genome.wustl.edu	37	12	9321503	9321503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002864.2	-1	validated	p.S690Y	0.000	324	0%	157	33.8%	-	-	possibly_damaging(0.912)	deleterious(0.04)	deleterious(0.712)	NULL
DDX11L8	100302090	genome.wustl.edu	37	12	9447436	9447436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341155	+1	known	p.E168D	0.018	263	0%	202	21.8%	-	-	-	-	-	HMMSmart_SM00488,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX11L8	100302090	genome.wustl.edu	37	12	9455295	9455295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341155	+1	known	p.G458R	1.000	219	0%	123	38.2%	-	-	-	-	-	NULL
DDX12P	440081	genome.wustl.edu	37	12	9578131	9578131	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432996	-1	known	p.I566	0.841	175	0%	114	28.1%	-	-	-	-	-	NULL
CLEC1B	51266	genome.wustl.edu	37	12	10149347	10149347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398939	-1	known	p.S55Y	0.000	39	0%	27	22.2%	-	-	possibly_damaging(0.46)	tolerated(0.13)	neutral(0.403)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
CLEC1B	51266	genome.wustl.edu	37	12	10149355	10149355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398939	-1	known	p.F52L	0.003	45	0%	34	32.4%	-	-	benign(0.059)	tolerated(0.2)	neutral(0.053)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
CLEC12B	387837	genome.wustl.edu	37	12	10167334	10167334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129998.1	+1	validated	p.T135A	0.171	171	0%	110	19.1%	-	-	benign(0.003)	tolerated(0.52)	neutral(0.009)	NULL
CLEC9A	283420	genome.wustl.edu	37	12	10205299	10205299	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207345.2	+1	provisional	p.E5*	0.710	275	0%	145	33.1%	-	-	-	-	-	NULL
CLEC9A	283420	genome.wustl.edu	37	12	10217366	10217366	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207345.2	+1	provisional	p.G169	0.000	455	0%	219	35.6%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
OLR1	4973	genome.wustl.edu	37	12	10319347	10319347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002543.3	-1	reviewed	p.L130F	0.998	616	0%	301	32.6%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
KLRC4	8302	genome.wustl.edu	37	12	10560375	10560375	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013431.2	-1	reviewed	p.G118	0.000	423	0%	196	38.8%	-	-	-	-	-	NULL
ENSG00000180574	0	genome.wustl.edu	37	12	10658725	10658725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322446	+1	known	p.R75I	1.000	249	0%	161	37.9%	-	-	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
TAS2R7	50837	genome.wustl.edu	37	12	10954545	10954545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023919.2	-1	reviewed	p.R209W	0.797	483	0%	275	15.3%	-	-	benign(0)	tolerated(1)	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R8	50836	genome.wustl.edu	37	12	10958828	10958828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023918.1	-1	reviewed	p.S251Y	0.000	156	0%	76	39.5%	-	-	benign(0.002)	tolerated(0.37)	neutral(0.019)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R10	50839	genome.wustl.edu	37	12	10978314	10978314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023921.1	-1	reviewed	p.F185L	0.000	64	0%	37	43.2%	-	-	benign(0)	tolerated(1)	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R20	259295	genome.wustl.edu	37	12	11149732	11149732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176889.2	-1	validated	p.S248L	0.000	494	0%	205	33.7%	-	-	benign(0.353)	deleterious(0.03)	deleterious(0.476)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R42	353164	genome.wustl.edu	37	12	11338745	11338745	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181429.1	-1	provisional	p.K267*	0.000	172	0%	92	47.8%	-	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R42	353164	genome.wustl.edu	37	12	11339297	11339297	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181429.1	-1	provisional	p.K83Q	0.040	354	0%	181	29.3%	-	-	benign(0.005)	tolerated(0.16)	neutral(0.059)	HMMPfam_TAS2R,superfamily_SSF81321
PRB3	5544	genome.wustl.edu	37	12	11420414	11420414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381842	-1	known	p.S215P	0.008	296	0%	128	28.1%	-	-	unknown(0)	tolerated(0.32)	-	NULL
PRB3	5544	genome.wustl.edu	37	12	11420540	11420540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000279573	-1	known	p.S215P	0.000	302	0.3%	130	10.8%	-	-	unknown(0)	tolerated(0.23)	-	NULL
LRP6	4040	genome.wustl.edu	37	12	12311897	12311897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002336.2	-1	reviewed	p.R886Q	1.000	232	0%	133	40.6%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	superfamily_YWTD domain
LRP6	4040	genome.wustl.edu	37	12	12397550	12397550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002336.2	-1	reviewed	p.R32Q	1.000	310	0%	191	24.1%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	superfamily_YWTD domain
MANSC1	54682	genome.wustl.edu	37	12	12496240	12496240	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018050.2	-1	validated	p.F3	0.000	159	0%	118	17.8%	-	-	-	-	-	NULL
GPR19	2842	genome.wustl.edu	37	12	12814356	12814356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006143.2	-1	validated	p.E343K	1.000	449	0%	293	31.7%	-	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	superfamily_Family A G protein-coupled receptor-like
CDKN1B	1027	genome.wustl.edu	37	12	12870903	12870903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004064.3	+1	reviewed	p.D44N	1.000	140	0%	68	25%	-	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_CDI
APOLD1	81575	genome.wustl.edu	37	12	12940355	12940355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130415.1	+1	validated	p.F203L	1.000	99	0%	86	32.6%	-	-	possibly_damaging(0.636)	tolerated(0.47)	neutral(0.234)	NULL
GPRC5A	9052	genome.wustl.edu	37	12	13061780	13061780	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003979.3	+1	reviewed	p.F199	0.999	530	0%	392	41.1%	-	-	-	-	-	HMMPfam_7tm_3
HEBP1	50865	genome.wustl.edu	37	12	13140127	13140127	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015987.3	-1	reviewed	p.S119	0.730	360	0%	195	30.3%	-	-	-	-	-	HMMPfam_SOUL
ENSG00000183935	0	genome.wustl.edu	37	12	13154964	13154964	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331998	+1	known	p.I472	1.000	26	0%	22	22.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000183935	0	genome.wustl.edu	37	12	13155150	13155150	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331998	+1	known	p.T534	1.000	49	0%	19	42.1%	-	-	-	-	-	HMMPfam_7tm_1
KIAA1467	57613	genome.wustl.edu	37	12	13215874	13215874	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020853.1	+1	validated	p.R273*	0.012	714	0%	338	25.4%	-	-	-	-	-	NULL
KIAA1467	57613	genome.wustl.edu	37	12	13219603	13219603	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020853.1	+1	validated	p.G294	1.000	483	0%	293	27%	-	-	-	-	-	NULL
GRIN2B	2904	genome.wustl.edu	37	12	13715790	13715790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.N1461S	1.000	315	0%	111	32.4%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_NMDAR2_C
GRIN2B	2904	genome.wustl.edu	37	12	13906832	13906832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.F143L	1.000	110	0%	62	35.5%	-	-	probably_damaging(0.994)	tolerated(0.23)	deleterious(0.493)	superfamily_SSF53822
GRIN2B	2904	genome.wustl.edu	37	12	14019050	14019050	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.S31	0.994	90	0%	74	37.8%	-	-	-	-	-	superfamily_SSF53822
ATF7IP	55729	genome.wustl.edu	37	12	14576875	14576875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.K9T	1.000	117	0%	43	14%	-	-	unknown(0)	deleterious(0)	-	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14613981	14613981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.R904Q	0.999	134	0%	88	47.7%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
GUCY2C	2984	genome.wustl.edu	37	12	14769569	14769569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004963.3	-1	validated	p.K990Q	1.000	401	0%	217	40.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
WBP11	51729	genome.wustl.edu	37	12	14943500	14943500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016312.2	-1	reviewed	p.S400Y	1.000	578	0%	306	14.7%	-	-	unknown(0)	deleterious(0.01)	-	NULL
WBP11	51729	genome.wustl.edu	37	12	14947569	14947569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016312.2	-1	reviewed	p.P208L	1.000	117	0%	47	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ART4	420	genome.wustl.edu	37	12	14994061	14994061	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021071.2	-1	reviewed	p.F57	1.000	105	0%	57	45.6%	-	-	-	-	-	HMMPfam_ART,superfamily_ADP-ribosylation
PTPRO	5800	genome.wustl.edu	37	12	15637132	15637132	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030667.1	+1	reviewed	p.V100	0.986	213	0.5%	151	11.9%	-	-	-	-	-	superfamily_Fibronectin type III
EPS8	2059	genome.wustl.edu	37	12	15784375	15784375	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004447.5	-1	reviewed	e17+1	1.000	292	0%	172	29.1%	-	-	-	-	-	-
DERA	51071	genome.wustl.edu	37	12	16109955	16109955	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015954.2	+1	validated	p.K39N	0.985	186	0%	91	41.8%	-	-	possibly_damaging(0.555)	deleterious(0.01)	deleterious(0.595)	superfamily_SSF51569
DERA	51071	genome.wustl.edu	37	12	16135316	16135316	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015954.2	+1	validated	p.E195*	1.000	471	0%	281	32.7%	-	-	-	-	-	HMMPfam_DeoC,superfamily_SSF51569
DERA	51071	genome.wustl.edu	37	12	16185653	16185653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437671	+1	known	p.S184N	0.994	85	0%	51	33.3%	-	-	-	-	-	NULL
MGST1	4257	genome.wustl.edu	37	12	16510603	16510603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020300.3	+1	reviewed	p.R64Q	0.954	311	0%	119	42%	-	-	benign(0.021)	tolerated(0.16)	neutral(0.060)	HMMPfam_MAPEG
RERGL	79785	genome.wustl.edu	37	12	18234364	18234364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024730.2	-1	provisional	p.L127I	1.000	251	0%	132	24.2%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_SSF52540
RERGL	79785	genome.wustl.edu	37	12	18242180	18242180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024730.2	-1	provisional	p.S13F	0.038	225	0%	132	30.3%	-	-	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	NULL
PLCZ1	89869	genome.wustl.edu	37	12	18836253	18836253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033123.2	-1	provisional	p.R583C	1.000	226	0%	80	33.8%	-	-	possibly_damaging(0.851)	tolerated(0.1)	deleterious(0.613)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PDE3A	5139	genome.wustl.edu	37	12	20803505	20803505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000921.3	+1	validated	p.D966Y	1.000	320	0%	190	30.5%	-	-	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_PDEase_I,superfamily_SSF109604
PDE3A	5139	genome.wustl.edu	37	12	20833078	20833078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000921.3	+1	validated	p.E1100G	0.407	190	0%	76	31.6%	-	-	probably_damaging(0.991)	tolerated(0.17)	deleterious(0.503)	NULL
SLCO1B3	28234	genome.wustl.edu	37	12	21011428	21011428	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019844.2	+1	validated	p.P94	0.870	855	0%	381	34.4%	-	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1B3	28234	genome.wustl.edu	37	12	21028196	21028196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019844.2	+1	validated	p.S252F	0.969	934	0%	386	33.4%	-	-	possibly_damaging(0.824)	deleterious(0.04)	deleterious(0.661)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
RECQL	5965	genome.wustl.edu	37	12	21643313	21643313	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002907.3	-1	reviewed	e3-1	1.000	126	0%	91	33%	-	-	-	-	-	-
GYS2	2998	genome.wustl.edu	37	12	21713419	21713419	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021957.3	-1	reviewed	p.K357T	0.977	321	0%	159	42.1%	-	-	benign(0.26)	tolerated(0.09)	neutral(0.324)	HMMPfam_Glycogen_syn
CMAS	55907	genome.wustl.edu	37	12	22199422	22199422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018686.3	+1	reviewed	p.N62S	1.000	43	0%	29	34.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_transf_3,superfamily_Nucleotide-diphospho-sugar transferases
KIAA0528	9847	genome.wustl.edu	37	12	22676481	22676481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	p.D227N	1.000	211	0%	153	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOX5	6660	genome.wustl.edu	37	12	23728616	23728616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006940.4	-1	reviewed	p.S441P	1.000	529	0%	243	42%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
BCAT1	586	genome.wustl.edu	37	12	24989525	24989525	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005504.6	-1	reviewed	p.E275*	1.000	218	0%	98	40.8%	-	-	-	-	-	HMMPfam_Aminotran_4,superfamily_Aminotrans_IV,PatternScan_AA_TRANSFER_CLASS_4
CASC1	55259	genome.wustl.edu	37	12	25307254	25307254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018272.3	-1	validated	p.N146T	0.019	428	0%	237	45.1%	-	-	benign(0.068)	tolerated(0.15)	neutral(0.245)	NULL
LYRM5	144363	genome.wustl.edu	37	12	25357215	25357215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001660.2	+1	validated	p.R81H	1.000	61	0%	38	31.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IFLTD1	160492	genome.wustl.edu	37	12	25679104	25679104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145728.1	-1	validated	p.L243I	1.000	276	0%	141	31.2%	-	-	possibly_damaging(0.811)	tolerated(0.19)	neutral(0.355)	HMMPfam_IF_tail,superfamily_Lamin A/C globular tail domain
SSPN	8082	genome.wustl.edu	37	12	26383985	26383985	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005086.4	+1	reviewed	p.S236	0.001	163	0%	66	42.4%	-	-	-	-	-	NULL
ASUN	55726	genome.wustl.edu	37	12	27067449	27067449	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018164.2	-1	validated	p.I437	0.997	356	0%	171	38.6%	-	-	-	-	-	HMMPfam_DUF2151
FGFR1OP2	26127	genome.wustl.edu	37	12	27110533	27110533	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015633.2	+1	validated	e3-1	1.000	162	1.2%	73	47.9%	-	-	-	-	-	-
C12orf70	341346	genome.wustl.edu	37	12	27627804	27627804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145010.1	+1	validated	p.A107V	0.000	248	0%	129	45.7%	-	-	benign(0.355)	tolerated(0.34)	neutral(0.136)	NULL
C12orf70	341346	genome.wustl.edu	37	12	27628626	27628626	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145010.1	+1	validated	p.I158	0.156	125	0%	48	12.5%	-	-	-	-	-	NULL
MRPS35	60488	genome.wustl.edu	37	12	27908273	27908273	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021821.2	+1	reviewed	p.E288*	1.000	110	0%	39	35.9%	-	-	-	-	-	NULL
FAR2	55711	genome.wustl.edu	37	12	29474805	29474805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018099.3	+1	provisional	p.S402I	1.000	277	0%	146	32.9%	-	-	benign(0.221)	tolerated(0.24)	neutral(0.059)	HMMPfam_Sterile
OVCH1	341350	genome.wustl.edu	37	12	29597100	29597100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.N999H	0.001	197	0%	153	36.6%	-	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	superfamily_Spermadhesin CUB domain
OVCH1	341350	genome.wustl.edu	37	12	29614804	29614804	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.E755*	0.010	244	0%	164	31.7%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
OVCH1	341350	genome.wustl.edu	37	12	29648326	29648326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.E116K	0.202	347	0%	192	34.4%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TMTC1	83857	genome.wustl.edu	37	12	29920950	29920950	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175861.2	-1	provisional	p.L13V	0.002	213	0%	88	38.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IPO8	10526	genome.wustl.edu	37	12	30819186	30819186	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006390.2	-1	reviewed	e11-1	1.000	173	0%	84	13.1%	-	-	-	-	-	-
CAPRIN2	65981	genome.wustl.edu	37	12	30862866	30862866	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002259.1	-1	validated	p.T1118	0.014	160	0%	97	34%	-	-	-	-	-	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
CAPRIN2	65981	genome.wustl.edu	37	12	30863357	30863357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002259.1	-1	validated	p.E955K	0.996	100	0%	55	41.8%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
DDX11	1663	genome.wustl.edu	37	12	31249577	31249577	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152438.1	+1	reviewed	p.G510*	1.000	344	0%	233	32.2%	-	-	-	-	-	NULL
AMN1	196394	genome.wustl.edu	37	12	31882040	31882040	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_004854.1	-1	validated	NULL	0.001	16	0%	12	33.3%	-	-	-	-	-	-
H3F3C	440093	genome.wustl.edu	37	12	31944947	31944947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013699.2	-1	validated	p.R52C	1.000	135	0%	131	32.8%	-	-	probably_damaging(1)	-	-	HMMSmart_H3,superfamily_Histone-fold
BICD1	636	genome.wustl.edu	37	12	32369267	32369267	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001714.2	+1	reviewed	p.S100	0.000	238	0%	156	34.6%	-	-	-	-	-	HMMPfam_BicD
BICD1	636	genome.wustl.edu	37	12	32458911	32458911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001714.2	+1	reviewed	p.G287V	1.000	237	0%	121	38.8%	-	-	benign(0.333)	deleterious(0.04)	neutral(0.453)	HMMPfam_BicD
ALG10B	144245	genome.wustl.edu	37	12	38714532	38714532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013620.3	+1	validated	p.K313N	0.000	637	0%	275	29.5%	-	-	benign(0.012)	tolerated(0.47)	neutral(0.011)	HMMPfam_DIE2_ALG10
C12orf40	283461	genome.wustl.edu	37	12	40041724	40041724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031748.2	+1	validated	p.S172Y	0.001	232	0%	141	34.8%	-	-	benign(0.029)	-	-	NULL
SLC2A13	114134	genome.wustl.edu	37	12	40158368	40158368	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052885.3	-1	validated	p.L538	0.986	247	0%	121	42.1%	-	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
LRRK2	120892	genome.wustl.edu	37	12	40631800	40631800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.E156*	1.000	248	0%	112	31.2%	-	-	-	-	-	superfamily_ARM-type_fold
LRRK2	120892	genome.wustl.edu	37	12	40631804	40631804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.S157I	0.547	256	0%	116	33.6%	-	-	benign(0.086)	tolerated(0.14)	neutral(0.256)	superfamily_ARM-type_fold
LRRK2	120892	genome.wustl.edu	37	12	40643716	40643716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.Q309H	0.176	203	0%	97	39.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM-type_fold
LRRK2	120892	genome.wustl.edu	37	12	40677790	40677790	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.Q785	0.152	335	0%	144	33.3%	-	-	-	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40704416	40704416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.R1501W	1.000	286	0%	148	35.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
LRRK2	120892	genome.wustl.edu	37	12	40716969	40716969	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.L1839	0.390	173	0%	72	40.3%	-	-	-	-	-	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41961623	41961623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013377.3	+1	validated	p.F244L	1.000	180	0%	79	31.6%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41966788	41966788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013377.3	+1	validated	p.S478Y	1.000	131	0%	60	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41966998	41966998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013377.3	+1	validated	p.S548I	0.028	230	0%	91	11%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
ADAMTS20	80070	genome.wustl.edu	37	12	43771354	43771354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.N1603K	0.995	273	0%	175	26.9%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	superfamily_TSP-1 type 1 repeat
ADAMTS20	80070	genome.wustl.edu	37	12	43819315	43819315	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	e28+2	1.000	257	0%	181	37%	-	-	-	-	-	-
ADAMTS20	80070	genome.wustl.edu	37	12	43822567	43822567	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.R1175	0.931	169	0%	70	35.7%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
IRAK4	51135	genome.wustl.edu	37	12	44176249	44176249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114182.2	+1	reviewed	p.R361C	0.843	210	0%	102	31.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TMEM117	84216	genome.wustl.edu	37	12	44781912	44781912	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032256.1	+1	provisional	p.I334	0.570	179	0.6%	85	24.7%	-	-	-	-	-	NULL
DBX2	440097	genome.wustl.edu	37	12	45444588	45444588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004329.2	-1	validated	p.E41D	1.000	5	0.000	7	0.571	-	-	benign(0.245)	deleterious(0.01)	neutral(0.431)	NULL
PLEKHA8P1	51054	genome.wustl.edu	37	12	45567149	45567149	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015899.1	-1	provisional	p.R334*	1.000	251	0%	159	36.5%	-	-	-	-	-	HMMPfam_GLTP,superfamily_Glycolipid_transfer_prot
PLEKHA8P1	51054	genome.wustl.edu	37	12	45568001	45568001	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015899.1	-1	provisional	p.L50V	1.000	538	0%	285	37.2%	-	-	-	-	-	NULL
ANO6	196527	genome.wustl.edu	37	12	45796955	45796955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142679.1	+1	validated	p.F571L	1.000	377	0%	170	33.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46325298	46325298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.E278K	1.000	113	0%	43	34.9%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46327011	46327011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.E213*	1.000	190	0%	135	40.7%	-	-	-	-	-	NULL
SLC38A2	54407	genome.wustl.edu	37	12	46760898	46760898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018976.4	-1	validated	p.L148F	1.000	306	0%	183	33.3%	-	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_Aa_trans
SLC38A4	55089	genome.wustl.edu	37	12	47163108	47163108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143824.1	-1	validated	p.V468A	1.000	230	0%	116	29.3%	-	-	possibly_damaging(0.935)	tolerated(0.26)	neutral(0.414)	HMMPfam_Aa_trans
SLC38A4	55089	genome.wustl.edu	37	12	47178414	47178414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143824.1	-1	validated	p.S135Y	1.000	204	0%	126	37.3%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_Aa_trans
RPAP3	79657	genome.wustl.edu	37	12	48082961	48082961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024604.2	-1	reviewed	p.E229K	1.000	416	0%	150	34.7%	-	-	benign(0.171)	tolerated(0.47)	neutral(0.026)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
RAPGEF3	10411	genome.wustl.edu	37	12	48141909	48141909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098531.2	-1	validated	p.T424S	1.000	254	0%	145	11.7%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
HDAC7	51564	genome.wustl.edu	37	12	48183607	48183607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015401.3	-1	reviewed	p.R694C	0.996	152	0%	88	12.5%	-	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
COL2A1	1280	genome.wustl.edu	37	12	48383034	48383034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001844.4	-1	reviewed	p.F367V	1.000	260	0%	117	33.3%	-	-	unknown(0)	deleterious(0.04)	-	HMMPfam_Collagen
PFKM	5213	genome.wustl.edu	37	12	48536608	48536608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000289.5	+1	reviewed	p.R566Q	0.990	270	0%	139	23.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PFK,superfamily_Phosphofructokinase
KANSL2	54934	genome.wustl.edu	37	12	49048753	49048753	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017822.3	-1	validated	p.E440*	1.000	422	0%	144	36.1%	-	-	-	-	-	NULL
ADCY6	112	genome.wustl.edu	37	12	49170270	49170270	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015270.3	-1	reviewed	p.F492	0.958	52	0%	46	26.1%	-	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1
ADCY6	112	genome.wustl.edu	37	12	49171425	49171425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015270.3	-1	reviewed	p.I370T	1.000	789	0%	482	36.3%	-	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
DDX23	9416	genome.wustl.edu	37	12	49224335	49224335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004818.2	-1	reviewed	p.E794K	1.000	335	0%	182	14.3%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
DDX23	9416	genome.wustl.edu	37	12	49227275	49227275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004818.2	-1	reviewed	p.I530L	1.000	191	0%	111	34.2%	-	-	benign(0.005)	tolerated(0.61)	neutral(0.004)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLL2	8085	genome.wustl.edu	37	12	49432095	49432095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.G3015D	1.000	425	0%	245	41.2%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49433373	49433373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.R2692W	1.000	62	0%	39	23.1%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49438225	49438225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.E1682K	0.996	301	0%	172	38.4%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49444093	49444093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.P1093L	0.996	149	0%	102	25.5%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49449074	49449074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.D12Y	1.000	165	0%	114	36%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DHH	50846	genome.wustl.edu	37	12	49485129	49485129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021044.2	-1	reviewed	p.N116S	1.000	104	0%	87	42.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HH_signal,superfamily_Hedgehog_sig_N
TUBA1C	84790	genome.wustl.edu	37	12	49663751	49663751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032704.3	+1	provisional	p.R123C	1.000	387	0.3%	221	35.7%	-	-	probably_damaging(0.961)	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
SPATS2	65244	genome.wustl.edu	37	12	49883290	49883290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023071.3	+1	validated	p.E50*	1.000	372	0%	166	23.5%	-	-	-	-	-	NULL
LOC100131403	100131403	genome.wustl.edu	37	12	50348042	50348042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718330.1	-1	model	p.L26F	0.996	89	0%	54	29.6%	-	-	-	-	-	NULL
RACGAP1	29127	genome.wustl.edu	37	12	50384112	50384112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126103.1	-1	validated	p.S613N	1.000	207	0%	103	35%	-	-	possibly_damaging(0.638)	deleterious(0.02)	deleterious(0.607)	NULL
RACGAP1	29127	genome.wustl.edu	37	12	50399149	50399149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126103.1	-1	validated	p.E105D	1.000	281	0%	179	31.8%	-	-	benign(0.004)	tolerated(0.46)	neutral(0.012)	NULL
GPD1	2819	genome.wustl.edu	37	12	50498378	50498378	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005276.2	+1	provisional	p.I21	0.930	103	0%	57	33.3%	-	-	unknown(0)	-	-	HMMPfam_NAD_Gly3P_dh_N,superfamily_NAD(P)-bd
MIR1293	100302220	genome.wustl.edu	37	12	50627987	50627987	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408677	-1	known	NULL	0.697	14	0%	13	61.5%	-	-	-	-	-	-
FAM186A	121006	genome.wustl.edu	37	12	50724472	50724472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145475.1	-1	provisional	p.E2306D	0.999	252	0%	127	36.2%	-	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
LARP4	113251	genome.wustl.edu	37	12	50860808	50860808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199188.2	+1	validated	p.F490V	1.000	379	0%	237	40.5%	-	-	benign(0.009)	deleterious(0.03)	neutral(0.365)	NULL
ATF1	466	genome.wustl.edu	37	12	51207802	51207802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005171.3	+1	validated	p.A113V	1.000	131	0%	85	12.9%	-	-	possibly_damaging(0.903)	tolerated(0.51)	neutral(0.367)	NULL
TMPRSS12	283471	genome.wustl.edu	37	12	51237779	51237779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182559.2	+1	validated	p.E114D	0.012	160	0%	96	33.3%	-	-	benign(0.002)	tolerated(0.65)	neutral(0.003)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CSRNP2	81566	genome.wustl.edu	37	12	51457919	51457919	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030809.1	-1	provisional	p.S414	0.994	185	0%	100	26%	-	-	-	-	-	NULL
BIN2	51411	genome.wustl.edu	37	12	51685725	51685725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016293.2	-1	validated	p.L389I	0.992	245	0%	126	40.5%	-	-	possibly_damaging(0.942)	tolerated(0.18)	neutral(0.443)	NULL
SCN8A	6334	genome.wustl.edu	37	12	52096657	52096657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.R365C	1.000	361	0%	171	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52156455	52156455	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.R847	1.000	247	0%	119	31.1%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GRASP	160622	genome.wustl.edu	37	12	52407689	52407689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181711.2	+1	provisional	p.R193W	0.994	260	0%	148	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PDZ domain-like
NR4A1	3164	genome.wustl.edu	37	12	52452704	52452704	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002135.3	+1	reviewed	p.I591	1.000	163	0%	100	37%	-	-	-	-	-	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
KRT7	3855	genome.wustl.edu	37	12	52635421	52635421	+	Splice_Site	SNP	G	G	A	rs112832797	byCluster	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005556.3	+1	reviewed	e5+1	1.000	174	0%	83	34.9%	-	-	-	-	-	-
KRT85	3891	genome.wustl.edu	37	12	52756073	52756073	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.I420	1.000	182	0%	111	29.7%	-	-	-	-	-	HMMPfam_Filament,PatternScan_IF
KRT85	3891	genome.wustl.edu	37	12	52756744	52756744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.T324M	0.996	300	0%	213	32.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Filament
KRT85	3891	genome.wustl.edu	37	12	52761037	52761037	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.F51	0.178	64	0%	71	21.1%	-	-	-	-	-	NULL
KRT84	3890	genome.wustl.edu	37	12	52773690	52773690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033045.3	-1	reviewed	p.L476F	1.000	338	0%	150	34.7%	-	-	possibly_damaging(0.583)	deleterious(0.03)	deleterious(0.565)	NULL
KRT5	3852	genome.wustl.edu	37	12	52909583	52909583	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000424.3	-1	reviewed	p.I491	1.000	458	0.2%	234	29.9%	-	-	-	-	-	NULL
KRT71	112802	genome.wustl.edu	37	12	52940108	52940108	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033448.2	-1	reviewed	p.I429	0.997	143	0%	92	35.9%	-	-	-	-	-	HMMPfam_Filament,PatternScan_IF
KRT2	3849	genome.wustl.edu	37	12	53041603	53041603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000423.2	-1	reviewed	p.D387N	0.870	149	0%	108	32.4%	-	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_Filament
KRT1	3848	genome.wustl.edu	37	12	53070211	53070211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006121.3	-1	reviewed	p.K441N	0.940	212	0%	167	31.7%	-	-	possibly_damaging(0.937)	tolerated(0.06)	deleterious(0.706)	superfamily_Prefoldin,HMMPfam_Filament
KRT1	3848	genome.wustl.edu	37	12	53072477	53072477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006121.3	-1	reviewed	p.D219Y	0.027	170	0%	104	31.7%	-	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_Filament
KRT77	374454	genome.wustl.edu	37	12	53086543	53086543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175078.2	-1	reviewed	p.K401T	1.000	289	0%	213	44.6%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_Filament
KRT76	51350	genome.wustl.edu	37	12	53167369	53167369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015848.4	-1	reviewed	p.K291N	1.000	269	0%	146	26%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Filament
KRT4	3851	genome.wustl.edu	37	12	53207694	53207694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002272.2	-1	reviewed	p.R124K	0.997	106	0%	74	32.4%	-	-	-	-	-	NULL
KRT79	338785	genome.wustl.edu	37	12	53223837	53223837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175834.2	-1	reviewed	p.E275D	1.000	228	0%	174	36.8%	-	-	possibly_damaging(0.823)	tolerated(0.09)	deleterious(0.608)	superfamily_Prefoldin,HMMPfam_Filament
EIF4B	1975	genome.wustl.edu	37	12	53421850	53421850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001417.4	+1	validated	p.R286H	1.000	343	0%	199	37.2%	-	-	unknown(0)	deleterious(0.03)	-	NULL
SP7	121340	genome.wustl.edu	37	12	53722254	53722254	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152860.1	-1	provisional	p.F324	0.999	59	0%	64	15.6%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SP1	6667	genome.wustl.edu	37	12	53776146	53776146	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138473.2	+1	validated	p.N139H	1.000	107	0%	96	35.4%	-	-	possibly_damaging(0.652)	tolerated(0.27)	neutral(0.263)	NULL
SP1	6667	genome.wustl.edu	37	12	53776175	53776175	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138473.2	+1	validated	p.V148	0.998	92	0%	89	34.8%	-	-	-	-	-	NULL
TARBP2	6895	genome.wustl.edu	37	12	53898976	53898976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134323.1	+1	reviewed	p.R224Q	0.998	109	0%	105	43.8%	-	-	possibly_damaging(0.597)	tolerated(0.12)	neutral(0.467)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
NPFF	8620	genome.wustl.edu	37	12	53900606	53900606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003717.2	-1	reviewed	p.S99F	0.811	135	0%	91	30.8%	-	-	probably_damaging(0.961)	tolerated(0.09)	deleterious(0.701)	NULL
HOXC10	3226	genome.wustl.edu	37	12	54379403	54379403	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017409.3	+1	reviewed	p.A120	0.997	37	0%	42	28.6%	-	-	-	-	-	NULL
HOXC10	3226	genome.wustl.edu	37	12	54379553	54379553	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017409.3	+1	reviewed	p.F170	0.999	41	0%	34	35.3%	-	-	-	-	-	NULL
HOXC8	3224	genome.wustl.edu	37	12	54403332	54403332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022658.3	+1	reviewed	p.F88L	1.000	59	0%	48	35.4%	-	-	probably_damaging(0.975)	tolerated(0.1)	deleterious(0.704)	NULL
HOXC4	3221	genome.wustl.edu	37	12	54448973	54448973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014620.4	+1	reviewed	p.D260G	1.000	20	0.000	9	0.667	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
ZNF385A	25946	genome.wustl.edu	37	12	54765316	54765316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130967.1	-1	validated	p.Y202C	1.000	102	0%	70	41.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00451,HMMSmart_SM00355
ITGA5	3678	genome.wustl.edu	37	12	54797093	54797093	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002205.2	-1	reviewed	p.R598*	1.000	331	0%	198	38.4%	-	-	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
NCKAP1L	3071	genome.wustl.edu	37	12	54902172	54902172	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005337.4	+1	reviewed	e5-1	1.000	335	0%	225	34.7%	-	-	-	-	-	-
NCKAP1L	3071	genome.wustl.edu	37	12	54910034	54910034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005337.4	+1	reviewed	p.R318K	1.000	517	0%	282	32.3%	-	-	benign(0.03)	tolerated(0.08)	neutral(0.301)	HMMPfam_Nckap1
MUCL1	118430	genome.wustl.edu	37	12	55248901	55248901	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058173.2	+1	validated	p.Q20	0.110	303	0%	193	33.7%	-	-	-	-	-	NULL
OR6C74	254783	genome.wustl.edu	37	12	55642003	55642003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005490.1	+1	provisional	p.M311T	0.000	22	0%	11	54.5%	-	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
OR6C6	283365	genome.wustl.edu	37	12	55688777	55688777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005493.1	-1	provisional	p.L80F	0.010	133	0%	69	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C76	390326	genome.wustl.edu	37	12	55820229	55820229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005183.1	+1	provisional	p.F64L	0.190	378	0%	199	29.6%	-	-	probably_damaging(0.991)	tolerated(0.4)	neutral(0.460)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C2	341416	genome.wustl.edu	37	12	55846214	55846214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054105.1	+1	provisional	p.T73A	0.139	180	0%	119	34.5%	-	-	benign(0.039)	deleterious(0.02)	neutral(0.385)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C70	390327	genome.wustl.edu	37	12	55863598	55863598	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005499.1	-1	provisional	p.E109*	0.515	150	0%	67	31.3%	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR6C68	403284	genome.wustl.edu	37	12	55886659	55886659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005519.1	+1	provisional	p.F171L	0.992	350	0%	241	34.4%	-	-	benign(0.402)	deleterious(0)	deleterious(0.574)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2AP1	121129	genome.wustl.edu	37	12	55968838	55968838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000321688	+1	known	p.L214F	0.000	29	0%	26	53.8%	-	-	benign(0.008)	tolerated(0.23)	neutral(0.042)	HMMPfam_7tm_1,superfamily_SSF81321
METTL7B	196410	genome.wustl.edu	37	12	56077672	56077672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152637.2	+1	validated	p.E192K	0.797	195	0%	135	11.9%	-	-	benign(0.221)	tolerated(0.14)	neutral(0.272)	superfamily_SSF53335
ITGA7	3679	genome.wustl.edu	37	12	56082082	56082082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144996.1	-1	reviewed	p.E991D	0.994	253	0%	164	34.1%	-	-	benign(0.152)	tolerated(0.89)	neutral(0.013)	superfamily_Integrin domains
GDF11	10220	genome.wustl.edu	37	12	56142696	56142696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005811.3	+1	reviewed	p.E258K	1.000	40	0%	36	30.6%	-	-	benign(0.005)	tolerated(0.07)	neutral(0.319)	NULL
DNAJC14	85406	genome.wustl.edu	37	12	56217237	56217237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032364.5	-1	validated	p.R488Q	1.000	298	0%	155	26.5%	-	-	probably_damaging(0.998)	tolerated(0.99)	deleterious(0.474)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
PMEL	6490	genome.wustl.edu	37	12	56352291	56352291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006928.3	-1	validated	p.Q145H	0.986	93	0%	67	23.9%	-	-	unknown(0)	deleterious(0.01)	-	NULL
IKZF4	64375	genome.wustl.edu	37	12	56429071	56429071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022465.3	+1	validated	p.E572K	1.000	143	0%	101	33.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00355
ERBB3	2065	genome.wustl.edu	37	12	56487629	56487629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.R521Q	1.000	112	0%	74	31.1%	-	-	probably_damaging(0.991)	tolerated(0.15)	deleterious(0.685)	HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain
SLC39A5	283375	genome.wustl.edu	37	12	56625278	56625278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135195.1	+1	validated	p.R74C	0.865	71	0%	61	47.5%	-	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
CS	1431	genome.wustl.edu	37	12	56669802	56669802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004077.2	-1	reviewed	p.R256C	1.000	243	0.4%	220	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Citrate_synt,superfamily_Citrate_synthase_core
PAN2	9924	genome.wustl.edu	37	12	56719148	56719148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127460.2	-1	reviewed	p.L484I	1.000	217	0%	119	36.1%	-	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
APOF	319	genome.wustl.edu	37	12	56755608	56755608	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001638.2	-1	reviewed	p.R128*	0.975	221	0%	167	43.7%	-	-	-	-	-	NULL
TIMELESS	8914	genome.wustl.edu	37	12	56817453	56817453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003920.3	-1	validated	p.E669*	1.000	239	0%	155	36.8%	-	-	-	-	-	NULL
MIP	4284	genome.wustl.edu	37	12	56846887	56846887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012064.3	-1	reviewed	p.A192V	1.000	168	0%	101	36.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MIP,superfamily_MIP
MIP	4284	genome.wustl.edu	37	12	56848272	56848272	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012064.3	-1	reviewed	p.L42	1.000	82	0%	59	28.8%	-	-	-	-	-	HMMPfam_MIP,superfamily_MIP
MIP	4284	genome.wustl.edu	37	12	56848347	56848347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012064.3	-1	reviewed	p.F17L	1.000	129	0%	97	34%	-	-	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	HMMPfam_MIP,superfamily_MIP
BAZ2A	11176	genome.wustl.edu	37	12	56992656	56992656	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013449.3	-1	validated	p.G1850*	1.000	92	0%	81	12.3%	-	-	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
NACA	4666	genome.wustl.edu	37	12	57106577	57106577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.A2072V	1.000	437	0%	237	37.6%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_UBA
NACA	4666	genome.wustl.edu	37	12	57106631	57106631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.S2054L	1.000	402	0%	238	38.7%	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_UBA
NACA	4666	genome.wustl.edu	37	12	57108169	57108169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.R1934W	1.000	735	0%	394	31.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NAC
NACA	4666	genome.wustl.edu	37	12	57114544	57114544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.S257Y	0.951	252	0%	146	26%	-	-	unknown(0)	deleterious(0)	-	NULL
NACA	4666	genome.wustl.edu	37	12	57114659	57114659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.P219S	0.394	330	0%	194	35.6%	-	-	unknown(0)	deleterious(0)	-	NULL
ZBTB39	9880	genome.wustl.edu	37	12	57396823	57396823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014830.1	-1	provisional	p.H627Y	1.000	68	0%	60	38.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB39	9880	genome.wustl.edu	37	12	57397402	57397402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014830.1	-1	provisional	p.D434N	0.607	94	0%	58	22.4%	-	-	benign(0.005)	tolerated(0.2)	neutral(0.049)	NULL
ZBTB39	9880	genome.wustl.edu	37	12	57398419	57398419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014830.1	-1	provisional	p.D95Y	1.000	82	0%	73	45.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
TAC3	6866	genome.wustl.edu	37	12	57407147	57407147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013251.3	-1	reviewed	p.E78D	0.997	380	0%	187	38.5%	-	-	benign(0.429)	deleterious(0.04)	deleterious(0.488)	NULL
MYO1A	4640	genome.wustl.edu	37	12	57430619	57430619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005379.2	-1	reviewed	p.K737N	1.000	593	0%	380	34.2%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMSmart_IQ,superfamily_SSF52540
MYO1A	4640	genome.wustl.edu	37	12	57437068	57437068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005379.2	-1	reviewed	p.E323K	1.000	617	0%	338	35.8%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO1A	4640	genome.wustl.edu	37	12	57442128	57442128	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005379.2	-1	reviewed	e1-1	0.940	68	0%	48	25%	-	-	-	-	-	-
NXPH4	11247	genome.wustl.edu	37	12	57619291	57619291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007224.3	+1	validated	p.A230T	1.000	16	0%	20	45%	-	-	benign(0.021)	tolerated(1)	neutral(0.001)	HMMPfam_Neurexophilin
SHMT2	6472	genome.wustl.edu	37	12	57626616	57626616	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005412.5	+1	reviewed	p.R283*	0.997	67	0%	41	31.7%	-	-	-	-	-	HMMPfam_SHMT,superfamily_PyrdxlP-dep_Trfase_major,PatternScan_SHMT
NDUFA4L2	56901	genome.wustl.edu	37	12	57630449	57630449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020142.3	-1	provisional	p.G25S	0.302	45	0%	27	33.3%	-	-	possibly_damaging(0.49)	deleterious(0.01)	deleterious(0.569)	HMMPfam_NADH_ub_rd_NUML
STAC3	246329	genome.wustl.edu	37	12	57642566	57642566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145064.1	-1	provisional	p.R119C	1.000	427	0%	266	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
INHBE	83729	genome.wustl.edu	37	12	57850327	57850327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031479.3	+1	validated	p.R250Q	1.000	135	0%	107	37.4%	-	-	possibly_damaging(0.458)	tolerated(1)	neutral(0.150)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
GLI1	2735	genome.wustl.edu	37	12	57858597	57858597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005269.2	+1	reviewed	p.S112L	1.000	217	0%	133	14.3%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ARHGAP9	64333	genome.wustl.edu	37	12	57869326	57869326	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032496.2	-1	reviewed	p.E462*	0.888	29	0%	25	20%	-	-	-	-	-	NULL
ARHGAP9	64333	genome.wustl.edu	37	12	57872483	57872483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032496.2	-1	reviewed	p.A125V	0.012	104	0%	63	34.9%	-	-	benign(0.23)	tolerated(0.11)	neutral(0.295)	NULL
ARHGAP9	64333	genome.wustl.edu	37	12	57873027	57873027	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032496.2	-1	reviewed	p.R55*	1.000	248	0%	122	41.8%	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
MARS	4141	genome.wustl.edu	37	12	57894268	57894268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004990.2	+1	reviewed	p.D419G	1.000	244	0%	160	36.2%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_tRNA-synt_1g,superfamily_SSF52374,superfamily_SSF57770
DCTN2	10540	genome.wustl.edu	37	12	57928097	57928097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006400.3	-1	reviewed	p.D173N	1.000	173	0%	94	30.9%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Dynamitin
KIF5A	3798	genome.wustl.edu	37	12	57969017	57969017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.G623R	0.996	115	0%	86	30.2%	-	-	possibly_damaging(0.908)	tolerated(0.37)	neutral(0.381)	NULL
KIF5A	3798	genome.wustl.edu	37	12	57972039	57972039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.E818K	1.000	85	0%	55	45.5%	-	-	benign(0.103)	tolerated(0.22)	neutral(0.050)	superfamily_Prefoldin
PIP4K2C	79837	genome.wustl.edu	37	12	57994113	57994113	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024779.4	+1	validated	p.E236*	1.000	363	0%	158	41.1%	-	-	-	-	-	HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104
ARHGEF25	115557	genome.wustl.edu	37	12	58007836	58007836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111270.1	+1	validated	p.E236G	1.000	168	0%	141	38.3%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF25	115557	genome.wustl.edu	37	12	58009483	58009483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111270.1	+1	validated	p.K448N	1.000	397	0%	158	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PH domain-like
B4GALNT1	2583	genome.wustl.edu	37	12	58025054	58025054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001478.3	-1	reviewed	p.K104N	0.996	131	0%	98	37.8%	-	-	benign(0.006)	tolerated(0.44)	neutral(0.013)	NULL
AGAP2	116986	genome.wustl.edu	37	12	58126271	58126271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122772.1	-1	validated	p.R570H	0.895	83	0%	52	25%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases
AGAP2	116986	genome.wustl.edu	37	12	58131355	58131355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122772.1	-1	validated	p.K225N	1.000	16	0%	12	50%	-	-	unknown(0)	deleterious(0)	-	NULL
CDK4	1019	genome.wustl.edu	37	12	58145397	58145397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000075.2	-1	reviewed	p.K35R	1.000	179	0%	79	30.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
METTL1	4234	genome.wustl.edu	37	12	58163148	58163148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005371.5	-1	reviewed	p.D205N	0.000	110	0.9%	74	29.7%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_Methyltransf_4,superfamily_SSF53335
TSFM	10102	genome.wustl.edu	37	12	58189990	58189990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005726.5	+1	reviewed	p.R201Q	1.000	96	0%	47	42.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EF_TS,superfamily_Elongation factor Ts (EF-Ts) dimerisation domain
TSFM	10102	genome.wustl.edu	37	12	58190000	58190000	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005726.5	+1	reviewed	p.W204*	1.000	102	0%	58	34.5%	-	-	-	-	-	HMMPfam_EF_TS,superfamily_Elongation factor Ts (EF-Ts) dimerisation domain
AVIL	10677	genome.wustl.edu	37	12	58200177	58200177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006576.3	-1	reviewed	p.R546Q	0.370	327	0%	174	16.1%	-	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
SLC16A7	9194	genome.wustl.edu	37	12	60168877	60168877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004731.3	+1	provisional	p.F267L	1.000	278	0%	161	29.8%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MON2	23041	genome.wustl.edu	37	12	62877993	62877993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	p.R52Q	1.000	117	0%	41	39%	-	-	possibly_damaging(0.602)	tolerated(0.21)	neutral(0.253)	NULL
MON2	23041	genome.wustl.edu	37	12	62926222	62926222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	p.E469*	1.000	202	0%	110	35.5%	-	-	-	-	-	NULL
MON2	23041	genome.wustl.edu	37	12	62943563	62943563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	p.L957F	1.000	338	0%	156	39.1%	-	-	possibly_damaging(0.788)	deleterious(0.03)	deleterious(0.659)	superfamily_ARM-type_fold
PPM1H	57460	genome.wustl.edu	37	12	63042337	63042337	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020700.1	-1	validated	p.R493*	1.000	229	0%	179	48.6%	-	-	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
SRGAP1	57522	genome.wustl.edu	37	12	64485097	64485097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020762.2	+1	validated	p.S493F	1.000	385	0%	191	40.8%	-	-	benign(0.229)	deleterious(0.04)	neutral(0.372)	NULL
C12orf66	144577	genome.wustl.edu	37	12	64609707	64609707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152440.4	-1	validated	p.R91H	1.000	105	0%	59	35.6%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_DUF2003
WIF1	11197	genome.wustl.edu	37	12	65471603	65471603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007191.4	-1	reviewed	p.R107H	1.000	213	0%	141	40.4%	-	-	possibly_damaging(0.492)	deleterious(0.03)	deleterious(0.528)	HMMPfam_WIF,HMMSmart_WIF
WIF1	11197	genome.wustl.edu	37	12	65514322	65514322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007191.4	-1	reviewed	p.I55V	1.000	365	0%	214	32.7%	-	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_WIF,HMMSmart_WIF
TMBIM4	51643	genome.wustl.edu	37	12	66531943	66531943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016056.2	-1	validated	p.F172I	0.997	109	0%	51	39.2%	-	-	benign(0.184)	tolerated(0.11)	neutral(0.289)	HMMPfam_UPF0005
HELB	92797	genome.wustl.edu	37	12	66704100	66704100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033647.2	+1	reviewed	p.M464I	1.000	305	0%	158	34.8%	-	-	possibly_damaging(0.837)	tolerated(0.23)	neutral(0.361)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HELB	92797	genome.wustl.edu	37	12	66731874	66731874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033647.2	+1	reviewed	p.E1086K	0.069	146	0%	61	26.2%	-	-	possibly_damaging(0.715)	deleterious(0.01)	deleterious(0.665)	NULL
DYRK2	8445	genome.wustl.edu	37	12	68051809	68051809	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006482.2	+1	reviewed	p.Y374	0.993	291	0%	156	35.9%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IFNG	3458	genome.wustl.edu	37	12	68551693	68551693	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000619.2	-1	reviewed	p.S122	0.248	359	0%	201	11.4%	-	-	-	-	-	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
MDM1	56890	genome.wustl.edu	37	12	68696574	68696574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017440.4	-1	reviewed	p.D600Y	1.000	257	0%	108	25.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MDM1	56890	genome.wustl.edu	37	12	68709002	68709002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017440.4	-1	reviewed	p.E409K	0.017	264	0%	161	16.8%	-	-	-	-	-	NULL
NUP107	57122	genome.wustl.edu	37	12	69128526	69128526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020401.2	+1	reviewed	p.M767I	1.000	330	0%	134	35.1%	-	-	benign(0.005)	tolerated(0.38)	neutral(0.018)	HMMPfam_Nup84_Nup100
MDM2	4193	genome.wustl.edu	37	12	69210629	69210629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002392.3	+1	reviewed	p.R71Q	0.998	331	0%	199	27.6%	-	-	benign(0.003)	tolerated(1)	-	HMMPfam_SWIB,superfamily_SWIB/MDM2 domain
CPSF6	11052	genome.wustl.edu	37	12	69656191	69656191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007007.2	+1	validated	p.R503Q	1.000	234	0%	112	33.9%	-	-	unknown(0)	deleterious(0.04)	-	NULL
YEATS4	8089	genome.wustl.edu	37	12	69764573	69764573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006530.2	+1	reviewed	p.E141*	1.000	365	0%	179	34.6%	-	-	-	-	-	NULL
CCT2	10576	genome.wustl.edu	37	12	69983347	69983347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006431.2	+1	reviewed	p.D177Y	1.000	334	0%	164	33.5%	-	-	benign(0.209)	deleterious(0)	neutral(0.465)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
BEST3	144453	genome.wustl.edu	37	12	70070999	70070999	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032735.2	-1	validated	p.F225	0.971	165	0%	64	31.2%	-	-	unknown(0)	-	-	HMMPfam_Bestrophin
BEST3	144453	genome.wustl.edu	37	12	70088237	70088237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032735.2	-1	validated	p.L54I	1.000	359	0%	210	36.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Bestrophin
CNOT2	4848	genome.wustl.edu	37	12	70704744	70704744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014515.4	+1	provisional	p.E40K	1.000	262	0%	101	10.9%	-	-	possibly_damaging(0.561)	deleterious(0.04)	deleterious(0.540)	NULL
PTPRB	5787	genome.wustl.edu	37	12	70980815	70980815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.K761N	1.000	204	0%	129	47.3%	-	-	benign(0.248)	tolerated(0.27)	neutral(0.059)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRB	5787	genome.wustl.edu	37	12	71029454	71029454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.K150Q	0.829	246	0%	127	33.1%	-	-	probably_damaging(0.978)	tolerated(0.45)	neutral(0.432)	NULL
PTPRR	5801	genome.wustl.edu	37	12	71139848	71139848	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002849.2	-1	reviewed	p.E253*	1.000	378	0%	187	34.2%	-	-	-	-	-	NULL
LGR5	8549	genome.wustl.edu	37	12	71955587	71955587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003667.2	+1	provisional	p.S271L	0.993	192	0%	92	35.9%	-	-	benign(0.005)	tolerated(0.64)	neutral(0.003)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like
ZFC3H1	196441	genome.wustl.edu	37	12	72029250	72029250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144982.4	-1	validated	p.M737I	1.000	393	0%	212	13.2%	-	-	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72255232	72255232	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407399	+1	known	p.G4*	0.003	415	0%	193	19.7%	-	-	-	-	-	NULL
TRHDE	29953	genome.wustl.edu	37	12	72771853	72771853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013381.2	+1	reviewed	p.E378K	1.000	137	0%	45	46.7%	-	-	benign(0.005)	tolerated(0.91)	-	HMMPfam_Peptidase_M1,superfamily_SSF55486
TRHDE	29953	genome.wustl.edu	37	12	72866922	72866922	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013381.2	+1	reviewed	p.F471V	1.000	821	0%	444	33.6%	-	-	benign(0.271)	tolerated(0.09)	neutral(0.326)	HMMPfam_Peptidase_M1,superfamily_SSF55486
TRHDE	29953	genome.wustl.edu	37	12	72936120	72936120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013381.2	+1	reviewed	p.F546S	1.000	733	0%	277	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF55486
TRHDE	29953	genome.wustl.edu	37	12	73056956	73056956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013381.2	+1	reviewed	p.G1019V	1.000	76	0%	64	37.5%	-	-	benign(0.086)	tolerated(0.26)	neutral(0.041)	NULL
KCNC2	3747	genome.wustl.edu	37	12	75444191	75444191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139137.2	-1	reviewed	p.L532I	0.683	229	0.4%	175	38.9%	-	-	benign(0.008)	tolerated(1)	-	NULL
KCNC2	3747	genome.wustl.edu	37	12	75601463	75601463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139137.2	-1	reviewed	p.E101K	1.000	10	0%	19	42.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
CAPS2	84698	genome.wustl.edu	37	12	75676101	75676101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032606.3	-1	validated	p.K533N	1.000	218	0%	102	33.3%	-	-	possibly_damaging(0.746)	tolerated(0.06)	deleterious(0.597)	superfamily_EF-hand
CAPS2	84698	genome.wustl.edu	37	12	75693617	75693617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032606.3	-1	validated	p.R304H	1.000	158	0%	57	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CAPS2	84698	genome.wustl.edu	37	12	75720286	75720286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032606.3	-1	validated	p.G17E	0.000	232	0%	136	38.2%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
GLIPR1	11010	genome.wustl.edu	37	12	75884218	75884218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456650	+1	known	p.A175V	1.000	313	0%	167	46.7%	-	-	unknown(0)	-	-	NULL
NAP1L1	4673	genome.wustl.edu	37	12	76453579	76453579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004537.4	-1	reviewed	p.S143L	1.000	372	0%	132	34.8%	-	-	benign(0.148)	deleterious(0.05)	neutral(0.358)	HMMPfam_NAP
NAP1L1	4673	genome.wustl.edu	37	12	76453981	76453981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004537.4	-1	reviewed	p.F95L	1.000	510	0%	263	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAP
BBS10	79738	genome.wustl.edu	37	12	76739617	76739617	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024685.3	-1	reviewed	p.N716	0.934	244	0%	156	37.2%	-	-	-	-	-	NULL
OSBPL8	114882	genome.wustl.edu	37	12	76767213	76767213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020841.4	-1	reviewed	p.P610S	1.000	211	0%	70	17.1%	-	-	probably_damaging(0.983)	tolerated(0.07)	deleterious(0.748)	HMMPfam_Oxysterol_BP
OSBPL8	114882	genome.wustl.edu	37	12	76780420	76780420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020841.4	-1	reviewed	p.P458H	1.000	183	0%	59	28.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Oxysterol_BP
ZDHHC17	23390	genome.wustl.edu	37	12	77240413	77240413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015336.2	+1	validated	p.F487L	1.000	898	0%	457	40.5%	-	-	possibly_damaging(0.888)	tolerated(0.24)	neutral(0.385)	HMMPfam_zf-DHHC
ZDHHC17	23390	genome.wustl.edu	37	12	77244667	77244667	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015336.2	+1	validated	p.R601*	1.000	353	0.6%	178	36.5%	-	-	-	-	-	NULL
CSRP2	1466	genome.wustl.edu	37	12	77252795	77252795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001321.1	-1	reviewed	p.K173N	1.000	233	0%	116	35.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
E2F7	144455	genome.wustl.edu	37	12	77444494	77444494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203394.2	-1	validated	p.E134K	1.000	327	0%	212	32.5%	-	-	possibly_damaging(0.445)	deleterious(0.04)	deleterious(0.494)	NULL
NAV3	89795	genome.wustl.edu	37	12	78334098	78334098	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	e2-1	1.000	248	0%	121	30.6%	-	-	-	-	-	-
NAV3	89795	genome.wustl.edu	37	12	78360008	78360008	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	e4-1	1.000	625	0%	263	14.4%	-	-	-	-	-	-
NAV3	89795	genome.wustl.edu	37	12	78513528	78513528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.I1184M	0.973	258	0%	127	31.5%	-	-	benign(0.212)	tolerated(0.07)	neutral(0.340)	NULL
NAV3	89795	genome.wustl.edu	37	12	78583805	78583805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.L2011M	0.925	358	0%	151	41.7%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SYT1	6857	genome.wustl.edu	37	12	79685839	79685839	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135805.1	+1	validated	p.E135*	1.000	539	0%	194	35.1%	-	-	-	-	-	NULL
OTOGL	283310	genome.wustl.edu	37	12	80712401	80712401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.R1142K	0.990	247	0%	93	41.9%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80714249	80714249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.L1189I	1.000	174	0%	121	29.8%	-	-	benign(0.263)	deleterious(0)	deleterious(0.472)	superfamily_AbfB domain (Pfam 05270)
OTOGL	283310	genome.wustl.edu	37	12	80735787	80735787	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.N1601Y	0.989	175	0%	60	11.7%	-	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80750625	80750625	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.E1881*	0.918	245	0%	103	32%	-	-	-	-	-	NULL
OTOGL	283310	genome.wustl.edu	37	12	80752498	80752498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.D1954N	1.000	421	0%	194	35.6%	-	-	probably_damaging(0.995)	tolerated(0.46)	deleterious(0.470)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80761370	80761370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.V2018L	0.991	274	0%	133	32.3%	-	-	possibly_damaging(0.746)	tolerated(1)	neutral(0.274)	NULL
PTPRQ	374462	genome.wustl.edu	37	12	80878279	80878279	+	Missense_Mutation	SNP	G	G	T	rs190098322	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.K418N	1.000	273	0%	86	32.6%	-	-	benign(0.328)	tolerated(0.29)	neutral(0.132)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	80899820	80899820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.E764K	1.000	93	0%	46	50%	-	-	possibly_damaging(0.575)	tolerated(0.39)	neutral(0.213)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	80900405	80900405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.E838A	1.000	299	0%	125	30.4%	-	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	81004290	81004290	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.L1602V	1.000	151	0%	57	31.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MYF5	4617	genome.wustl.edu	37	12	81112702	81112702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005593.2	+1	validated	p.I214V	1.000	236	0%	111	27%	-	-	benign(0.428)	deleterious(0)	deleterious(0.584)	NULL
MYF5	4617	genome.wustl.edu	37	12	81112815	81112815	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005593.2	+1	validated	p.I251	1.000	153	0%	97	27.8%	-	-	-	-	-	NULL
LIN7A	8825	genome.wustl.edu	37	12	81239614	81239614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004664.2	-1	validated	p.K126N	0.999	197	0%	100	36%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PPFIA2	8499	genome.wustl.edu	37	12	81747063	81747063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.S610I	1.000	518	0%	292	32.2%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81777837	81777837	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.E317*	1.000	557	0%	228	36.8%	-	-	-	-	-	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81839385	81839385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.L174I	1.000	332	0%	197	27.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85264428	85264428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182767.4	-1	validated	p.A442T	1.000	127	0%	84	39.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SNF
SLC6A15	55117	genome.wustl.edu	37	12	85279273	85279273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182767.4	-1	validated	p.S172Y	1.000	247	0%	94	16%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_2
TSPAN19	144448	genome.wustl.edu	37	12	85413411	85413411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100917.1	-1	validated	p.Q148H	1.000	236	0%	83	36.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
LRRIQ1	84125	genome.wustl.edu	37	12	85434286	85434286	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.E51*	0.997	168	0%	56	23.2%	-	-	-	-	-	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85441227	85441227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.K219N	0.994	154	0%	57	21.1%	-	-	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85449335	85449335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.R255I	0.214	99	0%	47	23.4%	-	-	possibly_damaging(0.856)	deleterious(0.01)	deleterious(0.736)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85449823	85449823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.D418Y	0.001	121	0%	46	43.5%	-	-	possibly_damaging(0.66)	deleterious(0.05)	deleterious(0.579)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85450583	85450583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.R671I	0.000	129	0%	53	75.5%	-	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85521758	85521758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.E1386K	0.000	249	0%	106	36.8%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRIQ1	84125	genome.wustl.edu	37	12	85531740	85531740	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.F1441Y	1.000	221	0%	99	29.3%	-	-	benign(0.132)	deleterious(0.04)	neutral(0.360)	NULL
ALX1	8092	genome.wustl.edu	37	12	85695213	85695213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006982.2	+1	reviewed	p.K314R	1.000	219	0%	109	37.6%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_OAR
RASSF9	9182	genome.wustl.edu	37	12	86199312	86199312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005447.3	-1	reviewed	p.R159I	1.000	484	0%	244	39.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NTS	4922	genome.wustl.edu	37	12	86272216	86272216	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006183.3	+1	reviewed	p.E77*	1.000	228	0%	110	39.1%	-	-	-	-	-	HMMPfam_Pro-NT_NN
C12orf50	160419	genome.wustl.edu	37	12	88390424	88390424	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152589.1	-1	predicted	e4-1	1.000	400	0%	163	26.4%	-	-	-	-	-	-
CEP290	80184	genome.wustl.edu	37	12	88453782	88453782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.L2180F	1.000	287	0%	135	28.9%	-	-	possibly_damaging(0.911)	deleterious(0.02)	deleterious(0.746)	NULL
ATP2B1	490	genome.wustl.edu	37	12	89996871	89996871	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001682.2	-1	reviewed	p.I1003	1.000	366	0%	179	33.5%	-	-	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
ATP2B1	490	genome.wustl.edu	37	12	90010631	90010631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001682.2	-1	reviewed	p.T672I	1.000	353	0%	228	35.5%	-	-	benign(0.005)	tolerated(0.05)	neutral(0.345)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
LUM	4060	genome.wustl.edu	37	12	91502222	91502222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002345.3	-1	reviewed	p.A179T	1.000	189	0%	133	30.1%	-	-	benign(0)	tolerated(0.99)	-	HMMSmart_SM00369,superfamily_L domain-like
EEA1	8411	genome.wustl.edu	37	12	93172973	93172973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003566.3	-1	validated	p.R1191I	0.458	700	0%	350	36.3%	-	-	benign(0.055)	tolerated(0.1)	neutral(0.290)	NULL
EEA1	8411	genome.wustl.edu	37	12	93213240	93213240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003566.3	-1	validated	p.K524N	1.000	229	0%	97	49.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SOCS2	8835	genome.wustl.edu	37	12	93968645	93968645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003877.3	+1	reviewed	p.R96Q	1.000	203	0%	95	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PLXNC1	10154	genome.wustl.edu	37	12	94575305	94575305	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005761.1	+1	provisional	p.L429	0.495	226	0%	102	32.4%	-	-	-	-	-	superfamily_Sema
PLXNC1	10154	genome.wustl.edu	37	12	94642056	94642056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005761.1	+1	provisional	p.F882L	0.999	80	0%	42	45.2%	-	-	benign(0.044)	tolerated(0.64)	neutral(0.005)	HMMSmart_IPT
PLXNC1	10154	genome.wustl.edu	37	12	94692548	94692548	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005761.1	+1	provisional	p.V1405	0.158	273	0%	155	31.6%	-	-	-	-	-	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
CCDC41	51134	genome.wustl.edu	37	12	94772619	94772619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042399.1	-1	validated	p.R250I	1.000	312	0%	161	35.4%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
CCDC41	51134	genome.wustl.edu	37	12	94796990	94796990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042399.1	-1	validated	p.E125K	1.000	545	0%	209	39.2%	-	-	possibly_damaging(0.902)	tolerated(0.56)	neutral(0.363)	NULL
RBMS2P1	643427	genome.wustl.edu	37	12	94818033	94818033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393113	-1	known	p.W208R	1.000	362	0%	233	35.6%	-	-	-	-	-	NULL
RBMS2P1	643427	genome.wustl.edu	37	12	94818153	94818153	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393113	-1	known	p.K168Q	1.000	209	0%	134	39.6%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TMCC3	57458	genome.wustl.edu	37	12	94965440	94965440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020698.2	-1	validated	p.T402I	0.996	308	0%	201	31.3%	-	-	benign(0.086)	tolerated(0.28)	neutral(0.038)	HMMPfam_Tmemb_cc2
VEZT	55591	genome.wustl.edu	37	12	95681476	95681476	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017599.3	+1	validated	p.V455	1.000	181	0%	75	33.3%	-	-	-	-	-	NULL
METAP2	10988	genome.wustl.edu	37	12	95905696	95905696	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006838.3	+1	reviewed	p.G330	0.998	364	0%	167	35.3%	-	-	-	-	-	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
LTA4H	4048	genome.wustl.edu	37	12	96421316	96421316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000895.1	-1	provisional	p.S106Y	0.866	172	0%	91	30.8%	-	-	benign(0.041)	tolerated(0.33)	neutral(0.026)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
ELK3	2004	genome.wustl.edu	37	12	96617428	96617428	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005230.2	+1	reviewed	p.S28	0.956	198	0%	133	26.3%	-	-	-	-	-	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
CDK17	5128	genome.wustl.edu	37	12	96682999	96682999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002595.3	-1	reviewed	p.R355Q	1.000	493	0%	285	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000227825	0	genome.wustl.edu	37	12	98849342	98849342	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370696	-1	known	p.G186*	1.000	189	0%	134	38.1%	-	-	-	-	-	HMMPfam_Na_H_Exchanger
TMPO	7112	genome.wustl.edu	37	12	98909645	98909645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000343315	+1	known	p.E33D	1.000	33	0%	20	20%	-	-	-	-	-	NULL
TMPO	7112	genome.wustl.edu	37	12	98927144	98927144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003276.2	+1	reviewed	p.S370Y	1.000	154	0%	97	34%	-	-	possibly_damaging(0.824)	deleterious(0)	deleterious(0.756)	NULL
TMPO	7112	genome.wustl.edu	37	12	98928026	98928026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003276.2	+1	reviewed	p.S664Y	1.000	94	0%	42	21.4%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
APAF1	317	genome.wustl.edu	37	12	99043444	99043444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181861.1	+1	reviewed	p.D170Y	1.000	338	0%	180	41.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_NB-ARC,superfamily_WD40 repeat-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM71C	196472	genome.wustl.edu	37	12	100042058	100042058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153364.1	+1	predicted	p.E36K	0.179	160	0%	91	37.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100441403	100441403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.R1329Q	0.955	221	0%	131	29%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100476837	100476837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.S455Y	1.000	371	0%	169	39.1%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ANO4	121601	genome.wustl.edu	37	12	101490414	101490414	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178826.3	+1	validated	p.F578	1.000	287	0%	160	22.5%	-	-	-	-	-	NULL
UTP20	27340	genome.wustl.edu	37	12	101705988	101705988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.T829N	1.000	232	0%	94	37.2%	-	-	benign(0.004)	tolerated(0.53)	neutral(0.007)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101727125	101727125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.G1155V	1.000	304	0%	121	25.6%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101774984	101774984	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.E2551*	1.000	219	0%	124	42.7%	-	-	-	-	-	superfamily_ARM repeat
SPIC	121599	genome.wustl.edu	37	12	101873414	101873414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152323.1	+1	provisional	p.S51F	0.223	271	0%	116	38.8%	-	-	possibly_damaging(0.906)	tolerated(0.17)	neutral(0.418)	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102158081	102158081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024312.4	-1	reviewed	p.V872I	0.000	760	0%	377	34.5%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102174052	102174052	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024312.4	-1	reviewed	p.E217*	1.000	429	0%	255	38%	-	-	-	-	-	NULL
CCDC53	51019	genome.wustl.edu	37	12	102419762	102419762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016053.2	-1	validated	p.D164Y	1.000	302	0%	137	39.4%	-	-	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	HMMPfam_DUF2360
PARPBP	55010	genome.wustl.edu	37	12	102589943	102589943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017915.2	+1	predicted	p.K457N	0.087	204	0%	77	39%	-	-	benign(0.126)	tolerated(0.26)	neutral(0.045)	NULL
PMCH	5367	genome.wustl.edu	37	12	102590434	102590434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002674.2	-1	validated	p.V165A	1.000	152	0%	45	37.8%	-	-	benign(0.227)	deleterious(0.01)	neutral(0.428)	HMMPfam_Pro-MCH
C12orf42	374470	genome.wustl.edu	37	12	103699754	103699754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099336.1	-1	validated	p.S210Y	0.009	79	0%	40	22.5%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
HSP90B1	7184	genome.wustl.edu	37	12	104326086	104326086	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003299.1	+1	provisional	p.N62H	1.000	176	0%	73	42.5%	-	-	possibly_damaging(0.843)	deleterious(0)	deleterious(0.768)	NULL
HSP90B1	7184	genome.wustl.edu	37	12	104337001	104337001	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003299.1	+1	provisional	p.F598	1.000	361	0%	131	42.7%	-	-	-	-	-	HMMPfam_HSP90
HSP90B1	7184	genome.wustl.edu	37	12	104341158	104341158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003299.1	+1	provisional	p.E778K	0.617	1163	0%	381	34.6%	-	-	unknown(0)	tolerated(0.24)	-	HMMPfam_HSP90
HCFC2	29915	genome.wustl.edu	37	12	104473321	104473321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013320.2	+1	reviewed	p.E191G	1.000	301	1%	167	15%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
HCFC2	29915	genome.wustl.edu	37	12	104495794	104495794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013320.2	+1	reviewed	p.L643I	1.000	373	0%	191	33%	-	-	possibly_damaging(0.917)	deleterious(0.01)	deleterious(0.774)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
EID3	493861	genome.wustl.edu	37	12	104698410	104698410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008394.1	+1	provisional	p.R233Q	0.002	249	0%	114	37.7%	-	-	benign(0.023)	tolerated(0.58)	neutral(0.006)	HMMPfam_Nse4
KIAA1033	23325	genome.wustl.edu	37	12	105534077	105534077	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015275.1	+1	validated	p.I486	1.000	352	0%	190	34.2%	-	-	-	-	-	NULL
NUAK1	9891	genome.wustl.edu	37	12	106461102	106461102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359413	-1	known	p.R201Q	0.015	204	0.5%	130	38.5%	-	-	unknown(0)	deleterious(0.04)	-	HMMSmart_SM00219,HMMSmart_SM00220
LOC341378	341378	genome.wustl.edu	37	12	106565705	106565705	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715424.1	+1	model	p.L183	0.978	417	0%	180	34.4%	-	-	-	-	-	NULL
CKAP4	10970	genome.wustl.edu	37	12	106633278	106633278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006825.3	-1	validated	p.E445K	0.811	18	0%	19	36.8%	-	-	possibly_damaging(0.837)	tolerated(0.37)	neutral(0.339)	NULL
CKAP4	10970	genome.wustl.edu	37	12	106633584	106633584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006825.3	-1	validated	p.D343N	0.612	70	0%	65	49.2%	-	-	benign(0.098)	tolerated(0.25)	neutral(0.044)	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106740070	106740070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152772.1	+1	provisional	p.R441Q	1.000	118	0%	74	29.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tcp11
POLR3B	55703	genome.wustl.edu	37	12	106848407	106848407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018082.5	+1	validated	p.Q737H	1.000	247	0%	130	10%	-	-	benign(0.111)	tolerated(0.1)	neutral(0.295)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
RFX4	5992	genome.wustl.edu	37	12	107078643	107078643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032491.4	+1	reviewed	p.Q18K	0.060	238	0%	109	36.7%	-	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
RFX4	5992	genome.wustl.edu	37	12	107109305	107109305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213594.1	+1	reviewed	p.R374Q	1.000	361	0%	145	31%	-	-	benign(0.199)	tolerated(0.53)	neutral(0.026)	NULL
RIC8B	55188	genome.wustl.edu	37	12	107268289	107268289	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355478	+1	known	p.D494	1.000	291	0%	172	41.9%	-	-	-	-	-	HMMPfam_Ric8
MTERFD3	80298	genome.wustl.edu	37	12	107371730	107371730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033050.1	-1	validated	p.L255I	1.000	126	0.8%	57	35.1%	-	-	benign(0.003)	tolerated(0.88)	-	HMMPfam_mTERF
BTBD11	121551	genome.wustl.edu	37	12	108004016	108004016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018072.1	+1	validated	p.E565K	1.000	134	0%	92	31.5%	-	-	probably_damaging(0.979)	tolerated(0.81)	neutral(0.422)	NULL
BTBD11	121551	genome.wustl.edu	37	12	108029072	108029072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018072.1	+1	validated	p.I881T	1.000	190	0%	95	22.1%	-	-	possibly_damaging(0.932)	tolerated(0.85)	neutral(0.379)	NULL
PRDM4	11108	genome.wustl.edu	37	12	108137013	108137013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012406.3	-1	reviewed	p.E481G	1.000	273	0%	205	37.1%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SET
FICD	11153	genome.wustl.edu	37	12	108912469	108912469	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007076.2	+1	validated	p.I198	1.000	139	0%	94	31.9%	-	-	-	-	-	NULL
SELPLG	6404	genome.wustl.edu	37	12	109017326	109017326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003006.3	-1	reviewed	p.T243N	0.000	978	0.1%	758	34.6%	-	-	possibly_damaging(0.662)	tolerated(0.2)	neutral(0.283)	NULL
CORO1C	23603	genome.wustl.edu	37	12	109072154	109072154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014325.2	-1	reviewed	p.K71T	1.000	136	0%	110	39.1%	-	-	benign(0.427)	tolerated(0.49)	neutral(0.150)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SSH1	54434	genome.wustl.edu	37	12	109192889	109192889	+	Silent	SNP	G	G	A	rs184372660	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018984.3	-1	validated	p.F412	0.653	126	0%	101	81.2%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
SSH1	54434	genome.wustl.edu	37	12	109246430	109246430	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018984.3	-1	validated	p.R32*	0.777	226	0%	140	40%	-	-	-	-	-	NULL
DAO	1610	genome.wustl.edu	37	12	109293207	109293207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001917.4	+1	reviewed	p.R290W	0.995	81	0%	48	43.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAO,superfamily_Nucleotide-binding domain
DAO	1610	genome.wustl.edu	37	12	109294262	109294262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001917.4	+1	reviewed	p.R332I	0.998	120	0%	65	29.2%	-	-	benign(0.049)	deleterious(0.03)	neutral(0.367)	superfamily_Nucleotide-binding domain
ACACB	32	genome.wustl.edu	37	12	109610110	109610110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.E356K	1.000	308	0%	272	33.8%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain
ACACB	32	genome.wustl.edu	37	12	109613968	109613968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.R446I	0.900	271	0%	176	33%	-	-	possibly_damaging(0.667)	tolerated(0.09)	deleterious(0.532)	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
ACACB	32	genome.wustl.edu	37	12	109637212	109637212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.R878Q	1.000	268	0.4%	161	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACACB	32	genome.wustl.edu	37	12	109689870	109689870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.G1937V	1.000	105	0%	63	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
MYO1H	283446	genome.wustl.edu	37	12	109845746	109845746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101421.3	+1	provisional	p.L379F	0.000	420	0%	188	10.1%	-	-	unknown(0)	tolerated(0.7)	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
UBE3B	89910	genome.wustl.edu	37	12	109926461	109926461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130466.2	+1	reviewed	p.L178I	0.995	355	0%	206	36.9%	-	-	benign(0.196)	tolerated(0.06)	neutral(0.341)	NULL
UBE3B	89910	genome.wustl.edu	37	12	109959078	109959078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130466.2	+1	reviewed	p.F734L	1.000	342	0%	155	32.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MMAB	326625	genome.wustl.edu	37	12	110002938	110002938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052845.3	-1	reviewed	p.E112K	0.193	241	0%	159	13.8%	-	-	benign(0.024)	tolerated(0.17)	neutral(0.060)	HMMPfam_Cob_adeno_trans,superfamily_Cobalamin adenosyltransferase-like
MVK	4598	genome.wustl.edu	37	12	110029057	110029057	+	Silent	SNP	C	C	T	rs34975996	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000431.2	+1	reviewed	p.I260	1.000	273	0%	150	28%	-	-	-	-	-	superfamily_GHMP Kinase C-terminal domain
C12orf34	84915	genome.wustl.edu	37	12	110205845	110205845	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032829.2	+1	validated	p.S37	1.000	44	0%	40	30%	-	-	-	-	-	NULL
TRPV4	59341	genome.wustl.edu	37	12	110234490	110234490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021625.4	-1	reviewed	p.R391Q	1.000	116	0%	95	37.9%	-	-	possibly_damaging(0.892)	tolerated(1)	neutral(0.351)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GIT2	9815	genome.wustl.edu	37	12	110370837	110370837	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057169.3	-1	reviewed	p.I742	1.000	371	0%	229	39.3%	-	-	-	-	-	NULL
ANKRD13A	88455	genome.wustl.edu	37	12	110463586	110463586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033121.1	+1	validated	p.R281C	1.000	432	0.5%	253	13.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HVCN1	84329	genome.wustl.edu	37	12	111099203	111099203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040107.1	-1	validated	p.F24L	1.000	149	0%	120	40.8%	-	-	possibly_damaging(0.636)	deleterious(0.03)	deleterious(0.587)	NULL
PPP1CC	5501	genome.wustl.edu	37	12	111158933	111158933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002710.2	-1	validated	p.T307M	1.000	868	0%	438	37.7%	-	-	benign(0.019)	tolerated(0.1)	neutral(0.287)	NULL
CCDC63	160762	genome.wustl.edu	37	12	111311649	111311649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152591.1	+1	provisional	p.L125I	0.045	185	0%	84	47.6%	-	-	benign(0.024)	tolerated(0.09)	neutral(0.297)	NULL
CCDC63	160762	genome.wustl.edu	37	12	111322047	111322047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152591.1	+1	provisional	p.R356Q	0.003	182	0%	107	37.4%	-	-	possibly_damaging(0.948)	tolerated(0.31)	neutral(0.418)	NULL
ATXN2	6311	genome.wustl.edu	37	12	111958758	111958758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002973.3	-1	reviewed	p.N399S	1.000	249	0%	131	28.2%	-	-	benign(0.009)	deleterious(0.05)	neutral(0.346)	NULL
BRAP	8315	genome.wustl.edu	37	12	112096635	112096635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006768.3	-1	reviewed	p.R376*	1.000	465	0.2%	291	37.1%	-	-	-	-	-	HMMPfam_zf-UBP
TMEM116	89894	genome.wustl.edu	37	12	112370395	112370395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138341.1	-1	provisional	p.L176I	1.000	399	0%	219	33.8%	-	-	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	NULL
NAA25	80018	genome.wustl.edu	37	12	112471084	112471084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024953.3	-1	reviewed	p.A917T	1.000	348	0%	166	28.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAA25	80018	genome.wustl.edu	37	12	112509810	112509810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024953.3	-1	reviewed	p.R309W	0.983	249	0%	159	38.4%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_NatB_MDM20,superfamily_TPR-like
C12orf51	283450	genome.wustl.edu	37	12	112620882	112620882	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.F3234	1.000	210	0%	102	39.2%	-	-	-	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112623014	112623014	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.T2830	0.000	32	0%	31	38.7%	-	-	-	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112684854	112684854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.S1033Y	1.000	286	0%	172	34.9%	-	-	possibly_damaging(0.494)	-	-	NULL
RPH3A	22895	genome.wustl.edu	37	12	113328800	113328800	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143854.1	+1	validated	p.F589	1.000	104	0%	93	25.8%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OAS1	4938	genome.wustl.edu	37	12	113357371	113357371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032409.1	+1	reviewed	p.S373Y	0.000	133	0%	55	36.4%	-	-	unknown(0)	deleterious(0)	-	NULL
OAS3	4940	genome.wustl.edu	37	12	113384669	113384669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006187.2	+1	reviewed	p.R253Q	0.735	254	0%	170	40%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
OAS2	4939	genome.wustl.edu	37	12	113425081	113425081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016817.2	+1	reviewed	p.S139Y	0.000	194	0%	86	15.1%	-	-	possibly_damaging(0.716)	deleterious(0.01)	deleterious(0.665)	superfamily_Nucleotidyltransferase
OAS2	4939	genome.wustl.edu	37	12	113444346	113444346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016817.2	+1	reviewed	p.R533C	0.000	149	0%	84	39.3%	-	-	possibly_damaging(0.72)	deleterious(0.03)	deleterious(0.625)	HMMPfam_OAS1_C,superfamily_Nucleotidyltransferase
DTX1	1840	genome.wustl.edu	37	12	113515390	113515390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004416.2	+1	reviewed	p.D141N	1.000	55	0%	33	21.2%	-	-	probably_damaging(0.99)	tolerated(0.17)	deleterious(0.500)	HMMPfam_WWE,HMMSmart_WWE
SDS	10993	genome.wustl.edu	37	12	113836590	113836590	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006843.2	-1	reviewed	p.I85	0.396	58	0%	35	34.3%	-	-	-	-	-	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
TBX5	6910	genome.wustl.edu	37	12	114804186	114804186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000192.3	-1	reviewed	p.P256S	1.000	91	0%	64	21.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TBX5	6910	genome.wustl.edu	37	12	114841665	114841665	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000192.3	-1	reviewed	p.T13	0.703	37	0%	42	40.5%	-	-	-	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116429527	116429527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.D1078N	1.000	199	0%	94	31.9%	-	-	possibly_damaging(0.888)	deleterious(0.04)	deleterious(0.696)	NULL
MED13L	23389	genome.wustl.edu	37	12	116440852	116440852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.R842Q	1.000	308	0%	189	37.6%	-	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
FBXO21	23014	genome.wustl.edu	37	12	117612498	117612498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033624.2	-1	reviewed	p.R233W	0.962	200	0%	91	15.4%	-	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	superfamily_F-box domain
NOS1	4842	genome.wustl.edu	37	12	117718543	117718543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000620.2	-1	reviewed	p.V504A	1.000	104	0%	54	33.3%	-	-	possibly_damaging(0.826)	deleterious(0.04)	deleterious(0.662)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
NOS1	4842	genome.wustl.edu	37	12	117718592	117718592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000620.2	-1	reviewed	p.A488T	1.000	93	0%	81	30.9%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
RFC5	5985	genome.wustl.edu	37	12	118457528	118457528	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007370.4	+1	reviewed	p.A74	0.169	168	0%	112	28.6%	-	-	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
RFC5	5985	genome.wustl.edu	37	12	118464802	118464802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007370.4	+1	reviewed	p.D258Y	1.000	135	0%	65	16.9%	-	-	possibly_damaging(0.776)	deleterious(0)	deleterious(0.734)	superfamily_Pol_clamp_load_C,HMMPfam_Rep_fac_C
SUDS3	64426	genome.wustl.edu	37	12	118838523	118838523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022491.2	+1	validated	p.V193I	1.000	197	0%	83	27.7%	-	-	benign(0.425)	tolerated(0.14)	neutral(0.388)	HMMPfam_Sds3
CCDC60	160777	genome.wustl.edu	37	12	119773056	119773056	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178499.3	+1	validated	p.S25	0.007	105	0%	48	43.8%	-	-	-	-	-	NULL
PRKAB1	5564	genome.wustl.edu	37	12	120111817	120111817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006253.4	+1	reviewed	p.Q124H	1.000	269	0%	167	33.5%	-	-	benign(0.11)	deleterious(0)	neutral(0.453)	NULL
PRKAB1	5564	genome.wustl.edu	37	12	120114410	120114410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006253.4	+1	reviewed	p.R201W	1.000	512	0%	268	34.7%	-	-	possibly_damaging(0.76)	deleterious(0)	deleterious(0.726)	HMMPfam_AMPKBI
CIT	11113	genome.wustl.edu	37	12	120139558	120139558	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	e41-1	1.000	342	0%	179	35.8%	-	-	-	-	-	-
CIT	11113	genome.wustl.edu	37	12	120142174	120142174	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.I1724	0.477	502	0%	280	35%	-	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
CIT	11113	genome.wustl.edu	37	12	120270653	120270653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.E225D	1.000	337	0%	160	36.9%	-	-	possibly_damaging(0.472)	deleterious(0.03)	deleterious(0.520)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PXN	5829	genome.wustl.edu	37	12	120650156	120650156	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080855.1	-1	validated	p.K579	1.000	201	0%	121	43.8%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SIRT4	23409	genome.wustl.edu	37	12	120750737	120750737	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012240.1	+1	reviewed	p.P281	0.002	251	0%	189	39.7%	-	-	-	-	-	superfamily_SSF52467
ANAPC5	51433	genome.wustl.edu	37	12	121758186	121758186	+	Splice_Site	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016237.4	-1	reviewed	e12+2	1.000	137	0%	67	25.4%	-	-	-	-	-	-
ANAPC5	51433	genome.wustl.edu	37	12	121783822	121783822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016237.4	-1	reviewed	p.R137H	1.000	369	0%	239	41.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM2B	84678	genome.wustl.edu	37	12	121868162	121868162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032590.4	-1	reviewed	p.F1314L	1.000	302	0%	196	39.3%	-	-	possibly_damaging(0.888)	tolerated(0.09)	deleterious(0.644)	HMMSmart_SM00367,superfamily_RNI-like
KDM2B	84678	genome.wustl.edu	37	12	121878655	121878655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032590.4	-1	reviewed	p.R1192W	1.000	52	0%	30	30%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00367,superfamily_RNI-like
ORAI1	84876	genome.wustl.edu	37	12	122064774	122064779	+	In_Frame_Del	DEL	CCGCCA	CCGCCA	-	rs141919534	byCluster;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	CCGCCA	CCGCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032790.3	+1	reviewed	p.PP46in_frame_del	0.716:0.710:0.709:0.897:0.997:0.999	-	-	-	-	-	-	-	-	-	NULL
TMEM120B	144404	genome.wustl.edu	37	12	122213003	122213003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080825.2	+1	validated	p.E291D	0.997	59	0%	46	21.7%	-	-	benign(0.01)	tolerated(0.38)	neutral(0.018)	HMMPfam_TMPIT
SETD1B	23067	genome.wustl.edu	37	12	122252609	122252609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.R830C	0.838	69	0%	38	39.5%	-	-	unknown(0)	-	-	NULL
WDR66	144406	genome.wustl.edu	37	12	122398591	122398591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144668.4	+1	validated	p.R745Q	0.002	279	0.4%	149	41.6%	-	-	benign(0.058)	tolerated(0.65)	neutral(0.007)	HMMSmart_SM00320,superfamily_WD40 repeat-like
VPS33A	65082	genome.wustl.edu	37	12	122723216	122723216	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022916.4	-1	validated	p.L407*	0.994	232	0%	109	22.9%	-	-	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
CLIP1	6249	genome.wustl.edu	37	12	122763691	122763691	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002956.2	-1	validated	p.E1206*	1.000	262	0%	129	48.8%	-	-	-	-	-	NULL
CLIP1	6249	genome.wustl.edu	37	12	122801387	122801387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002956.2	-1	validated	p.E1117*	1.000	384	0%	181	39.2%	-	-	-	-	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123055635	123055635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.E661K	0.001	287	0%	181	40.9%	-	-	unknown(0)	tolerated(0.78)	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123057706	123057706	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.I719	0.916	400	0%	239	40.2%	-	-	-	-	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123057714	123057714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.R722Q	1.000	409	0%	251	29.9%	-	-	unknown(0)	tolerated(0.16)	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123087284	123087284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.L1608I	0.987	409	0%	252	31.3%	-	-	benign(0.003)	tolerated(1)	-	HMMPfam_Rod_C
KNTC1	9735	genome.wustl.edu	37	12	123107038	123107038	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.I2133	0.988	153	0%	75	14.7%	-	-	-	-	-	NULL
HCAR2	338442	genome.wustl.edu	37	12	123187037	123187037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177551.3	-1	validated	p.N265T	0.014	292	0%	169	37.3%	-	-	benign(0.018)	tolerated(0.73)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
CCDC62	84660	genome.wustl.edu	37	12	123281894	123281894	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201435.3	+1	validated	p.A271	0.840	230	0%	101	25.7%	-	-	-	-	-	NULL
CCDC62	84660	genome.wustl.edu	37	12	123285717	123285717	+	Missense_Mutation	SNP	G	G	A	rs188186254	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201435.3	+1	validated	p.D342N	0.096	180	0.6%	93	34.4%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
PITPNM2	57605	genome.wustl.edu	37	12	123479487	123479487	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020845.2	-1	validated	p.R698	0.994	49	0%	27	51.9%	-	-	-	-	-	NULL
PITPNM2	57605	genome.wustl.edu	37	12	123488954	123488954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020845.2	-1	validated	p.F345L	1.000	109	0%	77	39%	-	-	possibly_damaging(0.676)	deleterious(0)	deleterious(0.685)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123648624	123648624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.Q775H	0.001	307	0%	117	34.2%	-	-	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123686721	123686721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.L491I	0.998	174	0%	124	21%	-	-	possibly_damaging(0.938)	tolerated(0.05)	deleterious(0.729)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123687557	123687557	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.P313	0.000	188	0%	96	33.3%	-	-	-	-	-	NULL
SBNO1	55206	genome.wustl.edu	37	12	123794080	123794080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018183.3	-1	validated	p.L1164M	1.000	217	0%	140	30.7%	-	-	possibly_damaging(0.595)	tolerated(0.17)	neutral(0.265)	NULL
GTF2H3	2967	genome.wustl.edu	37	12	124132651	124132651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001516.3	+1	provisional	p.E114D	1.000	112	0.9%	62	11.3%	-	-	possibly_damaging(0.866)	tolerated(0.3)	neutral(0.364)	HMMPfam_Tfb4
DNAH10	196385	genome.wustl.edu	37	12	124311257	124311257	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.Q1283	1.000	241	0%	132	40.9%	-	-	-	-	-	HMMPfam_DHC_N2
DNAH10	196385	genome.wustl.edu	37	12	124315193	124315193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.D1380N	0.887	183	0%	91	40.7%	-	-	benign(0.017)	tolerated(0.31)	neutral(0.028)	HMMPfam_DHC_N2
DNAH10	196385	genome.wustl.edu	37	12	124333344	124333344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.R1888Q	1.000	471	0%	283	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124345601	124345601	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.A2146	0.002	163	0%	76	46.1%	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124398942	124398942	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.C3355	0.003	71	0%	55	40%	-	-	-	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124401100	124401100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.D3489N	1.000	274	0%	147	36.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124907083	124907083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006312.3	-1	validated	p.K449N	1.000	152	0%	88	31.8%	-	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
UBC	7316	genome.wustl.edu	37	12	125396635	125396635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021009.4	-1	validated	p.K561N	1.000	787	0%	484	20.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like
TMEM132B	114795	genome.wustl.edu	37	12	126004006	126004006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052907.2	+1	provisional	p.E371D	1.000	387	0%	137	38%	-	-	possibly_damaging(0.933)	deleterious(0.03)	deleterious(0.744)	NULL
TMEM132C	92293	genome.wustl.edu	37	12	128899899	128899899	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136103.2	+1	provisional	p.N124	0.006	96	0%	53	30.2%	-	-	-	-	-	NULL
TMEM132C	92293	genome.wustl.edu	37	12	129190089	129190089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136103.2	+1	provisional	p.T747M	0.994	13	0%	10	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC15A4	121260	genome.wustl.edu	37	12	129299465	129299465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145648.3	-1	validated	p.V233I	1.000	243	0%	142	31%	-	-	benign(0.001)	tolerated(0.77)	neutral(0.001)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
TMEM132D	121256	genome.wustl.edu	37	12	129559341	129559341	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133448.2	-1	validated	p.I793	0.811	342	0.6%	257	37%	-	-	-	-	-	NULL
PIWIL1	9271	genome.wustl.edu	37	12	130840102	130840102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004764.3	+1	reviewed	p.D432N	0.997	286	0%	164	33.5%	-	-	benign(0.022)	tolerated(0.45)	neutral(0.013)	NULL
PIWIL1	9271	genome.wustl.edu	37	12	130840189	130840189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004764.3	+1	reviewed	p.K461Q	1.000	355	0%	192	39.1%	-	-	benign(0.197)	deleterious(0.03)	neutral(0.383)	NULL
PIWIL1	9271	genome.wustl.edu	37	12	130855795	130855795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004764.3	+1	reviewed	p.D799G	1.000	352	0%	214	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
RIMBP2	23504	genome.wustl.edu	37	12	130934792	130934792	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015347.4	-1	validated	p.S161	0.998	396	0%	217	35.5%	-	-	-	-	-	superfamily_SH3-domain
STX2	2054	genome.wustl.edu	37	12	131285745	131285745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194356.1	-1	reviewed	p.E210K	1.000	282	0%	121	36.4%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
GPR133	283383	genome.wustl.edu	37	12	131471728	131471728	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198827.3	+1	validated	p.P193	0.000	187	0%	119	36.1%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
ULK1	8408	genome.wustl.edu	37	12	132401034	132401034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003565.2	+1	validated	p.R657Q	1.000	58	0%	67	17.9%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
EP400	57634	genome.wustl.edu	37	12	132502776	132502776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.D1377Y	1.000	90	0%	27	33.3%	-	-	unknown(0)	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132514442	132514442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.D1859N	1.000	90	0%	107	31.8%	-	-	unknown(0)	-	-	superfamily_SSF52540
EP400	57634	genome.wustl.edu	37	12	132554161	132554161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.A2998V	0.788	92	0%	54	35.2%	-	-	benign(0.168)	-	-	NULL
EP400NL	347918	genome.wustl.edu	37	12	132588863	132588863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376625	+1	known	p.R100W	0.997	107	0%	68	30.9%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
DDX51	317781	genome.wustl.edu	37	12	132624710	132624710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175066.3	-1	validated	p.D570N	1.000	28	0%	26	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
NOC4L	79050	genome.wustl.edu	37	12	132630149	132630149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024078.1	+1	provisional	p.R95H	0.927	131	0%	79	43%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FBRSL1	57666	genome.wustl.edu	37	12	133102361	133102361	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142641.1	+1	validated	p.D177	0.006	29	0%	32	56.2%	-	-	-	-	-	NULL
P2RX2	22953	genome.wustl.edu	37	12	133196269	133196269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170683.2	+1	reviewed	p.G105D	1.000	21	0%	17	52.9%	-	-	probably_damaging(0.984)	tolerated(0.91)	neutral(0.430)	HMMPfam_P2X_receptor
POLE	5426	genome.wustl.edu	37	12	133219452	133219452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.L1561P	1.000	230	0%	117	25.6%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_DUF1744
POLE	5426	genome.wustl.edu	37	12	133225525	133225525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.S1380L	0.457	70	0%	47	34%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
POLE	5426	genome.wustl.edu	37	12	133253184	133253184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.P286R	1.000	236	0%	115	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
ANKLE2	23141	genome.wustl.edu	37	12	133306773	133306773	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015114.1	-1	validated	p.R659*	0.692	43	0%	26	34.6%	-	-	-	-	-	NULL
ANKLE2	23141	genome.wustl.edu	37	12	133324430	133324430	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015114.1	-1	validated	p.T406	0.017	187	0%	127	43.3%	-	-	-	-	-	superfamily_Ankyrin repeat
GOLGA3	2802	genome.wustl.edu	37	12	133393232	133393232	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005895.3	-1	reviewed	p.F100	1.000	138	0%	97	38.1%	-	-	-	-	-	NULL
ZNF10	7556	genome.wustl.edu	37	12	133733358	133733358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015394.4	+1	reviewed	p.R509K	0.905	194	0%	112	32.1%	-	-	benign(0.108)	tolerated(0.1)	neutral(0.295)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC729535	729535	genome.wustl.edu	37	13	19271433	19271433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001130539.3	+1	model	p.E109K	0.077	47	0%	40	45%	-	-	-	-	-	NULL
MPHOSPH8	54737	genome.wustl.edu	37	13	20220649	20220649	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017520.3	+1	validated	p.E146*	1.000	61	0%	34	38.2%	-	-	-	-	-	NULL
MPHOSPH8	54737	genome.wustl.edu	37	13	20233159	20233159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017520.3	+1	validated	p.L534S	1.000	458	0%	242	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
MPHOSPH8	54737	genome.wustl.edu	37	13	20240600	20240600	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017520.3	+1	validated	p.L685	0.553	182	0%	98	39.8%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ZMYM5	9205	genome.wustl.edu	37	13	20399047	20399047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142684.1	-1	validated	p.R527Q	0.767	151	0.7%	93	34.4%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20577182	20577182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003453.2	+1	validated	p.R347Q	0.998	378	0.3%	176	40.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-FCS,HMMSmart_TRASH
GJA3	2700	genome.wustl.edu	37	13	20716331	20716331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021954.3	-1	reviewed	p.A366V	0.000	30	0%	15	53.3%	-	-	benign(0.191)	tolerated(0.29)	neutral(0.047)	NULL
GJA3	2700	genome.wustl.edu	37	13	20717243	20717243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021954.3	-1	reviewed	p.E62G	1.000	309	0%	190	32.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1
LATS2	26524	genome.wustl.edu	37	13	21549161	21549161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014572.2	-1	reviewed	p.E1039K	1.000	463	0.2%	282	32.3%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_S_TK_X,HMMPfam_Pkinase_C
LATS2	26524	genome.wustl.edu	37	13	21549231	21549231	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014572.2	-1	reviewed	p.S1015	0.765	580	0%	340	35.6%	-	-	-	-	-	HMMSmart_S_TK_X,HMMPfam_Pkinase_C
SKA3	221150	genome.wustl.edu	37	13	21732080	21732080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314759	-1	known	p.I367S	0.989	253	0%	146	17.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SKA3	221150	genome.wustl.edu	37	13	21742142	21742142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314759	-1	known	p.A243V	0.019	456	0%	270	25.9%	-	-	benign(0)	tolerated(1)	-	NULL
SKA3	221150	genome.wustl.edu	37	13	21746612	21746612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314759	-1	known	p.R66I	0.412	269	0%	127	27.6%	-	-	possibly_damaging(0.462)	tolerated(0.2)	neutral(0.201)	NULL
ZDHHC20	253832	genome.wustl.edu	37	13	21987895	21987895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153251.2	-1	provisional	p.S89Y	0.997	428	0%	196	11.7%	-	-	possibly_damaging(0.753)	deleterious(0.01)	deleterious(0.682)	NULL
EFHA1	221154	genome.wustl.edu	37	13	22084147	22084147	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152726.2	-1	validated	p.R253*	1.000	117	0%	48	56.2%	-	-	-	-	-	superfamily_SSF47473
FGF9	2254	genome.wustl.edu	37	13	22275367	22275367	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002010.2	+1	reviewed	p.F140	1.000	204	0%	84	28.6%	-	-	-	-	-	HMMPfam_FGF,HMMSmart_SM00442,PatternScan_HBGF_FGF,superfamily_Cytokine
ENSG00000253094	0	genome.wustl.edu	37	13	23377292	23377292	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000517285	+1	novel	NULL	0.004	47	0%	16	43.8%	-	-	-	-	-	-
SGCG	6445	genome.wustl.edu	37	13	23808807	23808807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000231.2	+1	reviewed	p.E85K	0.998	227	0%	95	33.7%	-	-	possibly_damaging(0.911)	tolerated(0.27)	neutral(0.396)	HMMPfam_Sarcoglycan_1
SGCG	6445	genome.wustl.edu	37	13	23824778	23824778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000231.2	+1	reviewed	p.L103M	1.000	313	0%	192	12%	-	-	possibly_damaging(0.889)	deleterious(0.01)	deleterious(0.755)	HMMPfam_Sarcoglycan_1
SGCG	6445	genome.wustl.edu	37	13	23824855	23824855	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000231.2	+1	reviewed	p.V128	0.999	304	0%	171	36.3%	-	-	-	-	-	HMMPfam_Sarcoglycan_1
SACS	26278	genome.wustl.edu	37	13	23906318	23906318	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.L3899	0.800	189	0%	113	30.1%	-	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23907648	23907648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.K3456T	0.972	270	0%	174	12.1%	-	-	benign(0.032)	tolerated(0.64)	neutral(0.005)	NULL
SACS	26278	genome.wustl.edu	37	13	23909298	23909298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.R2906Q	0.991	277	0%	135	32.6%	-	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	NULL
SACS	26278	genome.wustl.edu	37	13	23912385	23912385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.R1877Q	0.998	239	0%	173	31.2%	-	-	probably_damaging(0.996)	tolerated(0.38)	deleterious(0.479)	NULL
SACS	26278	genome.wustl.edu	37	13	23913743	23913743	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.E1424	0.998	588	0%	321	43.3%	-	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23915259	23915259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.R919I	1.000	307	0%	155	34.8%	-	-	benign(0.038)	tolerated(0.11)	neutral(0.274)	NULL
MIPEP	4285	genome.wustl.edu	37	13	24410407	24410407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005932.2	-1	reviewed	p.Q542P	0.999	208	0.5%	105	36.2%	-	-	benign(0.011)	tolerated(0.27)	neutral(0.034)	HMMPfam_Peptidase_M3,superfamily_SSF55486
SPATA13	221178	genome.wustl.edu	37	13	24876764	24876764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424834	+1	known	p.A1267T	0.174	97	1%	102	44.1%	-	-	unknown(0)	deleterious(0.01)	-	NULL
C1QTNF9	338872	genome.wustl.edu	37	13	24895133	24895133	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178540.3	+1	validated	e3-1	0.996	236	0%	105	41.9%	-	-	-	-	-	-
RNF17	56163	genome.wustl.edu	37	13	25370331	25370331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.R433W	1.000	361	0%	173	23.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TUDOR
RNF17	56163	genome.wustl.edu	37	13	25444872	25444872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.R1481I	0.922	223	0%	92	40.2%	-	-	probably_damaging(0.965)	tolerated(0.17)	neutral(0.466)	HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT
CENPJ	55835	genome.wustl.edu	37	13	25473675	25473675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018451.3	-1	reviewed	p.R958Q	1.000	417	0%	205	30.7%	-	-	benign(0.106)	tolerated(0.51)	neutral(0.017)	NULL
CENPJ	55835	genome.wustl.edu	37	13	25473676	25473676	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018451.3	-1	reviewed	p.R958*	1.000	416	0.2%	205	37.1%	-	-	-	-	-	NULL
CENPJ	55835	genome.wustl.edu	37	13	25486941	25486941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018451.3	-1	reviewed	p.L75I	1.000	644	0.2%	295	38%	-	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
FAM123A	219287	genome.wustl.edu	37	13	25744289	25744289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152704.2	-1	validated	p.R490H	0.982	63	0%	49	30.6%	-	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_WTX
MTMR6	9107	genome.wustl.edu	37	13	25848237	25848237	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004685.3	-1	validated	p.F38C	1.000	324	0%	200	35%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PH domain-like
NUPL1	9818	genome.wustl.edu	37	13	25905590	25905590	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014089.3	+1	reviewed	p.Q443	1.000	284	0%	132	34.1%	-	-	-	-	-	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26127988	26127988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.N372T	1.000	430	0%	242	31%	-	-	possibly_damaging(0.943)	tolerated(0.26)	neutral(0.421)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26413696	26413696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.H964N	1.000	473	0%	260	36.9%	-	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
WASF3	10810	genome.wustl.edu	37	13	27246118	27246118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006646.5	+1	reviewed	p.R178C	0.998	377	0%	98	33.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTIF3	219402	genome.wustl.edu	37	13	28014221	28014221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152912.4	-1	reviewed	p.S122N	0.000	238	0%	167	39.5%	-	-	benign(0.002)	tolerated(0.86)	neutral(0.001)	HMMPfam_IF3_N,superfamily_Translation initiation factor IF3 N-terminal domain
LNX2	222484	genome.wustl.edu	37	13	28143390	28143390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153371.3	-1	validated	p.R144K	1.000	311	0.3%	183	25.7%	-	-	benign(0.006)	tolerated(0.91)	-	NULL
GSX1	219409	genome.wustl.edu	37	13	28367824	28367824	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145657.1	+1	provisional	p.I178	1.000	92	0%	62	33.9%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
FLT3	2322	genome.wustl.edu	37	13	28578280	28578280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004119.2	-1	reviewed	p.E964A	0.008	219	0%	97	38.1%	-	-	benign(0.01)	tolerated(0.36)	neutral(0.021)	NULL
FLT3	2322	genome.wustl.edu	37	13	28589298	28589298	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004119.2	-1	reviewed	p.E917*	1.000	229	0%	108	32.4%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FLT3	2322	genome.wustl.edu	37	13	28622457	28622457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004119.2	-1	reviewed	p.R387Q	0.004	440	0.2%	231	30.3%	-	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
FLT3	2322	genome.wustl.edu	37	13	28623642	28623642	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004119.2	-1	reviewed	p.T305	0.134	252	0%	152	38.2%	-	-	-	-	-	HMMPfam_ig,superfamily_SSF48726
POMP	51371	genome.wustl.edu	37	13	29252186	29252186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015932.4	+1	validated	p.E125K	1.000	515	0%	259	41.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UMP1
SLC46A3	283537	genome.wustl.edu	37	13	29275094	29275094	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135919.1	-1	validated	e6-1	0.146	183	0%	62	16.1%	-	-	-	-	-	-
SLC46A3	283537	genome.wustl.edu	37	13	29286954	29286954	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135919.1	-1	validated	p.F308C	0.969	265	0%	111	30.6%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MTUS2	23281	genome.wustl.edu	37	13	29600457	29600457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033602.2	+1	validated	p.T551N	0.576	223	0%	158	13.3%	-	-	benign(0.116)	deleterious(0)	neutral(0.454)	NULL
SLC7A1	6541	genome.wustl.edu	37	13	30098339	30098339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003045.4	-1	validated	p.F252L	0.195	99	0%	49	49%	-	-	benign(0.003)	tolerated(0.41)	neutral(0.015)	HMMPfam_AA_permease
SLC7A1	6541	genome.wustl.edu	37	13	30106997	30106997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003045.4	-1	validated	p.D165N	1.000	256	0.4%	137	46%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
KATNAL1	84056	genome.wustl.edu	37	13	30814610	30814610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014380.1	-1	validated	p.R238I	1.000	337	0%	212	15.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HMGB1	3146	genome.wustl.edu	37	13	31035654	31035654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002128.4	-1	validated	p.R163Q	1.000	544	0%	289	35.3%	-	-	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
TEX26	122046	genome.wustl.edu	37	13	31549009	31549009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152325.1	+1	predicted	p.R279C	0.149	397	0%	181	32.6%	-	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31711477	31711477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006644.2	-1	validated	p.S852Y	0.077	495	0.2%	233	31.8%	-	-	benign(0.296)	deleterious(0.03)	neutral(0.456)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31725128	31725128	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006644.2	-1	validated	p.I288	0.972	393	0%	228	35.5%	-	-	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
FRY	10129	genome.wustl.edu	37	13	32709071	32709071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.D306Y	1.000	371	0.3%	168	29.8%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
FRY	10129	genome.wustl.edu	37	13	32753060	32753060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.L921I	1.000	275	0%	115	40.9%	-	-	possibly_damaging(0.5)	tolerated(0.09)	neutral(0.464)	NULL
FRY	10129	genome.wustl.edu	37	13	32759117	32759117	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.N1051H	1.000	230	0%	119	34.5%	-	-	possibly_damaging(0.938)	deleterious(0.02)	deleterious(0.766)	NULL
FRY	10129	genome.wustl.edu	37	13	32808878	32808878	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.E1899*	1.000	214	0%	131	31.3%	-	-	-	-	-	NULL
FRY	10129	genome.wustl.edu	37	13	32821635	32821635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.S2335L	1.000	277	0.4%	144	40.3%	-	-	benign(0.199)	deleterious(0)	neutral(0.464)	NULL
FRY	10129	genome.wustl.edu	37	13	32868670	32868670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.E2916K	0.999	154	0%	97	33%	-	-	benign(0.036)	deleterious(0.03)	neutral(0.366)	NULL
FRY	10129	genome.wustl.edu	37	13	32869475	32869475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.E2974K	0.937	212	0%	157	40.1%	-	-	possibly_damaging(0.465)	tolerated(0.1)	neutral(0.440)	NULL
BRCA2	675	genome.wustl.edu	37	13	32912540	32912540	+	Missense_Mutation	SNP	C	C	A	rs80359422		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.H1350N	0.002	115	0%	44	31.8%	-	-	probably_damaging(0.956)	tolerated(0.7)	neutral(0.402)	NULL
BRCA2	675	genome.wustl.edu	37	13	32912813	32912813	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.E1441*	0.998	83	0%	54	29.6%	-	-	-	-	-	HMMPfam_BRCA2
N4BP2L2	10443	genome.wustl.edu	37	13	33110955	33110955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014887.2	-1	validated	p.E70D	0.006	321	0%	183	32.2%	-	-	possibly_damaging(0.489)	deleterious(0.02)	deleterious(0.545)	NULL
LOC122038	122038	genome.wustl.edu	37	13	33528348	33528348	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040920.1	-1	model	NULL	1.000	44	0%	28	32.1%	-	-	-	-	-	-
KL	9365	genome.wustl.edu	37	13	33635569	33635569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004795.3	+1	reviewed	p.L785I	0.008	245	0%	140	36.4%	-	-	benign(0.335)	tolerated(0.29)	neutral(0.135)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
NBEA	26960	genome.wustl.edu	37	13	36245087	36245087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.D2934Y	1.000	378	0%	166	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
DCLK1	9201	genome.wustl.edu	37	13	36686206	36686206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004734.3	-1	validated	p.E175K	0.998	121	0%	87	25.3%	-	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	superfamily_SSF89837
SOHLH2	54937	genome.wustl.edu	37	13	36748698	36748698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017826.2	-1	validated	p.E266K	0.887	563	0%	309	37.9%	-	-	possibly_damaging(0.615)	deleterious(0.02)	deleterious(0.597)	NULL
CCDC169	728591	genome.wustl.edu	37	13	36805371	36805371	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144981.1	-1	validated	p.K202Q	0.979	913	0%	443	39.1%	-	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	NULL
SPG20	23111	genome.wustl.edu	37	13	36886510	36886510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142294.1	-1	reviewed	p.D530Y	1.000	282	0%	159	39.6%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
SPG20	23111	genome.wustl.edu	37	13	36909305	36909305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142294.1	-1	reviewed	p.L221F	1.000	103	0%	48	31.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCNA1	8900	genome.wustl.edu	37	13	37012842	37012842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003914.3	+1	reviewed	p.R244H	1.000	383	0%	185	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin-like
SMAD9	4093	genome.wustl.edu	37	13	37439740	37439740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127217.2	-1	reviewed	p.L313I	1.000	237	0%	137	27%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
POSTN	10631	genome.wustl.edu	37	13	38166266	38166266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006475.2	-1	validated	p.R85I	1.000	373	0%	161	29.8%	-	-	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	superfamily_FAS1 domain,HMMPfam_EMI
TRPC4	7223	genome.wustl.edu	37	13	38211379	38211379	+	Missense_Mutation	SNP	G	G	T	rs146885289		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.F870L	1.000	265	0%	174	39.1%	-	-	possibly_damaging(0.686)	deleterious(0.04)	deleterious(0.594)	NULL
TRPC4	7223	genome.wustl.edu	37	13	38213186	38213186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.E739D	1.000	496	0%	330	32.1%	-	-	possibly_damaging(0.685)	tolerated(1)	neutral(0.244)	NULL
TRPC4	7223	genome.wustl.edu	37	13	38266229	38266229	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.L381	1.000	305	0%	140	37.9%	-	-	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38357324	38357324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.K49N	1.000	192	0%	126	40.5%	-	-	benign(0.033)	tolerated(0.05)	neutral(0.347)	superfamily_ANK
FREM2	341640	genome.wustl.edu	37	13	39424215	39424215	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207361.4	+1	reviewed	p.S2140	0.831	313	0%	117	34.2%	-	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
STOML3	161003	genome.wustl.edu	37	13	39542668	39542668	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145286.2	-1	validated	p.L174	0.770	102	0%	67	32.8%	-	-	-	-	-	HMMPfam_Band_7,HMMSmart_PHB,PatternScan_BAND_7
STOML3	161003	genome.wustl.edu	37	13	39564832	39564832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145286.2	-1	validated	p.E9D	1.000	464	0%	221	42.5%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
PROSER1	80209	genome.wustl.edu	37	13	39586855	39586855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025138.3	-1	validated	p.F845C	1.000	286	0%	171	20.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PROSER1	80209	genome.wustl.edu	37	13	39591665	39591665	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025138.3	-1	validated	p.S249	0.818	183	0%	100	35%	-	-	-	-	-	NULL
COG6	57511	genome.wustl.edu	37	13	40261867	40261867	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020751.2	+1	reviewed	p.W314G	1.000	330	0%	137	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COG6
FOXO1	2308	genome.wustl.edu	37	13	41134828	41134828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002015.3	-1	reviewed	p.R267Q	1.000	157	0%	106	41.5%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Fork_head
SLC25A15	10166	genome.wustl.edu	37	13	41373333	41373333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014252.3	+1	reviewed	p.G66S	1.000	239	0%	185	25.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
KBTBD6	89890	genome.wustl.edu	37	13	41705201	41705201	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152903.4	-1	validated	p.R483*	0.995	109	0%	82	68.3%	-	-	-	-	-	HMMSmart_Kelch,superfamily_Gal_oxid_central
KBTBD7	84078	genome.wustl.edu	37	13	41767844	41767844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032138.4	-1	provisional	p.D184N	1.000	187	0%	102	18.6%	-	-	benign(0.373)	tolerated(0.76)	neutral(0.120)	HMMPfam_BACK
KBTBD7	84078	genome.wustl.edu	37	13	41768223	41768223	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032138.4	-1	provisional	p.Y57	1.000	83	0%	57	56.1%	-	-	-	-	-	superfamily_POZ domain,HMMPfam_BTB
NAA16	79612	genome.wustl.edu	37	13	41894814	41894814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024561.4	+1	validated	p.Y86H	1.000	262	0%	131	48.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like
NAA16	79612	genome.wustl.edu	37	13	41932585	41932585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024561.4	+1	validated	p.F411L	1.000	185	0%	98	36.7%	-	-	benign(0.047)	tolerated(0.34)	neutral(0.026)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
KIAA0564	23078	genome.wustl.edu	37	13	42179348	42179348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.R1648W	0.861	256	0%	129	30.2%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42185823	42185823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.R1589Q	1.000	149	0%	145	42.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42460121	42460121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.E304*	1.000	245	0%	85	28.2%	-	-	-	-	-	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42524107	42524107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.I69N	0.983	127	0%	50	44%	-	-	benign(0)	tolerated(0.49)	neutral(0.011)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DGKH	160851	genome.wustl.edu	37	13	42742661	42742661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178009.2	+1	reviewed	p.D402N	1.000	502	0%	284	33.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DAGK_cat,HMMSmart_SM00046
AKAP11	11215	genome.wustl.edu	37	13	42877036	42877036	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016248.2	+1	reviewed	p.K1385T	0.865	149	0%	76	43.4%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
TNFSF11	8600	genome.wustl.edu	37	13	43174929	43174929	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003701.3	+1	reviewed	p.E143	0.998	294	0%	126	31%	-	-	-	-	-	NULL
EPSTI1	94240	genome.wustl.edu	37	13	43528124	43528124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002264.1	-1	validated	p.E175*	1.000	707	0%	359	12.8%	-	-	-	-	-	NULL
LACC1	144811	genome.wustl.edu	37	13	44456392	44456392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128303.1	+1	validated	p.L212F	1.000	285	0%	140	38.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cu-oxidase_4,superfamily_CNF1/YfiH-like putative cysteine hydrolases
LACC1	144811	genome.wustl.edu	37	13	44464275	44464275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128303.1	+1	validated	p.L387F	1.000	214	0%	128	31.2%	-	-	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	HMMPfam_Cu-oxidase_4,superfamily_CNF1/YfiH-like putative cysteine hydrolases
KIAA1704	55425	genome.wustl.edu	37	13	45578515	45578515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018559.2	+1	predicted	p.S55Y	0.998	239	0%	117	39.3%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
FAM194B	220081	genome.wustl.edu	37	13	46170615	46170615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182542.2	-1	predicted	p.L176I	0.072	756	0%	390	26.7%	-	-	possibly_damaging(0.875)	deleterious(0.03)	deleterious(0.705)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46543638	46543638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015070.3	-1	validated	p.S1014F	1.000	485	0.2%	296	40.9%	-	-	unknown(0)	deleterious(0)	-	NULL
CPB2	1361	genome.wustl.edu	37	13	46627896	46627896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001872.3	-1	reviewed	p.D375E	0.995	244	0%	135	34.8%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPB2	1361	genome.wustl.edu	37	13	46658398	46658398	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001872.3	-1	reviewed	p.V77	0.007	388	0%	206	36.9%	-	-	-	-	-	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
KIAA0226L	80183	genome.wustl.edu	37	13	46924411	46924411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025113.2	-1	validated	p.S469L	1.000	129	0%	111	36.9%	-	-	benign(0.103)	tolerated(0.1)	neutral(0.294)	NULL
LRCH1	23143	genome.wustl.edu	37	13	47315785	47315785	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015116.2	+1	reviewed	p.L663	1.000	297	0%	228	34.6%	-	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
LRCH1	23143	genome.wustl.edu	37	13	47324716	47324716	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311191	+1	known	p.G674	1.000	273	0%	157	32.5%	-	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
HTR2A	3356	genome.wustl.edu	37	13	47409526	47409526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000621.3	-1	reviewed	p.S288P	1.000	173	0%	92	32.6%	-	-	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SUCLA2	8803	genome.wustl.edu	37	13	48563108	48563108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003850.2	-1	reviewed	p.D94Y	1.000	201	0%	89	19.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-grasp_2,superfamily_Glutathione synthetase ATP-binding domain-like
RB1	5925	genome.wustl.edu	37	13	48951075	48951075	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000321.2	+1	reviewed	p.E413*	0.999	306	0.3%	127	37%	-	-	-	-	-	HMMPfam_RB_A,superfamily_Cyclin-like
RB1	5925	genome.wustl.edu	37	13	48955517	48955517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000321.2	+1	reviewed	p.E545*	1.000	180	0%	100	27%	-	-	-	-	-	HMMPfam_RB_A,superfamily_Cyclin-like
CDADC1	81602	genome.wustl.edu	37	13	49841800	49841800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030911.2	+1	validated	p.F202S	1.000	272	0%	107	37.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cytidine deaminase-like
CDADC1	81602	genome.wustl.edu	37	13	49842068	49842068	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030911.2	+1	validated	p.P291	1.000	160	0.6%	71	39.4%	-	-	-	-	-	NULL
CDADC1	81602	genome.wustl.edu	37	13	49865882	49865882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030911.2	+1	validated	p.G512R	0.191	190	0%	98	41.8%	-	-	possibly_damaging(0.869)	deleterious(0)	deleterious(0.782)	NULL
CAB39L	81617	genome.wustl.edu	37	13	49924992	49924992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079670.1	-1	validated	p.R151Q	1.000	187	0%	98	31.6%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Mo25,superfamily_ARM-type_fold
CAB39L	81617	genome.wustl.edu	37	13	49933933	49933933	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079670.1	-1	validated	p.I104	1.000	283	0%	134	33.6%	-	-	-	-	-	HMMPfam_Mo25,superfamily_ARM-type_fold
SETDB2	83852	genome.wustl.edu	37	13	50050985	50050985	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031915.2	+1	validated	p.E239*	0.999	251	0%	154	35.1%	-	-	-	-	-	superfamily_SET domain
RCBTB1	55213	genome.wustl.edu	37	13	50115896	50115896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018191.3	-1	reviewed	p.D414N	1.000	238	0%	113	37.2%	-	-	benign(0.004)	tolerated(0.25)	neutral(0.037)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
RCBTB1	55213	genome.wustl.edu	37	13	50115950	50115950	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018191.3	-1	reviewed	p.R396*	1.000	215	0%	96	39.6%	-	-	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
KPNA3	3839	genome.wustl.edu	37	13	50296165	50296165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002267.3	-1	reviewed	p.R218W	1.000	244	0.4%	130	13.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
KPNA3	3839	genome.wustl.edu	37	13	50306552	50306552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002267.3	-1	reviewed	p.S113Y	1.000	210	0%	86	38.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
SPRYD7	57213	genome.wustl.edu	37	13	50488376	50488376	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_023351.1	-1	validated	NULL	0.094	231	0%	122	35.2%	-	-	-	-	-	-
SPRYD7	57213	genome.wustl.edu	37	13	50488480	50488480	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_023351.1	-1	validated	NULL	0.820	50	0%	21	47.6%	-	-	-	-	-	-
RNASEH2B	79621	genome.wustl.edu	37	13	51530597	51530597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024570.2	+1	reviewed	p.I309T	0.037	121	0%	37	45.9%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
FAM124A	220108	genome.wustl.edu	37	13	51855369	51855369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145019.2	+1	predicted	p.D576N	0.710	94	0%	66	31.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SERPINE3	647174	genome.wustl.edu	37	13	51929237	51929237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101320.1	+1	validated	p.D320N	0.982	304	0%	153	41.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
INTS6	26512	genome.wustl.edu	37	13	52025298	52025298	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012141.2	-1	reviewed	p.E68*	1.000	292	0%	154	42.9%	-	-	-	-	-	superfamily_vWA-like
WDFY2	115825	genome.wustl.edu	37	13	52332385	52332385	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052950.3	+1	reviewed	p.F374	0.999	295	0%	180	37.8%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ATP7B	540	genome.wustl.edu	37	13	52548655	52548655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000053.2	-1	reviewed	p.R234I	0.000	89	0%	65	50.8%	-	-	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	NULL
NEK5	341676	genome.wustl.edu	37	13	52660497	52660497	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199289.1	-1	provisional	p.E465D	1.000	629	0%	304	38.5%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
THSD1	55901	genome.wustl.edu	37	13	52971560	52971560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018676.3	-1	reviewed	p.K276N	1.000	164	0%	105	11.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
THSD1	55901	genome.wustl.edu	37	13	52971724	52971724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018676.3	-1	reviewed	p.L222I	0.009	119	0%	95	25.3%	-	-	possibly_damaging(0.919)	tolerated(0.16)	neutral(0.429)	NULL
LECT1	11061	genome.wustl.edu	37	13	53313828	53313828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007015.2	-1	reviewed	p.E3D	0.699	342	0%	224	36.2%	-	-	benign(0.018)	tolerated(0.46)	neutral(0.013)	NULL
PCDH17	27253	genome.wustl.edu	37	13	58207043	58207043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.E121D	0.995	152	0%	65	43.1%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58207290	58207290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.E204K	1.000	33	0%	20	40%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58209032	58209032	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.N784	1.000	144	0%	102	34.3%	-	-	-	-	-	NULL
LOC341689	341689	genome.wustl.edu	37	13	59103912	59103912	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017487.3	+1	model	NULL	0.344	74	0%	32	15.6%	-	-	-	-	-	-
LOC341689	341689	genome.wustl.edu	37	13	59103947	59103947	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017487.3	+1	model	NULL	0.116	65	0%	20	35%	-	-	-	-	-	-
DIAPH3	81624	genome.wustl.edu	37	13	60240931	60240931	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042517.1	-1	validated	p.I1123	1.000	410	0%	211	35.1%	-	-	-	-	-	NULL
TDRD3	81550	genome.wustl.edu	37	13	61102642	61102642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030794.2	+1	validated	p.R335H	1.000	163	0%	57	42.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TDRD3	81550	genome.wustl.edu	37	13	61103031	61103031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030794.2	+1	validated	p.A465T	0.985	53	0%	26	19.2%	-	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
PCDH9	5101	genome.wustl.edu	37	13	67800080	67800080	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203487.2	-1	reviewed	p.F831	0.938	214	0%	151	40.4%	-	-	-	-	-	HMMPfam_Protocadherin
PCDH9	5101	genome.wustl.edu	37	13	67801427	67801427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203487.2	-1	reviewed	p.K382N	1.000	251	0%	134	32.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDH9	5101	genome.wustl.edu	37	13	67802096	67802096	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203487.2	-1	reviewed	p.S159	1.000	281	0%	120	37.5%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
KLHL1	57626	genome.wustl.edu	37	13	70371056	70371056	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020866.2	-1	validated	p.L485	0.978	433	0%	247	39.3%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
DACH1	1602	genome.wustl.edu	37	13	72440792	72440792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080759.4	-1	reviewed	p.S39Y	1.000	174	0%	41	24.4%	-	-	unknown(0)	deleterious(0.01)	-	NULL
MZT1	440145	genome.wustl.edu	37	13	73293130	73293130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001071775.2	-1	validated	p.S62L	0.954	233	0.4%	104	28.8%	-	-	benign(0.141)	tolerated(0.42)	neutral(0.026)	NULL
BORA	79866	genome.wustl.edu	37	13	73305524	73305524	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024808.2	+1	validated	p.R87*	1.000	314	0%	158	32.3%	-	-	-	-	-	NULL
DIS3	22894	genome.wustl.edu	37	13	73350210	73350210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014953.3	-1	validated	p.K225N	0.991	227	0%	150	37.3%	-	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
PIBF1	10464	genome.wustl.edu	37	13	73409469	73409469	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006346.2	+1	validated	p.R396*	1.000	193	0%	66	40.9%	-	-	-	-	-	NULL
KLF5	688	genome.wustl.edu	37	13	73636501	73636501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001730.3	+1	reviewed	p.S255F	1.000	170	0%	88	35.2%	-	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75876395	75876395	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014832.2	-1	validated	p.A965	0.034	367	0.3%	203	37.4%	-	-	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D4	9882	genome.wustl.edu	37	13	75936335	75936335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014832.2	-1	validated	p.D303Y	1.000	65	0%	48	41.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
TBC1D4	9882	genome.wustl.edu	37	13	76055663	76055663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014832.2	-1	validated	p.E81*	1.000	22	0%	33	36.4%	-	-	-	-	-	HMMSmart_SM00462,superfamily_PH domain-like
LMO7	4008	genome.wustl.edu	37	13	76379648	76379648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.E83D	1.000	252	0%	110	15.5%	-	-	benign(0.143)	deleterious(0.03)	neutral(0.377)	NULL
LMO7	4008	genome.wustl.edu	37	13	76381977	76381977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.R287C	1.000	135	0%	69	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LMO7	4008	genome.wustl.edu	37	13	76383301	76383301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.K410R	1.000	706	0%	236	35.6%	-	-	probably_damaging(0.969)	deleterious(0.04)	deleterious(0.760)	NULL
LMO7	4008	genome.wustl.edu	37	13	76393553	76393553	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.R464*	0.998	177	0%	46	26.1%	-	-	-	-	-	NULL
LMO7	4008	genome.wustl.edu	37	13	76407271	76407271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.P779T	0.805	471	0%	210	16.2%	-	-	benign(0.104)	tolerated(0.55)	neutral(0.015)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
CLN5	1203	genome.wustl.edu	37	13	77574960	77574960	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006493.2	+1	reviewed	p.I360M	0.999	100	0%	50	38%	-	-	probably_damaging(0.983)	tolerated(0.12)	deleterious(0.690)	NULL
FBXL3	26224	genome.wustl.edu	37	13	77581627	77581627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012158.2	-1	reviewed	p.Y314H	1.000	360	0%	184	40.8%	-	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	superfamily_SSF52047
MYCBP2	23077	genome.wustl.edu	37	13	77625255	77625255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.R4562C	1.000	176	0%	67	29.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77651414	77651414	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.R3827*	1.000	540	0%	291	34%	-	-	-	-	-	superfamily_Galactose-binding domain-like
MYCBP2	23077	genome.wustl.edu	37	13	77739406	77739406	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	e42+2	1.000	277	0.4%	123	36.6%	-	-	-	-	-	-
MYCBP2	23077	genome.wustl.edu	37	13	77844161	77844161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.R371I	1.000	277	0%	146	37.7%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77862331	77862331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.E149K	1.000	267	0%	168	23.8%	-	-	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	NULL
SCEL	8796	genome.wustl.edu	37	13	78191945	78191945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144777.2	+1	validated	p.D507N	0.893	374	0%	156	35.9%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
SCEL	8796	genome.wustl.edu	37	13	78214825	78214825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144777.2	+1	validated	p.R618K	1.000	274	0%	128	25.8%	-	-	benign(0.002)	tolerated(0.58)	neutral(0.005)	NULL
EDNRB	1910	genome.wustl.edu	37	13	78492685	78492685	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000115.2	-1	reviewed	p.C8	0.058	56	0%	48	45.8%	-	-	-	-	-	NULL
POU4F1	5457	genome.wustl.edu	37	13	79175699	79175699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006237.3	-1	validated	p.E371K	1.000	116	0%	88	37.5%	-	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SLITRK1	114798	genome.wustl.edu	37	13	84453686	84453686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052910.1	-1	reviewed	p.D653N	1.000	149	0%	88	39.8%	-	-	possibly_damaging(0.767)	tolerated(0.14)	deleterious(0.534)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84454031	84454031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052910.1	-1	reviewed	p.V538L	1.000	111	0%	82	39%	-	-	benign(0.018)	tolerated(0.15)	neutral(0.241)	HMMSmart_LRRCT,superfamily_SSF52058
SLITRK1	114798	genome.wustl.edu	37	13	84454671	84454671	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052910.1	-1	reviewed	p.A324	0.521	228	0%	163	36.8%	-	-	-	-	-	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84455150	84455150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052910.1	-1	reviewed	p.L165I	1.000	109	0%	46	15.2%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
SLITRK6	84189	genome.wustl.edu	37	13	86369411	86369411	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032229.2	-1	validated	p.T411	0.995	203	0%	91	37.4%	-	-	-	-	-	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
SLITRK6	84189	genome.wustl.edu	37	13	86369971	86369971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032229.2	-1	validated	p.D225Y	1.000	89	0%	64	32.8%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00082,superfamily_L domain-like
DCT	1638	genome.wustl.edu	37	13	95092216	95092216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129889.1	-1	validated	p.R532Q	0.305	301	0%	144	38.2%	-	-	benign(0.222)	tolerated(0.2)	neutral(0.071)	NULL
TGDS	23483	genome.wustl.edu	37	13	95246143	95246143	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014305.2	-1	validated	p.V35	0.933	215	0%	122	27%	-	-	-	-	-	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
GPR180	160897	genome.wustl.edu	37	13	95257710	95257710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_180989.4	+1	reviewed	p.L71F	1.000	240	0%	143	34.3%	-	-	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	NULL
GPR180	160897	genome.wustl.edu	37	13	95264605	95264605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_180989.4	+1	reviewed	p.E156K	1.000	236	0%	100	46%	-	-	possibly_damaging(0.923)	tolerated(0.22)	neutral(0.414)	HMMPfam_GpcrRhopsn4
ABCC4	10257	genome.wustl.edu	37	13	95725484	95725484	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005845.3	-1	reviewed	p.R998*	0.947	232	0%	122	19.7%	-	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
CLDN10	9071	genome.wustl.edu	37	13	96086229	96086229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182848.3	+1	reviewed	p.W48R	1.000	366	0%	211	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN
DZIP1	22873	genome.wustl.edu	37	13	96242593	96242593	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198968.2	-1	validated	p.R595*	0.997	447	0%	277	40.8%	-	-	-	-	-	NULL
DZIP1	22873	genome.wustl.edu	37	13	96264414	96264414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198968.2	-1	validated	p.E397D	1.000	334	0%	214	36.4%	-	-	probably_damaging(0.998)	tolerated(0.44)	deleterious(0.487)	NULL
OXGR1	27199	genome.wustl.edu	37	13	97639571	97639571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080818.3	-1	reviewed	p.R148Q	0.011	200	0%	114	40.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MBNL2	10150	genome.wustl.edu	37	13	97999103	97999103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144778.2	+1	reviewed	p.D196N	1.000	79	0%	68	11.8%	-	-	possibly_damaging(0.898)	tolerated(0.1)	deleterious(0.641)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
IPO5	3843	genome.wustl.edu	37	13	98655160	98655160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002271.4	+1	reviewed	p.Q474K	1.000	248	0%	156	32.1%	-	-	benign(0.025)	deleterious(0.01)	neutral(0.407)	HMMPfam_HEAT,superfamily_ARM-type_fold
FARP1	10160	genome.wustl.edu	37	13	99045956	99045956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005766.2	+1	reviewed	p.S383L	0.770	239	0%	108	39.8%	-	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
STK24	8428	genome.wustl.edu	37	13	99134569	99134569	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003576.3	-1	validated	p.K106*	1.000	132	0%	76	40.8%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DOCK9	23348	genome.wustl.edu	37	13	99457401	99457401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357329	-1	known	p.F1874L	1.000	503	0%	277	15.9%	-	-	benign(0.208)	deleterious(0.01)	neutral(0.426)	NULL
GPR18	2841	genome.wustl.edu	37	13	99907672	99907672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098200.1	-1	validated	p.T152M	0.664	340	0%	205	32.7%	-	-	possibly_damaging(0.742)	deleterious(0.04)	deleterious(0.621)	HMMPfam_7tm_1,superfamily_SSF81321
GPR183	1880	genome.wustl.edu	37	13	99947583	99947583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004951.4	-1	reviewed	p.R273C	0.000	136	0%	67	52.2%	-	-	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMPfam_7tm_1,superfamily_SSF81321
UBAC2	337867	genome.wustl.edu	37	13	99992656	99992656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144072.1	+1	validated	p.S215Y	0.997	148	0%	76	40.8%	-	-	possibly_damaging(0.918)	deleterious(0.02)	deleterious(0.752)	NULL
CLYBL	171425	genome.wustl.edu	37	13	100517232	100517232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416504	+1	known	p.S151Y	0.939	149	0%	100	35%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
CLYBL	171425	genome.wustl.edu	37	13	100518531	100518531	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206808.2	+1	validated	p.R204C	0.998	180	0%	108	43.5%	-	-	-	-	-	NULL
CLYBL	171425	genome.wustl.edu	37	13	100543639	100543639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339105	+1	known	p.T332M	1.000	261	0%	144	29.2%	-	-	possibly_damaging(0.771)	tolerated(0.09)	deleterious(0.583)	NULL
PCCA	5095	genome.wustl.edu	37	13	100982923	100982923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000282.3	+1	reviewed	p.K513R	1.000	329	0%	139	33.8%	-	-	probably_damaging(0.979)	tolerated(0.17)	deleterious(0.481)	superfamily_Rudmnt_hyb_motif
NALCN	259232	genome.wustl.edu	37	13	101757261	101757261	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052867.2	-1	validated	p.K874Q	1.000	587	0%	286	32.2%	-	-	benign(0.184)	tolerated(0.55)	neutral(0.024)	superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	102047642	102047642	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052867.2	-1	validated	p.F61	1.000	135	0%	76	32.9%	-	-	-	-	-	superfamily_Voltage-gated potassium channels
TPP2	7174	genome.wustl.edu	37	13	103249412	103249412	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003291.2	+1	reviewed	p.E8	1.000	31	0%	26	34.6%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103384608	103384608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.L5995I	0.876	311	0%	156	35.9%	-	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103385307	103385307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.L5762M	0.003	333	0%	187	23%	-	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103385963	103385963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.T5543N	0.001	290	0%	138	31.2%	-	-	probably_damaging(0.997)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103386390	103386390	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.F5401V	0.806	265	0%	138	38.4%	-	-	probably_damaging(0.987)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103387552	103387552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.K5013N	0.013	171	0%	109	34.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103389475	103389475	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.A4372	0.060	403	0%	177	14.7%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103389561	103389561	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.E4344*	0.002	184	0.5%	130	10%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103389747	103389747	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.L4282V	0.000	429	0%	247	37.7%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103391066	103391066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.R3923I	0.000	490	0%	257	38.5%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103391555	103391555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.R3760Q	0.000	305	0%	137	33.6%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103392352	103392352	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.R3494	0.011	322	0%	169	30.2%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103393025	103393025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.S3270Y	0.004	324	0%	175	31.4%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103393853	103393853	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.S2994*	0.002	133	0%	67	31.3%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394047	103394047	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.G2929	0.000	110	0%	71	25.4%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394465	103394465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.S2790N	0.000	331	0%	213	40.8%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103399028	103399028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.T1269I	0.000	340	0%	185	36.8%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103400097	103400097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.K913Q	0.002	444	0%	268	23.9%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103400690	103400690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.A715V	0.000	341	0%	185	39.5%	-	-	-	-	-	NULL
TEX30	93081	genome.wustl.edu	37	13	103419754	103419754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138779.3	-1	validated	p.R125W	1.000	165	0%	99	40.4%	-	-	probably_damaging(0.994)	tolerated(0.16)	deleterious(0.512)	superfamily_SSF53474
TEX30	93081	genome.wustl.edu	37	13	103421728	103421728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138779.3	-1	validated	p.F60C	1.000	144	0%	74	37.8%	-	-	possibly_damaging(0.506)	deleterious(0.01)	deleterious(0.575)	superfamily_SSF53474
BIVM	54841	genome.wustl.edu	37	13	103460041	103460041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017693.3	+1	validated	p.E142K	1.000	57	0%	25	52%	-	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
ERCC5	2073	genome.wustl.edu	37	13	103528229	103528229	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000123.2	+1	reviewed	p.A1179	0.000	83	0%	31	22.6%	-	-	-	-	-	NULL
FAM155A	728215	genome.wustl.edu	37	13	108518390	108518390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080396.2	-1	validated	p.E185D	0.918	35	0%	16	37.5%	-	-	benign(0.003)	tolerated(0.49)	neutral(0.011)	NULL
FAM155A	728215	genome.wustl.edu	37	13	108518867	108518867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080396.2	-1	validated	p.E26D	1.000	118	0%	54	20.4%	-	-	benign(0.236)	tolerated(0.58)	neutral(0.029)	NULL
ABHD13	84945	genome.wustl.edu	37	13	108881742	108881742	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032859.2	+1	validated	p.K59T	1.000	300	0%	166	31.9%	-	-	possibly_damaging(0.799)	tolerated(0.29)	neutral(0.330)	superfamily_alpha/beta-Hydrolases
TNFSF13B	10673	genome.wustl.edu	37	13	108922687	108922687	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006573.3	+1	reviewed	e2-1	0.000	213	0%	106	28.3%	-	-	-	-	-	-
TNFSF13B	10673	genome.wustl.edu	37	13	108955841	108955841	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006573.3	+1	reviewed	p.I212L	0.993	482	0%	218	36.2%	-	-	possibly_damaging(0.674)	deleterious(0.01)	deleterious(0.645)	HMMPfam_TNF,superfamily_TNF-like
COL4A1	1282	genome.wustl.edu	37	13	110813658	110813658	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001845.4	-1	reviewed	p.I1507M	1.000	243	0%	170	30.6%	-	-	unknown(0)	tolerated(0.36)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
CARS2	79587	genome.wustl.edu	37	13	111296748	111296748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024537.2	-1	validated	p.S467Y	1.000	195	0%	71	47.9%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_tRNAsyn_1a_bind
ARHGEF7	8874	genome.wustl.edu	37	13	111896601	111896601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113511.1	+1	reviewed	p.F325V	1.000	162	0%	77	36.4%	-	-	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TUBGCP3	10426	genome.wustl.edu	37	13	113174225	113174225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006322.4	-1	provisional	p.R619Q	0.394	219	0%	93	41.9%	-	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Spc97_Spc98
ATP11A	23250	genome.wustl.edu	37	13	113479746	113479746	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418678	+1	known	p.R267*	1.000	163	0%	90	13.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATP11A	23250	genome.wustl.edu	37	13	113508715	113508715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032189.3	+1	reviewed	p.R705H	0.828	57	0%	42	38.1%	-	-	benign(0.061)	tolerated(0.42)	neutral(0.018)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
MCF2L	23263	genome.wustl.edu	37	13	113742683	113742683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112732.1	+1	validated	p.R968W	1.000	172	0%	130	18.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ADPRHL1	113622	genome.wustl.edu	37	13	114077254	114077254	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138430.3	-1	validated	p.F316	0.123	88	0%	70	17.1%	-	-	-	-	-	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase
TMCO3	55002	genome.wustl.edu	37	13	114154395	114154395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017905.4	+1	validated	p.Q249H	0.998	349	0%	169	13.6%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
FAM70B	348013	genome.wustl.edu	37	13	114472080	114472080	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182614.2	+1	provisional	p.G67*	1.000	850	0.1%	400	37%	-	-	-	-	-	NULL
GAS6	2621	genome.wustl.edu	37	13	114524939	114524939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000820.2	-1	reviewed	p.G625D	0.997	5	0.000	7	0.714	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
RASA3	22821	genome.wustl.edu	37	13	114751211	114751211	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007368.2	-1	reviewed	p.F768	0.195	156	0%	121	33.9%	-	-	-	-	-	NULL
RASA3	22821	genome.wustl.edu	37	13	114793341	114793341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007368.2	-1	reviewed	p.T171M	0.995	185	0%	101	16.8%	-	-	possibly_damaging(0.908)	deleterious(0.01)	deleterious(0.767)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CDC16	8881	genome.wustl.edu	37	13	115024817	115024817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078645.1	+1	reviewed	p.T420A	1.000	224	0%	118	37.3%	-	-	benign(0)	tolerated(0.73)	neutral(0.002)	HMMSmart_SM00028,superfamily_TPR-like
UPF3A	65110	genome.wustl.edu	37	13	115057234	115057234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023011.2	+1	reviewed	p.Q271H	0.910	272	0.7%	68	41.2%	-	-	benign(0.026)	tolerated(0.13)	neutral(0.254)	NULL
OR11H12	440153	genome.wustl.edu	37	14	19377917	19377917	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013354.1	+1	provisional	p.S108	0.127	845	0%	366	16.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR11H2	79334	genome.wustl.edu	37	14	20181547	20181547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334072	-1	known	p.L177I	0.001	1876	0.1%	942	13.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4Q3	441669	genome.wustl.edu	37	14	20215773	20215773	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172194.1	+1	provisional	p.F63V	0.995	842	0%	430	16.7%	-	-	benign(0.422)	deleterious(0)	deleterious(0.582)	HMMPfam_7tm_1,superfamily_SSF81321
OR4M1	441670	genome.wustl.edu	37	14	20248896	20248896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005500.1	+1	provisional	p.R139C	0.001	1748	0.2%	964	14.1%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4N2	390429	genome.wustl.edu	37	14	20295910	20295910	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004723.1	+1	provisional	p.L101	0.998	914	0%	501	12.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4N2	390429	genome.wustl.edu	37	14	20296100	20296100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004723.1	+1	provisional	p.R165C	0.000	685	0%	485	14.4%	-	-	benign(0.039)	tolerated(0.1)	neutral(0.288)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K2	390431	genome.wustl.edu	37	14	20344930	20344930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005501.1	+1	provisional	p.F168L	1.000	1278	0%	754	17.4%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4K2	390431	genome.wustl.edu	37	14	20345233	20345233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005501.1	+1	provisional	p.K269N	0.086	923	0%	444	16.2%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4K17	390436	genome.wustl.edu	37	14	20586423	20586423	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004715.1	+1	provisional	p.I286	0.011	299	0%	179	27.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4N5	390437	genome.wustl.edu	37	14	20612088	20612088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004724.1	+1	provisional	p.N65S	0.351	636	0%	336	13.4%	-	-	benign(0.333)	tolerated(0.18)	neutral(0.161)	HMMPfam_7tm_1,superfamily_SSF81321
OR4N5	390437	genome.wustl.edu	37	14	20612639	20612639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004724.1	+1	provisional	p.L249I	1.000	311	0%	195	36.4%	-	-	benign(0.043)	tolerated(0.07)	neutral(0.322)	HMMPfam_7tm_1,superfamily_SSF81321
OR11H4	390442	genome.wustl.edu	37	14	20711236	20711236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004479.1	+1	provisional	p.L96I	0.949	218	0%	128	35.9%	-	-	possibly_damaging(0.761)	tolerated(0.09)	deleterious(0.579)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR11H4	390442	genome.wustl.edu	37	14	20711484	20711484	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004479.1	+1	provisional	p.F178	1.000	393	0%	217	33.2%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PARP2	10038	genome.wustl.edu	37	14	20823033	20823033	+	Missense_Mutation	SNP	C	C	T	rs140156644	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005484.3	+1	reviewed	p.R290W	1.000	234	0%	127	37.8%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_PARP_reg,superfamily_Domain of poly(ADP-ribose) polymerase
PARP2	10038	genome.wustl.edu	37	14	20824756	20824756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005484.3	+1	reviewed	p.L426I	1.000	473	0%	273	32.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PARP,superfamily_ADP-ribosylation
TEP1	7011	genome.wustl.edu	37	14	20836632	20836632	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007110.4	-1	reviewed	p.D2616	0.027	81	0%	49	30.6%	-	-	-	-	-	superfamily_WD40 repeat-like
TEP1	7011	genome.wustl.edu	37	14	20863770	20863770	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007110.4	-1	reviewed	p.S589	0.549	247	0%	159	39%	-	-	-	-	-	HMMPfam_TROVE
OSGEP	55644	genome.wustl.edu	37	14	20917168	20917168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017807.2	-1	validated	p.S171Y	1.000	679	0%	245	38.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Peptidase_M22,superfamily_SSF53067
RNASE9	390443	genome.wustl.edu	37	14	21025042	21025042	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001673.3	-1	provisional	p.E63*	0.000	540	0%	263	39.5%	-	-	-	-	-	superfamily_RNase A-like
EDDM3B	64184	genome.wustl.edu	37	14	21238699	21238699	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022360.4	+1	validated	p.D130	0.047	165	0%	88	30.7%	-	-	-	-	-	superfamily_RNaseA
RNASE7	84659	genome.wustl.edu	37	14	21511175	21511175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032572.3	+1	validated	p.F8L	0.010	172	0.6%	115	37.4%	-	-	benign(0.014)	tolerated(0.08)	neutral(0.300)	NULL
ZNF219	51222	genome.wustl.edu	37	14	21560660	21560660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101672.1	-1	validated	p.E266K	0.999	23	0%	23	26.1%	-	-	possibly_damaging(0.666)	deleterious(0.04)	deleterious(0.585)	NULL
RPGRIP1	57096	genome.wustl.edu	37	14	21796715	21796715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020366.3	+1	reviewed	p.R1010G	0.634	273	0%	114	28.9%	-	-	possibly_damaging(0.929)	tolerated(0.12)	deleterious(0.637)	NULL
SUPT16H	11198	genome.wustl.edu	37	14	21830433	21830433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007192.3	-1	reviewed	p.F572L	1.000	188	0%	102	32.4%	-	-	possibly_damaging(0.69)	deleterious(0.04)	deleterious(0.596)	HMMPfam_SPT16
METTL3	56339	genome.wustl.edu	37	14	21967927	21967927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019852.3	-1	reviewed	p.E442*	1.000	377	0%	170	33.5%	-	-	-	-	-	HMMPfam_MT-A70
SALL2	6297	genome.wustl.edu	37	14	21992302	21992302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005407.1	-1	validated	p.K520N	0.924	100	0%	68	33.8%	-	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	NULL
ABHD4	63874	genome.wustl.edu	37	14	23079840	23079840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022060.2	+1	validated	p.D339N	0.028	179	0%	96	26%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	superfamily_SSF53474
PRMT5	10419	genome.wustl.edu	37	14	23397390	23397390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006109.3	-1	validated	p.S87Y	1.000	192	0%	97	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AJUBA	84962	genome.wustl.edu	37	14	23442759	23442759	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032876.4	-1	validated	p.S504R	0.998	170	0%	98	35.7%	-	-	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	HMMPfam_LIM,HMMSmart_LIM
C14orf93	60686	genome.wustl.edu	37	14	23456520	23456520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130706.1	-1	validated	p.E507D	1.000	269	0%	165	32.7%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
PSMB5	5693	genome.wustl.edu	37	14	23502697	23502697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002797.3	-1	reviewed	p.N129D	1.000	124	0%	108	31.5%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ACIN1	22985	genome.wustl.edu	37	14	23549591	23549591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014977.3	-1	validated	p.S376Y	0.224	275	0%	205	39%	-	-	possibly_damaging(0.491)	deleterious(0)	deleterious(0.608)	NULL
HOMEZ	57594	genome.wustl.edu	37	14	23745574	23745574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020834.2	-1	validated	p.T288I	1.000	327	0%	174	12.6%	-	-	benign(0.258)	tolerated(0.36)	neutral(0.047)	NULL
MYH6	4624	genome.wustl.edu	37	14	23863430	23863430	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002471.3	-1	validated	p.S844	0.904	369	0%	271	38%	-	-	-	-	-	NULL
MIR208B	100126336	genome.wustl.edu	37	14	23887231	23887231	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401172	-1	known	NULL	0.994	157	0%	88	37.5%	-	-	-	-	-	-
MYH7	4625	genome.wustl.edu	37	14	23894232	23894232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.D809Y	1.000	198	0%	132	35.6%	-	-	benign(0.061)	deleterious(0.02)	neutral(0.387)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23900677	23900677	+	Missense_Mutation	SNP	C	C	T	rs3218713	byCluster	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.R249Q	1.000	244	0%	143	28.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23902377	23902377	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.I87	0.997	424	0%	308	15.6%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHRS2	10202	genome.wustl.edu	37	14	24109027	24109027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182908.4	+1	validated	p.D115N	0.971	122	0%	83	33.7%	-	-	probably_damaging(0.989)	tolerated(0.1)	deleterious(0.726)	HMMPfam_adh_short,superfamily_NAD(P)-bd
DHRS4L1	728635	genome.wustl.edu	37	14	24511937	24511937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082488.1	+1	provisional	p.S116L	0.002	466	0%	251	37.5%	-	-	unknown(0)	deleterious(0.02)	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
DHRS4L1	728635	genome.wustl.edu	37	14	24517579	24517579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082488.1	+1	provisional	p.P178L	0.006	646	0%	393	36.1%	-	-	possibly_damaging(0.449)	deleterious(0.04)	deleterious(0.496)	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
LRRC16B	90668	genome.wustl.edu	37	14	24524295	24524295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138360.3	+1	validated	p.A161T	1.000	486	0%	250	29.6%	-	-	unknown(0)	deleterious(0.05)	-	superfamily_RNI-like
PCK2	5106	genome.wustl.edu	37	14	24572815	24572815	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004563.2	+1	reviewed	p.K522T	1.000	110	0%	83	20.5%	-	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	HMMPfam_PEPCK,superfamily_PEP carboxykinase-like
RNF31	55072	genome.wustl.edu	37	14	24619440	24619440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017999.4	+1	validated	p.R327Q	1.000	251	0%	121	33.9%	-	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	superfamily_Znf265 first zinc-finger domain
RNF31	55072	genome.wustl.edu	37	14	24620515	24620515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017999.4	+1	validated	p.R555Q	1.000	215	0.5%	171	35.7%	-	-	benign(0.341)	deleterious(0.02)	deleterious(0.490)	NULL
GMPR2	51292	genome.wustl.edu	37	14	24707781	24707781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000348719	+1	known	p.F343V	0.015	146	0%	81	39.5%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_IMPDH,superfamily_SSF51412
TINF2	26277	genome.wustl.edu	37	14	24711098	24711098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099274.1	-1	reviewed	p.A99T	0.884	108	0%	109	33.9%	-	-	benign(0.001)	tolerated(0.93)	-	NULL
TGM1	7051	genome.wustl.edu	37	14	24731326	24731326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000359.2	-1	reviewed	p.R78Q	0.007	29	0%	33	42.4%	-	-	possibly_damaging(0.867)	tolerated(0.59)	neutral(0.341)	superfamily_Ig_E-set
DHRS1	115817	genome.wustl.edu	37	14	24760109	24760109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136050.2	-1	reviewed	p.R300C	1.000	303	0%	137	38.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LTB4R2	56413	genome.wustl.edu	37	14	24779967	24779967	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019839.4	+1	validated	p.L64	0.988	24	0%	18	38.9%	-	-	-	-	-	superfamily_SSF81321
LTB4R2	56413	genome.wustl.edu	37	14	24780794	24780794	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019839.4	+1	validated	p.F339	0.995	62	0%	50	30%	-	-	-	-	-	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24878759	24878759	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025081.2	+1	validated	p.E587*	0.012	70	0%	45	13.3%	-	-	-	-	-	NULL
CMA1	1215	genome.wustl.edu	37	14	24977408	24977408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001836.2	-1	reviewed	p.L12I	0.045	133	0%	68	36.8%	-	-	unknown(0)	tolerated(1)	-	NULL
NOVA1	4857	genome.wustl.edu	37	14	26939689	26939689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006491.2	-1	reviewed	p.N176S	0.001	525	0%	268	35.1%	-	-	unknown(0)	-	-	NULL
ENSG00000197358	0	genome.wustl.edu	37	14	28733898	28733898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355069	+1	known	p.L47M	0.092	310	0.3%	154	36.4%	-	-	-	-	-	HMMPfam_BNIP3
PRKD1	5587	genome.wustl.edu	37	14	30107759	30107759	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002742.2	-1	validated	p.N307	1.000	440	0%	253	30.8%	-	-	-	-	-	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
G2E3	55632	genome.wustl.edu	37	14	31061644	31061644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017769.3	+1	validated	p.G118D	0.998	309	0.3%	187	11.8%	-	-	benign(0.033)	tolerated(0.37)	neutral(0.021)	HMMSmart_PHD,PatternScan_ZF_PHD_1
COCH	1690	genome.wustl.edu	37	14	31349850	31349850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135058.1	+1	reviewed	p.R180Q	1.000	343	0%	165	13.9%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COCH	1690	genome.wustl.edu	37	14	31354712	31354712	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135058.1	+1	reviewed	p.I282	0.358	728	0%	388	37.6%	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ENSG00000250370	0	genome.wustl.edu	37	14	31354936	31354936	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503907	-1	known	NULL	0.000	237	0%	147	40.1%	-	-	-	-	-	-
HECTD1	25831	genome.wustl.edu	37	14	31582497	31582497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.R2017I	1.000	118	0%	46	47.8%	-	-	benign(0.072)	deleterious(0.01)	neutral(0.411)	NULL
ARHGAP5	394	genome.wustl.edu	37	14	32561114	32561114	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.V413	1.000	217	0%	83	25.3%	-	-	-	-	-	HMMSmart_SM00441
ARHGAP5	394	genome.wustl.edu	37	14	32563239	32563239	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.R1122*	0.998	79	0%	33	30.3%	-	-	-	-	-	NULL
ARHGAP5	394	genome.wustl.edu	37	14	32624002	32624002	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.E1453*	1.000	212	0%	123	30.9%	-	-	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33014961	33014961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.T368A	0.760	66	0%	29	34.5%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33068685	33068685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.L847I	1.000	266	0%	129	34.9%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00150,superfamily_Spectrin repeat
AKAP6	9472	genome.wustl.edu	37	14	33205067	33205067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.E1117D	1.000	172	0%	49	36.7%	-	-	possibly_damaging(0.797)	deleterious(0)	deleterious(0.744)	HMMSmart_SM00150,superfamily_Spectrin repeat
AKAP6	9472	genome.wustl.edu	37	14	33292209	33292209	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.S1730	0.114	210	0.5%	148	38.5%	-	-	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33293222	33293222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.S2068L	1.000	133	0%	89	24.7%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
NPAS3	64067	genome.wustl.edu	37	14	33525156	33525156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356141	+1	known	p.K32N	1.000	259	0%	132	37.9%	-	-	possibly_damaging(0.903)	deleterious(0.03)	deleterious(0.722)	NULL
SNX6	58533	genome.wustl.edu	37	14	35050779	35050779	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152233.2	-1	reviewed	p.F286	1.000	197	0%	89	33.7%	-	-	-	-	-	HMMPfam_Vps5
BAZ1A	11177	genome.wustl.edu	37	14	35224069	35224069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013448.2	-1	validated	p.R1480S	1.000	385	0%	176	13.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BAZ1A	11177	genome.wustl.edu	37	14	35262020	35262020	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013448.2	-1	validated	p.E491*	1.000	371	0%	183	13.7%	-	-	-	-	-	NULL
SRP54	6729	genome.wustl.edu	37	14	35484023	35484023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003136.3	+1	validated	p.E320D	1.000	414	0%	137	37.2%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	superfamily_Signal peptide-binding domain
PPP2R3C	55012	genome.wustl.edu	37	14	35560282	35560282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017917.2	-1	provisional	p.F369L	1.000	251	0%	148	27%	-	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	superfamily_EF-hand
RALGAPA1	253959	genome.wustl.edu	37	14	36008812	36008812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194301.2	-1	provisional	p.R2063Q	1.000	302	0%	162	40.7%	-	-	possibly_damaging(0.95)	tolerated(0.27)	neutral(0.427)	NULL
BRMS1L	84312	genome.wustl.edu	37	14	36300693	36300693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032352.3	+1	reviewed	p.D74N	1.000	322	0%	149	38.3%	-	-	benign(0.04)	tolerated(0.15)	neutral(0.243)	HMMPfam_Sds3
MBIP	51562	genome.wustl.edu	37	14	36768394	36768394	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359527	-1	known	p.E278*	1.000	696	0%	351	16.2%	-	-	-	-	-	NULL
NKX2-8	26257	genome.wustl.edu	37	14	37051579	37051579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014360.2	-1	provisional	p.R6C	1.000	43	0%	30	20%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SLC25A21	89874	genome.wustl.edu	37	14	37154042	37154042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030631.3	-1	validated	p.A231V	1.000	410	0%	192	29.7%	-	-	possibly_damaging(0.854)	tolerated(0.15)	deleterious(0.570)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
MIPOL1	145282	genome.wustl.edu	37	14	37736219	37736219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138731.5	+1	validated	p.M32I	0.343	288	0%	118	26.3%	-	-	benign(0.036)	tolerated(0.07)	neutral(0.321)	NULL
FOXA1	3169	genome.wustl.edu	37	14	38061432	38061432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004496.2	-1	reviewed	p.A186V	1.000	153	0%	84	39.3%	-	-	possibly_damaging(0.808)	deleterious(0.01)	deleterious(0.710)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
TTC6	319089	genome.wustl.edu	37	14	38295545	38295545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343299.1	+1	model	p.A1435V	0.995	181	0%	111	40.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_TPR-like
CLEC14A	161198	genome.wustl.edu	37	14	38724203	38724203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175060.1	-1	provisional	p.S342Y	0.029	76	0%	34	35.3%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CLEC14A	161198	genome.wustl.edu	37	14	38724258	38724258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175060.1	-1	provisional	p.D324N	0.000	36	0%	20	30%	-	-	benign(0.006)	tolerated(0.97)	-	NULL
MIA2	117153	genome.wustl.edu	37	14	39716612	39716612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054024.3	+1	validated	p.Q278H	0.151	241	0%	129	17.8%	-	-	probably_damaging(0.96)	tolerated(0.05)	deleterious(0.748)	NULL
LRFN5	145581	genome.wustl.edu	37	14	42360920	42360920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152447.3	+1	validated	p.S618L	1.000	323	0%	182	32.4%	-	-	benign(0.014)	tolerated(0.19)	neutral(0.050)	NULL
FSCB	84075	genome.wustl.edu	37	14	44974609	44974609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032135.3	-1	validated	p.L528I	0.027	48	0%	38	26.3%	-	-	possibly_damaging(0.763)	tolerated(0.59)	neutral(0.287)	NULL
FSCB	84075	genome.wustl.edu	37	14	44975723	44975723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032135.3	-1	validated	p.Q156H	1.000	432	0%	224	23.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C14orf28	122525	genome.wustl.edu	37	14	45369824	45369824	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017923.1	+1	validated	p.F62	1.000	132	0%	86	36%	-	-	-	-	-	NULL
C14orf28	122525	genome.wustl.edu	37	14	45369913	45369913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017923.1	+1	validated	p.F92C	1.000	98	0%	50	42%	-	-	possibly_damaging(0.776)	deleterious(0)	deleterious(0.734)	NULL
FAM179B	23116	genome.wustl.edu	37	14	45473352	45473352	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015091.2	+1	validated	p.S809	0.489	200	0%	111	37.8%	-	-	-	-	-	superfamily_ARM repeat
FAM179B	23116	genome.wustl.edu	37	14	45521654	45521654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015091.2	+1	validated	p.K1390N	1.000	204	0%	100	39%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_ARM repeat
FANCM	57697	genome.wustl.edu	37	14	45645046	45645046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020937.2	+1	reviewed	p.R1030Q	0.174	45	0%	17	88.2%	-	-	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
FANCM	57697	genome.wustl.edu	37	14	45645587	45645587	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020937.2	+1	reviewed	p.Q1210	0.002	235	0%	148	29.1%	-	-	-	-	-	NULL
FANCM	57697	genome.wustl.edu	37	14	45645606	45645606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020937.2	+1	reviewed	p.H1217N	0.000	246	0%	139	43.9%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
FANCM	57697	genome.wustl.edu	37	14	45645817	45645817	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020937.2	+1	reviewed	p.K1287T	0.000	206	0%	97	39.2%	-	-	benign(0.011)	tolerated(1)	neutral(0.001)	NULL
MDGA2	161357	genome.wustl.edu	37	14	47342741	47342741	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113498.1	-1	validated	p.R814*	1.000	407	0.2%	197	35.5%	-	-	-	-	-	HMMPfam_MAM,HMMSmart_MAM
DNAAF2	55172	genome.wustl.edu	37	14	50092358	50092358	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018139.2	-1	reviewed	p.E806*	1.000	489	0%	266	34.6%	-	-	-	-	-	NULL
NEMF	9147	genome.wustl.edu	37	14	50298976	50298976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004713.3	-1	validated	p.R252I	1.000	257	0%	172	37.8%	-	-	benign(0.007)	tolerated(0.05)	neutral(0.345)	NULL
SOS2	6655	genome.wustl.edu	37	14	50655256	50655256	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006939.2	-1	validated	p.R225	1.000	184	0%	89	40.4%	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ATP5S	27109	genome.wustl.edu	37	14	50798937	50798937	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000358473	+1	known	p.L228	0.001	509	0%	370	34.9%	-	-	-	-	-	NULL
CDKL1	8814	genome.wustl.edu	37	14	50799072	50799072	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004196.3	-1	reviewed	p.E293*	1.000	867	0%	506	41.1%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
MAP4K5	11183	genome.wustl.edu	37	14	50904246	50904246	+	Silent	SNP	G	G	A	rs191525698	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006575.3	-1	reviewed	p.F610	0.994	387	0%	213	12.7%	-	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
PYGL	5836	genome.wustl.edu	37	14	51372246	51372246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002863.4	-1	reviewed	p.L803R	1.000	480	0%	271	36.9%	-	-	possibly_damaging(0.769)	deleterious(0)	deleterious(0.730)	HMMPfam_Phosphorylase,superfamily_SSF53756
TRIM9	114088	genome.wustl.edu	37	14	51446186	51446186	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015163.5	-1	reviewed	p.N663	1.000	289	0.3%	162	34%	-	-	-	-	-	HMMPfam_SPRY,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449
NID2	22795	genome.wustl.edu	37	14	52505497	52505497	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.F742C	0.992	357	0%	211	37.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00682,superfamily_GFP-like
NID2	22795	genome.wustl.edu	37	14	52534591	52534591	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.A173	0.000	18	0%	11	45.5%	-	-	-	-	-	HMMSmart_SM00539
TXNDC16	57544	genome.wustl.edu	37	14	52955155	52955155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020784.2	-1	validated	p.S345Y	0.996	274	0%	135	16.3%	-	-	benign(0.258)	tolerated(0.27)	neutral(0.060)	NULL
TXNDC16	57544	genome.wustl.edu	37	14	53010216	53010216	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020784.2	-1	validated	p.F20	0.410	250	0%	103	37.9%	-	-	-	-	-	NULL
GPR137C	283554	genome.wustl.edu	37	14	53066907	53066907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099652.1	+1	provisional	p.H189N	1.000	654	0%	327	28.1%	-	-	probably_damaging(0.963)	tolerated(0.14)	deleterious(0.655)	NULL
ERO1L	30001	genome.wustl.edu	37	14	53133109	53133109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014584.1	-1	provisional	p.E205K	1.000	227	0%	134	37.3%	-	-	probably_damaging(1)	tolerated(0.46)	deleterious(0.512)	HMMPfam_ERO1,superfamily_ERO1
DDHD1	80821	genome.wustl.edu	37	14	53513551	53513551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030637.2	-1	validated	p.L852I	1.000	305	0.3%	160	22.5%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_DDHD
DDHD1	80821	genome.wustl.edu	37	14	53518563	53518563	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000323669	-1	known	p.L840	1.000	288	0%	141	42.6%	-	-	-	-	-	HMMPfam_DDHD
DDHD1	80821	genome.wustl.edu	37	14	53539318	53539318	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030637.2	-1	validated	p.D500	1.000	339	0%	125	31.2%	-	-	-	-	-	NULL
CGRRF1	10668	genome.wustl.edu	37	14	55005089	55005089	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006568.2	+1	validated	p.P329	0.057	137	0%	77	44.2%	-	-	-	-	-	NULL
WDHD1	11169	genome.wustl.edu	37	14	55422384	55422384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007086.2	-1	reviewed	p.R982I	0.006	361	0%	208	25%	-	-	possibly_damaging(0.502)	deleterious(0.02)	deleterious(0.550)	superfamily_WD40_like
LGALS3	3958	genome.wustl.edu	37	14	55604109	55604109	+	Silent	SNP	G	G	T	rs78001930	byCluster;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002306.3	+1	reviewed	p.S6	0.985	784	0%	395	38%	-	-	-	-	-	NULL
FBXO34	55030	genome.wustl.edu	37	14	55817179	55817179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017943.3	+1	validated	p.R24I	0.003	161	0%	62	40.3%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FBXO34	55030	genome.wustl.edu	37	14	55817915	55817915	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017943.3	+1	validated	p.V269	0.019	160	0%	86	44.2%	-	-	-	-	-	NULL
KTN1	3895	genome.wustl.edu	37	14	56114761	56114761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079521.1	+1	validated	p.E742D	1.000	213	0%	79	32.9%	-	-	benign(0.023)	tolerated(0.37)	neutral(0.020)	superfamily_Spectrin repeat
KTN1	3895	genome.wustl.edu	37	14	56134017	56134017	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079521.1	+1	validated	p.L1079*	1.000	381	0%	152	40.1%	-	-	-	-	-	NULL
PELI2	57161	genome.wustl.edu	37	14	56755201	56755201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021255.2	+1	validated	p.T119M	1.000	173	0%	104	30.8%	-	-	benign(0.399)	deleterious(0)	deleterious(0.573)	HMMPfam_Pellino
PELI2	57161	genome.wustl.edu	37	14	56757106	56757106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021255.2	+1	validated	p.E210K	1.000	142	0%	84	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pellino
OTX2	5015	genome.wustl.edu	37	14	57268559	57268559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021728.2	-1	reviewed	p.D263G	1.000	330	0%	166	40.4%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
EXOC5	10640	genome.wustl.edu	37	14	57675371	57675371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006544.3	-1	reviewed	p.R695C	1.000	209	0%	99	37.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec10
EXOC5	10640	genome.wustl.edu	37	14	57689054	57689054	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006544.3	-1	reviewed	p.I459	1.000	247	0%	114	34.2%	-	-	-	-	-	HMMPfam_Sec10
MUDENG	55745	genome.wustl.edu	37	14	57748865	57748865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018229.3	+1	validated	p.R336I	1.000	206	0%	83	39.8%	-	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
NAA30	122830	genome.wustl.edu	37	14	57876212	57876212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011713.2	+1	validated	p.R356Q	1.000	269	0%	135	30.4%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_Acyl-CoA N-acyltransferases (Nat)
C14orf105	55195	genome.wustl.edu	37	14	57960280	57960280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018168.2	-1	validated	p.D52N	0.324	282	0%	155	36.1%	-	-	possibly_damaging(0.944)	tolerated(0.19)	neutral(0.438)	NULL
C14orf37	145407	genome.wustl.edu	37	14	58471516	58471516	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001872.2	-1	predicted	p.E755*	1.000	264	0%	110	22.7%	-	-	-	-	-	NULL
C14orf37	145407	genome.wustl.edu	37	14	58563625	58563625	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001872.2	-1	predicted	p.E636*	1.000	1089	0%	681	35.2%	-	-	-	-	-	NULL
PSMA3	5684	genome.wustl.edu	37	14	58734218	58734218	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002788.2	+1	reviewed	p.I190	0.997	190	0%	94	39.4%	-	-	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ARID4A	5926	genome.wustl.edu	37	14	58831821	58831821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002892.3	+1	reviewed	p.V1005A	0.062	297	0%	118	32.2%	-	-	benign(0.014)	tolerated(0.14)	neutral(0.250)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58833724	58833724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002892.3	+1	reviewed	p.R1216I	1.000	147	0%	47	25.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58899111	58899111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014749.3	+1	validated	p.D116Y	1.000	174	0%	59	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58909487	58909487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014749.3	+1	validated	p.E158D	0.504	198	0%	89	29.2%	-	-	benign(0.117)	deleterious(0.04)	neutral(0.358)	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58917322	58917322	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014749.3	+1	validated	p.T329	0.000	133	0%	58	29.3%	-	-	-	-	-	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58953845	58953845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014749.3	+1	validated	p.D1013Y	0.006	494	0%	196	23.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DACT1	51339	genome.wustl.edu	37	14	59112520	59112520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016651.5	+1	validated	p.K393N	1.000	107	0%	58	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C14orf38	729665	genome.wustl.edu	37	14	59992057	59992057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000281581	-1	known	p.F646L	0.997	624	0%	288	36.1%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
RTN1	6252	genome.wustl.edu	37	14	60194387	60194387	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021136.2	-1	reviewed	e3-1	1.000	31	0%	18	33.3%	-	-	-	-	-	-
C14orf135	64430	genome.wustl.edu	37	14	60581970	60581970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022495.5	+1	validated	p.S149F	0.983	377	0%	189	15.9%	-	-	benign(0.234)	deleterious(0.03)	neutral(0.388)	NULL
C14orf135	64430	genome.wustl.edu	37	14	60591794	60591794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022495.5	+1	validated	p.D735Y	1.000	414	0%	190	32.1%	-	-	benign(0.4)	deleterious(0.01)	deleterious(0.534)	NULL
DHRS7	51635	genome.wustl.edu	37	14	60616810	60616810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016029.2	-1	validated	p.E243D	0.994	146	0%	64	48.4%	-	-	possibly_damaging(0.451)	tolerated(0.48)	neutral(0.158)	superfamily_NAD(P)-binding Rossmann-fold domains
PPM1A	5494	genome.wustl.edu	37	14	60749553	60749553	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177952.2	+1	reviewed	p.I117	0.364	764	0%	508	39%	-	-	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PPM1A	5494	genome.wustl.edu	37	14	60749942	60749942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177952.2	+1	reviewed	p.R247Q	1.000	204	0%	119	18.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
C14orf39	317761	genome.wustl.edu	37	14	60921766	60921766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174978.2	-1	validated	p.N486H	1.000	145	0%	54	51.9%	-	-	unknown(0)	deleterious(0)	-	NULL
C14orf39	317761	genome.wustl.edu	37	14	60936346	60936346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174978.2	-1	validated	p.D194Y	1.000	278	0%	107	22.4%	-	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
SIX6	4990	genome.wustl.edu	37	14	60976364	60976364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007374.2	+1	reviewed	p.S83L	1.000	83	0%	48	29.2%	-	-	possibly_damaging(0.943)	tolerated(0.33)	neutral(0.412)	NULL
SIX4	51804	genome.wustl.edu	37	14	61180560	61180560	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017420.4	-1	reviewed	p.I637	0.996	329	0%	168	12.5%	-	-	-	-	-	NULL
SIX4	51804	genome.wustl.edu	37	14	61186478	61186478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017420.4	-1	reviewed	p.G517C	1.000	111	0%	83	34.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HIF1A	3091	genome.wustl.edu	37	14	62187117	62187117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001530.3	+1	validated	p.R18Q	1.000	278	0%	151	33.1%	-	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	superfamily_HLH helix-loop-helix DNA-binding domain
HIF1A	3091	genome.wustl.edu	37	14	62200971	62200971	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001530.3	+1	validated	p.P332	1.000	263	0%	177	35%	-	-	-	-	-	HMMSmart_SM00086,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
HIF1A	3091	genome.wustl.edu	37	14	62207327	62207327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001530.3	+1	validated	p.K547N	1.000	338	0%	140	37.1%	-	-	benign(0.218)	tolerated(0.07)	neutral(0.341)	NULL
SNAPC1	6617	genome.wustl.edu	37	14	62233749	62233749	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003082.3	+1	validated	p.Q95P	1.000	336	0%	173	42.2%	-	-	probably_damaging(0.996)	tolerated(0.33)	deleterious(0.486)	HMMPfam_SNAPc_SNAP43
KCNH5	27133	genome.wustl.edu	37	14	63174459	63174459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139318.3	-1	reviewed	p.E912K	1.000	341	0%	182	36.8%	-	-	possibly_damaging(0.876)	deleterious(0.02)	deleterious(0.724)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63269215	63269215	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139318.3	-1	reviewed	p.R552*	1.000	140	0%	64	29.7%	-	-	-	-	-	HMMSmart_SM00100,superfamily_cAMP-binding domain-like
GPHB5	122876	genome.wustl.edu	37	14	63784538	63784538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145171.2	-1	validated	p.G9D	0.386	88	0%	50	32%	-	-	-	-	-	NULL
WDR89	112840	genome.wustl.edu	37	14	64066239	64066239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008726.1	-1	validated	p.A141V	0.998	271	0%	165	41.2%	-	-	possibly_damaging(0.903)	tolerated(0.33)	neutral(0.382)	superfamily_WD40_like
SYNE2	23224	genome.wustl.edu	37	14	64460578	64460578	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.K891T	0.032	141	0%	59	22%	-	-	probably_damaging(0.955)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64484465	64484465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.E1680D	0.102	205	0%	98	12.2%	-	-	benign(0.04)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64491104	64491104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.E1923K	0.880	208	0%	110	39.1%	-	-	probably_damaging(0.979)	-	-	superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64494408	64494408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.S2204Y	1.000	160	0%	59	23.7%	-	-	probably_damaging(0.99)	-	-	superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64655376	64655376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.L5941I	0.779	221	0%	98	38.8%	-	-	probably_damaging(0.981)	tolerated(0.08)	deleterious(0.726)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MTHFD1	4522	genome.wustl.edu	37	14	64908849	64908849	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005956.3	+1	reviewed	p.I654	0.324	270	0%	177	40.7%	-	-	-	-	-	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB25	7597	genome.wustl.edu	37	14	64954645	64954645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006977.2	-1	validated	p.L102I	1.000	144	0%	91	30.8%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
ZBTB1	22890	genome.wustl.edu	37	14	64989825	64989825	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123329.1	+1	validated	p.R535*	1.000	405	0%	228	32.9%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2
MAX	4149	genome.wustl.edu	37	14	65568302	65568302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441116	-1	known	p.L16I	1.000	121	0%	49	36.7%	-	-	-	-	-	NULL
MPP5	64398	genome.wustl.edu	37	14	67787792	67787792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022474.2	+1	validated	p.R519Q	1.000	305	0%	233	39.9%	-	-	possibly_damaging(0.816)	deleterious(0.03)	deleterious(0.673)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP5	64398	genome.wustl.edu	37	14	67787844	67787844	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022474.2	+1	validated	p.F536	0.988	392	0%	223	34.1%	-	-	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATP6V1D	51382	genome.wustl.edu	37	14	67819710	67819710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015994.2	-1	reviewed	p.R30Q	1.000	502	0%	251	30.7%	-	-	possibly_damaging(0.836)	deleterious(0)	deleterious(0.764)	HMMPfam_ATP-synt_D
TMEM229B	161145	genome.wustl.edu	37	14	67940317	67940317	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182526.2	-1	provisional	p.F108	0.999	173	0%	103	33%	-	-	-	-	-	NULL
TMEM229B	161145	genome.wustl.edu	37	14	67940503	67940503	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182526.2	-1	provisional	p.S46	1.000	51	0%	42	28.6%	-	-	-	-	-	NULL
PLEKHH1	57475	genome.wustl.edu	37	14	68041026	68041026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020715.2	+1	validated	p.R665Q	0.997	183	0%	69	30.4%	-	-	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PIGH	5283	genome.wustl.edu	37	14	68060601	68060601	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004569.3	-1	reviewed	p.V83	1.000	272	0%	140	37.9%	-	-	-	-	-	NULL
RAD51B	5890	genome.wustl.edu	37	14	68353772	68353772	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133509.2	+1	reviewed	p.G203*	0.871	131	0%	75	38.7%	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACTN1	87	genome.wustl.edu	37	14	69360390	69360390	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130004.1	-1	reviewed	p.Y279	0.970	212	0%	151	33.1%	-	-	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin
GALNTL1	57452	genome.wustl.edu	37	14	69792090	69792090	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020692.2	+1	validated	p.E157	1.000	463	0%	360	30.3%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
ERH	2079	genome.wustl.edu	37	14	69861567	69861567	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004450.2	-1	validated	p.Y22	0.940	398	0%	206	11.2%	-	-	-	-	-	HMMPfam_ER
SRSF5	6430	genome.wustl.edu	37	14	70235601	70235601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039465.1	+1	validated	p.R95Q	1.000	245	0%	145	33.1%	-	-	benign(0.072)	tolerated(0.38)	neutral(0.023)	superfamily_RNA-binding domain RBD
SRSF5	6430	genome.wustl.edu	37	14	70237222	70237222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344070	+1	known	p.V131I	0.998	239	0%	91	36.3%	-	-	-	-	-	NULL
ENSG00000235812	0	genome.wustl.edu	37	14	70713296	70713296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433248	-1	known	p.R191I	0.002	815	0%	366	23.5%	-	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
COX16	51241	genome.wustl.edu	37	14	70809447	70809447	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016468.5	-1	validated	e2-1	1.000	350	0%	140	30.7%	-	-	-	-	-	-
SIPA1L1	26037	genome.wustl.edu	37	14	72176161	72176161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.R1351C	0.978	71	0%	33	33.3%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72197010	72197010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.S1639L	0.995	165	0%	102	33.3%	-	-	benign(0.265)	deleterious(0.01)	neutral(0.433)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72204987	72204987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.S1739Y	1.000	355	0%	217	10.6%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72205025	72205025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.R1752W	1.000	279	0%	168	18.5%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
ZFYVE1	53349	genome.wustl.edu	37	14	73444681	73444681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021260.1	-1	reviewed	p.P530H	1.000	473	0%	267	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZFYVE1	53349	genome.wustl.edu	37	14	73464710	73464710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021260.1	-1	reviewed	p.R266Q	1.000	184	0%	131	19.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RBM25	58517	genome.wustl.edu	37	14	73544152	73544152	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021239.2	+1	validated	p.E78*	1.000	369	0%	184	35.3%	-	-	-	-	-	NULL
PAPLN	89932	genome.wustl.edu	37	14	73712393	73712393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173462.3	+1	validated	p.C74R	0.993	65	0%	39	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
PAPLN	89932	genome.wustl.edu	37	14	73716781	73716781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173462.3	+1	validated	p.E142K	1.000	190	0%	128	40.6%	-	-	probably_damaging(0.953)	tolerated(0.18)	neutral(0.453)	NULL
PAPLN	89932	genome.wustl.edu	37	14	73732177	73732177	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173462.3	+1	validated	p.I1048	0.966	53	0%	30	46.7%	-	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
C14orf43	91748	genome.wustl.edu	37	14	74186037	74186037	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001043318.1	-1	validated	p.E1035	1.000	212	0%	114	32.5%	-	-	-	-	-	NULL
ZNF410	57862	genome.wustl.edu	37	14	74363231	74363231	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021188.1	+1	provisional	p.R128	1.000	168	0%	85	36.5%	-	-	-	-	-	NULL
VSX2	338917	genome.wustl.edu	37	14	74706381	74706381	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182894.2	+1	reviewed	p.G39	1.000	35	0.000	8	0.625	-	-	-	-	-	NULL
ABCD4	5826	genome.wustl.edu	37	14	74761882	74761882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005050.3	-1	reviewed	p.R230W	1.000	244	0%	146	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane_2,superfamily_ABC_TM_1
LTBP2	4053	genome.wustl.edu	37	14	74988688	74988688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000428.2	-1	reviewed	p.R905H	0.021	166	0%	114	33.3%	-	-	possibly_damaging(0.72)	deleterious(0.01)	deleterious(0.667)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
FCF1	51077	genome.wustl.edu	37	14	75180199	75180199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015962.4	+1	validated	p.K5N	1.000	214	0.5%	92	32.6%	-	-	possibly_damaging(0.6)	tolerated(0.06)	deleterious(0.530)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75230708	75230708	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019589.2	+1	validated	p.P172	0.998	301	0.3%	149	39.6%	-	-	-	-	-	NULL
YLPM1	56252	genome.wustl.edu	37	14	75247187	75247187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019589.2	+1	validated	p.R397Q	1.000	241	0%	157	33.8%	-	-	unknown(0)	deleterious(0.01)	-	NULL
YLPM1	56252	genome.wustl.edu	37	14	75276969	75276969	+	Missense_Mutation	SNP	C	C	T	rs190418068	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019589.2	+1	validated	p.R1692C	0.978	148	0%	85	37.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ACYP1	97	genome.wustl.edu	37	14	75520362	75520362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001107.3	-1	reviewed	p.A29T	1.000	286	0%	199	36.7%	-	-	unknown(0)	-	-	HMMPfam_Acylphosphatase,superfamily_Acylphosphatase-like
ZC2HC1C	79696	genome.wustl.edu	37	14	75537699	75537699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024643.2	+1	validated	p.L141F	1.000	180	0%	104	38.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMED10	10972	genome.wustl.edu	37	14	75602546	75602546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006827.5	-1	reviewed	p.R152Q	0.995	339	0%	168	41.1%	-	-	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	HMMPfam_EMP24_GP25L
FOS	2353	genome.wustl.edu	37	14	75746797	75746797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005252.3	+1	reviewed	p.A120V	0.996	68	0%	33	27.3%	-	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	NULL
C14orf1	11161	genome.wustl.edu	37	14	76121302	76121302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007176.2	-1	validated	p.R51W	1.000	275	0%	157	40.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Erg28
C14orf166B	145497	genome.wustl.edu	37	14	77304288	77304288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194287.2	+1	validated	p.S190Y	0.443	366	0%	174	32.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00368,superfamily_RNI-like
TMEM63C	57156	genome.wustl.edu	37	14	77706878	77706878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020431.2	+1	validated	p.E331K	1.000	51	0%	38	47.4%	-	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
TMEM63C	57156	genome.wustl.edu	37	14	77709312	77709312	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020431.2	+1	validated	p.F418	1.000	319	0%	231	16.5%	-	-	-	-	-	HMMPfam_DUF221
TMEM63C	57156	genome.wustl.edu	37	14	77714836	77714836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020431.2	+1	validated	p.R583I	1.000	214	0%	134	32.1%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_DUF221
GSTZ1	2954	genome.wustl.edu	37	14	77793201	77793201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145870.2	+1	reviewed	p.D30N	0.350	109	0%	68	41.2%	-	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_GST_N,superfamily_Thioredoxin-like
SPTLC2	9517	genome.wustl.edu	37	14	77984495	77984495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004863.2	-1	validated	p.E485D	1.000	176	0%	68	29.4%	-	-	possibly_damaging(0.767)	tolerated(0.09)	deleterious(0.581)	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
SPTLC2	9517	genome.wustl.edu	37	14	78063597	78063597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004863.2	-1	validated	p.L87I	1.000	366	0%	182	34.6%	-	-	benign(0.072)	tolerated(0.78)	neutral(0.006)	NULL
NRXN3	9369	genome.wustl.edu	37	14	79117578	79117578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004796.4	+1	reviewed	p.S4L	1.000	266	0%	155	40%	-	-	benign(0.205)	deleterious(0)	neutral(0.465)	superfamily_ConA_like_lec_gl
NRXN3	9369	genome.wustl.edu	37	14	79434659	79434659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004796.4	+1	reviewed	p.R665W	0.997	257	0%	145	40.7%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_ConA_like_lec_gl
CEP128	145508	genome.wustl.edu	37	14	81251485	81251485	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152446.3	-1	validated	p.E655	1.000	428	0%	270	17%	-	-	-	-	-	NULL
GTF2A1	2957	genome.wustl.edu	37	14	81646649	81646649	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015859.2	-1	validated	p.K350T	1.000	226	0%	100	29%	-	-	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	HMMPfam_TFIIA,superfamily_Transcription factor IIA (TFIIA) beta-barrel domain
GTF2A1	2957	genome.wustl.edu	37	14	81662506	81662506	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015859.2	-1	validated	p.Q186	0.995	422	0.2%	210	43.3%	-	-	-	-	-	HMMPfam_TFIIA
GTF2A1	2957	genome.wustl.edu	37	14	81682762	81682762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015859.2	-1	validated	p.K43E	1.000	223	0%	90	11.1%	-	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_TFIIA,superfamily_Transcription factor IIA (TFIIA) alpha-helical domain
FLRT2	23768	genome.wustl.edu	37	14	86089454	86089454	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013231.4	+1	reviewed	p.T532	0.235	118	0%	53	45.3%	-	-	-	-	-	NULL
FLRT2	23768	genome.wustl.edu	37	14	86089685	86089685	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013231.4	+1	reviewed	p.I609	0.995	69	0%	30	33.3%	-	-	-	-	-	NULL
GALC	2581	genome.wustl.edu	37	14	88442795	88442795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000153.2	-1	reviewed	p.R220Q	0.056	244	0%	127	40.2%	-	-	benign(0.003)	tolerated(0.63)	neutral(0.004)	HMMPfam_Glyco_hydro_59,superfamily_(Trans)glycosidases
GPR65	8477	genome.wustl.edu	37	14	88478112	88478112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003608.3	+1	validated	p.F307L	0.926	194	0%	122	35.2%	-	-	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_Family A G protein-coupled receptor-like
SPATA7	55812	genome.wustl.edu	37	14	88904673	88904673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018418.4	+1	reviewed	p.F569L	0.000	118	0%	64	28.1%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
PTPN21	11099	genome.wustl.edu	37	14	88936376	88936376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007039.3	-1	reviewed	p.E964K	1.000	361	0%	151	35.1%	-	-	possibly_damaging(0.78)	deleterious(0.03)	deleterious(0.656)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPN21	11099	genome.wustl.edu	37	14	88962818	88962818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007039.3	-1	reviewed	p.K291E	1.000	199	0%	101	39.6%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_FERM_C,superfamily_PH domain-like
ZC3H14	79882	genome.wustl.edu	37	14	89044481	89044481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024824.4	+1	validated	p.Q426K	0.999	78	0%	25	44%	-	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
EML5	161436	genome.wustl.edu	37	14	89093199	89093199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183387.2	-1	validated	p.A1575T	0.974	199	0%	126	17.5%	-	-	benign(0.043)	tolerated(0.27)	neutral(0.036)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
EML5	161436	genome.wustl.edu	37	14	89171831	89171831	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183387.2	-1	validated	p.R643*	1.000	211	0%	97	28.9%	-	-	-	-	-	NULL
FOXN3	1112	genome.wustl.edu	37	14	89878785	89878785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085471.1	-1	reviewed	p.E12D	1.000	114	0%	70	11.4%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
EFCAB11	90141	genome.wustl.edu	37	14	90398912	90398912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145231.2	-1	validated	p.R93W	0.129	341	0.3%	154	41.6%	-	-	benign(0.006)	tolerated(0.18)	neutral(0.056)	superfamily_EF-hand
EFCAB11	90141	genome.wustl.edu	37	14	90416477	90416477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145231.2	-1	validated	p.D61N	0.809	169	0%	95	22.1%	-	-	-	-	-	superfamily_EF-hand
TDP1	55775	genome.wustl.edu	37	14	90450938	90450938	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008744.1	+1	reviewed	p.A321	0.997	375	0%	189	35.4%	-	-	-	-	-	HMMPfam_Tyr-DNA_phospho,superfamily_SSF56024
KCNK13	56659	genome.wustl.edu	37	14	90651042	90651042	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022054.2	+1	reviewed	p.R308*	0.004	58	0%	53	34%	-	-	-	-	-	NULL
C14orf102	55051	genome.wustl.edu	37	14	90756674	90756674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017970.2	-1	validated	p.R707Q	0.969	155	0%	101	36.6%	-	-	possibly_damaging(0.885)	tolerated(0.37)	neutral(0.365)	superfamily_Prenyl_trans
CALM1	801	genome.wustl.edu	37	14	90870756	90870756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006888.4	+1	reviewed	p.R107C	1.000	482	0%	253	36.8%	-	-	benign(0.124)	deleterious(0.01)	neutral(0.416)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
RPS6KA5	9252	genome.wustl.edu	37	14	91366479	91366479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004755.2	-1	validated	p.A451D	0.994	258	0%	115	33.9%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
C14orf159	80017	genome.wustl.edu	37	14	91636380	91636380	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102368.1	+1	validated	p.F97	0.005	82	0%	54	48.1%	-	-	-	-	-	NULL
SMEK1	55671	genome.wustl.edu	37	14	91929137	91929137	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032560.4	-1	validated	p.G626*	1.000	634	0%	378	38.9%	-	-	-	-	-	NULL
CATSPERB	79820	genome.wustl.edu	37	14	92074695	92074695	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024764.2	-1	validated	p.N884K	1.000	484	0%	221	33%	-	-	benign(0.316)	deleterious(0.03)	neutral(0.464)	NULL
TRIP11	9321	genome.wustl.edu	37	14	92454635	92454635	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004239.3	-1	reviewed	p.K1751N	1.000	269	0%	144	45.1%	-	-	possibly_damaging(0.611)	tolerated(0.15)	neutral(0.453)	NULL
TRIP11	9321	genome.wustl.edu	37	14	92472695	92472695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004239.3	-1	reviewed	p.R542I	0.851	221	0%	129	20.2%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92621536	92621536	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017437.1	+1	validated	p.T437	0.004	251	0%	109	30.3%	-	-	-	-	-	NULL
RIN3	79890	genome.wustl.edu	37	14	93043734	93043734	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024832.3	+1	validated	p.S93	0.034	193	0%	83	21.7%	-	-	-	-	-	HMMSmart_SM00252,superfamily_SH2 domain
GOLGA5	9950	genome.wustl.edu	37	14	93290966	93290966	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005113.2	+1	reviewed	p.E566*	1.000	258	0%	112	38.4%	-	-	-	-	-	HMMPfam_Golgin_A5
GOLGA5	9950	genome.wustl.edu	37	14	93299583	93299583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005113.2	+1	reviewed	p.K612N	1.000	143	0.7%	96	40.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Golgin_A5
C14orf109	26175	genome.wustl.edu	37	14	93652955	93652955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098621.1	+1	predicted	p.R150H	1.000	170	0.6%	163	32.5%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
UBR7	55148	genome.wustl.edu	37	14	93686646	93686646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175748.3	+1	validated	p.V338I	1.000	112	0%	61	21.3%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93730195	93730195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.S436L	1.000	234	0%	122	36.9%	-	-	benign(0.296)	deleterious(0)	deleterious(0.536)	HMMPfam_BACK
UNC79	57578	genome.wustl.edu	37	14	94069764	94069764	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020818.3	+1	validated	p.R1075*	1.000	256	0%	141	31.9%	-	-	-	-	-	NULL
PRIMA1	145270	genome.wustl.edu	37	14	94203593	94203593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178013.3	-1	reviewed	p.I118R	1.000	210	0%	115	10.4%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ASB2	51676	genome.wustl.edu	37	14	94405676	94405676	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016150.3	-1	reviewed	p.A417	0.998	30	0%	26	30.8%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
OTUB2	78990	genome.wustl.edu	37	14	94512187	94512187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023112.3	+1	validated	p.F208L	1.000	191	0%	138	43.5%	-	-	benign(0.13)	deleterious(0.01)	neutral(0.417)	HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases
PPP4R4	57718	genome.wustl.edu	37	14	94725646	94725646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058237.1	+1	reviewed	p.F689L	1.000	132	0%	73	42.5%	-	-	benign(0.007)	tolerated(0.94)	-	NULL
SERPINA12	145264	genome.wustl.edu	37	14	94962931	94962931	+	Missense_Mutation	SNP	G	G	T	rs34365882	byCluster;byFrequency	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173850.2	-1	provisional	p.F228L	0.462	177	0%	147	40.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA4	5267	genome.wustl.edu	37	14	95034559	95034559	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006215.2	+1	provisional	p.T339	0.000	310	0.3%	152	15.8%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA5	5104	genome.wustl.edu	37	14	95053897	95053897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000624.4	+1	validated	p.F66L	1.000	82	0%	39	15.4%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINA5	5104	genome.wustl.edu	37	14	95054134	95054134	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000624.4	+1	validated	p.F145	0.267	134	0%	74	35.1%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
DICER1	23405	genome.wustl.edu	37	14	95557660	95557660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.E1803K	1.000	540	0%	223	36.3%	-	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
DICER1	23405	genome.wustl.edu	37	14	95570150	95570150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.D1195N	1.000	380	0%	232	38.4%	-	-	benign(0.15)	tolerated(0.26)	neutral(0.047)	NULL
DICER1	23405	genome.wustl.edu	37	14	95572534	95572534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.R944Q	1.000	191	0%	138	35.5%	-	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_PAZ,superfamily_SSF101690
DICER1	23405	genome.wustl.edu	37	14	95582863	95582863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.Y560C	1.000	263	0%	183	23%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
DICER1	23405	genome.wustl.edu	37	14	95590633	95590633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.E426*	1.000	294	0%	157	16.6%	-	-	-	-	-	superfamily_SSF52540
CLMN	79789	genome.wustl.edu	37	14	95669414	95669414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024734.3	-1	validated	p.E758K	0.003	99	0%	69	30.4%	-	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
CLMN	79789	genome.wustl.edu	37	14	95669415	95669415	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024734.3	-1	validated	p.L757	0.000	98	0%	69	31.9%	-	-	-	-	-	NULL
CLMN	79789	genome.wustl.edu	37	14	95669993	95669993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024734.3	-1	validated	p.K565E	0.008	311	0%	162	35.2%	-	-	benign(0.42)	deleterious(0)	deleterious(0.581)	NULL
CLMN	79789	genome.wustl.edu	37	14	95670788	95670788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024734.3	-1	validated	p.D300N	0.733	149	0%	94	14.9%	-	-	benign(0.106)	tolerated(0.95)	neutral(0.008)	NULL
C14orf49	161176	genome.wustl.edu	37	14	95921973	95921973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152592.3	-1	validated	p.L293S	0.968	104	0%	57	36.8%	-	-	probably_damaging(1)	tolerated(0.51)	deleterious(0.509)	HMMSmart_SM00150,superfamily_Spectrin repeat
BDKRB2	624	genome.wustl.edu	37	14	96706744	96706744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000623.3	+1	reviewed	p.D27N	0.015	32	0%	30	33.3%	-	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	NULL
BDKRB2	624	genome.wustl.edu	37	14	96707170	96707170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000623.3	+1	reviewed	p.R169C	1.000	67	0%	75	42.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ATG2B	55102	genome.wustl.edu	37	14	96752156	96752156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018036.5	-1	validated	p.R2058I	1.000	295	0%	179	37.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATG_C
AK7	122481	genome.wustl.edu	37	14	96924468	96924468	+	Missense_Mutation	SNP	G	G	A	rs149622950	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152327.2	+1	validated	p.E426K	0.682	229	0%	117	33.3%	-	-	benign(0.004)	tolerated(0.71)	neutral(0.002)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PAPOLA	10914	genome.wustl.edu	37	14	97009137	97009137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032632.3	+1	validated	p.R399Q	1.000	455	0%	170	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP_RNA-bind,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain
VRK1	7443	genome.wustl.edu	37	14	97322563	97322563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003384.2	+1	reviewed	p.K269R	0.979	229	0%	87	42.5%	-	-	benign(0.002)	tolerated(0.52)	neutral(0.009)	superfamily_Kinase_like
BCL11B	64919	genome.wustl.edu	37	14	99642514	99642514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138576.2	-1	reviewed	p.S220I	1.000	30	0%	23	39.1%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_C2H2 and C2HC zinc fingers
SETD3	84193	genome.wustl.edu	37	14	99865291	99865291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032233.2	-1	validated	p.E504*	1.000	358	0%	233	32.6%	-	-	-	-	-	superfamily_RuBisCo LSMT C-terminal substrate-binding domain
SETD3	84193	genome.wustl.edu	37	14	99866564	99866564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032233.2	-1	validated	p.A404T	0.999	194	0%	115	37.4%	-	-	probably_damaging(0.983)	tolerated(0.19)	deleterious(0.478)	HMMPfam_Rubis-subs-bind,superfamily_RuBisCo LSMT C-terminal substrate-binding domain
SETD3	84193	genome.wustl.edu	37	14	99929845	99929845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032233.2	-1	validated	p.E58D	1.000	353	0%	178	34.3%	-	-	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	NULL
CCNK	8812	genome.wustl.edu	37	14	99968607	99968607	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099402.1	+1	reviewed	p.L213	0.011	368	0%	222	40.1%	-	-	-	-	-	HMMSmart_SM00385,superfamily_Cyclin-like
EML1	2009	genome.wustl.edu	37	14	100373991	100373991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008707.1	+1	reviewed	p.L361R	1.000	347	0%	138	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like
DEGS2	123099	genome.wustl.edu	37	14	100613226	100613226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206918.2	-1	reviewed	p.E282K	1.000	101	0%	67	47.8%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_FA_desaturase
WARS	7453	genome.wustl.edu	37	14	100826997	100826997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004184.3	-1	reviewed	p.R106W	0.993	517	0%	314	36.6%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_Nucleotidylyl transferase
RTL1	388015	genome.wustl.edu	37	14	101348447	101348447	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134888.2	-1	reviewed	p.I893	0.000	94	0%	49	38.8%	-	-	-	-	-	superfamily_DNA/RNA polymerases
RTL1	388015	genome.wustl.edu	37	14	101349060	101349060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134888.2	-1	reviewed	p.A689E	0.933	188	0%	154	37%	-	-	possibly_damaging(0.894)	deleterious(0)	deleterious(0.796)	superfamily_DNA/RNA polymerases
RTL1	388015	genome.wustl.edu	37	14	101349578	101349578	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134888.2	-1	reviewed	p.V516	0.933	80	0%	67	41.8%	-	-	-	-	-	superfamily_Acid proteases
RTL1	388015	genome.wustl.edu	37	14	101349960	101349960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134888.2	-1	reviewed	p.R389M	0.994	65	0%	48	41.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MIR411	693121	genome.wustl.edu	37	14	101489672	101489672	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362239	+1	known	NULL	1.000	224	0%	147	46.3%	-	-	-	-	-	-
MIR1247	100302145	genome.wustl.edu	37	14	102026722	102026722	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408206	-1	known	NULL	1.000	16	0.000	6	0.667	-	-	-	-	-	-
DIO3	1735	genome.wustl.edu	37	14	102028017	102028017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001362.3	+1	reviewed	p.L36I	0.955	53	0%	48	25%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_T4_deiodinase
DYNC1H1	1778	genome.wustl.edu	37	14	102478316	102478316	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.L2241	1.000	288	0%	185	33%	-	-	-	-	-	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
DYNC1H1	1778	genome.wustl.edu	37	14	102508812	102508812	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.R4123*	0.850	157	0%	121	35.5%	-	-	-	-	-	HMMPfam_Dynein_heavy
DYNC1H1	1778	genome.wustl.edu	37	14	102514870	102514870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.F4412L	1.000	147	0%	58	32.8%	-	-	possibly_damaging(0.57)	tolerated(0.14)	neutral(0.445)	HMMPfam_Dynein_heavy
HSP90AA1	3320	genome.wustl.edu	37	14	102568360	102568360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017963.2	-1	validated	p.S73Y	0.027	183	0%	111	35.1%	-	-	unknown(0)	-	-	NULL
WDR20	91833	genome.wustl.edu	37	14	102676054	102676054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181291.1	+1	reviewed	p.R516Q	1.000	179	0%	129	24%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_WD40_like
WDR20	91833	genome.wustl.edu	37	14	102676097	102676097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181291.1	+1	reviewed	p.K530N	1.000	200	0.5%	136	16.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
MOK	5891	genome.wustl.edu	37	14	102749863	102749863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014226.1	-1	provisional	p.R25K	0.985	711	0%	366	25.1%	-	-	unknown(0)	tolerated(0.34)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
TECPR2	9895	genome.wustl.edu	37	14	102843182	102843182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	p.D42N	1.000	174	0%	142	14.1%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_WD40,superfamily_WD40_like
RCOR1	23186	genome.wustl.edu	37	14	103173724	103173724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015156.2	+1	validated	p.E176K	1.000	450	0%	224	11.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDC42BPB	9578	genome.wustl.edu	37	14	103452887	103452887	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006035.3	-1	reviewed	p.D209	0.933	516	0%	241	36.5%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TNFAIP2	7127	genome.wustl.edu	37	14	103596438	103596438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006291.2	+1	reviewed	p.E359K	1.000	40	0%	39	30.8%	-	-	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	HMMPfam_Sec6
MARK3	4140	genome.wustl.edu	37	14	103941404	103941404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128918.1	+1	validated	p.E447*	1.000	163	0%	114	34.2%	-	-	-	-	-	NULL
BAG5	9529	genome.wustl.edu	37	14	104026334	104026334	+	Nonsense_Mutation	SNP	G	G	A	rs182208325	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015049.1	-1	reviewed	p.R431*	0.501	138	0%	81	46.9%	-	-	-	-	-	HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain
BAG5	9529	genome.wustl.edu	37	14	104027073	104027073	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015049.1	-1	reviewed	p.I184	0.949	250	0%	136	36%	-	-	-	-	-	NULL
KLC1	3831	genome.wustl.edu	37	14	104123969	104123969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130107.1	+1	reviewed	p.E116D	1.000	157	0%	89	19.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Rab5-bind,superfamily_TPR-like
TDRD9	122402	genome.wustl.edu	37	14	104436888	104436888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153046.2	+1	validated	p.R259Q	1.000	418	0%	238	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TDRD9	122402	genome.wustl.edu	37	14	104441821	104441821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153046.2	+1	validated	p.E314D	0.985	422	0%	267	40.8%	-	-	possibly_damaging(0.909)	tolerated(0.35)	neutral(0.383)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TDRD9	122402	genome.wustl.edu	37	14	104472785	104472785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153046.2	+1	validated	p.L591F	1.000	255	0%	127	33.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
INF2	64423	genome.wustl.edu	37	14	105179822	105179822	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022489.3	+1	validated	p.I973	1.000	77	0%	38	23.7%	-	-	-	-	-	HMMSmart_SM00498
AHNAK2	113146	genome.wustl.edu	37	14	105412067	105412067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.R3241C	0.001	372	0%	215	28.8%	-	-	unknown(0)	tolerated(0.1)	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105412322	105412322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.S3156P	0.003	412	0%	272	35.3%	-	-	possibly_damaging(0.643)	tolerated(0.26)	neutral(0.260)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105419300	105419300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.D830Y	0.813	431	0%	322	30.7%	-	-	benign(0.028)	deleterious(0.01)	neutral(0.407)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105423782	105423782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.E60K	0.923	55	0%	52	25%	-	-	benign(0.02)	deleterious(0)	neutral(0.446)	NULL
C14orf79	122616	genome.wustl.edu	37	14	105455403	105455403	+	Missense_Mutation	SNP	G	G	A	rs145688822	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174891.3	+1	validated	p.V183I	0.000	324	0.3%	139	30.2%	-	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
BRF1	2972	genome.wustl.edu	37	14	105677495	105677495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001519.2	-1	reviewed	p.P654S	0.998	77	0%	59	32.2%	-	-	benign(0.005)	tolerated(0.67)	neutral(0.003)	NULL
MTA1	9112	genome.wustl.edu	37	14	105924686	105924686	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004689.3	+1	reviewed	p.I210	0.456	71	0%	37	29.7%	-	-	-	-	-	HMMPfam_ELM2
IGHG4	3503	genome.wustl.edu	37	14	106090888	106090888	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390543	-1	known	p.F303	0.021	374	0%	253	31.6%	-	-	-	-	-	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHD3-10	28499	genome.wustl.edu	37	14	106370371	106370371	+	Silent	SNP	G	G	A	rs188553983	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390583	-1	known	p.F5	0.001	357	0%	211	36.5%	-	-	-	-	-	NULL
IGHV3-21	28444	genome.wustl.edu	37	14	106691939	106691939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390607	-1	known	p.G29C	0.946	322	0%	221	35.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_V-set,superfamily_Immunoglobulin
IGHV5-51	28388	genome.wustl.edu	37	14	107035135	107035135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390626	-1	known	p.L10I	0.060	138	0%	81	33.3%	-	-	benign(0.011)	tolerated(0.12)	neutral(0.261)	NULL
IGHV3-64	28414	genome.wustl.edu	37	14	107113742	107113742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454421	-1	known	p.R118I	0.196	261	0%	142	12%	-	-	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	HMMSmart_IGv,superfamily_SSF48726
IGHV3-72	28410	genome.wustl.edu	37	14	107198998	107198998	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433072	-1	known	p.K97	0.001	423	0%	242	14.5%	-	-	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV3-72	28410	genome.wustl.edu	37	14	107199077	107199077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433072	-1	known	p.R71I	0.000	442	0%	259	16.6%	-	-	benign(0.139)	tolerated(0.39)	neutral(0.028)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV3-73	28409	genome.wustl.edu	37	14	107210933	107210933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390636	-1	known	p.R119K	0.424	185	0%	94	36.2%	-	-	benign(0.085)	tolerated(0.17)	neutral(0.065)	HMMSmart_SM00406,superfamily_Immunoglobulin
IGHV3-74	28408	genome.wustl.edu	37	14	107218742	107218742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424969	-1	known	p.K95N	0.000	334	0.3%	205	41%	-	-	benign(0.06)	tolerated(0.08)	neutral(0.304)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV7-81	28378	genome.wustl.edu	37	14	107283039	107283039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390639	-1	known	p.A35V	0.277	311	0%	222	26.6%	-	-	benign(0.309)	tolerated(0.1)	neutral(0.383)	HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000215407	0	genome.wustl.edu	37	15	20468127	20468127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.L58V	0.000	979	0%	398	11.8%	-	-	-	-	-	HMMPfam_BRO1
GOLGA6L6	727832	genome.wustl.edu	37	15	20740436	20740436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145004.1	-1	inferred	p.K438N	0.982	422	0%	397	8.3%	-	-	unknown(0)	deleterious(0.02)	-	NULL
LOC727924	727924	genome.wustl.edu	37	15	22332609	22332609	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_015416.1	+1	predicted	NULL	0.779	568	0%	297	17.8%	-	-	-	-	-	-
OR4M2	390538	genome.wustl.edu	37	15	22368776	22368776	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004719.2	+1	validated	p.A67	0.472	1840	0.2%	837	18.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CYFIP1	23191	genome.wustl.edu	37	15	23002903	23002903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014608.2	+1	validated	p.R1209C	1.000	90	0%	51	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FragX_IP
LOC100288671	100288671	genome.wustl.edu	37	15	23108824	23108824	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343316.1	-1	model	p.E29*	1.000	33	0%	18	33.3%	-	-	-	-	-	NULL
LOC283683	283683	genome.wustl.edu	37	15	23145916	23145916	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_015696.3	-1	model	NULL	1.000	139	0%	77	13%	-	-	-	-	-	-
ENSG00000140181	0	genome.wustl.edu	37	15	23299068	23299068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454333	-1	known	p.F184L	1.000	376	0%	226	22.6%	-	-	-	-	-	NULL
ENSG00000223681	0	genome.wustl.edu	37	15	23330012	23330012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422607	-1	known	p.P11S	1.000	1027	0.2%	539	18%	-	-	benign(0.311)	tolerated(0.74)	neutral(0.099)	NULL
LOC653061	653061	genome.wustl.edu	37	15	23600036	23600036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343324.1	+1	model	p.R27I	0.999	184	0%	88	10.2%	-	-	-	-	-	NULL
LOC653061	653061	genome.wustl.edu	37	15	23606901	23606901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343324.1	+1	model	p.E385K	0.994	744	0.1%	339	12.7%	-	-	-	-	-	NULL
MKRN3	7681	genome.wustl.edu	37	15	23812328	23812328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005664.3	+1	reviewed	p.V467M	0.006	409	0%	197	28.9%	-	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
C15orf2	23742	genome.wustl.edu	37	15	24923588	24923588	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018958.2	+1	reviewed	p.G858	0.001	261	0%	131	38.9%	-	-	-	-	-	NULL
C15orf2	23742	genome.wustl.edu	37	15	24923874	24923874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018958.2	+1	reviewed	p.A954T	0.000	157	0%	98	29.6%	-	-	benign(0.355)	deleterious(0)	deleterious(0.557)	NULL
UBE3A	7337	genome.wustl.edu	37	15	25584345	25584345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000462.2	-1	reviewed	p.E856G	1.000	480	0%	197	32%	-	-	benign(0.151)	deleterious(0.01)	neutral(0.419)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
UBE3A	7337	genome.wustl.edu	37	15	25615832	25615832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000462.2	-1	reviewed	p.R500C	1.000	194	0.5%	114	24.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBE3A	7337	genome.wustl.edu	37	15	25620626	25620626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000462.2	-1	reviewed	p.R119I	1.000	130	0%	49	16.3%	-	-	possibly_damaging(0.836)	tolerated(0.16)	neutral(0.379)	NULL
ATP10A	57194	genome.wustl.edu	37	15	25966994	25966994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.F391L	1.000	276	0%	127	40.9%	-	-	benign(0.035)	tolerated(0.53)	neutral(0.009)	HMMPfam_E1-E2_ATPase
HERC2	8924	genome.wustl.edu	37	15	28369299	28369299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.E4358K	1.000	270	0%	142	35.2%	-	-	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	NULL
HERC2	8924	genome.wustl.edu	37	15	28465764	28465764	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.R1893	0.995	278	0%	181	24.9%	-	-	-	-	-	HMMPfam_MIB_HERC2
HERC2	8924	genome.wustl.edu	37	15	28474383	28474383	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.R1744*	1.000	237	0%	103	36.9%	-	-	-	-	-	NULL
APBA2	321	genome.wustl.edu	37	15	29393975	29393975	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005503.3	+1	reviewed	p.F504	0.998	70	0%	50	24%	-	-	-	-	-	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
TJP1	7082	genome.wustl.edu	37	15	30010985	30010985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003257.3	-1	validated	p.E1121K	0.995	560	0.2%	234	32.1%	-	-	benign(0.058)	deleterious(0.03)	neutral(0.368)	NULL
TJP1	7082	genome.wustl.edu	37	15	30054558	30054558	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003257.3	-1	validated	p.E225*	1.000	429	0%	237	32.9%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
CHRFAM7A	89832	genome.wustl.edu	37	15	30654988	30654988	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139320.1	-1	reviewed	p.C249	1.000	250	0.4%	193	22.3%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ARHGAP11B	89839	genome.wustl.edu	37	15	30925789	30925789	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039841.1	+1	provisional	p.K99	1.000	486	0%	262	41.2%	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
MTMR10	54893	genome.wustl.edu	37	15	31253154	31253154	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017762.2	-1	validated	p.E230*	1.000	382	0%	216	35.2%	-	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
MTMR10	54893	genome.wustl.edu	37	15	31266552	31266552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017762.2	-1	validated	p.R147C	1.000	268	0%	115	41.7%	-	-	benign(0.139)	tolerated(0.11)	neutral(0.284)	superfamily_PH domain-like
TRPM1	4308	genome.wustl.edu	37	15	31294387	31294387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002420.4	-1	reviewed	p.D1484N	0.772	210	0%	160	21.2%	-	-	benign(0.269)	tolerated(0.35)	neutral(0.049)	NULL
ARHGAP11A	9824	genome.wustl.edu	37	15	32915739	32915739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014783.3	+1	validated	p.E83K	1.000	518	0.2%	350	35.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ARHGAP11A	9824	genome.wustl.edu	37	15	32925298	32925298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014783.3	+1	validated	p.K408N	1.000	250	0%	130	51.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ARHGAP11A	9824	genome.wustl.edu	37	15	32928756	32928756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014783.3	+1	validated	p.E594D	0.988	189	0%	90	44.4%	-	-	possibly_damaging(0.574)	deleterious(0.03)	deleterious(0.561)	NULL
RYR3	6263	genome.wustl.edu	37	15	33916084	33916084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.A812S	1.000	265	0%	157	42%	-	-	benign(0)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34023764	34023764	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.L2431	0.998	233	0%	156	35.9%	-	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34130257	34130257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.E4026K	0.996	162	0%	102	41.2%	-	-	benign(0.05)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34130507	34130507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.D4109G	1.000	234	0%	135	37%	-	-	benign(0.006)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34133073	34133073	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.S4342	0.992	414	0%	230	34.8%	-	-	-	-	-	HMMPfam_RR_TM4-6
RYR3	6263	genome.wustl.edu	37	15	34134069	34134069	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.E4348*	1.000	580	0.2%	184	41.3%	-	-	-	-	-	HMMPfam_RR_TM4-6
RYR3	6263	genome.wustl.edu	37	15	34140491	34140491	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	e94-1	1.000	106	0%	50	40%	-	-	-	-	-	-
RYR3	6263	genome.wustl.edu	37	15	34151796	34151796	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.Y4721	0.594	811	0%	469	14.7%	-	-	-	-	-	HMMPfam_Ion_trans
C15orf24	56851	genome.wustl.edu	37	15	34388153	34388153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020154.2	-1	validated	p.S100F	1.000	278	0%	151	32.5%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_DUF2012
PGBD4	161779	genome.wustl.edu	37	15	34394854	34394854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152595.4	+1	validated	p.F41C	0.008	105	0%	63	36.5%	-	-	unknown(0)	deleterious(0.02)	-	NULL
PGBD4	161779	genome.wustl.edu	37	15	34396030	34396030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152595.4	+1	validated	p.S433L	0.833	146	0%	68	41.2%	-	-	benign(0.057)	tolerated(0.22)	neutral(0.046)	NULL
PGBD4	161779	genome.wustl.edu	37	15	34396248	34396248	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152595.4	+1	validated	p.R506*	0.005	170	0%	135	33.3%	-	-	-	-	-	NULL
C15orf29	79768	genome.wustl.edu	37	15	34445233	34445233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024713.2	-1	validated	p.R66C	0.076	233	0%	119	30.3%	-	-	possibly_damaging(0.772)	deleterious(0.02)	deleterious(0.670)	NULL
C15orf29	79768	genome.wustl.edu	37	15	34455846	34455846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024713.2	-1	validated	p.R11Q	0.999	219	0%	104	31.7%	-	-	benign(0.057)	tolerated(0.2)	neutral(0.053)	NULL
SLC12A6	9990	genome.wustl.edu	37	15	34542535	34542535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133647.1	-1	reviewed	p.F538C	1.000	294	0%	131	12.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_AA_permease
SLC12A6	9990	genome.wustl.edu	37	15	34551026	34551026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133647.1	-1	reviewed	p.K177N	0.999	682	0%	359	34.3%	-	-	benign(0.41)	tolerated(0.06)	neutral(0.455)	NULL
LPCAT4	254531	genome.wustl.edu	37	15	34651441	34651441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153613.2	-1	validated	p.R488C	1.000	586	0%	329	32.8%	-	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
AQR	9716	genome.wustl.edu	37	15	35159749	35159749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.R1277Q	1.000	250	0%	95	36.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AQR	9716	genome.wustl.edu	37	15	35202398	35202398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.R534Q	1.000	268	0%	159	14.5%	-	-	possibly_damaging(0.455)	tolerated(0.42)	neutral(0.163)	NULL
AQR	9716	genome.wustl.edu	37	15	35256458	35256458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.K37E	1.000	198	1%	84	40.5%	-	-	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
ATPBD4	89978	genome.wustl.edu	37	15	35834651	35834651	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080650.3	-1	validated	p.I27	1.000	232	0.4%	130	32.3%	-	-	-	-	-	HMMPfam_ATP_bind_4,superfamily_Adenine nucleotide alpha hydrolases-like
RASGRP1	10125	genome.wustl.edu	37	15	38800196	38800196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005739.3	-1	reviewed	p.G325S	1.000	92	0%	61	13.1%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
THBS1	7057	genome.wustl.edu	37	15	39881173	39881173	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003246.2	+1	reviewed	p.S553	0.999	418	0%	268	34%	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
THBS1	7057	genome.wustl.edu	37	15	39883721	39883721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003246.2	+1	reviewed	p.R810Q	0.999	410	0%	205	38%	-	-	possibly_damaging(0.555)	tolerated(0.35)	neutral(0.210)	HMMPfam_TSP_3,superfamily_TSP type-3 repeat
EIF2AK4	440275	genome.wustl.edu	37	15	40253992	40253992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013703.2	+1	validated	p.R251C	1.000	298	0%	162	34.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BUB1B	701	genome.wustl.edu	37	15	40505665	40505665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001211.5	+1	reviewed	p.L890I	0.996	438	0%	274	29.2%	-	-	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	superfamily_Protein kinase-like (PK-like)
DISP2	85455	genome.wustl.edu	37	15	40661286	40661286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033510.1	+1	reviewed	p.F991L	1.000	68	0%	71	23.9%	-	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	superfamily_SSF82866
C15orf23	90417	genome.wustl.edu	37	15	40675068	40675068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033286.3	+1	validated	p.R11I	0.000	90	0%	44	38.6%	-	-	benign(0.011)	tolerated(0.08)	neutral(0.300)	NULL
CASC5	57082	genome.wustl.edu	37	15	40901078	40901078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170589.3	+1	validated	p.R57C	1.000	139	0%	67	44.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CASC5	57082	genome.wustl.edu	37	15	40916438	40916438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170589.3	+1	validated	p.D1352Y	0.028	180	0%	84	44%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
SPINT1	6692	genome.wustl.edu	37	15	41146000	41146000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181642.2	+1	reviewed	p.F278	0.141	217	0%	114	39.5%	-	-	-	-	-	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like
VPS18	57617	genome.wustl.edu	37	15	41191393	41191393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020857.2	+1	reviewed	p.R126Q	1.000	215	0%	129	42.6%	-	-	probably_damaging(0.968)	tolerated(0.15)	deleterious(0.651)	NULL
RHOV	171177	genome.wustl.edu	37	15	41571080	41571080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007236.4	+1	reviewed	p.F176S	1.000	393	0%	184	28.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
NUSAP1	51203	genome.wustl.edu	37	15	41672322	41672322	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016359.3	+1	validated	p.R422*	0.911	654	0%	244	33.2%	-	-	-	-	-	NULL
NDUFAF1	51103	genome.wustl.edu	37	15	41688739	41688739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016013.2	-1	validated	p.Q173H	0.294	142	0%	98	49%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_CIA30
RPAP1	26015	genome.wustl.edu	37	15	41813062	41813062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015540.2	-1	reviewed	p.R1108C	0.028	68	0%	40	40%	-	-	possibly_damaging(0.888)	tolerated(0.08)	deleterious(0.647)	NULL
MGA	23269	genome.wustl.edu	37	15	41988692	41988692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.R495Q	0.982	95	0%	60	36.7%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
MGA	23269	genome.wustl.edu	37	15	42019410	42019410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.R1155*	1.000	249	0%	159	33.3%	-	-	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42034979	42034979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.E1656D	1.000	191	0%	140	42.9%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
MGA	23269	genome.wustl.edu	37	15	42052661	42052661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.E2493D	1.000	302	0%	184	37.5%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42134747	42134747	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_015346.1	+1	validated	NULL	0.977	262	0%	124	36.3%	-	-	-	-	-	-
SPTBN5	51332	genome.wustl.edu	37	15	42147510	42147510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016642.2	-1	validated	p.R3077Q	0.001	21	0%	20	30%	-	-	possibly_damaging(0.85)	tolerated(0.08)	deleterious(0.627)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN5	51332	genome.wustl.edu	37	15	42147758	42147758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016642.2	-1	validated	p.K3034N	0.503	61	0%	34	38.2%	-	-	benign(0.013)	tolerated(0.93)	neutral(0.001)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN5	51332	genome.wustl.edu	37	15	42178008	42178008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016642.2	-1	validated	p.R447H	1.000	53	0%	38	34.2%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PLA2G4D	283748	genome.wustl.edu	37	15	42363056	42363056	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178034.3	-1	validated	p.S634	0.756	226	0%	122	36.9%	-	-	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
GANC	2595	genome.wustl.edu	37	15	42598789	42598789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198141.2	+1	reviewed	p.F202L	0.999	400	0%	160	31.9%	-	-	probably_damaging(0.957)	tolerated(0.29)	neutral(0.430)	NULL
ZFP106	64397	genome.wustl.edu	37	15	42743538	42743538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022473.1	-1	provisional	p.L288P	0.000	468	0%	281	35.2%	-	-	benign(0.052)	tolerated(0.15)	neutral(0.244)	NULL
LRRC57	255252	genome.wustl.edu	37	15	42837298	42837298	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153260.2	-1	validated	p.R219*	1.000	260	0%	127	37.8%	-	-	-	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42961385	42961385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.Q421H	1.000	142	0%	93	45.2%	-	-	possibly_damaging(0.705)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42967937	42967937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.R540Q	1.000	113	0%	108	38%	-	-	possibly_damaging(0.935)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42976854	42976854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.K978N	0.001	185	0%	105	32.4%	-	-	possibly_damaging(0.564)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42983010	42983010	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.S2992	0.000	131	0%	73	34.2%	-	-	-	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42987420	42987420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.E4263K	1.000	204	0%	133	42.9%	-	-	possibly_damaging(0.667)	-	-	NULL
TTBK2	146057	genome.wustl.edu	37	15	43044672	43044672	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173500.3	-1	reviewed	p.E924	0.978	124	0%	87	41.4%	-	-	-	-	-	NULL
UBR1	197131	genome.wustl.edu	37	15	43351915	43351915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174916.2	-1	reviewed	p.I324V	1.000	197	0%	72	38.9%	-	-	benign(0.001)	tolerated(0.85)	neutral(0.001)	NULL
TMEM62	80021	genome.wustl.edu	37	15	43461855	43461855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024956.3	+1	provisional	p.R454Q	0.024	496	0.2%	308	34.7%	-	-	benign(0.005)	tolerated(0.3)	neutral(0.029)	NULL
CCNDBP1	23582	genome.wustl.edu	37	15	43483788	43483788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012142.3	+1	reviewed	p.R259W	0.978	203	0.5%	129	34.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TGM7	116179	genome.wustl.edu	37	15	43568727	43568727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052955.2	-1	validated	p.L687I	1.000	315	0%	179	10.6%	-	-	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	HMMPfam_Transglut_C,superfamily_Transglut_C
LCMT2	9836	genome.wustl.edu	37	15	43621586	43621586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014793.3	-1	reviewed	p.D368N	0.000	122	0%	77	44.2%	-	-	benign(0.004)	tolerated(0.55)	neutral(0.007)	NULL
LCMT2	9836	genome.wustl.edu	37	15	43621841	43621841	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014793.3	-1	reviewed	p.E283*	1.000	66	0%	25	36%	-	-	-	-	-	HMMPfam_LCM,superfamily_SSF53335
ZSCAN29	146050	genome.wustl.edu	37	15	43661991	43661991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152455.3	-1	validated	p.E41K	1.000	150	0%	105	29.5%	-	-	unknown(0)	tolerated(0.21)	-	HMMPfam_SCAN,HMMSmart_SM00431
TUBGCP4	27229	genome.wustl.edu	37	15	43668301	43668301	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014444.2	+1	provisional	p.S28	0.926	172	0%	134	40.3%	-	-	-	-	-	HMMPfam_Spc97_Spc98
TUBGCP4	27229	genome.wustl.edu	37	15	43672297	43672297	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014444.2	+1	provisional	p.I153L	1.000	275	0%	137	35%	-	-	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_Spc97_Spc98
TUBGCP4	27229	genome.wustl.edu	37	15	43687329	43687329	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014444.2	+1	provisional	p.E347*	1.000	830	0%	490	35.5%	-	-	-	-	-	HMMPfam_Spc97_Spc98
MAP1A	4130	genome.wustl.edu	37	15	43816024	43816024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002373.5	+1	reviewed	p.E785K	1.000	36	0%	40	32.5%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43818138	43818138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002373.5	+1	reviewed	p.E1489D	0.001	283	0%	94	47.9%	-	-	benign(0)	tolerated(1)	-	NULL
MAP1A	4130	genome.wustl.edu	37	15	43820259	43820259	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002373.5	+1	reviewed	p.F2196	1.000	51	0%	38	39.5%	-	-	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	43895447	43895447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153700.2	-1	reviewed	p.A1513E	1.000	230	0%	150	34.7%	-	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
STRC	161497	genome.wustl.edu	37	15	43902548	43902548	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153700.2	-1	reviewed	p.R1154*	0.994	818	0%	415	23.4%	-	-	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	44002886	44002886	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381686	-1	known	p.V1076	0.346	85	0%	64	17.2%	-	-	-	-	-	NULL
WDR76	79968	genome.wustl.edu	37	15	44149150	44149150	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024908.3	+1	validated	p.R400	0.998	214	0%	89	36%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
FRMD5	84978	genome.wustl.edu	37	15	44202115	44202115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032892.3	-1	validated	p.S131L	1.000	160	0%	69	40.6%	-	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
SPG11	80208	genome.wustl.edu	37	15	44855385	44855385	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.E2422D	0.926	304	0%	168	13.1%	-	-	possibly_damaging(0.63)	tolerated(1)	neutral(0.220)	NULL
SPG11	80208	genome.wustl.edu	37	15	44865724	44865724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427534	-1	known	p.S2076A	0.000	86	0%	50	48%	-	-	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44865794	44865794	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.L2052	0.869	135	0%	96	29.2%	-	-	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44903068	44903068	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.T1087	0.940	267	0%	140	27.1%	-	-	-	-	-	NULL
PATL2	197135	genome.wustl.edu	37	15	44960623	44960623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145112.1	-1	validated	p.E428K	0.967	371	0%	189	28.6%	-	-	benign(0.007)	tolerated(0.73)	neutral(0.002)	HMMPfam_PAT1
PATL2	197135	genome.wustl.edu	37	15	44962208	44962208	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145112.1	-1	validated	p.K245	1.000	308	0%	178	47.8%	-	-	-	-	-	NULL
PATL2	197135	genome.wustl.edu	37	15	44966425	44966425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145112.1	-1	validated	p.A76T	0.762	109	0%	56	48.2%	-	-	benign(0.01)	deleterious(0.04)	neutral(0.349)	NULL
DUOX2	50506	genome.wustl.edu	37	15	45398344	45398344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014080.4	-1	reviewed	p.K709N	1.000	119	0%	79	27.8%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
DUOX2	50506	genome.wustl.edu	37	15	45404059	45404059	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014080.4	-1	reviewed	p.F140	1.000	49	0%	34	32.4%	-	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
DUOX1	53905	genome.wustl.edu	37	15	45426080	45426080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017434.3	+1	reviewed	p.S26L	0.930	183	0%	102	33.3%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	superfamily_Heme-dependent peroxidases
DUOX1	53905	genome.wustl.edu	37	15	45431334	45431334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017434.3	+1	reviewed	p.R395Q	0.998	445	0%	253	30.4%	-	-	benign(0.262)	tolerated(0.25)	neutral(0.065)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
LOC100289438	100289438	genome.wustl.edu	37	15	45440142	45440142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343344.1	-1	model	p.V227I	0.413	422	0%	254	35.8%	-	-	-	-	-	NULL
LOC100289438	100289438	genome.wustl.edu	37	15	45440384	45440384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343344.1	-1	model	p.S186Y	0.000	130	0%	116	40.5%	-	-	-	-	-	NULL
SLC28A2	9153	genome.wustl.edu	37	15	45555328	45555328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004212.3	+1	validated	p.T111I	0.999	435	0%	226	44.2%	-	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
SLC28A2	9153	genome.wustl.edu	37	15	45556875	45556875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004212.3	+1	validated	p.S204L	1.000	557	0%	285	11.6%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Nucleos_tra2_N
SLC28A2	9153	genome.wustl.edu	37	15	45561666	45561666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004212.3	+1	validated	p.S500Y	0.998	451	0%	275	36.4%	-	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMPfam_Nucleos_tra2_C
HMGN2P46	283651	genome.wustl.edu	37	15	45847679	45847679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000313559	+1	known	p.D10A	0.015	92	0%	51	31.4%	-	-	-	-	-	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48062819	48062819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.R687*	0.998	190	0%	119	36.1%	-	-	-	-	-	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48519333	48519333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396577	+1	known	p.S229Y	1.000	441	0%	223	34.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
SLC12A1	6557	genome.wustl.edu	37	15	48533778	48533778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000338.2	+1	reviewed	p.G428R	0.949	478	0%	244	35.7%	-	-	possibly_damaging(0.807)	tolerated(0.09)	deleterious(0.601)	HMMPfam_AA_permease
FBN1	2200	genome.wustl.edu	37	15	48762954	48762954	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	e35-1	1.000	164	0%	95	40%	-	-	-	-	-	-
GALK2	2585	genome.wustl.edu	37	15	49509446	49509446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002044.2	+1	reviewed	p.L68I	0.996	234	0%	153	39.9%	-	-	benign(0.194)	tolerated(0.27)	neutral(0.052)	HMMPfam_GalKase_gal_bdg,superfamily_Ribosomal_S5_D2-typ_fold
C15orf33	196951	genome.wustl.edu	37	15	49833921	49833921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152647.2	-1	validated	p.E277A	1.000	107	0%	30	46.7%	-	-	probably_damaging(0.975)	tolerated(0.28)	neutral(0.449)	NULL
DTWD1	56986	genome.wustl.edu	37	15	49935705	49935705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144955.1	+1	validated	p.S282Y	1.000	75	0%	41	31.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DTW
ATP8B4	79895	genome.wustl.edu	37	15	50212512	50212512	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024837.2	-1	validated	p.A618	0.978	293	0%	196	33.7%	-	-	-	-	-	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP8B4	79895	genome.wustl.edu	37	15	50223394	50223394	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024837.2	-1	validated	p.E522*	1.000	464	0%	189	30.2%	-	-	-	-	-	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP8B4	79895	genome.wustl.edu	37	15	50279641	50279641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024837.2	-1	validated	p.R232I	1.000	288	0%	142	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
USP8	9101	genome.wustl.edu	37	15	50773906	50773906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128610.1	+1	validated	p.R483W	1.000	421	0%	153	39.2%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
USP8	9101	genome.wustl.edu	37	15	50782026	50782026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128610.1	+1	validated	p.R640Q	0.982	87	0%	29	44.8%	-	-	possibly_damaging(0.809)	deleterious(0.03)	deleterious(0.669)	NULL
USP8	9101	genome.wustl.edu	37	15	50788072	50788072	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128610.1	+1	validated	p.E896*	1.000	54	0%	29	13.8%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP50	373509	genome.wustl.edu	37	15	50833255	50833255	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203494.4	-1	validated	p.C222	0.854	226	0%	151	33.1%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
TRPM7	54822	genome.wustl.edu	37	15	50867138	50867138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017672.4	-1	reviewed	p.L1644I	1.000	367	0%	209	12.9%	-	-	possibly_damaging(0.506)	deleterious(0.03)	deleterious(0.534)	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,superfamily_Kinase_like
TRPM7	54822	genome.wustl.edu	37	15	50902041	50902041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017672.4	-1	reviewed	p.E800K	1.000	583	0%	250	23.6%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
SPPL2A	84888	genome.wustl.edu	37	15	51014369	51014369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032802.3	-1	reviewed	p.D427Y	1.000	305	0%	132	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
TNFAIP8L3	388121	genome.wustl.edu	37	15	51350081	51350081	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207381.2	-1	provisional	p.L292	0.734	71	0%	45	42.2%	-	-	-	-	-	HMMPfam_DUF758
CYP19A1	1588	genome.wustl.edu	37	15	51507430	51507430	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000103.3	-1	reviewed	e7-1	1.000	244	0%	100	34%	-	-	-	-	-	-
DMXL2	23312	genome.wustl.edu	37	15	51790759	51790759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.K1554N	1.000	151	0%	107	37.4%	-	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51792406	51792406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.I1005M	1.000	168	0%	97	40.2%	-	-	benign(0.113)	deleterious(0)	neutral(0.454)	HMMSmart_SM00320
DMXL2	23312	genome.wustl.edu	37	15	51828531	51828531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.H716N	1.000	524	0.4%	257	27.2%	-	-	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51830521	51830521	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.R412*	0.997	428	0%	218	38.1%	-	-	-	-	-	superfamily_WD40 repeat-like
DMXL2	23312	genome.wustl.edu	37	15	51834686	51834686	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.N317Y	1.000	237	0%	128	29.7%	-	-	probably_damaging(0.996)	tolerated(0.63)	neutral(0.465)	superfamily_WD40 repeat-like
LEO1	123169	genome.wustl.edu	37	15	52258037	52258037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138792.2	-1	provisional	p.E241D	1.000	350	0%	251	32.7%	-	-	benign(0.368)	tolerated(0.38)	neutral(0.135)	NULL
MAPK6	5597	genome.wustl.edu	37	15	52356578	52356578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002748.3	+1	reviewed	p.G516V	1.000	220	0%	88	29.5%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
MAPK6	5597	genome.wustl.edu	37	15	52357054	52357054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002748.3	+1	reviewed	p.E675K	0.998	92	0%	51	37.3%	-	-	benign(0.141)	deleterious(0)	neutral(0.457)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52622561	52622561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.N1490S	1.000	353	0%	207	29.5%	-	-	benign(0.187)	tolerated(0.09)	neutral(0.314)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52668737	52668737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.F743L	1.000	205	0%	114	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52688579	52688579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.E445D	0.987	207	0%	116	47.4%	-	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52689484	52689484	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.L411	1.000	204	0%	131	45.8%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52702567	52702567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.R240I	1.000	183	0%	89	39.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM214A	56204	genome.wustl.edu	37	15	52876966	52876966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019600.2	-1	validated	p.L1018S	1.000	532	0%	337	32.6%	-	-	possibly_damaging(0.559)	tolerated(0.12)	neutral(0.451)	NULL
FAM214A	56204	genome.wustl.edu	37	15	52901775	52901775	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019600.2	-1	validated	p.R446*	0.001	328	0%	157	31.8%	-	-	-	-	-	NULL
ONECUT1	3175	genome.wustl.edu	37	15	53081784	53081784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004498.1	-1	provisional	p.P100S	1.000	326	0%	151	41.1%	-	-	benign(0)	tolerated(1)	-	NULL
WDR72	256764	genome.wustl.edu	37	15	54005024	54005024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182758.2	-1	validated	p.R219Q	1.000	328	0.3%	138	29%	-	-	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	superfamily_WD40 repeat-like
WDR72	256764	genome.wustl.edu	37	15	54005064	54005064	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182758.2	-1	validated	p.E206*	1.000	289	0%	113	34.5%	-	-	-	-	-	superfamily_WD40 repeat-like
UNC13C	440279	genome.wustl.edu	37	15	54305142	54305142	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.I14	0.644	175	0%	78	34.6%	-	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54306066	54306066	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.R322S	0.998	233	0%	104	40.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54307445	54307445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.R782Q	1.000	224	0%	124	37.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54916116	54916116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.N2108S	1.000	451	0%	179	11.7%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
UNC13C	440279	genome.wustl.edu	37	15	54919106	54919106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.R2147Q	1.000	314	0%	149	34.9%	-	-	probably_damaging(0.96)	tolerated(0.07)	deleterious(0.722)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CCPG1	9236	genome.wustl.edu	37	15	55652650	55652650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004748.3	-1	validated	p.E441K	1.000	534	0.2%	303	38.3%	-	-	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	NULL
CCPG1	9236	genome.wustl.edu	37	15	55652974	55652974	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004748.3	-1	validated	p.E333*	1.000	430	0%	235	37.4%	-	-	-	-	-	NULL
CCPG1	9236	genome.wustl.edu	37	15	55669172	55669172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004748.3	-1	validated	p.Q143H	0.882	178	0%	97	42.3%	-	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
DYX1C1	161582	genome.wustl.edu	37	15	55742537	55742537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130810.2	-1	reviewed	p.E222D	0.098	189	0%	97	29.9%	-	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
DYX1C1	161582	genome.wustl.edu	37	15	55783444	55783444	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130810.2	-1	reviewed	p.E94	1.000	620	0%	343	35%	-	-	-	-	-	superfamily_HSP20-like chaperones
PRTG	283659	genome.wustl.edu	37	15	55971563	55971563	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173814.4	-1	validated	p.G352*	1.000	353	0%	194	32.5%	-	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
PRTG	283659	genome.wustl.edu	37	15	55972381	55972381	+	Missense_Mutation	SNP	G	G	A	rs186873190	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173814.4	-1	validated	p.R282W	0.998	189	0%	71	23.9%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
PRTG	283659	genome.wustl.edu	37	15	56032722	56032722	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173814.4	-1	validated	p.I85	1.000	308	0%	181	34.3%	-	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NEDD4	4734	genome.wustl.edu	37	15	56132879	56132879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198400.2	-1	validated	p.E976K	1.000	372	0%	183	27.9%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
NEDD4	4734	genome.wustl.edu	37	15	56208920	56208920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198400.2	-1	validated	p.R37I	0.629	289	0%	170	30.6%	-	-	unknown(0)	deleterious(0)	-	NULL
NEDD4	4734	genome.wustl.edu	37	15	56243600	56243600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006154.2	-1	validated	p.K71E	1.000	113	0%	47	34%	-	-	possibly_damaging(0.939)	tolerated(0.16)	neutral(0.444)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TEX9	374618	genome.wustl.edu	37	15	56657819	56657819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198524.1	+1	provisional	p.Q24*	0.002	249	0%	104	21.2%	-	-	-	-	-	NULL
TEX9	374618	genome.wustl.edu	37	15	56686948	56686948	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198524.1	+1	provisional	p.S248	1.000	127	0%	41	31.7%	-	-	-	-	-	NULL
MNS1	55329	genome.wustl.edu	37	15	56721305	56721305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018365.2	-1	reviewed	p.E494D	0.000	349	0%	157	11.5%	-	-	possibly_damaging(0.49)	tolerated(0.51)	neutral(0.172)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56993103	56993103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002844.1	-1	validated	p.A137T	0.376	243	0.4%	149	41.6%	-	-	-	-	-	NULL
CGNL1	84952	genome.wustl.edu	37	15	57744378	57744378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032866.3	+1	validated	p.A649T	0.041	357	0%	103	33%	-	-	benign(0.003)	tolerated(0.59)	neutral(0.004)	NULL
GCOM1	145781	genome.wustl.edu	37	15	57913876	57913876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018090.1	+1	reviewed	p.R130Q	0.461	284	0%	121	39.7%	-	-	benign(0.009)	tolerated(0.57)	neutral(0.007)	NULL
ADAM10	102	genome.wustl.edu	37	15	58919936	58919936	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110.2	-1	reviewed	p.S441	1.000	534	0.2%	276	43.8%	-	-	-	-	-	HMMPfam_Reprolysin,superfamily_SSF55486
ADAM10	102	genome.wustl.edu	37	15	59009902	59009902	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110.2	-1	reviewed	p.K27T	1.000	191	0%	125	38.4%	-	-	possibly_damaging(0.616)	tolerated(0.07)	deleterious(0.533)	HMMPfam_Pep_M12B_propep
FAM63B	54629	genome.wustl.edu	37	15	59064145	59064145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040450.1	+1	validated	p.S184Y	1.000	83	0%	43	32.6%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SLTM	79811	genome.wustl.edu	37	15	59185145	59185145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024755.2	-1	validated	p.E617K	1.000	574	0%	302	31.1%	-	-	unknown(0)	deleterious(0.03)	-	NULL
RNF111	54778	genome.wustl.edu	37	15	59323499	59323499	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017610.6	+1	reviewed	p.E160*	1.000	281	0%	151	39.1%	-	-	-	-	-	NULL
RNF111	54778	genome.wustl.edu	37	15	59384797	59384797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017610.6	+1	reviewed	p.C934F	1.000	526	0%	190	27.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
FAM81A	145773	genome.wustl.edu	37	15	59752479	59752479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454797	+1	known	p.S120Y	0.000	119	0%	63	34.9%	-	-	-	-	-	NULL
GCNT3	9245	genome.wustl.edu	37	15	59911741	59911741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004751.2	+1	reviewed	p.G435V	1.000	156	0%	106	37.7%	-	-	possibly_damaging(0.885)	tolerated(0.06)	deleterious(0.668)	NULL
FOXB1	27023	genome.wustl.edu	37	15	60297446	60297446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012182.2	+1	validated	p.D95G	1.000	42	0%	37	51.4%	-	-	possibly_damaging(0.515)	deleterious(0.03)	deleterious(0.538)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
ANXA2	302	genome.wustl.edu	37	15	60641361	60641361	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002858.2	-1	reviewed	p.I309	1.000	225	0%	112	43.8%	-	-	-	-	-	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
ANXA2	302	genome.wustl.edu	37	15	60653157	60653157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002858.2	-1	reviewed	p.L132I	1.000	218	0%	104	34.6%	-	-	benign(0.055)	tolerated(0.3)	neutral(0.032)	superfamily_Annexin,HMMPfam_Annexin
NARG2	79664	genome.wustl.edu	37	15	60745904	60745904	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024611.4	-1	validated	p.I341	0.934	323	0%	133	39.8%	-	-	-	-	-	NULL
NARG2	79664	genome.wustl.edu	37	15	60745934	60745934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024611.4	-1	validated	p.K331N	0.993	298	0%	124	22.6%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
NARG2	79664	genome.wustl.edu	37	15	60747576	60747576	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024611.4	-1	validated	p.D244	0.002	458	0%	234	12.8%	-	-	-	-	-	NULL
RORA	6095	genome.wustl.edu	37	15	60793217	60793217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134260.2	-1	reviewed	p.S445F	1.000	364	0%	165	30.3%	-	-	possibly_damaging(0.886)	deleterious(0.04)	deleterious(0.696)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
RORA	6095	genome.wustl.edu	37	15	60907124	60907124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002943.3	-1	reviewed	p.F80L	0.010	89	0%	36	33.3%	-	-	benign(0)	tolerated(1)	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62173772	62173772	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.L3256V	0.934	207	0%	101	50.5%	-	-	possibly_damaging(0.663)	tolerated(0.1)	deleterious(0.521)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62212707	62212707	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.N2401T	1.000	215	0%	102	33.3%	-	-	possibly_damaging(0.8)	deleterious(0.03)	deleterious(0.665)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62234000	62234000	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.D1805	0.998	159	0%	73	24.7%	-	-	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62256041	62256041	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.K1108	1.000	342	0%	156	26.9%	-	-	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62261555	62261555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.D952Y	0.965	289	0%	127	37.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP3	9960	genome.wustl.edu	37	15	63848898	63848898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006537.2	+1	validated	p.R134K	1.000	154	0%	46	32.6%	-	-	benign(0.064)	tolerated(0.09)	neutral(0.300)	NULL
HERC1	8925	genome.wustl.edu	37	15	63908094	63908094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.G4656V	1.000	214	0%	127	35.4%	-	-	probably_damaging(1)	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC1	8925	genome.wustl.edu	37	15	64010840	64010840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.R1304Q	1.000	335	0%	191	29.8%	-	-	probably_damaging(0.997)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	64041896	64041896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.R666K	1.000	200	0%	97	20.6%	-	-	benign(0.227)	-	-	superfamily_RCC1/BLIP-II
CSNK1G1	53944	genome.wustl.edu	37	15	64508831	64508831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022048.3	-1	validated	p.L125S	1.000	162	0%	81	43.2%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TRIP4	9325	genome.wustl.edu	37	15	64737306	64737306	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016213.3	+1	validated	p.I559	1.000	163	0%	59	13.6%	-	-	-	-	-	NULL
ANKDD1A	348094	genome.wustl.edu	37	15	65239790	65239790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182703.3	+1	validated	p.D443G	0.000	51	0%	55	38.2%	-	-	benign(0.069)	tolerated(0.26)	neutral(0.038)	HMMPfam_Death,superfamily_DEATH_like
CLPX	10845	genome.wustl.edu	37	15	65456392	65456392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006660.3	-1	provisional	p.E216D	1.000	336	0%	149	22.8%	-	-	probably_damaging(0.971)	tolerated(0.15)	deleterious(0.654)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IGDCC3	9543	genome.wustl.edu	37	15	65621806	65621806	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004884.3	-1	validated	p.E709	0.984	36	0%	21	52.4%	-	-	-	-	-	NULL
DPP8	54878	genome.wustl.edu	37	15	65793089	65793089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197960.2	-1	reviewed	p.R150Q	1.000	471	0%	286	38.5%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
PTPLAD1	51495	genome.wustl.edu	37	15	65862533	65862533	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016395.2	+1	validated	p.E255D	1.000	951	0%	462	36.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PTPLA
DENND4A	10260	genome.wustl.edu	37	15	66044943	66044943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144823.1	-1	validated	p.R112I	1.000	127	0%	59	30.5%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
DIS3L	115752	genome.wustl.edu	37	15	66607521	66607521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133375.3	+1	validated	p.S238L	0.000	135	0%	74	40.5%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
DIS3L	115752	genome.wustl.edu	37	15	66621407	66621407	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133375.3	+1	validated	p.S684	0.026	138	0%	116	38.8%	-	-	-	-	-	HMMPfam_RNB
DIS3L	115752	genome.wustl.edu	37	15	66625175	66625175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133375.3	+1	validated	p.R845Q	0.563	168	0%	94	34%	-	-	probably_damaging(0.997)	tolerated(0.31)	deleterious(0.493)	NULL
TIPIN	54962	genome.wustl.edu	37	15	66633692	66633692	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017858.2	-1	validated	p.E160*	0.679	187	0%	139	28.1%	-	-	-	-	-	NULL
MAP2K1	5604	genome.wustl.edu	37	15	66779598	66779598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002755.3	+1	reviewed	p.I310L	1.000	360	0%	165	37.6%	-	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZWILCH	55055	genome.wustl.edu	37	15	66816079	66816079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017975.3	+1	validated	p.F271C	1.000	201	0%	98	31.6%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_DUF2352
ZWILCH	55055	genome.wustl.edu	37	15	66838975	66838975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017975.3	+1	validated	p.F578L	0.106	272	0%	147	24.5%	-	-	benign(0.005)	tolerated(0.4)	neutral(0.016)	HMMPfam_DUF2352
FEM1B	10116	genome.wustl.edu	37	15	68582151	68582151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015322.3	+1	provisional	p.K152R	1.000	157	0%	96	39.6%	-	-	possibly_damaging(0.913)	tolerated(0.88)	neutral(0.364)	HMMPfam_Ank,superfamily_ANK
FEM1B	10116	genome.wustl.edu	37	15	68583403	68583403	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015322.3	+1	provisional	p.T569	0.919	339	0%	178	30.9%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ITGA11	22801	genome.wustl.edu	37	15	68631911	68631911	+	Silent	SNP	C	C	A	rs144305058	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004439.1	-1	reviewed	p.G401	0.642	116	0%	63	14.3%	-	-	-	-	-	superfamily_Integrin alpha N-terminal domain
KIF23	9493	genome.wustl.edu	37	15	69714463	69714463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138555.1	+1	reviewed	p.R150L	1.000	234	0%	138	31.9%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF23	9493	genome.wustl.edu	37	15	69718709	69718709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138555.1	+1	reviewed	p.L294F	1.000	229	0%	149	34.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
TLE3	7090	genome.wustl.edu	37	15	70368486	70368486	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005078.2	-1	validated	p.A82	0.971	216	0%	107	33.6%	-	-	-	-	-	HMMPfam_TLE_N
THAP10	56906	genome.wustl.edu	37	15	71184269	71184269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020147.2	-1	provisional	p.L115F	0.000	61	0%	43	37.2%	-	-	benign(0.005)	tolerated(0.25)	neutral(0.037)	NULL
LRRC49	54839	genome.wustl.edu	37	15	71341784	71341784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017691.2	+1	validated	p.I632V	0.055	98	0%	49	32.7%	-	-	benign(0)	tolerated(1)	-	NULL
MYO9A	4649	genome.wustl.edu	37	15	72172100	72172100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.R1901W	1.000	395	0%	215	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO9A	4649	genome.wustl.edu	37	15	72190136	72190136	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.E1570*	0.996	201	0%	134	38.1%	-	-	-	-	-	NULL
MYO9A	4649	genome.wustl.edu	37	15	72191017	72191017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.R1276I	1.000	427	0%	247	32%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PARP6	56965	genome.wustl.edu	37	15	72534313	72534313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020214.2	-1	provisional	p.K573N	1.000	144	0%	67	38.8%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	superfamily_ADP-ribosylation
TMEM202	338949	genome.wustl.edu	37	15	72699537	72699537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080462.1	+1	provisional	p.D200N	0.001	369	0%	184	38%	-	-	possibly_damaging(0.933)	deleterious(0.02)	deleterious(0.762)	NULL
ARIH1	25820	genome.wustl.edu	37	15	72853840	72853840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005744.3	+1	validated	p.S252A	1.000	232	0%	82	35.4%	-	-	benign(0.099)	tolerated(0.5)	neutral(0.018)	superfamily_RING/U-box
MIR630	693215	genome.wustl.edu	37	15	72879644	72879644	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384957	+1	known	NULL	0.001	337	0%	167	31.7%	-	-	-	-	-	-
NEO1	4756	genome.wustl.edu	37	15	73590697	73590697	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002499.3	+1	validated	p.R1304*	1.000	196	0%	116	37.1%	-	-	-	-	-	HMMPfam_Neogenin_C
HCN4	10021	genome.wustl.edu	37	15	73615999	73615999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005477.2	-1	reviewed	p.S812Y	0.022	75	0%	38	34.2%	-	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
HCN4	10021	genome.wustl.edu	37	15	73616469	73616469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005477.2	-1	reviewed	p.A702T	1.000	61	0%	35	40%	-	-	benign(0.012)	tolerated(0.12)	neutral(0.261)	HMMSmart_cNMP,superfamily_cNMP_binding
HCN4	10021	genome.wustl.edu	37	15	73624577	73624577	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005477.2	-1	reviewed	p.I422	0.994	133	0%	105	10.5%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
ISLR2	57611	genome.wustl.edu	37	15	74425505	74425505	+	Missense_Mutation	SNP	C	C	A	rs3889598	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130136.1	+1	validated	p.S137Y	0.881	40	0%	25	36%	-	-	benign(0.071)	tolerated(0.08)	neutral(0.305)	HMMPfam_LRR_1,superfamily_SSF52058
ISLR	3671	genome.wustl.edu	37	15	74467595	74467595	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005545.3	+1	validated	p.N132	0.921	143	0%	89	37.1%	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
CCDC33	80125	genome.wustl.edu	37	15	74623007	74623007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025055.3	+1	validated	p.S487F	0.017	212	0%	78	23.1%	-	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
SEMA7A	8482	genome.wustl.edu	37	15	74704330	74704330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003612.3	-1	reviewed	p.V440L	1.000	33	0%	20	40%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
EDC3	80153	genome.wustl.edu	37	15	74948297	74948297	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142443.1	-1	validated	p.I199	0.999	411	0%	291	31.3%	-	-	-	-	-	HMMPfam_DFDF
CYP1A1	1543	genome.wustl.edu	37	15	75015209	75015209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000499.3	-1	reviewed	p.R77Q	0.985	106	0%	65	32.3%	-	-	benign(0.173)	tolerated(0.62)	neutral(0.020)	HMMPfam_p450,superfamily_Cytochrome P450
ENSG00000187812	0	genome.wustl.edu	37	15	76073206	76073206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000395215	+1	known	p.E152K	0.999	258	0%	156	32.1%	-	-	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	NULL
ENSG00000167141	0	genome.wustl.edu	37	15	76079014	76079014	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338857	+1	known	p.E211*	0.017	110	0%	80	27.5%	-	-	-	-	-	NULL
LOC730058	730058	genome.wustl.edu	37	15	76084998	76084998	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719538.1	-1	model	p.S37	0.977	53	0%	49	44.9%	-	-	-	-	-	NULL
FBXO22	26263	genome.wustl.edu	37	15	76209598	76209598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147188.1	+1	reviewed	p.R164Q	1.000	203	0%	88	34.1%	-	-	benign(0.014)	tolerated(0.51)	neutral(0.009)	NULL
ISL2	64843	genome.wustl.edu	37	15	76630607	76630607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145805.1	+1	provisional	p.K88T	1.000	12	0.000	8	0.750	-	-	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LINGO1	84894	genome.wustl.edu	37	15	77907078	77907078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032808.5	-1	validated	p.R391W	0.995	63	0%	57	12.3%	-	-	possibly_damaging(0.927)	deleterious(0.01)	deleterious(0.780)	NULL
SH2D7	646892	genome.wustl.edu	37	15	78385075	78385075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101404.1	+1	provisional	p.P50H	0.997	134	0%	105	39%	-	-	possibly_damaging(0.852)	deleterious(0.01)	deleterious(0.733)	HMMSmart_SH2,superfamily_SSF55550
IREB2	3658	genome.wustl.edu	37	15	78789502	78789502	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004136.2	+1	validated	p.K877T	1.000	444	0%	181	51.4%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Aconitase_C,superfamily_Aconitase
AGPHD1	123688	genome.wustl.edu	37	15	78825714	78825714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013619.2	+1	validated	p.I275S	1.000	304	0%	181	42.5%	-	-	benign(0.044)	tolerated(0.19)	neutral(0.052)	HMMPfam_APH,superfamily_Protein kinase-like (PK-like)
CHRNA5	1138	genome.wustl.edu	37	15	78880708	78880708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000745.2	+1	provisional	p.K119R	1.000	350	0%	139	39.6%	-	-	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
CHRNA5	1138	genome.wustl.edu	37	15	78880761	78880761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000745.2	+1	provisional	p.D137N	1.000	213	0%	87	12.6%	-	-	possibly_damaging(0.568)	tolerated(1)	neutral(0.195)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
CHRNA5	1138	genome.wustl.edu	37	15	78882598	78882598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000745.2	+1	provisional	p.L289F	0.998	316	0%	207	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CTSH	1512	genome.wustl.edu	37	15	79224774	79224774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004390.3	-1	reviewed	p.F144L	1.000	106	0%	72	23.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
RASGRF1	5923	genome.wustl.edu	37	15	79310205	79310205	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002891.4	-1	reviewed	p.I550	0.430	315	0%	192	14.6%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KIAA1024	23251	genome.wustl.edu	37	15	79748657	79748657	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015206.2	+1	validated	p.L56	0.389	199	0.5%	121	13.2%	-	-	-	-	-	NULL
KIAA1024	23251	genome.wustl.edu	37	15	79749930	79749930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015206.2	+1	validated	p.V481M	0.001	119	0%	82	32.9%	-	-	benign(0.28)	tolerated(0.08)	neutral(0.386)	NULL
FAM108C1	58489	genome.wustl.edu	37	15	81041981	81041981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021214.1	+1	validated	p.R240C	1.000	383	0%	242	40.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_alpha/beta-Hydrolases
KIAA1199	57214	genome.wustl.edu	37	15	81173252	81173252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018689.1	+1	validated	p.G131D	0.000	233	0%	126	11.1%	-	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_G8
KIAA1199	57214	genome.wustl.edu	37	15	81199155	81199155	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018689.1	+1	validated	p.F521	0.938	314	0%	198	39.4%	-	-	-	-	-	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81213399	81213399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018689.1	+1	validated	p.N677S	1.000	294	0%	172	33.7%	-	-	possibly_damaging(0.838)	deleterious(0.05)	deleterious(0.665)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83333196	83333196	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004644.3	-1	validated	p.S709	0.534	330	0.3%	190	37.4%	-	-	-	-	-	NULL
AP3B2	8120	genome.wustl.edu	37	15	83334225	83334225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004644.3	-1	validated	p.S652Y	1.000	179	0%	113	38.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83345366	83345366	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004644.3	-1	validated	p.I504	1.000	164	0%	104	32.7%	-	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
FSD2	123722	genome.wustl.edu	37	15	83455641	83455641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007122.2	-1	provisional	p.E168*	1.000	249	0%	146	37%	-	-	-	-	-	NULL
SH3GL3	6457	genome.wustl.edu	37	15	84237405	84237405	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003027.3	+1	validated	p.L104	0.005	171	0%	80	41.2%	-	-	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
SH3GL3	6457	genome.wustl.edu	37	15	84241351	84241351	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003027.3	+1	validated	p.K122	0.985	301	0%	110	30.9%	-	-	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
ADAMTSL3	57188	genome.wustl.edu	37	15	84685191	84685191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.L1405I	0.004	322	0%	145	35.2%	-	-	benign(0.02)	tolerated(0.13)	neutral(0.254)	NULL
ALPK3	57538	genome.wustl.edu	37	15	85383894	85383894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.A664T	0.000	40	0%	29	48.3%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
ALPK3	57538	genome.wustl.edu	37	15	85402505	85402505	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.E1485	1.000	120	0%	126	31.7%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
AKAP13	11214	genome.wustl.edu	37	15	86270685	86270685	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.E2364*	1.000	336	0%	138	38.4%	-	-	-	-	-	NULL
AGBL1	123624	genome.wustl.edu	37	15	86686960	86686960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	p.S3I	1.000	216	0%	145	37.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
AGBL1	123624	genome.wustl.edu	37	15	86838485	86838485	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	e15-1	1.000	126	0%	62	33.9%	-	-	-	-	-	-
AGBL1	123624	genome.wustl.edu	37	15	87099490	87099490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	p.R965G	0.008	281	0%	157	29.9%	-	-	possibly_damaging(0.878)	tolerated(0.17)	neutral(0.401)	HMMPfam_Peptidase_M14
NTRK3	4916	genome.wustl.edu	37	15	88799191	88799191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012338.1	-1	reviewed	p.S65N	1.000	523	0.2%	319	29.8%	-	-	benign(0.004)	tolerated(0.06)	neutral(0.323)	NULL
ACAN	176	genome.wustl.edu	37	15	89401708	89401708	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013227.3	+1	reviewed	p.L1849	1.000	57	0%	51	15.7%	-	-	-	-	-	NULL
MFGE8	4240	genome.wustl.edu	37	15	89449889	89449889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005928.2	-1	validated	p.D170N	0.620	113	0%	69	31.9%	-	-	benign(0.039)	tolerated(0.38)	neutral(0.020)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
POLG	5428	genome.wustl.edu	37	15	89876788	89876788	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126131.1	-1	reviewed	p.G66	0.826	23	0%	21	38.1%	-	-	-	-	-	NULL
RHCG	51458	genome.wustl.edu	37	15	90020378	90020378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016321.1	-1	provisional	p.G391E	0.995	172	0%	109	30.3%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
C15orf42	90381	genome.wustl.edu	37	15	90152048	90152048	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.R913*	0.998	208	0%	103	38.8%	-	-	-	-	-	NULL
PEX11A	8800	genome.wustl.edu	37	15	90226823	90226823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003847.1	-1	provisional	p.L177F	1.000	321	0%	176	33.5%	-	-	possibly_damaging(0.594)	tolerated(0.32)	neutral(0.229)	HMMPfam_PEX11
WDR93	56964	genome.wustl.edu	37	15	90245189	90245189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020212.1	+1	provisional	p.S71Y	0.014	150	0%	86	10.5%	-	-	possibly_damaging(0.509)	deleterious(0.05)	deleterious(0.516)	NULL
WDR93	56964	genome.wustl.edu	37	15	90272980	90272980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020212.1	+1	provisional	p.R397Q	0.605	267	0%	146	21.2%	-	-	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
ZNF710	374655	genome.wustl.edu	37	15	90611131	90611131	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198526.2	+1	validated	p.F254	0.001	25	0%	29	48.3%	-	-	-	-	-	NULL
IDH2	3418	genome.wustl.edu	37	15	90630804	90630804	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002168.2	-1	reviewed	p.I228L	1.000	169	0%	138	44.9%	-	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
SEMA4B	10509	genome.wustl.edu	37	15	90771512	90771512	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020210.3	+1	validated	p.E717	1.000	193	0%	146	34.2%	-	-	-	-	-	NULL
C15orf58	390637	genome.wustl.edu	37	15	90784745	90784745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013657.2	+1	validated	p.R202H	1.000	54	0%	52	19.2%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	PatternScan_PHOSPHOPANTETHEINE
NGRN	51335	genome.wustl.edu	37	15	90814700	90814700	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033088.1	+1	validated	p.N186Y	0.000	122	0%	56	25%	-	-	benign(0.163)	tolerated(0.06)	neutral(0.337)	HMMPfam_Neugrin
IQGAP1	8826	genome.wustl.edu	37	15	91017875	91017875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.L912F	1.000	216	0%	125	37.6%	-	-	probably_damaging(0.988)	tolerated(0.06)	deleterious(0.760)	NULL
IQGAP1	8826	genome.wustl.edu	37	15	91030268	91030268	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.F1369	1.000	206	1%	100	38%	-	-	-	-	-	NULL
BLM	641	genome.wustl.edu	37	15	91346787	91346787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000057.2	+1	reviewed	p.G1132V	1.000	201	0%	101	35.6%	-	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_RQC,superfamily_SSF52540
FES	2242	genome.wustl.edu	37	15	91438772	91438772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002005.3	+1	reviewed	p.R818Q	0.985	59	0%	34	38.2%	-	-	possibly_damaging(0.738)	tolerated(0.22)	neutral(0.312)	superfamily_Protein kinase-like (PK-like)
VPS33B	26276	genome.wustl.edu	37	15	91553074	91553074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018668.3	-1	reviewed	p.F120L	1.000	431	0%	181	34.8%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
SLCO3A1	28232	genome.wustl.edu	37	15	92690271	92690271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013272.3	+1	validated	p.P524S	1.000	122	0%	83	14.5%	-	-	probably_damaging(1)	tolerated(0.39)	deleterious(0.516)	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors
SLCO3A1	28232	genome.wustl.edu	37	15	92690373	92690373	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013272.3	+1	validated	p.V558L	1.000	90	0%	74	31.1%	-	-	probably_damaging(0.987)	tolerated(1)	neutral(0.436)	HMMPfam_OATP,superfamily_MFS general substrate transporter
FAM174B	400451	genome.wustl.edu	37	15	93173457	93173457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207446.2	-1	validated	p.D155N	1.000	361	0%	190	36.8%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_DUF1180
CHD2	1106	genome.wustl.edu	37	15	93567925	93567925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001271.3	+1	reviewed	p.R1826Q	1.000	237	0%	158	18.4%	-	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
MCTP2	55784	genome.wustl.edu	37	15	94913386	94913386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018349.3	+1	validated	p.D520G	1.000	384	0.3%	163	36.8%	-	-	benign(0.002)	tolerated(1)	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MCTP2	55784	genome.wustl.edu	37	15	95013571	95013571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018349.3	+1	validated	p.N790K	1.000	386	0%	311	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NR2F2	7026	genome.wustl.edu	37	15	96880586	96880586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021005.3	+1	reviewed	p.G327D	1.000	114	0%	57	36.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
FAM149B2	100113400	genome.wustl.edu	37	15	97301714	97301714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398303	+1	known	p.R267Q	0.011	188	0%	124	43.5%	-	-	-	-	-	NULL
SYNM	23336	genome.wustl.edu	37	15	99671092	99671092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000336292	+1	known	p.D842N	0.518	155	0%	90	44.4%	-	-	possibly_damaging(0.773)	deleterious(0)	deleterious(0.732)	NULL
SYNM	23336	genome.wustl.edu	37	15	99671320	99671320	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000336292	+1	known	p.E918*	0.031	106	0%	63	38.1%	-	-	-	-	-	NULL
SYNM	23336	genome.wustl.edu	37	15	99671341	99671341	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000336292	+1	known	p.E925*	1.000	99	0%	59	30.5%	-	-	-	-	-	NULL
HSP90B2P	7190	genome.wustl.edu	37	15	99799238	99799238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378906	+1	known	p.K130N	1.000	160	0%	109	36.7%	-	-	-	-	-	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
LRRC28	123355	genome.wustl.edu	37	15	99892665	99892665	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144598.2	+1	provisional	p.I228	0.998	248	0%	132	40.2%	-	-	-	-	-	superfamily_L domain-like
LYSMD4	145748	genome.wustl.edu	37	15	100269634	100269634	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152449.2	-1	validated	p.T196	0.001	119	0%	64	32.8%	-	-	-	-	-	NULL
ADAMTS17	170691	genome.wustl.edu	37	15	100591855	100591855	+	Missense_Mutation	SNP	C	C	T	rs139385294	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139057.2	-1	reviewed	p.E793K	1.000	464	0%	222	35.1%	-	-	probably_damaging(0.955)	deleterious(0.03)	deleterious(0.763)	NULL
ADAMTS17	170691	genome.wustl.edu	37	15	100636642	100636642	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139057.2	-1	reviewed	p.E686*	1.000	70	0%	82	11%	-	-	-	-	-	NULL
LINS	55180	genome.wustl.edu	37	15	101114038	101114038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040614.1	-1	reviewed	p.S347L	0.326	188	0%	102	31.4%	-	-	benign(0)	tolerated(1)	-	NULL
LINS	55180	genome.wustl.edu	37	15	101114441	101114441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040614.1	-1	reviewed	p.L213I	0.590	36	0%	24	62.5%	-	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
LINS	55180	genome.wustl.edu	37	15	101120817	101120817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040614.1	-1	reviewed	p.K77N	0.002	294	0%	201	12.4%	-	-	benign(0.004)	tolerated(0.12)	neutral(0.261)	NULL
ALDH1A3	220	genome.wustl.edu	37	15	101440938	101440938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000693.2	+1	reviewed	p.D348N	0.998	146	0%	74	28.4%	-	-	benign(0.017)	tolerated(0.08)	neutral(0.300)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
LRRK1	79705	genome.wustl.edu	37	15	101602890	101602890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.K1637Q	0.967	208	0%	119	37.8%	-	-	possibly_damaging(0.869)	deleterious(0.02)	deleterious(0.720)	NULL
LRRK1	79705	genome.wustl.edu	37	15	101605790	101605790	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.I1716	0.019	159	0%	103	29.1%	-	-	-	-	-	NULL
CHSY1	22856	genome.wustl.edu	37	15	101717801	101717801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000254190	-1	known	p.T734M	0.992	128	0%	99	36.4%	-	-	possibly_damaging(0.771)	deleterious(0.03)	deleterious(0.651)	HMMPfam_CHGN,superfamily_SSF53448
OR4F15	390649	genome.wustl.edu	37	15	102359009	102359009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001674.1	+1	provisional	p.S207Y	0.001	870	0%	403	35.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AXIN1	8312	genome.wustl.edu	37	16	396834	396834	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003502.2	-1	reviewed	p.S64	0.005	95	1.1%	79	41.8%	-	-	-	-	-	NULL
TMEM8A	58986	genome.wustl.edu	37	16	424230	424230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021259.2	-1	validated	p.F582L	1.000	56	0%	52	26.9%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
TMEM8A	58986	genome.wustl.edu	37	16	427758	427758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021259.2	-1	validated	p.R71H	0.039	61	0%	41	36.6%	-	-	benign(0.175)	tolerated(0.27)	neutral(0.050)	NULL
RAB11FIP3	9727	genome.wustl.edu	37	16	532623	532623	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014700.3	+1	validated	p.P334	0.305	55	0%	35	31.4%	-	-	-	-	-	NULL
NHLRC4	283948	genome.wustl.edu	37	16	618232	618232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176677.1	+1	provisional	p.V62A	0.001	75	0%	33	42.4%	-	-	benign(0.102)	deleterious(0.01)	neutral(0.414)	HMMPfam_NHL,superfamily_SSF101898
WDR24	84219	genome.wustl.edu	37	16	735512	735512	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032259.2	-1	provisional	p.L588	1.000	28	0%	24	33.3%	-	-	-	-	-	NULL
MSLNL	401827	genome.wustl.edu	37	16	824962	824962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025190.1	-1	provisional	p.M537T	1.000	11	0%	14	35.7%	-	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	HMMPfam_Mesothelin
CHTF18	63922	genome.wustl.edu	37	16	846780	846780	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022092.2	+1	validated	p.T840	1.000	31	0%	21	38.1%	-	-	-	-	-	NULL
CHTF18	63922	genome.wustl.edu	37	16	847922	847922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022092.2	+1	validated	p.E959K	1.000	50	0%	28	39.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LMF1	64788	genome.wustl.edu	37	16	929672	929672	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022773.2	-1	reviewed	p.F265	0.013	138	0%	78	35.9%	-	-	-	-	-	HMMPfam_DUF1222
LMF1	64788	genome.wustl.edu	37	16	984251	984251	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022773.2	-1	reviewed	p.Y169	1.000	219	0%	75	41.3%	-	-	-	-	-	HMMPfam_DUF1222
CACNA1H	8912	genome.wustl.edu	37	16	1251766	1251766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021098.2	+1	reviewed	p.R439H	1.000	43	0%	56	32.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CACNA1H	8912	genome.wustl.edu	37	16	1261243	1261243	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021098.2	+1	reviewed	p.I1433	0.997	195	0%	98	31.6%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
BAIAP3	8938	genome.wustl.edu	37	16	1394475	1394475	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440627	+1	known	p.Q177*	0.899	175	0%	145	33.8%	-	-	-	-	-	NULL
BAIAP3	8938	genome.wustl.edu	37	16	1395076	1395076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003933.3	+1	reviewed	p.R674H	0.998	86	0%	57	43.9%	-	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
CLCN7	1186	genome.wustl.edu	37	16	1503841	1503841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001287.4	-1	reviewed	p.R403Q	1.000	98	0%	61	21.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
CLCN7	1186	genome.wustl.edu	37	16	1515300	1515300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001287.4	-1	reviewed	p.S61G	0.975	168	0%	83	32.5%	-	-	unknown(0)	tolerated(0.09)	-	NULL
CRAMP1L	57585	genome.wustl.edu	37	16	1706521	1706521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020825.3	+1	validated	p.Q588R	0.000	25	0%	10	50%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
HN1L	90861	genome.wustl.edu	37	16	1748827	1748827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144570.2	+1	validated	p.P134L	0.000	90	0%	60	36.7%	-	-	benign(0.167)	tolerated(0.21)	neutral(0.059)	NULL
NUBP2	10101	genome.wustl.edu	37	16	1836639	1836639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012225.2	+1	validated	p.R40C	1.000	51	0%	34	41.2%	-	-	benign(0.007)	tolerated(0.14)	neutral(0.249)	superfamily_SSF52540
C16orf73	254528	genome.wustl.edu	37	16	1887814	1887814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000325962	-1	known	p.L426I	1.000	166	0%	53	24.5%	-	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
C16orf73	254528	genome.wustl.edu	37	16	1910434	1910434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152764.2	-1	validated	p.R101I	1.000	619	0%	327	30.3%	-	-	possibly_damaging(0.666)	deleterious(0.03)	deleterious(0.601)	superfamily_Nucleic_acid_OB
RPL3L	6123	genome.wustl.edu	37	16	1995860	1995860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005061.2	-1	reviewed	p.K341N	1.000	279	0%	169	35.5%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Ribosomal_L3,superfamily_Translat_factor
ZNF598	90850	genome.wustl.edu	37	16	2048813	2048813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431526	-1	known	p.E751K	0.997	108	0%	55	16.4%	-	-	probably_damaging(0.987)	tolerated(0.18)	deleterious(0.492)	NULL
PKD1	5310	genome.wustl.edu	37	16	2139983	2139983	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009944.2	-1	reviewed	p.F4219	0.204	68	0%	38	50%	-	-	-	-	-	NULL
CASKIN1	57524	genome.wustl.edu	37	16	2239038	2239038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020764.3	-1	validated	p.D203N	1.000	172	0%	121	42.1%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
E4F1	1877	genome.wustl.edu	37	16	2278450	2278450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004424.3	+1	reviewed	p.Q79K	1.000	68	0%	47	21.3%	-	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	superfamily_C2H2 and C2HC zinc fingers
ABCA3	21	genome.wustl.edu	37	16	2338039	2338039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001089.2	-1	reviewed	p.R998C	0.008	39	0%	27	44.4%	-	-	probably_damaging(0.953)	tolerated(0.18)	neutral(0.453)	NULL
ABCA3	21	genome.wustl.edu	37	16	2358563	2358563	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001089.2	-1	reviewed	p.F391	0.988	154	0%	105	27.6%	-	-	-	-	-	NULL
ABCA3	21	genome.wustl.edu	37	16	2376201	2376201	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001089.2	-1	reviewed	p.R43	1.000	203	0%	103	30.1%	-	-	-	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2811844	2811844	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.E439*	1.000	152	0%	78	42.3%	-	-	-	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2811977	2811977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.R483K	1.000	125	0%	80	31.2%	-	-	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2812622	2812622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.R698K	0.940	79	0%	54	35.2%	-	-	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2812948	2812948	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.K807*	0.998	187	0%	78	28.2%	-	-	-	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2814737	2814737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.S1403Y	0.354	119	0%	57	43.9%	-	-	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2821355	2821355	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396975	+1	known	p.F311L	1.000	33	0%	26	42.3%	-	-	possibly_damaging(0.737)	-	-	NULL
THOC6	79228	genome.wustl.edu	37	16	3076519	3076519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024339.3	+1	validated	p.E138D	1.000	347	0%	189	44.4%	-	-	benign(0.001)	tolerated(0.95)	-	superfamily_WD40 repeat-like
CCDC64B	146439	genome.wustl.edu	37	16	3079326	3079326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103175.1	-1	validated	p.E354D	0.248	300	0.3%	169	32%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ZNF200	7752	genome.wustl.edu	37	16	3283659	3283659	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003454.3	-1	validated	p.R33*	0.998	239	0%	141	37.6%	-	-	-	-	-	NULL
MEFV	4210	genome.wustl.edu	37	16	3299713	3299713	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000243.2	-1	reviewed	p.T326	0.000	92	0%	82	17.1%	-	-	-	-	-	NULL
NLRC3	197358	genome.wustl.edu	37	16	3600494	3600494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178844.2	-1	validated	p.F785L	0.992	48	0%	33	45.5%	-	-	benign(0)	tolerated(1)	-	HMMSmart_SM00368,superfamily_RNI-like
SLX4	84464	genome.wustl.edu	37	16	3639963	3639963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.R1226W	0.000	96	0%	74	36.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SLX4	84464	genome.wustl.edu	37	16	3652166	3652166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.K301N	1.000	135	0%	103	40.8%	-	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
TRAP1	10131	genome.wustl.edu	37	16	3708826	3708826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016292.2	-1	validated	p.E661K	0.466	66	0%	46	41.3%	-	-	benign(0.003)	tolerated(0.08)	neutral(0.300)	superfamily_SSF110942
TRAP1	10131	genome.wustl.edu	37	16	3726052	3726052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016292.2	-1	validated	p.E267K	1.000	232	0%	153	32.7%	-	-	benign(0.009)	tolerated(0.29)	neutral(0.030)	superfamily_ATP_bd_ATPase,HMMPfam_HSP90
CREBBP	1387	genome.wustl.edu	37	16	3778767	3778767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.P2094L	1.000	68	0%	50	52%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Nuc_recept_coact,HMMPfam_Creb_binding
ADCY9	115	genome.wustl.edu	37	16	4016941	4016941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001116.2	-1	reviewed	p.S966L	0.997	45	0%	30	13.3%	-	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
ADCY9	115	genome.wustl.edu	37	16	4027514	4027514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001116.2	-1	reviewed	p.L933F	0.928	46	0%	33	33.3%	-	-	benign(0.055)	deleterious(0.04)	neutral(0.352)	NULL
ADCY9	115	genome.wustl.edu	37	16	4164165	4164165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001116.2	-1	reviewed	p.D427N	1.000	77	0%	69	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
SRL	6345	genome.wustl.edu	37	16	4242289	4242289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098814.1	-1	validated	p.E429D	1.000	154	0%	88	26.1%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
TFAP4	7023	genome.wustl.edu	37	16	4312647	4312647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003223.2	-1	validated	p.R49W	1.000	113	0%	75	34.7%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_HLH,superfamily_HLH_basic
NMRAL1	57407	genome.wustl.edu	37	16	4511876	4511876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020677.3	-1	provisional	p.D269N	0.992	196	0%	151	37.1%	-	-	benign(0.061)	tolerated(0.47)	neutral(0.015)	superfamily_NAD(P)-bd
NMRAL1	57407	genome.wustl.edu	37	16	4519410	4519410	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020677.3	-1	provisional	p.R33*	0.993	191	0%	131	32.1%	-	-	-	-	-	HMMPfam_NmrA,superfamily_NAD(P)-bd
LOC342346	342346	genome.wustl.edu	37	16	4606569	4606569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145011.1	+1	predicted	p.H27Y	0.908	72	0%	58	39.7%	-	-	unknown(0)	deleterious(0)	-	NULL
MGRN1	23295	genome.wustl.edu	37	16	4732878	4732878	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015246.2	+1	validated	p.S471	0.393	111	0%	44	27.3%	-	-	-	-	-	NULL
ANKS3	124401	genome.wustl.edu	37	16	4751009	4751009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133450.2	-1	provisional	p.S416G	0.000	146	0%	63	36.5%	-	-	benign(0.014)	tolerated(0.54)	neutral(0.008)	NULL
UBN1	29855	genome.wustl.edu	37	16	4908594	4908594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079514.1	+1	validated	p.R121Q	1.000	294	0%	154	23.4%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
UBN1	29855	genome.wustl.edu	37	16	4911055	4911055	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079514.1	+1	validated	p.P354	0.162	144	0%	78	32.1%	-	-	-	-	-	NULL
UBN1	29855	genome.wustl.edu	37	16	4926967	4926967	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079514.1	+1	validated	p.S1040	0.000	233	0%	145	31%	-	-	-	-	-	NULL
PPL	5493	genome.wustl.edu	37	16	4944609	4944609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.S418L	0.079	119	0%	74	36.5%	-	-	benign(0.021)	tolerated(0.56)	neutral(0.007)	HMMSmart_SM00150,superfamily_Spectrin repeat
SEC14L5	9717	genome.wustl.edu	37	16	5057401	5057401	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014692.1	+1	validated	p.E496*	0.620	89	0%	57	26.3%	-	-	-	-	-	HMMPfam_CRAL_TRIO,superfamily_CRAL_TRIO_C
C16orf89	146556	genome.wustl.edu	37	16	5105317	5105317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152459.3	-1	validated	p.F304L	1.000	53	0%	45	26.7%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
FAM86A	196483	genome.wustl.edu	37	16	5140246	5140246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201400.2	-1	validated	p.L194P	0.996	101	0%	84	31%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
RBFOX1	54715	genome.wustl.edu	37	16	7383011	7383011	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145891.2	+1	reviewed	p.A3	1.000	327	0%	162	37.7%	-	-	-	-	-	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7629849	7629849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145891.2	+1	reviewed	p.S134Y	1.000	336	0%	146	34.9%	-	-	benign(0.196)	tolerated(0.09)	neutral(0.315)	superfamily_SSF54928
ABAT	18	genome.wustl.edu	37	16	8873372	8873372	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000663.4	+1	reviewed	p.R436*	0.954	236	0%	146	37.7%	-	-	-	-	-	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
PMM2	5373	genome.wustl.edu	37	16	8906942	8906942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000303.2	+1	reviewed	p.F206L	1.000	242	0%	176	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMM,superfamily_HAD-like
LOC100132944	100132944	genome.wustl.edu	37	16	8941568	8941568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716801.2	-1	model	p.E205K	0.001	57	0%	38	34.2%	-	-	-	-	-	NULL
USP7	7874	genome.wustl.edu	37	16	8993562	8993562	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003470.2	-1	validated	p.R788*	0.918	386	0%	205	22%	-	-	-	-	-	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857867	9857867	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.L1178	0.003	300	0%	194	37.1%	-	-	-	-	-	HMMPfam_NMDAR2_C
ATF7IP2	80063	genome.wustl.edu	37	16	10575768	10575768	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024997.2	+1	validated	p.R571*	0.002	487	0.2%	183	43.2%	-	-	-	-	-	NULL
CIITA	4261	genome.wustl.edu	37	16	10997631	10997631	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000246.3	+1	reviewed	p.F272	0.000	193	0.5%	122	39.3%	-	-	-	-	-	NULL
TNP2	7142	genome.wustl.edu	37	16	11362996	11362996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005425.4	-1	validated	p.R42C	0.000	508	0%	331	37.8%	-	-	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	HMMPfam_TP2
PRM2	5620	genome.wustl.edu	37	16	11369713	11369713	+	Missense_Mutation	SNP	G	G	A	rs140797025	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435245	-1	known	p.R133C	0.011	414	0%	226	29.6%	-	-	possibly_damaging(0.641)	-	-	NULL
SNX29	92017	genome.wustl.edu	37	16	12136879	12136879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032167.2	+1	validated	p.E125K	1.000	39	0%	45	42.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RUN,HMMSmart_SM00593
ERCC4	2072	genome.wustl.edu	37	16	14041854	14041854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005236.2	+1	reviewed	p.L801I	1.000	308	0%	208	38.9%	-	-	possibly_damaging(0.896)	tolerated(1)	neutral(0.353)	superfamily_Restrict_endonuc_II-like_core
MKL2	57496	genome.wustl.edu	37	16	14352005	14352005	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014048.3	+1	validated	p.L867	1.000	239	0%	149	31.5%	-	-	-	-	-	NULL
PARN	5073	genome.wustl.edu	37	16	14530620	14530620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002582.2	-1	reviewed	p.S625L	0.002	199	0%	131	37.4%	-	-	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
PARN	5073	genome.wustl.edu	37	16	14698008	14698008	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002582.2	-1	reviewed	p.E260*	1.000	830	0%	453	35.3%	-	-	-	-	-	HMMPfam_CAF1,superfamily_Ribonuclease H-like
NOMO1	23420	genome.wustl.edu	37	16	14951404	14951404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014287.3	+1	reviewed	p.T371I	0.999	918	0.1%	537	27%	-	-	possibly_damaging(0.837)	deleterious(0.03)	deleterious(0.684)	superfamily_Starch-binding domain-like
NOMO1	23420	genome.wustl.edu	37	16	14978246	14978246	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014287.3	+1	reviewed	p.I1043	0.988	401	0%	277	35%	-	-	-	-	-	superfamily_Carboxypeptidase regulatory domain
PDXDC1	23042	genome.wustl.edu	37	16	15126764	15126764	+	Missense_Mutation	SNP	G	G	A	rs141392697	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015027.2	+1	validated	p.E540K	1.000	155	0%	88	34.1%	-	-	possibly_damaging(0.943)	tolerated(0.14)	deleterious(0.637)	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15706615	15706615	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.S1091	0.998	158	0%	107	38.3%	-	-	unknown(0)	deleterious(0.02)	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15727570	15727570	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.E379	1.000	177	0%	102	32.4%	-	-	-	-	-	HMMPfam_DUF537
MYH11	4629	genome.wustl.edu	37	16	15814827	15814827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.E1561K	1.000	206	0%	169	43.2%	-	-	possibly_damaging(0.68)	tolerated(0.08)	deleterious(0.542)	HMMPfam_Myosin_tail_1
MYH11	4629	genome.wustl.edu	37	16	15851701	15851701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.E527K	1.000	333	0%	202	40.1%	-	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH11	4629	genome.wustl.edu	37	16	15851845	15851845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.E479K	1.000	416	0%	277	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
ABCC1	4363	genome.wustl.edu	37	16	16232306	16232306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004996.3	+1	reviewed	p.V1460M	1.000	89	0%	88	36.4%	-	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMG1	23049	genome.wustl.edu	37	16	18839429	18839429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.R3222Q	1.000	344	0%	160	21.2%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SMG1	23049	genome.wustl.edu	37	16	18851086	18851086	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.P2293	0.795	137	0%	77	31.2%	-	-	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
TMC7	79905	genome.wustl.edu	37	16	19070756	19070756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024847.3	+1	validated	p.F682L	1.000	284	0%	126	35.7%	-	-	benign(0.017)	tolerated(0.23)	neutral(0.042)	NULL
CCP110	9738	genome.wustl.edu	37	16	19543802	19543802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014711.4	+1	validated	p.R69I	0.743	388	0%	141	35.5%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
CCP110	9738	genome.wustl.edu	37	16	19548258	19548258	+	Missense_Mutation	SNP	G	G	A	rs148705711	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014711.4	+1	validated	p.E423K	0.181	308	0%	163	33.7%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
CCP110	9738	genome.wustl.edu	37	16	19553298	19553298	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014711.4	+1	validated	p.L713	0.041	346	0%	134	38.8%	-	-	-	-	-	NULL
C16orf62	57020	genome.wustl.edu	37	16	19584549	19584549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020314.4	+1	predicted	p.E132K	1.000	157	0%	70	28.6%	-	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
GPRC5B	51704	genome.wustl.edu	37	16	19883766	19883766	+	Silent	SNP	C	C	T	rs182863834	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016235.1	-1	reviewed	p.A134	0.456	38	0%	18	38.9%	-	-	-	-	-	HMMPfam_7tm_3
ACSM2A	123876	genome.wustl.edu	37	16	20486988	20486988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010845.2	+1	validated	p.L331I	0.931	253	0%	152	35.5%	-	-	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM2B	348158	genome.wustl.edu	37	16	20566602	20566602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105069.1	-1	validated	p.K195N	0.019	427	0.2%	205	40%	-	-	benign(0.01)	tolerated(0.36)	neutral(0.021)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
THUMPD1	55623	genome.wustl.edu	37	16	20749051	20749051	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017736.3	-1	validated	p.E212*	1.000	381	0%	179	33%	-	-	-	-	-	HMMPfam_THUMP
THUMPD1	55623	genome.wustl.edu	37	16	20750321	20750321	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017736.3	-1	validated	p.E102*	1.000	367	0%	223	33.6%	-	-	-	-	-	NULL
ACSM3	6296	genome.wustl.edu	37	16	20796331	20796331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005622.3	+1	validated	p.C349G	1.000	320	0%	136	44.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DNAH3	55567	genome.wustl.edu	37	16	20944760	20944760	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.E4023*	1.000	380	0%	198	32.3%	-	-	-	-	-	HMMPfam_Dynein_heavy
DNAH3	55567	genome.wustl.edu	37	16	20986563	20986563	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.G2751*	0.685	435	0%	297	40.4%	-	-	-	-	-	NULL
DNAH3	55567	genome.wustl.edu	37	16	20990817	20990817	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.L2637	0.000	409	0%	286	28.3%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	20999312	20999312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.S2226L	0.356	425	0%	216	31.5%	-	-	possibly_damaging(0.623)	tolerated(0.12)	deleterious(0.478)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21110026	21110026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.E811K	1.000	347	0%	211	37.4%	-	-	possibly_damaging(0.92)	tolerated(0.29)	neutral(0.400)	NULL
ZP2	7783	genome.wustl.edu	37	16	21210115	21210115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003460.1	-1	reviewed	p.D666Y	0.000	259	0%	142	38%	-	-	possibly_damaging(0.56)	deleterious(0.02)	deleterious(0.574)	NULL
ZP2	7783	genome.wustl.edu	37	16	21221032	21221032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003460.1	-1	reviewed	p.D84N	0.044	354	0%	203	28.1%	-	-	benign(0.085)	deleterious(0.05)	neutral(0.351)	NULL
ANKS4B	257629	genome.wustl.edu	37	16	21261887	21261887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145865.2	+1	validated	p.D334N	0.959	655	0%	325	31.7%	-	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
OTOA	146183	genome.wustl.edu	37	16	21747669	21747669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144672.3	+1	reviewed	p.R797W	0.547	473	0%	294	21.4%	-	-	benign(0.003)	tolerated(0.22)	neutral(0.042)	NULL
PDZD9	255762	genome.wustl.edu	37	16	22000036	22000036	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173806.3	-1	validated	p.H34	0.030	204	0%	110	38.2%	-	-	-	-	-	NULL
EEF2K	29904	genome.wustl.edu	37	16	22277813	22277813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013302.3	+1	reviewed	p.E515K	0.993	204	0%	97	42.3%	-	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
USP31	57478	genome.wustl.edu	37	16	23080366	23080366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020718.3	-1	validated	p.E1020D	1.000	478	0%	238	29.8%	-	-	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
SCNN1G	6340	genome.wustl.edu	37	16	23197820	23197820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039.3	+1	reviewed	p.F76L	0.560	89	0%	50	32%	-	-	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_ASC
SCNN1B	6338	genome.wustl.edu	37	16	23364359	23364359	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000336.2	+1	reviewed	p.I183	0.045	244	0%	112	37.5%	-	-	-	-	-	HMMPfam_ASC
ERN2	10595	genome.wustl.edu	37	16	23702468	23702468	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033266.3	-1	validated	p.L898	0.703	217	0%	152	40.1%	-	-	-	-	-	HMMSmart_SM00580,HMMPfam_Ribonuc_2-5A
CACNG3	10368	genome.wustl.edu	37	16	24366209	24366209	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006539.2	+1	reviewed	p.F117	0.903	109	0%	105	18.1%	-	-	-	-	-	HMMPfam_PMP22_Claudin
RBBP6	5930	genome.wustl.edu	37	16	24567184	24567184	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.T160	0.173	243	0%	127	31.5%	-	-	-	-	-	HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains
RBBP6	5930	genome.wustl.edu	37	16	24573206	24573206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.P338H	0.975	652	0%	245	22.4%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24582256	24582256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.R1290Q	1.000	131	0%	29	37.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24583347	24583347	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.E1654*	1.000	157	0%	82	28%	-	-	-	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24583372	24583372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.S1662Y	0.560	133	0%	70	38.6%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24583592	24583592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.K1735N	1.000	192	0%	67	32.8%	-	-	unknown(0)	deleterious(0)	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24788401	24788401	+	Missense_Mutation	SNP	C	C	T	rs112426081		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014494.2	+1	reviewed	p.P104L	0.404	83	0%	69	29%	-	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24829988	24829988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014494.2	+1	reviewed	p.V1683I	1.000	363	0%	172	33.7%	-	-	benign(0.053)	tolerated(0.39)	neutral(0.019)	NULL
SLC5A11	115584	genome.wustl.edu	37	16	24909402	24909402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000449109	+1	known	p.W194R	0.967	168	0%	88	33%	-	-	possibly_damaging(0.729)	deleterious(0.02)	deleterious(0.649)	HMMPfam_SSF
ARHGAP17	55114	genome.wustl.edu	37	16	24953418	24953418	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006634.1	-1	validated	p.P460	0.016	264	0%	136	47.8%	-	-	-	-	-	NULL
ARHGAP17	55114	genome.wustl.edu	37	16	24966023	24966023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441763	-1	known	p.G217E	0.976	151	0%	101	31.7%	-	-	benign(0.006)	-	-	HMMSmart_SM00721
JMJD5	79831	genome.wustl.edu	37	16	27226229	27226229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145348.1	+1	reviewed	p.R271Q	1.000	210	0%	139	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF51197
IL4R	3566	genome.wustl.edu	37	16	27367145	27367145	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000418.2	+1	reviewed	p.F229	0.435	156	0.6%	99	37.4%	-	-	-	-	-	NULL
IL21R	50615	genome.wustl.edu	37	16	27449003	27449003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021798.2	+1	reviewed	p.E116G	0.000	123	0%	83	37.3%	-	-	benign(0.009)	deleterious(0.05)	neutral(0.346)	superfamily_Fibronectin type III
IL21R	50615	genome.wustl.edu	37	16	27454283	27454283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021798.2	+1	reviewed	p.I118T	1.000	331	0.3%	249	36.1%	-	-	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	superfamily_Fibronectin type III
GTF3C1	2975	genome.wustl.edu	37	16	27475805	27475805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001520.3	-1	validated	p.D1903A	0.000	88	0%	61	27.9%	-	-	benign(0.063)	tolerated(0.23)	neutral(0.045)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27523103	27523103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001520.3	-1	validated	p.E365K	0.997	236	0%	147	29.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_B-block_TFIIIC
KIAA0556	23247	genome.wustl.edu	37	16	27640074	27640074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.S78L	0.732	179	0%	104	39.4%	-	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
XPO6	23214	genome.wustl.edu	37	16	28188560	28188560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015171.2	-1	provisional	p.Y63C	1.000	261	0%	121	38%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IBN_N,superfamily_ARM repeat
SH2B1	25970	genome.wustl.edu	37	16	28883182	28883182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015503.2	+1	reviewed	p.S464L	1.000	154	0%	107	41.1%	-	-	possibly_damaging(0.616)	tolerated(0.07)	deleterious(0.533)	NULL
ATP2A1	487	genome.wustl.edu	37	16	28913303	28913303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173201.2	+1	reviewed	p.F740L	1.000	190	0%	173	28.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
RRN3P2	653390	genome.wustl.edu	37	16	29096564	29096564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415221	+1	known	p.V167I	0.999	594	0%	296	23.3%	-	-	benign(0.08)	tolerated(0.17)	neutral(0.065)	HMMPfam_RRN3
RRN3P2	653390	genome.wustl.edu	37	16	29110492	29110492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427965	+1	known	p.I386T	1.000	179	0%	74	35.1%	-	-	benign(0.077)	deleterious(0.02)	neutral(0.389)	HMMPfam_RRN3
KIF22	3835	genome.wustl.edu	37	16	29810350	29810350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007317.1	+1	reviewed	p.R202W	0.988	48	0%	32	40.6%	-	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
C16orf53	79447	genome.wustl.edu	37	16	29828312	29828312	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024516.3	+1	validated	p.E156*	1.000	94	0%	47	23.4%	-	-	-	-	-	NULL
MVP	9961	genome.wustl.edu	37	16	29855944	29855944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005115.3	+1	reviewed	p.D589N	1.000	109	0%	79	36.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAOK2	9344	genome.wustl.edu	37	16	29990823	29990823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016151.2	+1	validated	p.E217K	1.000	446	0%	235	40.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PPP4C	5531	genome.wustl.edu	37	16	30094139	30094139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002720.1	+1	provisional	p.E92K	1.000	132	0%	108	31.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
PPP4C	5531	genome.wustl.edu	37	16	30096303	30096303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002720.1	+1	provisional	p.D282Y	1.000	77	0%	48	29.2%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
GDPD3	79153	genome.wustl.edu	37	16	30122741	30122741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024307.2	-1	validated	p.F225L	0.970	297	0%	154	37.7%	-	-	benign(0.02)	tolerated(0.15)	neutral(0.242)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
GDPD3	79153	genome.wustl.edu	37	16	30123644	30123644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024307.2	-1	validated	p.E156K	0.005	177	0%	121	43%	-	-	benign(0.018)	tolerated(0.12)	neutral(0.261)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
CD2BP2	10421	genome.wustl.edu	37	16	30365230	30365230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006110.2	-1	reviewed	p.I123V	1.000	66	0%	58	39.7%	-	-	benign(0.159)	tolerated(0.13)	neutral(0.267)	NULL
ITGAL	3683	genome.wustl.edu	37	16	30492807	30492807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002209.2	+1	reviewed	p.F208L	0.983	353	0%	185	10.3%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
ZNF768	79724	genome.wustl.edu	37	16	30536963	30536963	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024671.3	-1	validated	p.Q166	0.428	156	0%	66	28.8%	-	-	-	-	-	NULL
ZNF688	146542	genome.wustl.edu	37	16	30581396	30581396	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145271.3	-1	validated	p.F224	1.000	16	0%	22	31.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF689	115509	genome.wustl.edu	37	16	30616672	30616672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138447.1	-1	provisional	p.R139Q	0.588	59	0%	34	44.1%	-	-	possibly_damaging(0.858)	tolerated(0.42)	neutral(0.345)	NULL
SRCAP	10847	genome.wustl.edu	37	16	30718978	30718978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.R193Q	0.994	303	0%	152	34.9%	-	-	unknown(0)	-	-	HMMPfam_HSA,HMMSmart_SM00573
SRCAP	10847	genome.wustl.edu	37	16	30724038	30724038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.V678M	1.000	339	0%	172	39.5%	-	-	unknown(0)	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
BCL7C	9274	genome.wustl.edu	37	16	30900234	30900234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004765.2	-1	reviewed	p.E159K	1.000	146	0%	123	34.1%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
FUS	2521	genome.wustl.edu	37	16	31201374	31201374	+	Silent	SNP	C	C	A	rs190724342	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004960.3	+1	reviewed	p.S360	0.993	586	0.2%	274	41.2%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
FUS	2521	genome.wustl.edu	37	16	31202383	31202383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004960.3	+1	reviewed	p.R498Q	1.000	125	0%	44	22.7%	-	-	probably_damaging(0.963)	tolerated(0.25)	neutral(0.443)	NULL
ITGAD	3681	genome.wustl.edu	37	16	31422182	31422182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005353.2	+1	validated	p.E447K	0.141	98	0%	39	25.6%	-	-	benign(0.006)	tolerated(0.78)	neutral(0.001)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ZNF843	283933	genome.wustl.edu	37	16	31448122	31448122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136509.1	-1	provisional	p.A17S	0.000	65	0%	53	30.2%	-	-	unknown(0)	-	-	superfamily_SSF57667
ZNF267	10308	genome.wustl.edu	37	16	31927264	31927264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003414.4	+1	validated	p.R565L	0.001	189	0%	106	42.5%	-	-	possibly_damaging(0.523)	tolerated(0.16)	neutral(0.236)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SHCBP1	79801	genome.wustl.edu	37	16	46638366	46638366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024745.4	-1	validated	p.D233Y	1.000	78	0%	39	41%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SHCBP1	79801	genome.wustl.edu	37	16	46642218	46642218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024745.4	-1	validated	p.R227Q	1.000	491	0%	253	32%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAB43P1	440375	genome.wustl.edu	37	16	46660795	46660795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000332781	-1	known	p.D23N	1.000	108	0%	85	11.8%	-	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
MYLK3	91807	genome.wustl.edu	37	16	46744629	46744629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182493.2	-1	validated	p.W729C	1.000	166	0%	68	29.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NETO2	81831	genome.wustl.edu	37	16	47163219	47163219	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018092.3	-1	reviewed	p.R50*	1.000	270	0%	140	40.7%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PHKB	5257	genome.wustl.edu	37	16	47684808	47684808	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000293.2	+1	reviewed	p.V649	1.000	420	0%	146	29.5%	-	-	-	-	-	HMMPfam_PHK_AB
PHKB	5257	genome.wustl.edu	37	16	47727313	47727313	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000293.2	+1	reviewed	p.I930	0.468	206	0%	111	24.3%	-	-	-	-	-	HMMPfam_PHK_AB
ABCC12	94160	genome.wustl.edu	37	16	48122467	48122467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033226.2	-1	reviewed	p.R1155I	1.000	282	0%	132	43.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC12	94160	genome.wustl.edu	37	16	48145815	48145815	+	Missense_Mutation	SNP	C	C	T	rs186956235	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033226.2	-1	reviewed	p.E666K	1.000	297	0%	189	17.5%	-	-	probably_damaging(0.991)	tolerated(0.59)	neutral(0.449)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC11	85320	genome.wustl.edu	37	16	48239409	48239409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.L574M	0.922	124	0%	78	20.5%	-	-	possibly_damaging(0.76)	tolerated(0.14)	deleterious(0.530)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC11	85320	genome.wustl.edu	37	16	48247384	48247384	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.T442	0.000	207	0%	101	38.6%	-	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC11	85320	genome.wustl.edu	37	16	48249133	48249133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.E358D	1.000	334	0%	223	13%	-	-	probably_damaging(0.96)	tolerated(0.35)	neutral(0.424)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC11	85320	genome.wustl.edu	37	16	48256554	48256554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.E244D	0.992	237	0%	111	34.2%	-	-	benign(0.322)	tolerated(0.11)	neutral(0.373)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LONP2	83752	genome.wustl.edu	37	16	48381552	48381552	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031490.2	+1	provisional	p.D691	0.073	169	0%	124	34.7%	-	-	-	-	-	HMMPfam_Lon_C,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF52540
N4BP1	9683	genome.wustl.edu	37	16	48585329	48585329	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153029.3	-1	validated	p.V695	0.996	232	0%	103	35%	-	-	-	-	-	NULL
HEATR3	55027	genome.wustl.edu	37	16	50104153	50104153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182922.2	+1	provisional	p.S155Y	0.243	323	0%	151	37.1%	-	-	benign(0)	tolerated(1)	-	superfamily_ARM repeat
NOD2	64127	genome.wustl.edu	37	16	50744557	50744557	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022162.1	+1	reviewed	p.T245	0.960	123	0%	89	33.7%	-	-	-	-	-	NULL
CYLD	1540	genome.wustl.edu	37	16	50785567	50785567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015247.2	+1	reviewed	p.L186R	0.997	332	0%	187	34.2%	-	-	benign(0.422)	tolerated(0.06)	neutral(0.460)	HMMPfam_CAP_GLY,superfamily_Cap-Gly domain
CYLD	1540	genome.wustl.edu	37	16	50818257	50818257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015247.2	+1	reviewed	p.S615Y	1.000	335	0%	182	11%	-	-	benign(0.189)	deleterious(0)	neutral(0.462)	HMMPfam_UCH,superfamily_Cysteine proteinases
SALL1	6299	genome.wustl.edu	37	16	51172672	51172672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002968.2	-1	reviewed	p.R1154I	1.000	303	0%	193	39.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SALL1	6299	genome.wustl.edu	37	16	51174469	51174469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002968.2	-1	reviewed	p.V555A	1.000	90	0%	75	41.3%	-	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	NULL
TOX3	27324	genome.wustl.edu	37	16	52473275	52473275	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080430.2	-1	reviewed	p.R531	1.000	156	0%	80	36.2%	-	-	-	-	-	NULL
TOX3	27324	genome.wustl.edu	37	16	52484379	52484379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080430.2	-1	reviewed	p.A163V	0.999	241	0%	143	11.9%	-	-	possibly_damaging(0.672)	tolerated(0.31)	neutral(0.265)	NULL
CHD9	80205	genome.wustl.edu	37	16	53191270	53191270	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025134.4	+1	validated	p.F423	1.000	207	0.5%	134	29.1%	-	-	-	-	-	NULL
CHD9	80205	genome.wustl.edu	37	16	53243565	53243565	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025134.4	+1	validated	p.E542*	1.000	311	0%	99	35.4%	-	-	-	-	-	NULL
CHD9	80205	genome.wustl.edu	37	16	53289552	53289552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025134.4	+1	validated	p.R1357Q	1.000	305	0%	129	20.2%	-	-	possibly_damaging(0.854)	deleterious(0.01)	deleterious(0.735)	superfamily_SSF52540
CHD9	80205	genome.wustl.edu	37	16	53341841	53341841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000219084	+1	known	p.K2343N	1.000	64	0%	41	39%	-	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
CHD9	80205	genome.wustl.edu	37	16	53357965	53357965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025134.4	+1	validated	p.L2602F	1.000	82	0%	33	45.5%	-	-	unknown(0)	deleterious(0)	-	NULL
RBL2	5934	genome.wustl.edu	37	16	53476577	53476577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005611.3	+1	validated	p.E127K	1.000	157	0%	72	30.6%	-	-	benign(0.406)	deleterious(0.03)	deleterious(0.495)	HMMSmart_CYCLIN
RBL2	5934	genome.wustl.edu	37	16	53495699	53495699	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005611.3	+1	validated	p.E465*	1.000	439	0%	229	41.5%	-	-	-	-	-	HMMPfam_RB_A,superfamily_Cyclin_like
RBL2	5934	genome.wustl.edu	37	16	53496517	53496517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005611.3	+1	validated	p.E504*	1.000	199	0%	86	32.6%	-	-	-	-	-	HMMPfam_RB_A,superfamily_Cyclin_like
RBL2	5934	genome.wustl.edu	37	16	53515709	53515709	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005611.3	+1	validated	p.E1071*	1.000	269	0%	152	34.2%	-	-	-	-	-	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53720384	53720384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015272.2	-1	reviewed	p.S246Y	1.000	383	0.3%	204	36.8%	-	-	possibly_damaging(0.845)	deleterious(0.01)	deleterious(0.730)	NULL
FTO	79068	genome.wustl.edu	37	16	54145754	54145754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080432.2	+1	reviewed	p.S482L	0.000	221	0%	122	27%	-	-	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	NULL
IRX5	10265	genome.wustl.edu	37	16	54966716	54966716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005853.5	+1	validated	p.E186K	1.000	207	0%	119	34.5%	-	-	probably_damaging(0.993)	tolerated(0.09)	deleterious(0.746)	NULL
LPCAT2	54947	genome.wustl.edu	37	16	55616948	55616948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017839.4	+1	reviewed	p.A525T	0.000	360	0%	110	10%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
SLC6A2	6530	genome.wustl.edu	37	16	55703601	55703601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001043.3	+1	reviewed	p.F133L	0.993	71	0%	54	33.3%	-	-	benign(0)	tolerated(1)	-	HMMPfam_SNF
SLC6A2	6530	genome.wustl.edu	37	16	55725862	55725862	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001043.3	+1	reviewed	p.F272	0.907	108	0%	82	22%	-	-	-	-	-	HMMPfam_SNF
CES1	1066	genome.wustl.edu	37	16	55846911	55846911	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025195.1	-1	reviewed	p.L330	0.001	491	0%	265	15.8%	-	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
CES1	1066	genome.wustl.edu	37	16	55855282	55855282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025195.1	-1	reviewed	p.L231I	0.995	237	0%	132	17.4%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_COesterase,superfamily_SSF53474
CES1	1066	genome.wustl.edu	37	16	55855329	55855329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025195.1	-1	reviewed	p.S215F	0.980	236	0%	110	21.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_1,superfamily_SSF53474
GNAO1	2775	genome.wustl.edu	37	16	56370655	56370655	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020988.2	+1	validated	p.V202	0.878	61	0%	54	20.4%	-	-	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
AMFR	267	genome.wustl.edu	37	16	56442017	56442017	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144.4	-1	reviewed	p.S175	0.786	145	0%	108	28.7%	-	-	-	-	-	NULL
OGFOD1	55239	genome.wustl.edu	37	16	56508805	56508805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018233.3	+1	validated	p.H451N	1.000	285	0%	122	27%	-	-	benign(0.275)	tolerated(0.3)	neutral(0.058)	HMMPfam_Ofd1_CTDD
NUP93	9688	genome.wustl.edu	37	16	56863003	56863003	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014669.3	+1	validated	p.A303	0.490	226	0%	99	43.4%	-	-	-	-	-	HMMPfam_Nic96
NLRC5	84166	genome.wustl.edu	37	16	57059639	57059639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.R262C	1.000	138	0%	106	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRC5	84166	genome.wustl.edu	37	16	57059678	57059678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.E275K	0.977	142	0%	116	44.8%	-	-	benign(0.277)	tolerated(0.16)	neutral(0.089)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRC5	84166	genome.wustl.edu	37	16	57059999	57059999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.A382T	0.001	69	0%	57	31.6%	-	-	possibly_damaging(0.731)	deleterious(0.01)	deleterious(0.673)	HMMPfam_NACHT
CPNE2	221184	genome.wustl.edu	37	16	57147250	57147250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152727.4	+1	reviewed	p.K77N	1.000	238	0%	112	43.8%	-	-	benign(0.06)	deleterious(0.01)	neutral(0.410)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
GPR97	222487	genome.wustl.edu	37	16	57713114	57713114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170776.4	+1	validated	p.G173D	0.047	144	0%	118	16.1%	-	-	benign(0.428)	tolerated(0.45)	neutral(0.151)	NULL
CCDC135	84229	genome.wustl.edu	37	16	57734141	57734141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032269.5	+1	validated	p.D155N	0.998	98	0%	69	11.6%	-	-	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
KIFC3	3801	genome.wustl.edu	37	16	57800882	57800882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005550.3	-1	validated	p.E412K	1.000	68	0%	56	25%	-	-	benign(0.003)	tolerated(0.94)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CNGB1	1258	genome.wustl.edu	37	16	58001095	58001095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001297.4	-1	reviewed	p.E32D	0.047	368	0%	256	39.1%	-	-	benign(0.181)	tolerated(0.1)	neutral(0.303)	NULL
TEPP	374739	genome.wustl.edu	37	16	58011754	58011754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199046.2	+1	validated	p.D67N	0.302	71	0%	61	31.1%	-	-	possibly_damaging(0.886)	deleterious(0.04)	deleterious(0.696)	NULL
ZNF319	57567	genome.wustl.edu	37	16	58031271	58031271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020807.1	-1	provisional	p.S300L	0.967	41	0%	35	45.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF57667
ZNF319	57567	genome.wustl.edu	37	16	58031380	58031380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020807.1	-1	provisional	p.E264K	1.000	101	0%	69	39.1%	-	-	possibly_damaging(0.918)	tolerated(0.06)	deleterious(0.691)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C16orf80	29105	genome.wustl.edu	37	16	58149300	58149300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013242.2	-1	validated	p.R113Q	0.992	484	0.2%	274	46%	-	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMPfam_DUF667
CCDC113	29070	genome.wustl.edu	37	16	58292313	58292313	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014157.3	+1	validated	p.S144	0.096	263	0%	148	34.5%	-	-	-	-	-	NULL
CNOT1	23019	genome.wustl.edu	37	16	58559241	58559241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.R2209H	1.000	364	0%	218	30.7%	-	-	benign(0.309)	tolerated(0.06)	neutral(0.419)	HMMPfam_Not1
CNOT1	23019	genome.wustl.edu	37	16	58559906	58559906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.R2197H	1.000	308	0%	138	39.1%	-	-	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	HMMPfam_Not1
CNOT1	23019	genome.wustl.edu	37	16	58577605	58577605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.N1447S	1.000	204	0%	104	38.5%	-	-	benign(0.103)	tolerated(0.4)	neutral(0.024)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58622714	58622714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.D67Y	1.000	246	0%	136	36%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
CDH11	1009	genome.wustl.edu	37	16	65005552	65005552	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.G524	1.000	393	0%	195	27.2%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DYNC1LI2	1783	genome.wustl.edu	37	16	66776563	66776563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006141.2	-1	validated	p.R103C	1.000	124	0%	83	33.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC79	283847	genome.wustl.edu	37	16	66804079	66804079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136505.1	-1	provisional	p.S469Y	0.013	435	0%	284	37.7%	-	-	benign(0.028)	deleterious(0.01)	neutral(0.407)	NULL
NAE1	8883	genome.wustl.edu	37	16	66842942	66842942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003905.3	-1	reviewed	p.R396Q	1.000	336	0%	151	9.9%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Activating enzymes of the ubiquitin-like proteins
PDP2	57546	genome.wustl.edu	37	16	66918510	66918510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020786.1	+1	validated	p.R108Q	0.833	72	0%	50	18%	-	-	possibly_damaging(0.814)	tolerated(0.38)	neutral(0.325)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
CES4A	283848	genome.wustl.edu	37	16	67039259	67039259	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173815.4	+1	validated	p.F399	0.004	118	0%	90	36.7%	-	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
ELMO3	79767	genome.wustl.edu	37	16	67233122	67233122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024712.3	+1	reviewed	p.L18I	0.000	25	0%	21	19%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
ELMO3	79767	genome.wustl.edu	37	16	67235682	67235682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024712.3	+1	reviewed	p.A372G	1.000	71	0%	44	31.8%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_ELMO_CED12
SLC9A5	6553	genome.wustl.edu	37	16	67290827	67290827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004594.2	+1	validated	p.Q382H	1.000	190	0%	151	43%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Na_H_Exchanger
KCTD19	146212	genome.wustl.edu	37	16	67328578	67328578	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100915.1	-1	provisional	p.E499*	1.000	158	0%	122	39.3%	-	-	-	-	-	NULL
KCTD19	146212	genome.wustl.edu	37	16	67331472	67331472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100915.1	-1	provisional	p.E361K	1.000	329	0%	255	36.9%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
LRRC36	55282	genome.wustl.edu	37	16	67401082	67401082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018296.5	+1	validated	p.S306*	0.762	265	0%	167	12%	-	-	-	-	-	NULL
LRRC36	55282	genome.wustl.edu	37	16	67405063	67405063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018296.5	+1	validated	p.S471L	0.721	210	0.5%	135	38.5%	-	-	possibly_damaging(0.489)	deleterious(0)	deleterious(0.607)	NULL
ZDHHC1	29800	genome.wustl.edu	37	16	67433334	67433334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013304.2	-1	validated	p.A152T	0.810	30	0%	20	30%	-	-	benign(0.02)	tolerated(0.1)	neutral(0.287)	HMMPfam_zf-DHHC
ZDHHC1	29800	genome.wustl.edu	37	16	67435026	67435026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013304.2	-1	validated	p.A88T	0.043	82	1.2%	66	12.1%	-	-	benign(0.271)	tolerated(0.08)	neutral(0.329)	NULL
FAM65A	79567	genome.wustl.edu	37	16	67575779	67575779	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024519.2	+1	validated	p.R364*	0.165	153	0%	124	12.9%	-	-	-	-	-	NULL
FAM65A	79567	genome.wustl.edu	37	16	67579328	67579328	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428437	+1	known	p.A1021T	0.648	83	0%	52	53.8%	-	-	-	-	-	NULL
RLTPR	146206	genome.wustl.edu	37	16	67686231	67686231	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013838.1	+1	provisional	p.E936*	0.491	159	0%	120	15%	-	-	-	-	-	NULL
RLTPR	146206	genome.wustl.edu	37	16	67688786	67688786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013838.1	+1	provisional	p.E1230K	0.972	92	0%	50	26%	-	-	possibly_damaging(0.806)	deleterious(0.03)	deleterious(0.668)	NULL
GFOD2	81577	genome.wustl.edu	37	16	67709493	67709493	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030819.3	-1	validated	p.F241	1.000	58	0%	41	26.8%	-	-	-	-	-	HMMPfam_GFO_IDH_MocA_C,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain
TSNAXIP1	55815	genome.wustl.edu	37	16	67857536	67857536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018430.2	+1	validated	p.R78I	1.000	276	0%	197	36%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
TSNAXIP1	55815	genome.wustl.edu	37	16	67858680	67858680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018430.2	+1	validated	p.E172K	0.933	192	0%	102	34.3%	-	-	benign(0.009)	tolerated(0.24)	neutral(0.038)	NULL
PSMB10	5699	genome.wustl.edu	37	16	67970203	67970203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002801.2	-1	reviewed	p.L53M	1.000	62	0%	45	44.4%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_Proteasome,PatternScan_PROTEASOME_B,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
DUS2L	54920	genome.wustl.edu	37	16	68087518	68087518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017803.3	+1	provisional	p.R75H	1.000	242	0.4%	139	15.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dus,superfamily_FMN-linked oxidoreductases
ZFP90	146198	genome.wustl.edu	37	16	68597461	68597461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000327567	+1	known	p.P29L	0.955	115	0.9%	71	25.4%	-	-	benign(0.009)	tolerated(0.39)	neutral(0.017)	NULL
CDH1	999	genome.wustl.edu	37	16	68867274	68867274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004360.3	+1	reviewed	p.E841K	0.970	169	0%	122	38.5%	-	-	possibly_damaging(0.948)	tolerated(0.16)	neutral(0.451)	HMMPfam_Cadherin_C
TMCO7	79613	genome.wustl.edu	37	16	68893913	68893913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024562.1	+1	validated	p.R74K	0.795	164	0%	116	28.4%	-	-	possibly_damaging(0.68)	tolerated(0.51)	neutral(0.252)	NULL
TMCO7	79613	genome.wustl.edu	37	16	68894402	68894402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024562.1	+1	validated	p.R237I	0.038	124	0%	70	15.7%	-	-	benign(0.03)	deleterious(0.02)	neutral(0.385)	NULL
TMCO7	79613	genome.wustl.edu	37	16	68934385	68934385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024562.1	+1	validated	p.L476F	0.854	787	0%	418	34.7%	-	-	benign(0.01)	tolerated(0.58)	neutral(0.005)	superfamily_ARM repeat,HMMPfam_DUF2435
VPS4A	27183	genome.wustl.edu	37	16	69354623	69354623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013245.2	+1	reviewed	p.L268I	1.000	81	0%	65	30.8%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
TERF2	7014	genome.wustl.edu	37	16	69402327	69402327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005652.2	-1	reviewed	p.K258T	0.994	593	0%	334	31.4%	-	-	benign(0.15)	tolerated(0.33)	neutral(0.037)	NULL
PDPR	55066	genome.wustl.edu	37	16	70177542	70177542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017990.3	+1	validated	p.A579S	1.000	307	0%	184	20.7%	-	-	benign(0.024)	deleterious(0.04)	neutral(0.350)	HMMPfam_GCV_T,superfamily_SSF103025
PDPR	55066	genome.wustl.edu	37	16	70190750	70190750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017990.3	+1	validated	p.D870Y	1.000	167	0.6%	126	23%	-	-	possibly_damaging(0.708)	tolerated(0.13)	deleterious(0.508)	NULL
DDX19B	11269	genome.wustl.edu	37	16	70346536	70346536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007242.4	+1	reviewed	p.E28K	1.000	581	0%	282	14.2%	-	-	possibly_damaging(0.442)	tolerated(0.08)	neutral(0.445)	NULL
DDX19B	11269	genome.wustl.edu	37	16	70366965	70366965	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007242.4	+1	reviewed	p.I427	0.996	374	0%	263	26.2%	-	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
SF3B3	23450	genome.wustl.edu	37	16	70588972	70588972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012426.4	+1	reviewed	p.R525W	1.000	338	0%	181	32.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SF3B3	23450	genome.wustl.edu	37	16	70597801	70597801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012426.4	+1	reviewed	p.G771S	1.000	405	0%	224	33%	-	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	NULL
IL34	146433	genome.wustl.edu	37	16	70688526	70688526	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152456.2	+1	validated	p.T38	0.014	411	0%	294	38.1%	-	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70852311	70852311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.F4863L	0.783	173	0%	152	34.2%	-	-	benign(0.007)	tolerated(0.38)	neutral(0.018)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70955078	70955078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.E2400K	0.998	207	0%	142	27.5%	-	-	possibly_damaging(0.806)	tolerated(0.29)	neutral(0.333)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71012932	71012932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.Y1507C	1.000	856	0%	521	24.4%	-	-	probably_damaging(0.983)	tolerated(0.09)	deleterious(0.726)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71163646	71163646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.R375Q	1.000	378	0%	237	20.3%	-	-	benign(0.046)	tolerated(0.57)	neutral(0.009)	NULL
FTSJD1	55783	genome.wustl.edu	37	16	71318755	71318755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099642.1	-1	validated	p.L357I	1.000	124	0%	77	35.1%	-	-	possibly_damaging(0.526)	tolerated(0.13)	neutral(0.430)	NULL
ZNF23	7571	genome.wustl.edu	37	16	71483436	71483436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145911.1	-1	provisional	p.E164D	0.092	117	0%	88	39.8%	-	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
ZNF23	7571	genome.wustl.edu	37	16	71487970	71487970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145911.1	-1	provisional	p.E3D	1.000	470	0%	191	27.2%	-	-	possibly_damaging(0.783)	deleterious(0)	deleterious(0.738)	HMMSmart_KRAB
ZNF19	7567	genome.wustl.edu	37	16	71509236	71509236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006961.3	-1	reviewed	p.R405I	0.023	284	0%	163	34.4%	-	-	possibly_damaging(0.446)	deleterious(0.05)	deleterious(0.491)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF19	7567	genome.wustl.edu	37	16	71509842	71509842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006961.3	-1	reviewed	p.S203L	0.000	268	0%	173	27.2%	-	-	probably_damaging(0.979)	tolerated(0.32)	neutral(0.446)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF19	7567	genome.wustl.edu	37	16	71512807	71512807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006961.3	-1	reviewed	p.E45D	1.000	351	0%	171	35.7%	-	-	possibly_damaging(0.636)	deleterious(0.02)	deleterious(0.606)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
TAT	6898	genome.wustl.edu	37	16	71604296	71604296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000353.2	-1	reviewed	p.R306Q	1.000	103	0%	44	38.6%	-	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
PHLPP2	23035	genome.wustl.edu	37	16	71682808	71682808	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015020.2	-1	validated	p.F1319	1.000	93	0%	68	17.6%	-	-	-	-	-	NULL
ATXN1L	342371	genome.wustl.edu	37	16	71885267	71885267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137675.2	+1	validated	p.E542K	1.000	195	0.5%	141	35.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_AXH,superfamily_Ataxin-1_HBP1
PMFBP1	83449	genome.wustl.edu	37	16	72188118	72188118	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031293.2	-1	validated	p.E136*	1.000	296	0%	141	13.5%	-	-	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72821815	72821815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.D3454N	1.000	80	0%	47	48.9%	-	-	unknown(0)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72828389	72828389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.R2731Q	1.000	76	0%	50	36%	-	-	possibly_damaging(0.949)	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72828693	72828693	+	Missense_Mutation	SNP	C	C	T	rs145288413	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.D2630N	1.000	298	0.3%	157	22.3%	-	-	probably_damaging(0.99)	-	-	superfamily_Homeodomain-like
ZFHX3	463	genome.wustl.edu	37	16	72830892	72830892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.E1897K	1.000	521	0%	272	35.7%	-	-	unknown(0)	-	-	NULL
ENSG00000226351	0	genome.wustl.edu	37	16	73127011	73127011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433532	+1	known	p.R19I	0.000	333	0%	202	31.7%	-	-	-	-	-	NULL
LOC100289496	100289496	genome.wustl.edu	37	16	73164972	73164972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344114.1	-1	model	p.E53K	0.000	475	0%	204	61.8%	-	-	benign(0.35)	-	-	NULL
NPIPL2	440348	genome.wustl.edu	37	16	74425638	74425638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429990	+1	known	p.P331H	0.033	464	0%	424	11.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NPIP
MLKL	197259	genome.wustl.edu	37	16	74719432	74719432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152649.2	-1	validated	p.E258K	1.000	462	0%	305	29.5%	-	-	benign(0.311)	deleterious(0.03)	neutral(0.462)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZFP1	162239	genome.wustl.edu	37	16	75203619	75203619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153688.2	+1	validated	p.R204I	1.000	110	0%	63	41.3%	-	-	possibly_damaging(0.727)	deleterious(0.01)	deleterious(0.670)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BCAR1	9564	genome.wustl.edu	37	16	75269100	75269100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014567.3	-1	validated	p.R566Q	0.145	12	0%	13	61.5%	-	-	probably_damaging(0.989)	tolerated(0.6)	neutral(0.444)	HMMPfam_Serine_rich
BCAR1	9564	genome.wustl.edu	37	16	75276891	75276891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014567.3	-1	validated	p.T37M	1.000	85	0%	69	34.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CHST6	4166	genome.wustl.edu	37	16	75513135	75513135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021615.4	-1	reviewed	p.V198M	1.000	36	0%	41	34.1%	-	-	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
CHST6	4166	genome.wustl.edu	37	16	75513562	75513562	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021615.4	-1	reviewed	p.F55	1.000	16	0%	14	57.1%	-	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
TERF2IP	54386	genome.wustl.edu	37	16	75690213	75690213	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018975.3	+1	reviewed	p.E302*	0.757	115	0%	79	34.2%	-	-	-	-	-	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76523650	76523650	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033401.3	+1	reviewed	p.R650K	0.835	134	0%	56	25%	-	-	-	-	-	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76587179	76587179	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138994.3	+1	validated	e21-1	1.000	98	0%	59	33.9%	-	-	-	-	-	-
ADAMTS18	170692	genome.wustl.edu	37	16	77353859	77353859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199355.2	-1	reviewed	p.D807N	1.000	94	0%	70	51.4%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_ADAM_spacer1
VAT1L	57687	genome.wustl.edu	37	16	78005746	78005746	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020927.1	+1	provisional	e8-1	1.000	184	0%	113	38.1%	-	-	-	-	-	-
CLEC3A	10143	genome.wustl.edu	37	16	78064613	78064613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005752.3	+1	validated	p.A157S	0.950	140	0%	121	25.6%	-	-	benign(0)	tolerated(0.85)	neutral(0.001)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
CMC2	56942	genome.wustl.edu	37	16	81030951	81030951	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020188.3	-1	validated	p.L17	1.000	546	0%	317	11.7%	-	-	-	-	-	HMMPfam_Cmc1
CENPN	55839	genome.wustl.edu	37	16	81045684	81045684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100625.1	+1	validated	p.S47Y	0.000	269	0%	148	39.2%	-	-	benign(0.005)	tolerated(1)	-	HMMPfam_CHL4
ATMIN	23300	genome.wustl.edu	37	16	81075941	81075941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015251.2	+1	validated	p.S173L	0.939	139	0%	54	38.9%	-	-	probably_damaging(0.975)	tolerated(0.28)	neutral(0.449)	HMMSmart_SM00355
PKD1L2	114780	genome.wustl.edu	37	16	81219103	81219103	+	Missense_Mutation	SNP	C	C	T	rs114183450	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076780.1	-1	reviewed	p.R664Q	0.059	71	0%	64	14.1%	-	-	benign(0.012)	tolerated(0.84)	neutral(0.001)	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81219188	81219188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076780.1	-1	reviewed	p.R636C	0.443	44	0%	49	36.7%	-	-	possibly_damaging(0.916)	deleterious(0.02)	deleterious(0.750)	NULL
BCMO1	53630	genome.wustl.edu	37	16	81272516	81272516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017429.2	+1	reviewed	p.M1I	0.305	181	0%	81	33.3%	-	-	possibly_damaging(0.77)	deleterious(0)	deleterious(0.730)	HMMPfam_RPE65
GAN	8139	genome.wustl.edu	37	16	81385256	81385256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022041.3	+1	reviewed	p.S79L	1.000	355	0%	174	41.4%	-	-	possibly_damaging(0.927)	deleterious(0.01)	deleterious(0.780)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
PLCG2	5336	genome.wustl.edu	37	16	81888096	81888096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002661.2	+1	validated	p.D81Y	1.000	176	0%	97	33%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
HSD17B2	3294	genome.wustl.edu	37	16	82104725	82104725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002153.2	+1	validated	p.S219R	1.000	265	0%	150	16%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
NECAB2	54550	genome.wustl.edu	37	16	84012114	84012114	+	Nonsense_Mutation	SNP	G	G	T	rs143707961	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019065.2	+1	provisional	p.E98*	1.000	272	0%	155	31%	-	-	-	-	-	HMMSmart_EFh,superfamily_SSF47473
NECAB2	54550	genome.wustl.edu	37	16	84034371	84034371	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019065.2	+1	provisional	p.I335	0.998	384	0%	178	15.7%	-	-	-	-	-	HMMPfam_ABM,superfamily_Dimer_A_B_barrel
SLC38A8	146167	genome.wustl.edu	37	16	84043404	84043404	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080442.1	-1	provisional	p.V431	0.637	78	0%	52	28.8%	-	-	-	-	-	NULL
SLC38A8	146167	genome.wustl.edu	37	16	84056457	84056457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080442.1	-1	provisional	p.R243H	0.000	123	0%	67	40.3%	-	-	benign(0.011)	deleterious(0.05)	neutral(0.346)	HMMPfam_Aa_trans
MBTPS1	8720	genome.wustl.edu	37	16	84089672	84089672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003791.2	-1	reviewed	p.S967L	0.877	260	0%	101	44.6%	-	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
ADAD2	161931	genome.wustl.edu	37	16	84228108	84228108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139174.3	+1	validated	p.T232I	0.160	122	0%	62	33.9%	-	-	possibly_damaging(0.887)	tolerated(0.09)	deleterious(0.643)	HMMPfam_dsrm
KCNG4	93107	genome.wustl.edu	37	16	84270788	84270788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172347.1	-1	reviewed	p.D102N	1.000	58	0%	34	47.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_K_tetra,superfamily_POZ domain
KIAA0182	23199	genome.wustl.edu	37	16	85689517	85689517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014615.2	+1	validated	p.A328V	0.253	37	0%	23	39.1%	-	-	unknown(0)	tolerated(0.06)	-	NULL
KIAA0182	23199	genome.wustl.edu	37	16	85697156	85697156	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000438180	+1	known	p.S62L	0.969	140	0%	96	34.4%	-	-	-	-	-	NULL
COX4I1	1327	genome.wustl.edu	37	16	85838590	85838590	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001861.2	+1	reviewed	p.R41	0.999	159	0%	53	37.7%	-	-	-	-	-	HMMPfam_COX4,superfamily_Mitochondrial cytochrome c oxidase subunit IV
FBXO31	79791	genome.wustl.edu	37	16	87377315	87377315	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024735.3	-1	validated	p.V182	0.970	136	0%	97	46.4%	-	-	-	-	-	NULL
MAP1LC3B	81631	genome.wustl.edu	37	16	87432442	87432442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022818.4	+1	reviewed	p.R21Q	0.935	339	0%	201	34.3%	-	-	benign(0.004)	tolerated(0.52)	neutral(0.009)	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
ZCCHC14	23174	genome.wustl.edu	37	16	87446128	87446128	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015144.2	-1	validated	p.V596	0.019	62	0%	47	42.6%	-	-	-	-	-	NULL
JPH3	57338	genome.wustl.edu	37	16	87678316	87678316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020655.2	+1	reviewed	p.D279N	1.000	75	0%	72	38.9%	-	-	possibly_damaging(0.679)	tolerated(0.07)	deleterious(0.561)	NULL
ZC3H18	124245	genome.wustl.edu	37	16	88694366	88694366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144604.3	+1	validated	p.R770W	1.000	140	0%	43	39.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88786329	88786329	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451779	-1	known	p.F1605	0.956	97	0%	45	40%	-	-	-	-	-	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88787640	88787640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451779	-1	known	p.R1405C	0.001	85	0%	77	29.9%	-	-	possibly_damaging(0.937)	tolerated(0.13)	deleterious(0.635)	NULL
CDT1	81620	genome.wustl.edu	37	16	88873739	88873739	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030928.3	+1	validated	p.P442	0.002	52	0%	26	30.8%	-	-	-	-	-	NULL
CDT1	81620	genome.wustl.edu	37	16	88873815	88873815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030928.3	+1	validated	p.E468K	0.998	56	0%	44	34.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
APRT	353	genome.wustl.edu	37	16	88876199	88876199	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000485.2	-1	reviewed	p.V150	0.975	99	0%	73	34.2%	-	-	-	-	-	HMMPfam_Pribosyltran,superfamily_SSF53271
GALNS	2588	genome.wustl.edu	37	16	88898499	88898499	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000512.4	-1	reviewed	p.N303	0.209	54	0%	55	32.7%	-	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
PABPN1L	390748	genome.wustl.edu	37	16	88931331	88931331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080487.1	-1	provisional	p.F195S	1.000	27	0%	20	30%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CDH15	1013	genome.wustl.edu	37	16	89254642	89254642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004933.2	+1	reviewed	p.F309L	0.037	53	0%	38	28.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ANKRD11	29123	genome.wustl.edu	37	16	89349023	89349023	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.T1309	0.006	95	0%	63	34.9%	-	-	-	-	-	superfamily_Ankyrin repeat
ANKRD11	29123	genome.wustl.edu	37	16	89350504	89350504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.E816K	0.983	187	0%	95	37.9%	-	-	benign(0.092)	deleterious(0.03)	neutral(0.371)	superfamily_Ankyrin repeat
CHMP1A	5119	genome.wustl.edu	37	16	89715821	89715821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083314.1	-1	validated	p.S57L	1.000	133	0%	79	50.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C16orf7	9605	genome.wustl.edu	37	16	89776302	89776302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004913.2	-1	validated	p.S424L	0.998	82	0%	56	37.5%	-	-	probably_damaging(0.995)	tolerated(0.25)	deleterious(0.494)	superfamily_SSF109993
SPIRE2	84501	genome.wustl.edu	37	16	89922085	89922085	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032451.1	+1	validated	p.P323	0.000	67	0%	53	37.7%	-	-	-	-	-	NULL
MC1R	4157	genome.wustl.edu	37	16	89986080	89986080	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002386.3	+1	reviewed	p.I138	0.191	65	0%	55	25.5%	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
DEF8	54849	genome.wustl.edu	37	16	90030922	90030922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207514.1	+1	validated	p.V459M	1.000	68	0%	81	39.5%	-	-	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	HMMSmart_SM00109,superfamily_Cysteine-rich domain
PRDM7	11105	genome.wustl.edu	37	16	90124735	90124735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098173.1	-1	reviewed	p.P481S	0.510	268	0%	146	33.6%	-	-	benign(0)	-	-	NULL
VPS53	55275	genome.wustl.edu	37	17	559187	559187	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128159.1	-1	reviewed	p.E127*	1.000	417	0%	205	34.6%	-	-	-	-	-	HMMPfam_Vps53_N
VPS53	55275	genome.wustl.edu	37	17	613778	613778	+	Missense_Mutation	SNP	C	C	T	rs150204494	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128159.1	-1	reviewed	p.E55K	1.000	332	0%	181	36.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vps53_N
GEMIN4	50628	genome.wustl.edu	37	17	649240	649240	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015721.2	-1	reviewed	p.N681	0.000	100	0%	50	42%	-	-	-	-	-	NULL
YWHAE	7531	genome.wustl.edu	37	17	1265279	1265279	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006761.4	-1	reviewed	p.I96	1.000	74	0%	40	32.5%	-	-	-	-	-	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
YWHAE	7531	genome.wustl.edu	37	17	1268292	1268292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006761.4	-1	reviewed	p.R42I	1.000	497	0.4%	256	41.8%	-	-	possibly_damaging(0.818)	deleterious(0.01)	deleterious(0.715)	HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,superfamily_14-3-3 protein
LOC100288617	100288617	genome.wustl.edu	37	17	1479996	1479996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343497.1	+1	model	p.E262K	0.803	28	0%	25	28%	-	-	-	-	-	NULL
RILP	83547	genome.wustl.edu	37	17	1549777	1549777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031430.2	-1	validated	p.E389*	0.000	138	0%	96	26%	-	-	-	-	-	NULL
PRPF8	10594	genome.wustl.edu	37	17	1564650	1564650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.R1418Q	1.000	365	0%	201	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMYD4	114826	genome.wustl.edu	37	17	1690859	1690859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052928.2	-1	validated	p.R526H	1.000	140	0%	102	17.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SET domain
SMG6	23293	genome.wustl.edu	37	17	2202843	2202843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017575.4	-1	validated	p.R402W	1.000	165	0.6%	102	32.4%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SRR	63826	genome.wustl.edu	37	17	2222205	2222205	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021947.1	+1	provisional	p.Y127	0.994	235	0%	133	33.1%	-	-	-	-	-	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
TSR1	55720	genome.wustl.edu	37	17	2236293	2236293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018128.4	-1	validated	p.D423Y	1.000	425	0%	230	32.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SGSM2	9905	genome.wustl.edu	37	17	2270594	2270594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014853.2	+1	validated	p.S440G	1.000	61	0%	58	36.2%	-	-	possibly_damaging(0.799)	tolerated(0.2)	neutral(0.350)	NULL
SGSM2	9905	genome.wustl.edu	37	17	2276371	2276371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014853.2	+1	validated	p.E638G	1.000	112	0%	79	30.4%	-	-	benign(0.07)	tolerated(0.16)	neutral(0.065)	HMMSmart_TBC,superfamily_RabGAP_TBC
KIAA0664	23277	genome.wustl.edu	37	17	2598285	2598285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015229.3	-1	validated	p.K867N	1.000	212	0%	122	31.1%	-	-	benign(0.15)	deleterious(0.02)	neutral(0.396)	NULL
OR1D2	4991	genome.wustl.edu	37	17	2995907	2995907	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002548.2	-1	validated	p.C128	0.894	360	0%	263	33.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1G1	8390	genome.wustl.edu	37	17	3030538	3030538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003555.1	-1	provisional	p.F103C	0.888	157	0%	65	44.6%	-	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_7tm_1,superfamily_SSF81321
OR3A3	8392	genome.wustl.edu	37	17	3324419	3324419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012373.2	+1	validated	p.F186L	1.000	488	0%	268	20.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
SPATA22	84690	genome.wustl.edu	37	17	3352262	3352262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032598.4	-1	validated	p.E171*	0.026	606	0%	290	32.8%	-	-	-	-	-	NULL
SPATA22	84690	genome.wustl.edu	37	17	3370780	3370780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032598.4	-1	validated	p.K38E	1.000	342	0%	190	36.3%	-	-	benign(0.026)	tolerated(0.22)	neutral(0.043)	NULL
ATP2A3	489	genome.wustl.edu	37	17	3844743	3844743	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174953.1	-1	reviewed	p.F584C	1.000	76	0%	55	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP2A3	489	genome.wustl.edu	37	17	3844886	3844886	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174953.1	-1	reviewed	p.P536	0.982	41	0%	41	29.3%	-	-	-	-	-	HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ZZEF1	23140	genome.wustl.edu	37	17	3920917	3920917	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015113.3	-1	validated	p.R2583	0.958	172	0%	148	37.8%	-	-	-	-	-	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3935507	3935507	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015113.3	-1	validated	p.E2269*	1.000	286	0%	144	38.9%	-	-	-	-	-	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3984717	3984717	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015113.3	-1	validated	p.E928*	0.983	105	0%	71	25.4%	-	-	-	-	-	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3999173	3999173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015113.3	-1	validated	p.K622T	1.000	283	0%	131	17.6%	-	-	benign(0.389)	deleterious(0)	deleterious(0.569)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	4027298	4027298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015113.3	-1	validated	p.E134D	1.000	260	0%	164	12.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
SPNS2	124976	genome.wustl.edu	37	17	4436575	4436575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001124758.1	+1	provisional	p.L376M	0.990	41	0%	29	44.8%	-	-	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
GGT6	124975	genome.wustl.edu	37	17	4462341	4462341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122890.1	-1	validated	p.W151R	0.999	42	0%	32	31.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_G_glu_transpept
SMTNL2	342527	genome.wustl.edu	37	17	4496467	4496467	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114974.1	+1	validated	e3+1	0.999	40	0%	38	31.6%	-	-	-	-	-	-
TM4SF5	9032	genome.wustl.edu	37	17	4685877	4685877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003963.2	+1	reviewed	p.R113Q	0.129	142	0%	107	33.6%	-	-	benign(0.029)	tolerated(0.57)	neutral(0.007)	HMMPfam_L6_membrane
ENSG00000249874	0	genome.wustl.edu	37	17	4692136	4692136	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510649	-1	known	NULL	0.002	12	0.000	9	0.444	-	-	-	-	-	-
GLTPD2	388323	genome.wustl.edu	37	17	4692388	4692388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014985.1	+1	provisional	p.L28F	0.002	119	0%	69	31.9%	-	-	possibly_damaging(0.828)	deleterious(0)	deleterious(0.758)	NULL
PSMB6	5694	genome.wustl.edu	37	17	4700750	4700750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002798.1	+1	reviewed	p.R63Q	1.000	176	0%	113	42.5%	-	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_Proteasome,PatternScan_PROTEASOME_B,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
PLD2	5338	genome.wustl.edu	37	17	4711611	4711611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002663.3	+1	validated	p.D95N	0.599	156	0%	89	22.5%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
GP1BA	2811	genome.wustl.edu	37	17	4837384	4837384	+	Silent	SNP	C	C	T	rs148656162	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000173.5	+1	reviewed	p.I482	0.000	181	0%	90	36.7%	-	-	-	-	-	NULL
SPAG7	9552	genome.wustl.edu	37	17	4863824	4863824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004890.2	-1	validated	p.D58N	1.000	474	0%	286	40.9%	-	-	benign(0.005)	tolerated(0.38)	neutral(0.018)	HMMPfam_R3H,HMMSmart_R3H,superfamily_SSF82708
CAMTA2	23125	genome.wustl.edu	37	17	4876485	4876485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015099.3	-1	validated	p.F755L	1.000	298	0%	149	37.6%	-	-	possibly_damaging(0.631)	tolerated(0.56)	neutral(0.227)	HMMPfam_Ank,superfamily_Ankyrin repeat
INCA1	388324	genome.wustl.edu	37	17	4892100	4892100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213726.2	-1	validated	p.R164C	0.000	260	0%	138	37%	-	-	probably_damaging(0.988)	tolerated(0.14)	deleterious(0.687)	NULL
KIF1C	10749	genome.wustl.edu	37	17	4905839	4905839	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006612.5	+1	validated	p.E170	1.000	201	0%	125	33.6%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF1C	10749	genome.wustl.edu	37	17	4906119	4906119	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006612.5	+1	validated	p.T234	0.025	128	0.8%	102	43.1%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF1C	10749	genome.wustl.edu	37	17	4926781	4926781	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006612.5	+1	validated	p.E883*	0.999	48	0%	33	24.2%	-	-	-	-	-	NULL
USP6	9098	genome.wustl.edu	37	17	5041492	5041492	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004505.2	+1	validated	p.N334	0.128	173	0%	101	36.6%	-	-	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
RABEP1	9135	genome.wustl.edu	37	17	5235304	5235304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004703.4	+1	validated	p.R75Q	1.000	325	0%	133	42.9%	-	-	benign(0.033)	tolerated(0.36)	neutral(0.022)	NULL
RABEP1	9135	genome.wustl.edu	37	17	5280483	5280483	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004703.4	+1	validated	p.E700*	1.000	182	0%	62	43.5%	-	-	-	-	-	HMMPfam_Rab5-bind
RABEP1	9135	genome.wustl.edu	37	17	5281513	5281513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004703.4	+1	validated	p.V753M	0.951	251	0%	107	34.6%	-	-	benign(0.013)	tolerated(0.1)	neutral(0.287)	HMMPfam_Rab5-bind
RABEP1	9135	genome.wustl.edu	37	17	5284730	5284730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004703.4	+1	validated	p.R806I	1.000	277	0%	128	39.8%	-	-	possibly_damaging(0.91)	tolerated(0.08)	deleterious(0.662)	HMMPfam_Rab5-bind
FAM64A	54478	genome.wustl.edu	37	17	6348690	6348690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019013.1	+1	provisional	p.R87H	0.997	127	0%	58	15.5%	-	-	benign(0.028)	tolerated(0.15)	neutral(0.242)	HMMPfam_DUF1466
KIAA0753	9851	genome.wustl.edu	37	17	6515254	6515254	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014804.2	-1	validated	p.A510	0.000	409	0%	258	22.5%	-	-	-	-	-	NULL
CLEC10A	10462	genome.wustl.edu	37	17	6978690	6978690	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182906.2	-1	reviewed	p.A257	0.000	201	0%	154	11.7%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ACADVL	37	genome.wustl.edu	37	17	7124898	7124898	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000018.2	+1	reviewed	p.G173	0.122	125	0%	62	33.9%	-	-	-	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
DVL2	1856	genome.wustl.edu	37	17	7132592	7132592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004422.2	-1	reviewed	p.E273D	1.000	178	0%	117	43.6%	-	-	benign(0.07)	tolerated(0.52)	neutral(0.014)	HMMPfam_PDZ,superfamily_PDZ domain-like
SLC2A4	6517	genome.wustl.edu	37	17	7187948	7187948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042.2	+1	reviewed	p.A291V	0.995	68	0%	64	40.6%	-	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
KCTD11	147040	genome.wustl.edu	37	17	7256762	7256762	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002914.2	+1	validated	p.P167	0.004	31	0%	26	53.8%	-	-	-	-	-	NULL
SLC35G6	643664	genome.wustl.edu	37	17	7386013	7386013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102614.1	+1	provisional	p.G237D	0.938	305	0%	256	35.2%	-	-	benign(0.299)	tolerated(0.09)	neutral(0.389)	HMMPfam_DUF6,superfamily_SSF103481
POLR2A	5430	genome.wustl.edu	37	17	7416821	7416821	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000937.3	+1	validated	p.P1746	0.999	1705	0.2%	1102	39.2%	-	-	-	-	-	HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT
TNFSF12-TNFSF13	407977	genome.wustl.edu	37	17	7463447	7463447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172089.2	+1	reviewed	p.R236Q	0.993	79	0%	51	33.3%	-	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_TNF,HMMSmart_TNF,PatternScan_TNF_1,superfamily_TNF_like
CD68	968	genome.wustl.edu	37	17	7483613	7483613	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001251.2	+1	reviewed	p.R179*	0.171	303	0.3%	160	36.2%	-	-	-	-	-	HMMPfam_Lamp
FXR2	9513	genome.wustl.edu	37	17	7509051	7509051	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004860.3	-1	reviewed	p.Q47P	1.000	279	0%	131	35.1%	-	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
SAT2	112483	genome.wustl.edu	37	17	7530328	7530328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133491.3	-1	validated	p.F79L	1.000	150	0%	78	29.5%	-	-	benign(0.128)	tolerated(0.11)	neutral(0.282)	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase
ATP1B2	482	genome.wustl.edu	37	17	7556709	7556709	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001678.3	+1	reviewed	p.Y44D	1.000	380	0%	213	39.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Na_K-ATPase
TP53	7157	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R213*	0.893	420	0%	220	70.5%	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
TP53	7157	genome.wustl.edu	37	17	7578458	7578458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R158C	0.981	154	0%	87	12.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_p53-like transcription factors,HMMPfam_P53
DNAH2	146754	genome.wustl.edu	37	17	7637556	7637556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.M228I	0.995	389	0.3%	178	28.7%	-	-	benign(0.009)	tolerated(0.38)	neutral(0.018)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7640572	7640572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.R389Q	0.999	204	0%	115	32.2%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DHC_N1
DNAH2	146754	genome.wustl.edu	37	17	7643052	7643052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.V391A	0.997	158	0%	120	35.8%	-	-	possibly_damaging(0.799)	deleterious(0)	deleterious(0.746)	HMMPfam_DHC_N1
DNAH2	146754	genome.wustl.edu	37	17	7662915	7662915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.G875E	0.938	249	0%	166	38%	-	-	possibly_damaging(0.527)	tolerated(1)	neutral(0.178)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7668873	7668873	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.F1167	0.070	184	0%	100	16%	-	-	-	-	-	NULL
DNAH2	146754	genome.wustl.edu	37	17	7671518	7671518	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.K1292Q	0.971	140	0%	110	29.1%	-	-	possibly_damaging(0.822)	tolerated(0.38)	neutral(0.329)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7678097	7678097	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.E1508*	1.000	171	0%	107	36.4%	-	-	-	-	-	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7736718	7736718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.Y4384C	1.000	72	0%	73	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
CHD3	1107	genome.wustl.edu	37	17	7800528	7800528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.P671L	1.000	149	0%	84	26.2%	-	-	benign(0.008)	-	-	NULL
CHD3	1107	genome.wustl.edu	37	17	7803698	7803698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.L984F	1.000	258	0%	141	36.2%	-	-	probably_damaging(1)	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNAB3	9196	genome.wustl.edu	37	17	7830681	7830681	+	Missense_Mutation	SNP	C	C	T	rs184269668	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004732.2	-1	reviewed	p.E129K	1.000	390	0%	214	39.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
ALOX12B	242	genome.wustl.edu	37	17	7979598	7979598	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139.2	-1	reviewed	p.Y476S	0.848	141	0%	88	36.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ALOXE3	59344	genome.wustl.edu	37	17	8006728	8006728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021628.2	-1	reviewed	p.K623N	0.999	493	0%	233	30.5%	-	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ALOXE3	59344	genome.wustl.edu	37	17	8021760	8021760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380149	-1	known	p.S6F	0.002	22	0%	19	21.1%	-	-	unknown(0)	-	-	NULL
PER1	5187	genome.wustl.edu	37	17	8051103	8051103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002616.2	-1	reviewed	p.R426H	1.000	101	0%	63	36.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
SLC25A35	399512	genome.wustl.edu	37	17	8194789	8194789	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201520.1	-1	provisional	p.A152	0.077	67	0%	53	30.2%	-	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
ARHGEF15	22899	genome.wustl.edu	37	17	8218575	8218575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173728.2	+1	reviewed	p.Q414K	1.000	71	0%	41	22%	-	-	benign(0.039)	tolerated(0.23)	neutral(0.044)	superfamily_DH-domain
ODF4	146852	genome.wustl.edu	37	17	8249084	8249084	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153007.4	+1	reviewed	p.E230*	0.000	268	0%	156	34.6%	-	-	-	-	-	NULL
KRBA2	124751	genome.wustl.edu	37	17	8273633	8273633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213597.2	-1	provisional	p.E100*	0.028	454	0%	253	36%	-	-	-	-	-	NULL
NDEL1	81565	genome.wustl.edu	37	17	8363382	8363382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030808.3	+1	reviewed	p.R283Q	1.000	384	0%	179	34.6%	-	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	HMMPfam_NUDE_C
MYH10	4628	genome.wustl.edu	37	17	8395665	8395665	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005964.1	-1	validated	p.R1510*	1.000	163	0%	146	31.5%	-	-	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
GLP2R	9340	genome.wustl.edu	37	17	9760787	9760787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004246.1	+1	reviewed	p.S220Y	1.000	364	0%	211	37.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
GLP2R	9340	genome.wustl.edu	37	17	9783712	9783712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004246.1	+1	reviewed	p.L388P	0.963	386	0%	240	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
GAS7	8522	genome.wustl.edu	37	17	9862611	9862611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003644.2	-1	reviewed	p.E5K	1.000	215	0%	112	25%	-	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
GAS7	8522	genome.wustl.edu	37	17	9885167	9885167	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201433.1	-1	reviewed	p.G113	1.000	90	0%	47	46.8%	-	-	-	-	-	NULL
MYH13	8735	genome.wustl.edu	37	17	10219222	10219222	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003802.2	-1	validated	p.Q1287*	1.000	620	0%	358	33.2%	-	-	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH13	8735	genome.wustl.edu	37	17	10223478	10223478	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003802.2	-1	validated	p.E1114*	1.000	467	0%	227	34.8%	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH13	8735	genome.wustl.edu	37	17	10261056	10261056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003802.2	-1	validated	p.R245I	1.000	342	0%	132	20.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH8	4626	genome.wustl.edu	37	17	10301910	10301910	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002472.2	-1	reviewed	p.C1343	0.995	437	0%	322	35.7%	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH8	4626	genome.wustl.edu	37	17	10304221	10304221	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002472.2	-1	reviewed	p.E1104*	1.000	303	0%	122	16.4%	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10362607	10362607	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.F516	0.978	631	0%	379	36.9%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10404926	10404926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.K1111N	1.000	416	0%	261	27.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10432487	10432487	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.E1116*	1.000	344	0%	216	34.3%	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10433173	10433173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.K972N	1.000	1398	0%	839	25.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
MYH2	4620	genome.wustl.edu	37	17	10446201	10446201	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.E299*	1.000	123	0%	53	17%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH3	4621	genome.wustl.edu	37	17	10537376	10537376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.D1494Y	1.000	343	0%	151	16.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
MYH3	4621	genome.wustl.edu	37	17	10543345	10543345	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.E884*	1.000	476	0%	253	45.5%	-	-	-	-	-	NULL
MYH3	4621	genome.wustl.edu	37	17	10546202	10546202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.E508K	1.000	500	0%	357	29.4%	-	-	benign(0.076)	deleterious(0.03)	neutral(0.370)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
DNAH9	1770	genome.wustl.edu	37	17	11540051	11540051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.D579G	1.000	239	0%	104	37.5%	-	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_DHC_N1
DNAH9	1770	genome.wustl.edu	37	17	11593659	11593659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.A1507V	0.959	155	0%	70	40%	-	-	benign(0.095)	tolerated(0.13)	neutral(0.260)	HMMPfam_DHC_N2
DNAH9	1770	genome.wustl.edu	37	17	11833332	11833332	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.E4009	1.000	162	0%	93	32.3%	-	-	-	-	-	HMMPfam_Dynein_heavy
DNAH9	1770	genome.wustl.edu	37	17	11837215	11837215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.R4106C	1.000	256	0%	123	22.8%	-	-	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_Dynein_heavy
MAP2K4	6416	genome.wustl.edu	37	17	12028639	12028639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003010.2	+1	reviewed	p.R281Q	1.000	378	0.3%	206	37.4%	-	-	probably_damaging(0.983)	tolerated(0.59)	neutral(0.433)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAP2K4	6416	genome.wustl.edu	37	17	12043161	12043161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003010.2	+1	reviewed	p.T349M	1.000	375	0%	150	32.7%	-	-	possibly_damaging(0.841)	tolerated(0.12)	deleterious(0.582)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MYOCD	93649	genome.wustl.edu	37	17	12659733	12659733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425538	+1	known	p.N687K	0.998	120	0%	63	34.9%	-	-	benign(0.312)	tolerated(1)	neutral(0.098)	NULL
ELAC2	60528	genome.wustl.edu	37	17	12901819	12901819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018127.6	-1	reviewed	p.R477I	0.001	272	0%	162	32.1%	-	-	benign(0.055)	tolerated(0.18)	neutral(0.060)	NULL
ENSG00000205325	0	genome.wustl.edu	37	17	14673552	14673552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379640	-1	known	p.K104N	0.000	159	0%	99	36.4%	-	-	unknown(0)	-	-	NULL
TEKT3	64518	genome.wustl.edu	37	17	15212124	15212124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031898.2	-1	reviewed	p.E371D	1.000	342	0%	228	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tektin
TEKT3	64518	genome.wustl.edu	37	17	15231348	15231348	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031898.2	-1	reviewed	p.I208	0.273	388	0%	266	28.2%	-	-	-	-	-	HMMPfam_Tektin
TEKT3	64518	genome.wustl.edu	37	17	15234496	15234496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031898.2	-1	reviewed	p.R136I	0.963	1003	0%	623	36%	-	-	benign(0.196)	deleterious(0.02)	neutral(0.402)	HMMPfam_Tektin
CDRT1	374286	genome.wustl.edu	37	17	15508675	15508675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006382.3	-1	provisional	p.R432Q	1.000	509	0%	292	29.8%	-	-	unknown(0)	deleterious(0.01)	-	superfamily_WD40 repeat-like
ZNF286A	57335	genome.wustl.edu	37	17	15620495	15620495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130842.1	+1	validated	p.R486I	1.000	481	0%	269	37.5%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CDRT15P2	644694	genome.wustl.edu	37	17	15668141	15668141	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_932309.3	+1	model	p.K17	0.000	127	0%	70	37.1%	-	-	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	15976868	15976868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006311.2	-1	reviewed	p.R1229Q	1.000	334	0%	184	35.3%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MIR1288	100302124	genome.wustl.edu	37	17	16185356	16185356	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408428	+1	known	NULL	0.030	150	0%	88	34.1%	-	-	-	-	-	-
UBB	7314	genome.wustl.edu	37	17	16285549	16285549	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018955.2	+1	reviewed	p.E110*	1.000	488	0%	273	33.7%	-	-	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like
TRPV2	51393	genome.wustl.edu	37	17	16330086	16330086	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016113.3	+1	reviewed	p.A382	0.172	206	0%	101	37.6%	-	-	-	-	-	NULL
ZNF287	57336	genome.wustl.edu	37	17	16456559	16456559	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020653.2	-1	validated	p.V299	0.000	100	0%	43	30.2%	-	-	-	-	-	NULL
ZNF624	57547	genome.wustl.edu	37	17	16526037	16526037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020787.2	-1	validated	p.E721D	1.000	282	0%	209	27.8%	-	-	possibly_damaging(0.804)	deleterious(0.05)	deleterious(0.648)	superfamily_C2H2 and C2HC zinc fingers
ZNF624	57547	genome.wustl.edu	37	17	16537200	16537200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020787.2	-1	validated	p.E118*	0.993	370	0%	168	31.5%	-	-	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16638044	16638044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014695.1	+1	provisional	p.E820G	0.749	136	0%	38	23.7%	-	-	unknown(0)	tolerated(0.11)	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16667310	16667310	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014695.1	+1	provisional	p.Q1307*	0.000	329	0%	178	33.7%	-	-	-	-	-	NULL
MPRIP	23164	genome.wustl.edu	37	17	17041269	17041269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015134.2	+1	validated	p.R259H	1.000	53	0%	35	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MPRIP	23164	genome.wustl.edu	37	17	17076099	17076099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015134.2	+1	validated	p.S800L	0.986	57	0%	43	39.5%	-	-	benign(0.196)	tolerated(0.34)	neutral(0.041)	NULL
LRRC48	83450	genome.wustl.edu	37	17	17919894	17919894	+	Missense_Mutation	SNP	G	G	T	rs73303861	byCluster;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130090.1	+1	validated	p.R494M	1.000	182	0%	73	54.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DRG2	1819	genome.wustl.edu	37	17	18010542	18010542	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001388.3	+1	reviewed	p.I361	0.091	56	0%	36	13.9%	-	-	-	-	-	HMMPfam_TGS
MYO15A	51168	genome.wustl.edu	37	17	18025222	18025222	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.K1036	0.014	132	0%	80	33.8%	-	-	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18034585	18034585	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.F1357	0.985	141	0%	70	27.1%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO15A	51168	genome.wustl.edu	37	17	18040945	18040945	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.N1609	0.671	285	0%	145	32.4%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
FLII	2314	genome.wustl.edu	37	17	18157933	18157933	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002018.2	-1	reviewed	p.S159	1.000	128	0%	59	39%	-	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
SMCR8	140775	genome.wustl.edu	37	17	18219626	18219626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144775.2	+1	validated	p.E175K	0.976	121	0.8%	66	21.2%	-	-	benign(0.242)	tolerated(0.24)	neutral(0.062)	NULL
SMCR8	140775	genome.wustl.edu	37	17	18226275	18226275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144775.2	+1	validated	p.V902A	1.000	237	0%	133	36.8%	-	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	NULL
LGALS9C	654346	genome.wustl.edu	37	17	18396067	18396067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040078.2	+1	validated	p.F273S	0.372	417	0%	240	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
LOC645139	645139	genome.wustl.edu	37	17	18554176	18554176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928169.3	+1	model	p.D263G	1.000	380	0%	205	34.1%	-	-	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
ZNF286B	729288	genome.wustl.edu	37	17	18566194	18566194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145045.1	-1	validated	p.D209N	0.698	377	0%	180	35.6%	-	-	-	-	-	NULL
ZNF286B	729288	genome.wustl.edu	37	17	18566462	18566462	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145045.1	-1	validated	p.Q119	0.459	424	0%	246	39%	-	-	-	-	-	NULL
ZNF286B	729288	genome.wustl.edu	37	17	18584120	18584120	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145045.1	-1	validated	p.P20	0.987	483	0%	193	33.2%	-	-	-	-	-	NULL
FBXW10	10517	genome.wustl.edu	37	17	18675989	18675989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031456.3	+1	validated	p.F757L	0.000	109	0%	44	36.4%	-	-	benign(0)	tolerated(1)	-	NULL
FBXW10	10517	genome.wustl.edu	37	17	18682407	18682407	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031456.3	+1	validated	p.F984	0.985	209	0%	120	43.3%	-	-	-	-	-	NULL
FAM18B1	51030	genome.wustl.edu	37	17	18707518	18707518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016078.4	+1	predicted	p.R177H	1.000	621	0%	373	34.6%	-	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
SLC5A10	125206	genome.wustl.edu	37	17	18862004	18862004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152351.3	+1	validated	p.R41W	0.980	233	0%	160	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPN2	22905	genome.wustl.edu	37	17	19186619	19186619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014964.4	+1	reviewed	p.R63W	1.000	193	0%	124	16.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
MFAP4	4239	genome.wustl.edu	37	17	19289699	19289699	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002404.1	-1	reviewed	p.Y55S	1.000	116	0%	78	37.2%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
RNF112	7732	genome.wustl.edu	37	17	19316976	19316976	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007148.4	+1	reviewed	p.T269	0.641	124	0%	71	35.2%	-	-	-	-	-	HMMPfam_GBP,superfamily_SSF52540
SPECC1	92521	genome.wustl.edu	37	17	20108622	20108622	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033553.1	+1	validated	p.T420	0.000	95	0%	56	44.6%	-	-	-	-	-	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20254697	20254697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444742	+1	known	p.R626I	0.002	430	0%	283	29.3%	-	-	-	-	-	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20269306	20269306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425519	+1	known	p.R922I	0.349	134	0%	40	32.5%	-	-	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	NULL
USP22	23326	genome.wustl.edu	37	17	20931877	20931877	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015276.1	-1	validated	p.A94	0.379	148	0%	88	36.4%	-	-	-	-	-	HMMPfam_zf-UBP
WSB1	26118	genome.wustl.edu	37	17	25633863	25633863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015626.8	+1	reviewed	p.F222L	1.000	254	0%	157	36.3%	-	-	benign(0.036)	deleterious(0.04)	neutral(0.351)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WSB1	26118	genome.wustl.edu	37	17	25636285	25636285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015626.8	+1	reviewed	p.L291M	1.000	188	0%	102	30.4%	-	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	superfamily_WD40 repeat-like
LGALS9	3965	genome.wustl.edu	37	17	25958267	25958267	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024043.1	+1	reviewed	NULL	0.000	180	0%	118	42.4%	-	-	-	-	-	-
NOS2	4843	genome.wustl.edu	37	17	26101322	26101322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000625.4	-1	reviewed	p.E479D	1.000	230	0%	142	36.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
NOS2	4843	genome.wustl.edu	37	17	26107839	26107839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000625.4	-1	reviewed	p.E320K	1.000	83	0%	46	23.9%	-	-	possibly_damaging(0.513)	deleterious(0.04)	deleterious(0.521)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
ENSG00000251558	0	genome.wustl.edu	37	17	26206294	26206294	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502259	+1	known	NULL	0.000	19	0%	21	38.1%	-	-	-	-	-	-
NLK	51701	genome.wustl.edu	37	17	26370125	26370125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016231.4	+1	validated	p.A76T	1.000	90	0%	143	42.7%	-	-	benign(0.145)	deleterious(0.01)	neutral(0.418)	NULL
NLK	51701	genome.wustl.edu	37	17	26370186	26370186	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016231.4	+1	validated	p.S96*	1.000	280	0%	256	37.1%	-	-	-	-	-	NULL
TMEM199	147007	genome.wustl.edu	37	17	26687822	26687822	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152464.1	+1	provisional	p.F161	0.870	284	0%	215	38.1%	-	-	-	-	-	NULL
VTN	7448	genome.wustl.edu	37	17	26696530	26696530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000638.3	-1	reviewed	p.R176Q	1.000	54	0%	41	51.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
SLC13A2	9058	genome.wustl.edu	37	17	26817354	26817354	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444914	+1	known	p.F43	0.000	57	0%	49	32.7%	-	-	-	-	-	NULL
UNC119	9094	genome.wustl.edu	37	17	26874734	26874734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005148.3	-1	reviewed	p.E191K	1.000	175	0%	79	24.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GMP_PDE_delta,superfamily_E set domains
TLCD1	116238	genome.wustl.edu	37	17	27051724	27051724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138463.3	-1	validated	p.R183H	1.000	215	0%	110	38.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
PIPOX	51268	genome.wustl.edu	37	17	27381634	27381634	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016518.2	+1	validated	p.P244	0.019	475	0.4%	316	40.5%	-	-	-	-	-	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
MYO18A	399687	genome.wustl.edu	37	17	27441106	27441106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078471.3	-1	validated	p.E841K	1.000	147	0%	87	43.7%	-	-	possibly_damaging(0.911)	tolerated(0.24)	neutral(0.400)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TAOK1	57551	genome.wustl.edu	37	17	27857552	27857552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020791.1	+1	validated	p.R759Q	1.000	207	0%	72	27.8%	-	-	possibly_damaging(0.938)	tolerated(0.43)	neutral(0.397)	superfamily_Protein kinase-like (PK-like)
GIT1	28964	genome.wustl.edu	37	17	27905324	27905324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085454.1	-1	validated	p.N301K	1.000	336	0%	183	38.3%	-	-	possibly_damaging(0.49)	deleterious(0.02)	deleterious(0.546)	HMMPfam_GIT_SHD,HMMSmart_GIT
ANKRD13B	124930	genome.wustl.edu	37	17	27934791	27934791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152345.4	+1	validated	p.R49Q	1.000	20	0%	14	35.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
EFCAB5	374786	genome.wustl.edu	37	17	28323342	28323342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198529.3	+1	validated	p.L313I	0.997	243	0%	145	37.9%	-	-	possibly_damaging(0.569)	deleterious(0)	deleterious(0.639)	superfamily_EF-hand
EFCAB5	374786	genome.wustl.edu	37	17	28380998	28380998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198529.3	+1	validated	p.D676Y	0.000	210	0%	85	42.4%	-	-	possibly_damaging(0.523)	tolerated(0.19)	neutral(0.226)	superfamily_EF-hand
NSRP1	84081	genome.wustl.edu	37	17	28507952	28507952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032141.2	+1	validated	p.D179Y	1.000	415	0%	198	36.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2040
TMIGD1	388364	genome.wustl.edu	37	17	28645840	28645840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206832.1	-1	provisional	p.K244N	0.019	453	0%	212	34.4%	-	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
ATAD5	79915	genome.wustl.edu	37	17	29162381	29162381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024857.3	+1	provisional	p.D428Y	1.000	109	0%	50	38%	-	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
TEFM	79736	genome.wustl.edu	37	17	29231479	29231479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024683.3	-1	validated	p.R34W	0.426	116	0%	63	33.3%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
LOC646021	646021	genome.wustl.edu	37	17	29349051	29349051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_933339.3	+1	model	p.R277I	1.000	70	0%	29	17.2%	-	-	-	-	-	NULL
ENSG00000250288	0	genome.wustl.edu	37	17	29351278	29351278	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504550	+1	novel	NULL	0.492	24	0%	14	28.6%	-	-	-	-	-	-
NF1	4763	genome.wustl.edu	37	17	29483109	29483109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.G57S	1.000	303	0%	131	39.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EVI2A	2123	genome.wustl.edu	37	17	29646015	29646015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003927.2	-1	validated	p.E29G	0.330	350	0%	157	31.2%	-	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_EVI2A
NF1	4763	genome.wustl.edu	37	17	29664521	29664521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.S2188F	1.000	431	0%	217	26.7%	-	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
C17orf75	64149	genome.wustl.edu	37	17	30662353	30662353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022344.2	-1	validated	p.L220M	1.000	247	0%	161	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C17orf75	64149	genome.wustl.edu	37	17	30665290	30665290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022344.2	-1	validated	p.S143Y	0.797	300	0%	144	41%	-	-	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
PSMD11	5717	genome.wustl.edu	37	17	30806902	30806902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002815.2	+1	reviewed	p.K358E	1.000	425	0%	270	32.2%	-	-	benign(0)	tolerated(0.91)	-	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
TMEM98	26022	genome.wustl.edu	37	17	31260313	31260313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033504.1	+1	validated	p.E85K	1.000	230	0%	142	12%	-	-	possibly_damaging(0.887)	tolerated(0.16)	neutral(0.406)	NULL
TMEM98	26022	genome.wustl.edu	37	17	31263370	31263370	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033504.1	+1	validated	p.E106	1.000	161	0%	152	38.8%	-	-	-	-	-	NULL
SPACA3	124912	genome.wustl.edu	37	17	31324751	31324751	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173847.3	+1	provisional	p.C201	1.000	350	0%	165	37.6%	-	-	-	-	-	HMMPfam_Lys,HMMSmart_SM00263,superfamily_Lysozyme-like
ASIC2	40	genome.wustl.edu	37	17	31355330	31355330	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183377.1	-1	reviewed	p.T356	1.000	144	0%	83	44.6%	-	-	-	-	-	HMMPfam_ASC,PatternScan_ASC
ENSG00000226049	0	genome.wustl.edu	37	17	32366765	32366765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430493	-1	known	p.G42R	0.762	293	0%	145	34.5%	-	-	-	-	-	NULL
UNC45B	146862	genome.wustl.edu	37	17	33481676	33481676	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173167.2	+1	validated	p.L185	1.000	182	0%	112	42.9%	-	-	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
UNC45B	146862	genome.wustl.edu	37	17	33513534	33513534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173167.2	+1	validated	p.L918I	1.000	367	0%	175	33.7%	-	-	benign(0.25)	deleterious(0.01)	neutral(0.431)	superfamily_ARM repeat
SLFN5	162394	genome.wustl.edu	37	17	33591481	33591481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144975.3	+1	validated	p.S473Y	0.004	339	0%	169	29.6%	-	-	benign(0.354)	deleterious(0)	deleterious(0.556)	NULL
SLFN5	162394	genome.wustl.edu	37	17	33592266	33592266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144975.3	+1	validated	p.L679I	1.000	397	0%	244	30.7%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33680971	33680971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104587.1	-1	validated	p.R436W	0.000	213	0.5%	129	24.8%	-	-	possibly_damaging(0.946)	deleterious(0.02)	deleterious(0.773)	NULL
SLFN12L	100506736	genome.wustl.edu	37	17	33802073	33802073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145027.1	-1	validated	p.A575T	0.000	683	0%	334	15%	-	-	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
SLFN14	342618	genome.wustl.edu	37	17	33879838	33879838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129820.1	-1	provisional	p.K605N	0.994	196	0.5%	91	30.8%	-	-	possibly_damaging(0.602)	deleterious(0)	deleterious(0.653)	NULL
AP2B1	163	genome.wustl.edu	37	17	33925251	33925251	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030006.1	+1	reviewed	p.E14*	1.000	275	0%	121	35.5%	-	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP2B1	163	genome.wustl.edu	37	17	33977553	33977553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030006.1	+1	reviewed	p.S514Y	1.000	349	0%	191	35.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Adaptin_N,superfamily_ARM repeat
GAS2L2	246176	genome.wustl.edu	37	17	34071964	34071964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139285.2	-1	validated	p.P851L	0.000	260	0%	141	31.9%	-	-	unknown(0)	deleterious(0.01)	-	NULL
GAS2L2	246176	genome.wustl.edu	37	17	34072237	34072237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139285.2	-1	validated	p.R760I	1.000	123	0%	106	28.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GAS2L2	246176	genome.wustl.edu	37	17	34072796	34072796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139285.2	-1	validated	p.E574K	0.000	48	0%	47	36.2%	-	-	benign(0.005)	deleterious(0.03)	neutral(0.364)	NULL
MMP28	79148	genome.wustl.edu	37	17	34105998	34105998	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032278.1	-1	reviewed	p.C91	1.000	141	0%	84	42.9%	-	-	-	-	-	superfamily_PGBD_like
MYO19	80179	genome.wustl.edu	37	17	34852154	34852154	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025109.5	-1	validated	p.L752	0.995	291	0%	150	38.7%	-	-	-	-	-	NULL
MYO19	80179	genome.wustl.edu	37	17	34867240	34867240	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025109.5	-1	validated	p.E317*	0.999	150	0%	129	42.6%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO19	80179	genome.wustl.edu	37	17	34871759	34871759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025109.5	-1	validated	p.K163N	1.000	192	0%	99	26.3%	-	-	benign(0.253)	tolerated(0.51)	neutral(0.035)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
PIGW	284098	genome.wustl.edu	37	17	34893631	34893631	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178517.3	+1	validated	p.E227	1.000	309	0%	202	13.9%	-	-	-	-	-	NULL
GGNBP2	79893	genome.wustl.edu	37	17	34935677	34935677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024835.2	+1	validated	p.R283Q	0.998	204	0%	114	30.7%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
AATF	26574	genome.wustl.edu	37	17	35378312	35378312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012138.3	+1	reviewed	p.R516W	1.000	237	0%	90	30%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRAUB
ACACA	31	genome.wustl.edu	37	17	35453960	35453960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.W2288G	1.000	482	0%	244	32%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ACACA	31	genome.wustl.edu	37	17	35518820	35518820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.L1742I	1.000	254	0%	159	38.4%	-	-	benign(0.049)	deleterious(0.03)	neutral(0.367)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
ACACA	31	genome.wustl.edu	37	17	35597463	35597463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.R1017Q	0.997	138	0%	60	36.7%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_ACC_central
ACACA	31	genome.wustl.edu	37	17	35614746	35614746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.R569C	1.000	350	0%	198	30.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Biotin_carb_C,superfamily_Rudmnt_hyb_motif
TADA2A	6871	genome.wustl.edu	37	17	35787058	35787058	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001488.3	+1	reviewed	p.R48*	0.998	337	0%	163	28.8%	-	-	-	-	-	NULL
TADA2A	6871	genome.wustl.edu	37	17	35797849	35797849	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001488.3	+1	reviewed	p.F68C	1.000	580	0%	301	42.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Homeodomain-like
TADA2A	6871	genome.wustl.edu	37	17	35802742	35802742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001488.3	+1	reviewed	p.D174Y	1.000	336	0%	146	30.8%	-	-	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	NULL
ENSG00000174093	0	genome.wustl.edu	37	17	36352450	36352450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312412	-1	known	p.R446Q	1.000	203	0%	89	18%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
ENSG00000174093	0	genome.wustl.edu	37	17	36365127	36365127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312412	-1	known	p.M156I	1.000	436	0%	165	16.4%	-	-	possibly_damaging(0.61)	deleterious(0)	deleterious(0.656)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
SOCS7	30837	genome.wustl.edu	37	17	36508867	36508867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014598.1	+1	validated	p.S247N	1.000	12	0%	11	36.4%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SRCIN1	80725	genome.wustl.edu	37	17	36709077	36709077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025248.2	-1	validated	p.S739L	1.000	127	0%	81	27.2%	-	-	probably_damaging(0.99)	tolerated(0.64)	neutral(0.445)	NULL
PIP4K2B	8396	genome.wustl.edu	37	17	36955606	36955606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003559.4	-1	reviewed	p.K24N	1.000	88	0%	107	25.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CWC25	54883	genome.wustl.edu	37	17	36958363	36958363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017748.3	-1	provisional	p.K420N	1.000	191	0%	123	26%	-	-	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	NULL
CWC25	54883	genome.wustl.edu	37	17	36981424	36981424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017748.3	-1	provisional	p.D5Y	1.000	336	0%	168	44%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBXO47	494188	genome.wustl.edu	37	17	37118189	37118189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008777.2	-1	validated	p.N98S	1.000	512	0%	258	12.8%	-	-	benign(0.013)	tolerated(0.81)	neutral(0.001)	NULL
ARL5C	390790	genome.wustl.edu	37	17	37321357	37321357	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143968.1	-1	provisional	p.G28*	0.916	239	0.4%	134	44%	-	-	-	-	-	HMMPfam_Arf,superfamily_SSF52540
CACNB1	782	genome.wustl.edu	37	17	37351184	37351184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000723.3	-1	reviewed	p.D42Y	0.999	152	0%	79	35.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RPL19	6143	genome.wustl.edu	37	17	37358641	37358641	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000981.3	+1	reviewed	p.R62*	1.000	64	0%	45	13.3%	-	-	-	-	-	HMMPfam_Ribosomal_L19e,superfamily_Ribosomal protein L19 (L19e)
CDK12	51755	genome.wustl.edu	37	17	37627509	37627509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016507.2	+1	validated	p.S475Y	1.000	246	0%	95	26.3%	-	-	unknown(0)	deleterious(0.03)	-	NULL
NEUROD2	4761	genome.wustl.edu	37	17	37762587	37762587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006160.3	-1	reviewed	p.E89G	1.000	73	0%	63	49.2%	-	-	benign(0.35)	tolerated(0.12)	neutral(0.371)	NULL
STARD3	10948	genome.wustl.edu	37	17	37818510	37818510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006804.3	+1	reviewed	p.E382D	1.000	132	0%	85	52.9%	-	-	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
PNMT	5409	genome.wustl.edu	37	17	37826452	37826452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002686.3	+1	reviewed	p.S220L	0.997	27	0%	35	40%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335
ERBB2	2064	genome.wustl.edu	37	17	37880207	37880207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004448.2	+1	reviewed	p.A751T	1.000	353	0%	162	28.4%	-	-	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
ERBB2	2064	genome.wustl.edu	37	17	37881400	37881400	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004448.2	+1	reviewed	p.F864	0.548	186	0%	108	42.6%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PSMD3	5709	genome.wustl.edu	37	17	38146409	38146409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002809.2	+1	reviewed	p.R314C	1.000	105	0%	75	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00753,superfamily_TPR-like
MSL1	339287	genome.wustl.edu	37	17	38285834	38285834	+	Silent	SNP	G	G	A	rs141878833	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012241.1	+1	validated	p.P180	0.995	33	0%	15	26.7%	-	-	-	-	-	NULL
MSL1	339287	genome.wustl.edu	37	17	38289317	38289317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012241.1	+1	validated	p.S241L	0.984	383	0%	181	30.9%	-	-	possibly_damaging(0.85)	tolerated(0.78)	neutral(0.328)	NULL
CASC3	22794	genome.wustl.edu	37	17	38319915	38319915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007359.4	+1	reviewed	p.R323C	0.995	401	0%	305	31.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDC6	990	genome.wustl.edu	37	17	38457265	38457265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001254.3	+1	reviewed	p.E479*	1.000	212	0%	96	31.2%	-	-	-	-	-	HMMPfam_Cdc6_C,superfamily_SSF46785
TOP2A	7153	genome.wustl.edu	37	17	38554818	38554818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001067.2	-1	reviewed	p.E1177K	1.000	212	0%	128	39.1%	-	-	benign(0.024)	tolerated(0.35)	neutral(0.022)	HMMPfam_DNA_topoisoIV,superfamily_Type II DNA topoisomerase
TNS4	84951	genome.wustl.edu	37	17	38638394	38638394	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032865.5	-1	validated	p.T553	0.793	109	0%	69	34.8%	-	-	-	-	-	superfamily_SSF55550
SMARCE1	6605	genome.wustl.edu	37	17	38792252	38792252	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003079.4	-1	reviewed	p.R158*	1.000	556	0%	248	38.7%	-	-	-	-	-	NULL
KRT26	353288	genome.wustl.edu	37	17	38926062	38926062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181539.4	-1	reviewed	p.E305K	0.994	685	0.1%	365	19.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Prefoldin,HMMPfam_Filament
KRT26	353288	genome.wustl.edu	37	17	38926570	38926570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181539.4	-1	reviewed	p.D206N	0.903	271	0%	183	41.5%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_Prefoldin,HMMPfam_Filament
KRT12	3859	genome.wustl.edu	37	17	39023000	39023000	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000223.3	-1	reviewed	p.E147*	1.000	129	0%	56	42.9%	-	-	-	-	-	HMMPfam_Filament
KRT23	25984	genome.wustl.edu	37	17	39092801	39092801	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015515.3	-1	reviewed	p.G19*	0.047	48	0%	28	39.3%	-	-	-	-	-	NULL
KRTAP4-6	81871	genome.wustl.edu	37	17	39296274	39296274	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000345847	-1	known	p.E156*	0.000	191	0%	159	18.9%	-	-	-	-	-	HMMPfam_Keratin_B2
KRTAP9-8	83901	genome.wustl.edu	37	17	39394611	39394611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031963.2	+1	reviewed	p.R103I	0.400	365	0%	289	29.1%	-	-	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	HMMPfam_Keratin_B2
KRTAP9-6	100507608	genome.wustl.edu	37	17	39421752	39421752	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391355	+1	known	p.S41	0.060	271	0%	179	40.8%	-	-	-	-	-	HMMPfam_Keratin_B2
KRT34	3885	genome.wustl.edu	37	17	39535324	39535324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021013.3	-1	reviewed	p.E369D	0.919	292	0%	242	38.4%	-	-	benign(0.016)	tolerated(0.2)	neutral(0.050)	HMMPfam_Filament
KRT32	3882	genome.wustl.edu	37	17	39622408	39622408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002278.3	-1	reviewed	p.E163D	0.995	298	0%	200	38.5%	-	-	benign(0.048)	tolerated(0.4)	neutral(0.019)	HMMPfam_Filament
KRT35	3886	genome.wustl.edu	37	17	39635105	39635105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002280.4	-1	reviewed	p.E285G	1.000	123	0%	75	33.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Prefoldin,HMMPfam_Filament
KRT15	3866	genome.wustl.edu	37	17	39670283	39670283	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002275.3	-1	reviewed	p.E455*	0.993	189	0%	134	28.4%	-	-	-	-	-	NULL
GAST	2520	genome.wustl.edu	37	17	39872118	39872118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000805.3	+1	reviewed	p.E100D	0.003	110	0.9%	86	37.2%	-	-	benign(0.105)	tolerated(0.89)	neutral(0.008)	HMMPfam_Gastrin,HMMSmart_GASTRIN
FKBP10	60681	genome.wustl.edu	37	17	39977251	39977251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021939.3	+1	reviewed	p.E437K	0.897	48	0%	21	42.9%	-	-	benign(0.382)	tolerated(1)	neutral(0.122)	HMMPfam_FKBP_C,superfamily_SSF54534
ACLY	47	genome.wustl.edu	37	17	40058048	40058048	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001096.2	-1	reviewed	p.R362*	1.000	161	0%	107	39.3%	-	-	-	-	-	superfamily_CoA_ligase
KCNH4	23415	genome.wustl.edu	37	17	40327755	40327755	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012285.2	-1	reviewed	e6-1	1.000	313	0%	115	14.8%	-	-	-	-	-	-
KCNH4	23415	genome.wustl.edu	37	17	40330471	40330471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012285.2	-1	reviewed	p.D112G	1.000	101	0%	49	36.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PAC,HMMPfam_PAS,superfamily_SSF55785
STAT3	6774	genome.wustl.edu	37	17	40498635	40498635	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139276.2	-1	reviewed	p.S75	0.991	243	0%	124	26.6%	-	-	-	-	-	HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain
EZH1	2145	genome.wustl.edu	37	17	40874816	40874816	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001991.3	-1	validated	p.E162*	1.000	500	0%	324	32.1%	-	-	-	-	-	HMMSmart_SM00717
WNK4	65266	genome.wustl.edu	37	17	40948574	40948574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032387.4	+1	reviewed	p.F1236S	1.000	188	0%	102	39.2%	-	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
AOC2	314	genome.wustl.edu	37	17	41002212	41002212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_009590.2	+1	reviewed	p.F706L	1.000	320	0%	188	27.7%	-	-	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
AARSD1	80755	genome.wustl.edu	37	17	41122352	41122352	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424284	-1	known	p.R101*	0.525	294	0%	164	36.6%	-	-	benign(0.256)	deleterious(0.01)	neutral(0.432)	NULL
ETV4	2118	genome.wustl.edu	37	17	41610695	41610695	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079675.1	-1	validated	p.Q135	0.982	70	0%	33	42.4%	-	-	-	-	-	HMMPfam_ETS_PEA3_N
HDAC5	10014	genome.wustl.edu	37	17	42156172	42156172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015053.1	-1	reviewed	p.E1053K	1.000	213	0%	162	30.9%	-	-	benign(0.042)	tolerated(0.46)	neutral(0.015)	superfamily_Arginase/deacetylase
HDAC5	10014	genome.wustl.edu	37	17	42168844	42168844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015053.1	-1	reviewed	p.S395L	0.935	64	0%	26	53.8%	-	-	benign(0.202)	tolerated(0.06)	neutral(0.342)	NULL
ATXN7L3	56970	genome.wustl.edu	37	17	42272138	42272138	+	Silent	SNP	C	C	T	rs181092765	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020218.1	-1	validated	p.S252	0.514	61	0%	41	41.5%	-	-	-	-	-	NULL
UBTF	7343	genome.wustl.edu	37	17	42286768	42286768	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014233.2	-1	validated	p.A619	0.000	209	0%	164	29.3%	-	-	-	-	-	HMMSmart_SM00398,superfamily_HMG-box
UBTF	7343	genome.wustl.edu	37	17	42290609	42290609	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014233.2	-1	validated	p.F172	1.000	183	0%	133	36.8%	-	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
UBTF	7343	genome.wustl.edu	37	17	42293103	42293103	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014233.2	-1	validated	p.A131	0.840	597	0%	369	35%	-	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
SLC4A1	6521	genome.wustl.edu	37	17	42332629	42332629	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000342.3	-1	reviewed	p.I612	1.000	117	0%	46	34.8%	-	-	-	-	-	HMMPfam_HCO3_cotransp
RUNDC3A	10900	genome.wustl.edu	37	17	42392345	42392345	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144825.1	+1	validated	p.I199	0.998	199	0%	93	30.1%	-	-	-	-	-	NULL
ITGA2B	3674	genome.wustl.edu	37	17	42461928	42461928	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000419.3	-1	reviewed	p.F275	1.000	97	0%	68	38.2%	-	-	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
FZD2	2535	genome.wustl.edu	37	17	42636026	42636026	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001466.2	+1	reviewed	p.K324Q	1.000	107	0%	110	34.5%	-	-	benign(0.103)	tolerated(0.46)	neutral(0.020)	HMMPfam_Frizzled
C17orf104	284071	genome.wustl.edu	37	17	42734564	42734564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145080.2	+1	validated	p.T47A	0.013	83	0%	67	34.3%	-	-	benign(0.141)	tolerated(0.06)	neutral(0.335)	NULL
C17orf104	284071	genome.wustl.edu	37	17	42750875	42750875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409122	+1	known	p.R867W	1.000	243	0%	171	36.3%	-	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
DBF4B	80174	genome.wustl.edu	37	17	42818756	42818756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145663.1	+1	validated	p.L256I	1.000	323	0.3%	158	26.6%	-	-	possibly_damaging(0.814)	tolerated(0.44)	neutral(0.320)	NULL
DBF4B	80174	genome.wustl.edu	37	17	42824544	42824544	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145663.1	+1	validated	p.F308	0.082	159	0%	103	37.9%	-	-	-	-	-	HMMPfam_zf-DBF,HMMSmart_SM00586
ADAM11	4185	genome.wustl.edu	37	17	42848999	42848999	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002390.4	+1	reviewed	p.P143	0.000	48	0%	54	31.5%	-	-	-	-	-	HMMPfam_Pep_M12B_propep
GFAP	2670	genome.wustl.edu	37	17	42987857	42987857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376990	-1	known	p.V433M	0.000	89	0%	60	25%	-	-	-	-	-	NULL
KIF18B	146909	genome.wustl.edu	37	17	43005412	43005412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080443.1	-1	provisional	p.D756G	0.622	77	0%	54	48.1%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
FMNL1	752	genome.wustl.edu	37	17	43323043	43323043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005892.3	+1	reviewed	p.K979N	1.000	155	0%	114	13.2%	-	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
MAP3K14	9020	genome.wustl.edu	37	17	43350919	43350919	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003954.2	-1	reviewed	p.A536V	0.998	53	0%	46	17.4%	-	-	-	-	-	NULL
ARHGAP27	201176	genome.wustl.edu	37	17	43473941	43473941	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199282.2	-1	validated	p.F354	1.000	23	0%	26	53.8%	-	-	-	-	-	superfamily_GTPase activation domain GAP
PLEKHM1	9842	genome.wustl.edu	37	17	43535707	43535707	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014798.2	-1	reviewed	p.G469	0.001	175	0%	78	25.6%	-	-	-	-	-	NULL
ENSG00000131484	0	genome.wustl.edu	37	17	43580854	43580854	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000253803	+1	known	p.S49R	0.000	79	0%	66	19.7%	-	-	possibly_damaging(0.811)	deleterious(0)	deleterious(0.750)	NULL
SPPL2C	162540	genome.wustl.edu	37	17	43923654	43923654	+	Missense_Mutation	SNP	G	G	A	rs12185233	byCluster;byFrequency	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175882.2	+1	validated	p.R461H	1.000	296	0%	181	35.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
WNT3	7473	genome.wustl.edu	37	17	44846130	44846130	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030753.3	-1	reviewed	p.C208	1.000	97	0%	73	37%	-	-	-	-	-	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1
LOC644397	644397	genome.wustl.edu	37	17	45102056	45102056	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_042323.2	+1	model	NULL	0.995	422	0.2%	184	28.8%	-	-	unknown(0)	tolerated(0.34)	-	-
C17orf57	124989	genome.wustl.edu	37	17	45425281	45425281	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152347.3	+1	provisional	p.E209*	0.988	257	0%	125	30.4%	-	-	-	-	-	superfamily_EF-hand
C17orf57	124989	genome.wustl.edu	37	17	45481359	45481359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152347.3	+1	provisional	p.E711D	0.961	243	0.4%	85	35.3%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_EF-hand
NPEPPS	9520	genome.wustl.edu	37	17	45689927	45689927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006310.3	+1	reviewed	p.V733M	1.000	241	0%	92	30.4%	-	-	possibly_damaging(0.903)	tolerated(0.12)	deleterious(0.619)	NULL
KPNB1	3837	genome.wustl.edu	37	17	45757974	45757974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290158	+1	known	p.K857Q	1.000	391	0%	192	38.5%	-	-	possibly_damaging(0.91)	deleterious(0.03)	deleterious(0.727)	superfamily_ARM repeat
OSBPL7	114881	genome.wustl.edu	37	17	45896422	45896422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145798.2	-1	reviewed	p.S100L	0.989	339	0.3%	273	14.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PRR15L	79170	genome.wustl.edu	37	17	46030430	46030430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024320.2	-1	provisional	p.K57N	1.000	558	0%	323	37.2%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
NFE2L1	4779	genome.wustl.edu	37	17	46136822	46136822	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003204.2	+1	validated	p.K713T	1.000	126	0%	80	35%	-	-	possibly_damaging(0.845)	deleterious(0.01)	deleterious(0.730)	HMMSmart_SM00338
SNF8	11267	genome.wustl.edu	37	17	47022058	47022058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007241.2	-1	provisional	p.K13N	1.000	88	0%	57	43.9%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_EAP30
GIP	2695	genome.wustl.edu	37	17	47041683	47041683	+	Silent	SNP	C	C	T	rs139574667		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004123.2	-1	reviewed	p.G82	1.000	306	0%	202	34.7%	-	-	-	-	-	NULL
GNGT2	2793	genome.wustl.edu	37	17	47284724	47284724	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031498.2	-1	reviewed	p.E21*	1.000	359	0%	255	31.4%	-	-	-	-	-	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
PHB	5245	genome.wustl.edu	37	17	47486756	47486756	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002634.2	-1	reviewed	p.I110	0.973	252	0%	171	42.1%	-	-	-	-	-	HMMPfam_Band_7,HMMSmart_SM00244
LOC100131693	100131693	genome.wustl.edu	37	17	47502121	47502121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726582.1	-1	model	p.T55N	1.000	446	0.2%	243	37.4%	-	-	-	-	-	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
FAM117A	81558	genome.wustl.edu	37	17	47810066	47810066	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030802.3	-1	validated	p.S71	0.233	164	0%	123	43.9%	-	-	-	-	-	NULL
DLX3	1747	genome.wustl.edu	37	17	48069190	48069190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005220.2	-1	reviewed	p.K185N	1.000	354	0%	200	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
DLX3	1747	genome.wustl.edu	37	17	48070875	48070875	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005220.2	-1	reviewed	p.I135	1.000	99	0%	67	31.3%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
COL1A1	1277	genome.wustl.edu	37	17	48264142	48264142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000088.3	-1	reviewed	p.R1225C	1.000	114	0%	121	44.6%	-	-	unknown(0)	deleterious(0.01)	-	NULL
LOC100288444	100288444	genome.wustl.edu	37	17	48431347	48431347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343567.1	-1	model	p.D64N	0.908	24	0.000	8	0.500	-	-	-	-	-	NULL
ACSF2	80221	genome.wustl.edu	37	17	48539855	48539855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025149.4	+1	validated	p.A234V	1.000	98	0%	61	39.3%	-	-	possibly_damaging(0.44)	tolerated(0.09)	neutral(0.440)	HMMPfam_AMP-binding,superfamily_SSF56801
CACNA1G	8913	genome.wustl.edu	37	17	48681624	48681624	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018896.3	+1	validated	p.F1426	0.997	500	0%	279	36.2%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1G	8913	genome.wustl.edu	37	17	48684317	48684317	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018896.3	+1	validated	p.Y1493	0.472	584	0%	281	37.7%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SPAG9	9043	genome.wustl.edu	37	17	49079095	49079095	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130528.2	-1	reviewed	p.R530*	1.000	327	0%	198	29.3%	-	-	-	-	-	NULL
MMD	23531	genome.wustl.edu	37	17	53478886	53478886	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012329.2	-1	reviewed	p.E154*	1.000	343	0%	119	42%	-	-	-	-	-	HMMPfam_HlyIII
ANKFN1	162282	genome.wustl.edu	37	17	54534657	54534657	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153228.2	+1	validated	p.N452	1.000	167	0%	90	37.8%	-	-	-	-	-	NULL
ANKFN1	162282	genome.wustl.edu	37	17	54543716	54543716	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153228.2	+1	validated	e14-1	1.000	251	0%	156	29.5%	-	-	-	-	-	-
DGKE	8526	genome.wustl.edu	37	17	54940083	54940083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003647.2	+1	reviewed	p.F545L	1.000	194	0%	99	34.3%	-	-	benign(0.011)	tolerated(1)	neutral(0.001)	NULL
COIL	8161	genome.wustl.edu	37	17	55027491	55027491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004645.2	-1	reviewed	p.G371D	0.072	263	0.4%	112	20.5%	-	-	benign(0)	tolerated(1)	-	NULL
AKAP1	8165	genome.wustl.edu	37	17	55187508	55187508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003488.3	+1	reviewed	p.E613K	1.000	122	0%	92	39.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
AKAP1	8165	genome.wustl.edu	37	17	55189873	55189873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003488.3	+1	reviewed	p.K666R	1.000	171	0%	111	36.9%	-	-	possibly_damaging(0.461)	deleterious(0.04)	deleterious(0.500)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
AKAP1	8165	genome.wustl.edu	37	17	55189950	55189950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003488.3	+1	reviewed	p.A692T	0.999	157	0%	113	45.1%	-	-	benign(0.012)	tolerated(0.4)	neutral(0.017)	NULL
SRSF1	6426	genome.wustl.edu	37	17	56083261	56083261	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006924.4	-1	reviewed	p.D151	1.000	251	0%	106	34%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DYNLL2	140735	genome.wustl.edu	37	17	56166575	56166575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080677.2	+1	validated	p.E69K	1.000	381	0%	216	36.1%	-	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_Dynein_light,superfamily_DLC,PatternScan_DYNEIN_LIGHT_1
OR4D1	26689	genome.wustl.edu	37	17	56232586	56232586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012374.1	+1	provisional	p.Q24H	0.001	176	0%	101	42.6%	-	-	benign(0.02)	deleterious(0.01)	neutral(0.407)	superfamily_SSF81321
BZRAP1	9256	genome.wustl.edu	37	17	56383751	56383751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.T1726A	0.001	158	0%	120	33.3%	-	-	benign(0.005)	tolerated(0.31)	neutral(0.027)	NULL
BZRAP1	9256	genome.wustl.edu	37	17	56386510	56386510	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.R1375*	0.001	76	0%	69	34.8%	-	-	-	-	-	NULL
SEPT4	5414	genome.wustl.edu	37	17	56598470	56598470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004574.2	-1	reviewed	p.R389H	1.000	201	0%	134	36.6%	-	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_Septin
ENSG00000227324	0	genome.wustl.edu	37	17	56738339	56738339	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453538	-1	known	p.E208*	1.000	443	0%	263	27.4%	-	-	-	-	-	HMMPfam_TAP42
TRIM37	4591	genome.wustl.edu	37	17	57148209	57148209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005207.2	-1	reviewed	p.T262A	1.000	177	0%	83	34.9%	-	-	benign(0.073)	tolerated(0.23)	neutral(0.046)	NULL
TRIM37	4591	genome.wustl.edu	37	17	57161421	57161421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005207.2	-1	reviewed	p.V104A	0.999	390	0%	190	41.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_RING/U-box
GDPD1	284161	genome.wustl.edu	37	17	57350186	57350186	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182569.3	+1	validated	p.R271*	0.929	526	0%	297	32%	-	-	-	-	-	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
CLTC	1213	genome.wustl.edu	37	17	57738814	57738814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004859.3	+1	reviewed	p.R393H	1.000	204	0%	110	30.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
CLTC	1213	genome.wustl.edu	37	17	57754428	57754428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004859.3	+1	reviewed	p.R892I	1.000	226	0%	123	30.1%	-	-	benign(0.234)	deleterious(0.03)	neutral(0.388)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
RNFT1	51136	genome.wustl.edu	37	17	58035798	58035798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016125.3	-1	validated	p.F234I	1.000	149	0%	62	33.9%	-	-	benign(0.087)	tolerated(0.68)	neutral(0.009)	NULL
ENSG00000238283	0	genome.wustl.edu	37	17	58088004	58088004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407042	-1	known	p.G280R	1.000	338	0%	219	23.3%	-	-	-	-	-	HMMPfam_TBC
HEATR6	63897	genome.wustl.edu	37	17	58120963	58120963	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022070.4	-1	validated	p.S1169	0.017	241	0%	160	35.6%	-	-	-	-	-	NULL
HEATR6	63897	genome.wustl.edu	37	17	58148161	58148161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022070.4	-1	validated	p.Q236L	1.000	407	0%	228	13.6%	-	-	unknown(0)	tolerated(0.17)	-	NULL
USP32	84669	genome.wustl.edu	37	17	58283007	58283007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032582.3	-1	validated	p.S1017L	0.999	426	0%	223	35%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_UCH,superfamily_SSF54001
USP32	84669	genome.wustl.edu	37	17	58289423	58289423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032582.3	-1	validated	p.S714Y	1.000	410	0%	179	32.4%	-	-	benign(0.085)	tolerated(0.58)	neutral(0.011)	NULL
USP32	84669	genome.wustl.edu	37	17	58289457	58289457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032582.3	-1	validated	p.R703C	1.000	423	0%	185	34.1%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
C17orf64	124773	genome.wustl.edu	37	17	58503528	58503528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181707.2	+1	validated	p.E54*	1.000	251	0%	161	32.3%	-	-	-	-	-	NULL
TBX2	6909	genome.wustl.edu	37	17	59485435	59485435	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005994.3	+1	validated	p.F569	1.000	70	0%	60	15%	-	-	-	-	-	NULL
TBX4	9496	genome.wustl.edu	37	17	59557291	59557291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018488.2	+1	reviewed	p.G251D	1.000	132	0%	95	45.3%	-	-	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
TBX4	9496	genome.wustl.edu	37	17	59560437	59560437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018488.2	+1	reviewed	p.E400K	1.000	114	0%	74	27%	-	-	benign(0.133)	deleterious(0.05)	neutral(0.356)	NULL
INTS2	57508	genome.wustl.edu	37	17	59999170	59999170	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020748.2	-1	validated	p.E159*	1.000	99	0%	34	23.5%	-	-	-	-	-	NULL
MED13	9969	genome.wustl.edu	37	17	60060416	60060416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005121.2	-1	reviewed	p.S983Y	1.000	146	0%	66	40.9%	-	-	benign(0.229)	deleterious(0.01)	neutral(0.429)	NULL
MED13	9969	genome.wustl.edu	37	17	60062153	60062153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005121.2	-1	reviewed	p.M850I	1.000	326	0.3%	155	32.3%	-	-	benign(0.104)	tolerated(0.99)	neutral(0.008)	NULL
ENSG00000188755	0	genome.wustl.edu	37	17	60349287	60349287	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339120	-1	known	p.T87	0.998	391	0%	218	30.7%	-	-	-	-	-	superfamily_RabGAP_TBC
TLK2	11011	genome.wustl.edu	37	17	60631049	60631049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006852.3	+1	validated	p.S218F	1.000	228	0%	81	34.6%	-	-	benign(0.223)	deleterious(0.03)	neutral(0.387)	NULL
MARCH10	162333	genome.wustl.edu	37	17	60799873	60799873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100875.1	-1	validated	p.F730L	1.000	218	0%	108	38.9%	-	-	possibly_damaging(0.882)	tolerated(0.08)	deleterious(0.644)	superfamily_RING/U-box
MARCH10	162333	genome.wustl.edu	37	17	60813545	60813545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100875.1	-1	validated	p.L562I	0.000	105	0%	53	35.8%	-	-	benign(0.144)	deleterious(0)	neutral(0.457)	NULL
MARCH10	162333	genome.wustl.edu	37	17	60813617	60813617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100875.1	-1	validated	p.E538K	0.046	89	0%	44	31.8%	-	-	possibly_damaging(0.798)	deleterious(0)	deleterious(0.745)	NULL
TANC2	26115	genome.wustl.edu	37	17	61432186	61432186	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.R599*	1.000	88	1.1%	58	50%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TANC2	26115	genome.wustl.edu	37	17	61432698	61432698	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.E769D	1.000	200	0%	106	37.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
TANC2	26115	genome.wustl.edu	37	17	61466049	61466049	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.I841	0.959	550	0%	224	32.6%	-	-	-	-	-	NULL
TANC2	26115	genome.wustl.edu	37	17	61498689	61498689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.F1782L	1.000	212	0%	132	34.1%	-	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
DDX42	11325	genome.wustl.edu	37	17	61895615	61895615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007372.2	+1	reviewed	p.R892C	0.997	46	0%	21	28.6%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
FTSJ3	117246	genome.wustl.edu	37	17	61901303	61901303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017647.3	-1	reviewed	p.K388N	1.000	267	0%	152	14.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PSMC5	5705	genome.wustl.edu	37	17	61908724	61908724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002805.4	+1	reviewed	p.S303L	1.000	70	0%	61	34.4%	-	-	benign(0.011)	deleterious(0)	neutral(0.445)	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSH1	1442	genome.wustl.edu	37	17	61972495	61972495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001317.3	-1	reviewed	p.A181T	0.706	473	0%	394	38.1%	-	-	possibly_damaging(0.93)	tolerated(0.21)	neutral(0.420)	HMMPfam_Hormone_1,superfamily_4-helical cytokines
CSH1	1442	genome.wustl.edu	37	17	61972690	61972690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022640.2	-1	reviewed	p.P200L	0.006	188	0%	126	34.9%	-	-	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
CSHL1	1444	genome.wustl.edu	37	17	61988140	61988140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022579.1	-1	reviewed	p.D52G	1.000	200	0%	145	37.9%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Hormone_1,superfamily_4-helical cytokines
CD79B	974	genome.wustl.edu	37	17	62007560	62007560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039933.1	-1	reviewed	p.E103K	0.000	320	0%	256	13.7%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SCN4A	6329	genome.wustl.edu	37	17	62019319	62019319	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.F1441	1.000	139	0%	93	34.4%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN4A	6329	genome.wustl.edu	37	17	62026016	62026016	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.F1033	0.929	98	0%	69	14.5%	-	-	-	-	-	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels
SCN4A	6329	genome.wustl.edu	37	17	62036624	62036624	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	e12+1	1.000	112	0%	98	26.5%	-	-	-	-	-	-
SCN4A	6329	genome.wustl.edu	37	17	62036709	62036709	+	Silent	SNP	G	G	A	rs181494727	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.F645	0.995	203	0%	136	19.9%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TEX2	55852	genome.wustl.edu	37	17	62254767	62254767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018469.3	-1	validated	p.R837I	1.000	334	0%	177	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2404
TEX2	55852	genome.wustl.edu	37	17	62271059	62271059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018469.3	-1	validated	p.R679I	0.821	263	0%	172	34.3%	-	-	benign(0.003)	tolerated(0.13)	neutral(0.253)	HMMSmart_PH
CEP95	90799	genome.wustl.edu	37	17	62530774	62530774	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138363.1	+1	provisional	p.I663	0.074	409	0%	202	33.2%	-	-	-	-	-	NULL
SMURF2	64750	genome.wustl.edu	37	17	62589640	62589640	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022739.3	-1	validated	p.K84	1.000	182	0.5%	113	37.2%	-	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
GNA13	10672	genome.wustl.edu	37	17	63049662	63049662	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006572.4	-1	validated	p.S156	0.968	117	0%	76	31.6%	-	-	-	-	-	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
RGS9	8787	genome.wustl.edu	37	17	63159173	63159173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003835.3	+1	reviewed	p.D156N	1.000	159	0%	80	33.8%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
CEP112	201134	genome.wustl.edu	37	17	63637150	63637150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145036.3	-1	validated	p.L911V	1.000	675	0.1%	419	32.7%	-	-	benign(0.014)	tolerated(0.11)	neutral(0.272)	NULL
PRKCA	5578	genome.wustl.edu	37	17	64731716	64731716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002737.2	+1	reviewed	p.R389Q	1.000	242	0%	139	25.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HELZ	9931	genome.wustl.edu	37	17	65156376	65156376	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014877.3	-1	validated	e14+1	1.000	208	0%	82	29.3%	-	-	-	-	-	-
NOL11	25926	genome.wustl.edu	37	17	65735673	65735673	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015462.3	+1	provisional	p.S628	0.951	505	0%	260	35.4%	-	-	-	-	-	NULL
BPTF	2186	genome.wustl.edu	37	17	65909054	65909054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182641.3	+1	reviewed	p.R1685Q	0.995	191	0%	110	40.9%	-	-	possibly_damaging(0.656)	tolerated(0.17)	neutral(0.290)	NULL
SLC16A6	9120	genome.wustl.edu	37	17	66270100	66270100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004694.4	-1	validated	p.S115Y	0.253	129	0%	63	39.7%	-	-	benign(0)	tolerated(1)	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC16A6	9120	genome.wustl.edu	37	17	66274255	66274255	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004694.4	-1	validated	p.I69	0.822	159	0%	93	37.6%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
WIPI1	55062	genome.wustl.edu	37	17	66423367	66423367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017983.5	-1	validated	p.E367D	1.000	786	0%	415	21.9%	-	-	benign(0.217)	tolerated(0.51)	neutral(0.030)	NULL
WIPI1	55062	genome.wustl.edu	37	17	66449099	66449099	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017983.5	-1	validated	p.L39	1.000	284	0%	178	14%	-	-	-	-	-	superfamily_WD40 repeat-like
PRKAR1A	5573	genome.wustl.edu	37	17	66511610	66511610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002734.3	+1	reviewed	p.K24Q	1.000	171	0%	75	29.3%	-	-	benign(0.11)	tolerated(0.07)	neutral(0.328)	NULL
FAM20A	54757	genome.wustl.edu	37	17	66536067	66536067	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017565.3	-1	validated	p.F420	0.976	276	0%	152	26.3%	-	-	-	-	-	HMMPfam_DUF1193
FAM20A	54757	genome.wustl.edu	37	17	66538302	66538302	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017565.3	-1	validated	p.S311	1.000	461	0%	216	35.2%	-	-	-	-	-	HMMPfam_DUF1193
ABCA8	10351	genome.wustl.edu	37	17	66864318	66864318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007168.2	-1	reviewed	p.L1552M	1.000	238	0%	131	35.1%	-	-	probably_damaging(0.974)	tolerated(0.1)	deleterious(0.702)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66872633	66872633	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007168.2	-1	reviewed	p.T1406	0.020	248	0%	159	39%	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA9	10350	genome.wustl.edu	37	17	67041348	67041348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080283.3	-1	reviewed	p.R145I	0.808	251	0%	162	33.3%	-	-	possibly_damaging(0.671)	tolerated(0.35)	neutral(0.259)	NULL
ABCA6	23460	genome.wustl.edu	37	17	67077213	67077213	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080284.2	-1	reviewed	p.E1564*	1.000	319	0%	152	38.2%	-	-	-	-	-	NULL
ABCA6	23460	genome.wustl.edu	37	17	67083584	67083584	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080284.2	-1	reviewed	p.P1243	0.003	824	0%	511	33.7%	-	-	-	-	-	NULL
ABCA6	23460	genome.wustl.edu	37	17	67106942	67106942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080284.2	-1	reviewed	p.D758Y	1.000	411	0%	225	38.2%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67215828	67215828	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080282.3	-1	reviewed	p.E130*	0.000	153	0%	72	23.6%	-	-	-	-	-	NULL
ABCA5	23461	genome.wustl.edu	37	17	67247996	67247996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018672.3	-1	reviewed	p.R1476Q	1.000	194	0.5%	103	41.7%	-	-	probably_damaging(0.977)	tolerated(0.43)	neutral(0.432)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA5	23461	genome.wustl.edu	37	17	67251958	67251958	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018672.3	-1	reviewed	p.E1298*	1.000	99	0%	58	32.8%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP2K6	5608	genome.wustl.edu	37	17	67516457	67516457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002758.3	+1	reviewed	p.K138T	1.000	318	0%	156	42.3%	-	-	possibly_damaging(0.711)	deleterious(0)	deleterious(0.702)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KCNJ16	3773	genome.wustl.edu	37	17	68128937	68128937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018658.1	+1	reviewed	p.D237Y	0.999	97	0%	52	34.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRK,superfamily_Ig_E-set
LOC124685	124685	genome.wustl.edu	37	17	69617346	69617346	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040247.2	+1	model	NULL	1.000	100	0%	51	35.3%	-	-	-	-	-	-
CDC42EP4	23580	genome.wustl.edu	37	17	71281908	71281908	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012121.4	-1	reviewed	p.G244	0.015	22	0%	28	42.9%	-	-	-	-	-	NULL
SDK2	54549	genome.wustl.edu	37	17	71412023	71412023	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144952.1	-1	provisional	p.I765	1.000	195	0%	110	41.8%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TTYH2	94015	genome.wustl.edu	37	17	72249397	72249397	+	Silent	SNP	C	C	T	rs191608577	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032646.5	+1	reviewed	p.S479	0.081	88	0%	44	22.7%	-	-	-	-	-	NULL
DNAI2	64446	genome.wustl.edu	37	17	72305444	72305444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023036.4	+1	reviewed	p.V422I	1.000	289	0%	208	28.4%	-	-	possibly_damaging(0.688)	tolerated(0.06)	deleterious(0.569)	HMMSmart_SM00320,superfamily_WD40 repeat-like
KIF19	124602	genome.wustl.edu	37	17	72339281	72339281	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153209.3	+1	validated	p.V146	0.996	66	0%	59	11.9%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR142	350383	genome.wustl.edu	37	17	72368696	72368696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181790.1	+1	provisional	p.P449H	0.013	14	0%	13	38.5%	-	-	possibly_damaging(0.475)	deleterious(0)	deleterious(0.601)	NULL
CD300E	342510	genome.wustl.edu	37	17	72613306	72613306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181449.1	-1	provisional	p.D113E	0.002	164	0%	88	30.7%	-	-	probably_damaging(0.992)	tolerated(0.1)	deleterious(0.734)	HMMSmart_SM00409,superfamily_Immunoglobulin
OTOP2	92736	genome.wustl.edu	37	17	72923893	72923893	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178160.2	+1	validated	p.Q215*	0.004	228	0%	159	35.2%	-	-	-	-	-	NULL
KCTD2	23510	genome.wustl.edu	37	17	73058266	73058266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015353.1	+1	validated	p.F230V	1.000	244	0%	127	11.8%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SUMO2	6613	genome.wustl.edu	37	17	73177159	73177159	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006937.3	-1	reviewed	p.E49A	1.000	314	0%	143	38.5%	-	-	benign(0.038)	tolerated(0.09)	neutral(0.298)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
GGA3	23163	genome.wustl.edu	37	17	73238545	73238545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138619.2	-1	reviewed	p.R207W	0.952	328	0%	241	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GAT,superfamily_GAT-like domain
GRB2	2885	genome.wustl.edu	37	17	73322040	73322040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002086.4	-1	reviewed	p.D80N	1.000	195	0%	107	13.1%	-	-	benign(0.095)	tolerated(0.48)	neutral(0.018)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
KIAA0195	9772	genome.wustl.edu	37	17	73487780	73487780	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014738.4	+1	validated	p.E465	0.652	94	0%	55	52.7%	-	-	-	-	-	NULL
CASKIN2	57513	genome.wustl.edu	37	17	73503190	73503190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020753.3	-1	validated	p.A89T	1.000	29	0%	25	52%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LLGL2	3993	genome.wustl.edu	37	17	73555445	73555445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031803.1	+1	reviewed	p.R162C	0.531	82	0%	73	41.1%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_WD40 repeat-like
FBF1	85302	genome.wustl.edu	37	17	73916414	73916414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080542.1	-1	provisional	p.A576T	0.000	80	0%	28	32.1%	-	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
ACOX1	51	genome.wustl.edu	37	17	73945836	73945836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004035.6	-1	reviewed	p.E481K	0.005	207	0.5%	155	18.1%	-	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_ACOX,superfamily_AcylCoADH_C_like
ENSG00000251043	0	genome.wustl.edu	37	17	73970677	73970677	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505288	-1	known	NULL	0.000	290	0%	152	44.1%	-	-	-	-	-	-
EVPL	2125	genome.wustl.edu	37	17	74005393	74005393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001988.2	-1	validated	p.R1298H	1.000	58	0%	50	42%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Prefoldin
SRP68	6730	genome.wustl.edu	37	17	74039941	74039941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014230.2	-1	reviewed	p.S498Y	0.228	244	0%	138	35.5%	-	-	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	superfamily_TPR-like
EXOC7	23265	genome.wustl.edu	37	17	74085343	74085343	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422667	-1	known	p.R234C	0.671	255	0%	122	17.2%	-	-	-	-	-	HMMPfam_Exo70
FOXJ1	2302	genome.wustl.edu	37	17	74134157	74134157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001454.3	-1	reviewed	p.K181N	0.912	59	0%	28	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
QRICH2	84074	genome.wustl.edu	37	17	74275493	74275493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032134.1	-1	provisional	p.F1423L	1.000	131	0%	75	33.3%	-	-	possibly_damaging(0.609)	tolerated(0.07)	deleterious(0.530)	NULL
UBE2O	63893	genome.wustl.edu	37	17	74395595	74395595	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022066.3	-1	validated	p.K521	1.000	538	0%	301	11.3%	-	-	-	-	-	NULL
UBE2O	63893	genome.wustl.edu	37	17	74396366	74396366	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022066.3	-1	validated	p.L339	0.998	107	0%	66	16.7%	-	-	-	-	-	NULL
ST6GALNAC2	10610	genome.wustl.edu	37	17	74574855	74574855	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006456.2	-1	validated	p.N57H	0.000	405	0%	181	42%	-	-	possibly_damaging(0.513)	tolerated(0.6)	neutral(0.177)	NULL
ST6GALNAC1	55808	genome.wustl.edu	37	17	74625115	74625115	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018414.3	-1	validated	p.F270	0.192	169	0%	103	19.4%	-	-	-	-	-	NULL
SEPT9	10801	genome.wustl.edu	37	17	75494650	75494650	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113491.1	+1	reviewed	p.F557	0.994	56	0%	28	28.6%	-	-	-	-	-	HMMPfam_Septin
ENSG00000204283	0	genome.wustl.edu	37	17	75878208	75878208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374983	-1	known	p.D89Y	0.026	1206	0%	876	36%	-	-	benign(0.238)	-	-	NULL
C17orf99	100141515	genome.wustl.edu	37	17	76162050	76162050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000340363	+1	known	p.R241C	0.001	148	0%	58	34.5%	-	-	probably_damaging(0.997)	-	-	NULL
TK1	7083	genome.wustl.edu	37	17	76170933	76170933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003258.4	-1	validated	p.E204D	1.000	116	0%	85	16.5%	-	-	benign(0.152)	tolerated(0.35)	neutral(0.034)	NULL
PGS1	9489	genome.wustl.edu	37	17	76399860	76399860	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024419.3	+1	provisional	p.I364	0.010	132	0%	96	34.4%	-	-	-	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76422542	76422542	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.I4327S	0.999	54	0%	41	46.3%	-	-	possibly_damaging(0.813)	tolerated(0.09)	deleterious(0.603)	HMMPfam_Dynein_heavy
DNAH17	8632	genome.wustl.edu	37	17	76440755	76440755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.N3806S	1.000	102	0%	85	35.3%	-	-	benign(0.009)	tolerated(0.12)	neutral(0.261)	HMMPfam_Dynein_heavy
DNAH17	8632	genome.wustl.edu	37	17	76447686	76447686	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.Y3519*	0.999	771	0%	399	36.3%	-	-	-	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76481033	76481033	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.D2508	0.999	173	0%	102	43.1%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CYTH1	9267	genome.wustl.edu	37	17	76696474	76696474	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004762.2	-1	reviewed	p.R163	1.000	145	0%	81	30.9%	-	-	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
USP36	57602	genome.wustl.edu	37	17	76803466	76803466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025090.3	-1	validated	p.P554S	0.000	363	0%	192	34.4%	-	-	unknown(0)	tolerated(0.23)	-	NULL
USP36	57602	genome.wustl.edu	37	17	76823364	76823364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025090.3	-1	validated	p.D218N	1.000	73	0%	33	33.3%	-	-	possibly_damaging(0.818)	tolerated(0.08)	deleterious(0.609)	HMMPfam_UCH,superfamily_SSF54001
USP36	57602	genome.wustl.edu	37	17	76825010	76825010	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025090.3	-1	validated	p.I185	1.000	179	0%	55	49.1%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
TIMP2	7077	genome.wustl.edu	37	17	76853654	76853654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003255.4	-1	reviewed	p.T139A	0.997	109	0%	89	39.3%	-	-	benign(0.304)	tolerated(0.63)	neutral(0.098)	HMMPfam_TIMP,HMMSmart_NTR,superfamily_TIMP_like
C1QTNF1	114897	genome.wustl.edu	37	17	77044162	77044162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030968.2	+1	validated	p.E280K	0.993	33	0%	25	32%	-	-	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	NULL
RBFOX3	146713	genome.wustl.edu	37	17	77102736	77102736	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082575.1	-1	validated	p.F119	0.994	110	0%	73	32.9%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ENPP7	339221	genome.wustl.edu	37	17	77709132	77709132	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178543.3	+1	validated	p.I230	0.000	75	0%	54	40.7%	-	-	-	-	-	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
CCDC40	55036	genome.wustl.edu	37	17	78021185	78021185	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017950.2	+1	validated	p.F220	0.000	52	0%	39	28.2%	-	-	-	-	-	NULL
GAA	2548	genome.wustl.edu	37	17	78086494	78086494	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000152.3	+1	reviewed	p.L624	0.001	18	0%	21	28.6%	-	-	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_Glyco_hydro_cat
CARD14	79092	genome.wustl.edu	37	17	78157852	78157852	+	Missense_Mutation	SNP	G	G	A	rs149667803	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024110.2	+1	reviewed	p.E164K	0.855	18	0%	18	38.9%	-	-	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	NULL
RNF213	57674	genome.wustl.edu	37	17	78301767	78301767	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.Q1115H	0.643	248	0%	179	11.2%	-	-	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
RNF213	57674	genome.wustl.edu	37	17	78320403	78320403	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.V2756	0.001	40	0%	22	45.5%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RNF213	57674	genome.wustl.edu	37	17	78321703	78321703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.E3190K	0.047	210	0%	149	35.6%	-	-	benign(0.011)	tolerated(0.33)	neutral(0.025)	NULL
RNF213	57674	genome.wustl.edu	37	17	78360128	78360128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.R4873Q	0.993	157	0%	102	12.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
RNF213	57674	genome.wustl.edu	37	17	78360622	78360622	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.F4951	0.980	65	0%	53	37.7%	-	-	-	-	-	NULL
NPTX1	4884	genome.wustl.edu	37	17	78449479	78449479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002522.3	-1	reviewed	p.L162F	1.000	130	0%	64	32.8%	-	-	benign(0.208)	tolerated(0.26)	neutral(0.054)	NULL
AATK	9625	genome.wustl.edu	37	17	79094786	79094786	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374792	-1	known	e13-2	0.002	40	0%	27	40.7%	-	-	-	-	-	-
BAHCC1	57597	genome.wustl.edu	37	17	79414807	79414807	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080519.2	+1	inferred	p.D1248N	0.033	44	0%	29	24.1%	-	-	-	-	-	NULL
MRPL12	6182	genome.wustl.edu	37	17	79674064	79674064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000332396	+1	known	p.S157L	0.053	101	0%	63	41.3%	-	-	benign(0)	tolerated(1)	-	NULL
P4HB	5034	genome.wustl.edu	37	17	79804940	79804940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436463	-1	known	p.R198Q	0.463	267	0%	135	43%	-	-	-	-	-	NULL
PCYT2	5833	genome.wustl.edu	37	17	79867402	79867402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002861.3	-1	reviewed	p.V56M	0.999	139	0%	140	35.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
NOTUM	147111	genome.wustl.edu	37	17	79910912	79910912	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178493.5	-1	validated	p.F472	0.941	51	0%	46	47.8%	-	-	-	-	-	NULL
TEX19	400629	genome.wustl.edu	37	17	80320075	80320075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207459.2	+1	provisional	p.L17F	0.594	173	0%	89	30.3%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
FOXK2	3607	genome.wustl.edu	37	17	80525992	80525992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004514.3	+1	reviewed	p.R226Q	1.000	114	0%	63	36.5%	-	-	possibly_damaging(0.827)	tolerated(0.52)	neutral(0.323)	NULL
ZNF750	79755	genome.wustl.edu	37	17	80790213	80790213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024702.2	-1	reviewed	p.L40I	0.999	287	0%	120	40.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_ZnF_C2H2
TBCD	6904	genome.wustl.edu	37	17	80884364	80884364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005993.4	+1	reviewed	p.A823V	0.101	220	0%	133	34.6%	-	-	possibly_damaging(0.772)	tolerated(0.19)	neutral(0.336)	superfamily_ARM repeat
TBCD	6904	genome.wustl.edu	37	17	80895187	80895187	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005993.4	+1	reviewed	p.E1078*	1.000	225	0%	110	32.7%	-	-	-	-	-	superfamily_ARM repeat
USP14	9097	genome.wustl.edu	37	18	166795	166795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005151.3	+1	reviewed	p.D57E	1.000	627	0%	245	27.8%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	HMMSmart_UBQ,superfamily_SSF54236
THOC1	9984	genome.wustl.edu	37	18	214788	214788	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005131.2	-1	validated	p.C604	0.992	529	0%	366	33.9%	-	-	-	-	-	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
CLUL1	27098	genome.wustl.edu	37	18	627119	627119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014410.4	+1	validated	p.I149T	0.890	141	0%	84	13.1%	-	-	probably_damaging(0.977)	tolerated(0.06)	deleterious(0.742)	HMMPfam_Clusterin,HMMSmart_CLb
ENSG00000215726	0	genome.wustl.edu	37	18	697390	697390	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508278	+1	novel	NULL	0.000	216	0%	130	30.8%	-	-	-	-	-	-
YES1	7525	genome.wustl.edu	37	18	739756	739756	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005433.3	-1	reviewed	p.Q372	0.481	214	0%	95	11.6%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
YES1	7525	genome.wustl.edu	37	18	745805	745805	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005433.3	-1	reviewed	p.V209	1.000	452	0%	265	34.7%	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
NDC80	10403	genome.wustl.edu	37	18	2577764	2577764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006101.2	+1	validated	p.R67W	1.000	184	0%	81	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ndc80_HEC
SMCHD1	23347	genome.wustl.edu	37	18	2726497	2726497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.Q916H	1.000	62	0%	18	38.9%	-	-	possibly_damaging(0.915)	tolerated(0.12)	deleterious(0.627)	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2890578	2890578	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032048.2	+1	validated	p.F151	0.086	66	0%	29	13.8%	-	-	-	-	-	NULL
MYOM1	8736	genome.wustl.edu	37	18	3094169	3094169	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400569	-1	known	p.R1191*	1.000	259	0%	109	34.9%	-	-	possibly_damaging(0.847)	deleterious(0.04)	deleterious(0.674)	NULL
MYOM1	8736	genome.wustl.edu	37	18	3154945	3154945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.K548T	1.000	172	0%	95	37.9%	-	-	possibly_damaging(0.721)	deleterious(0.03)	deleterious(0.626)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MYOM1	8736	genome.wustl.edu	37	18	3174171	3174171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.S353L	1.000	336	0%	154	39%	-	-	benign(0.176)	tolerated(0.06)	neutral(0.339)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MYOM1	8736	genome.wustl.edu	37	18	3188781	3188781	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.R246*	0.997	543	0.2%	377	37.9%	-	-	-	-	-	NULL
MYOM1	8736	genome.wustl.edu	37	18	3215091	3215091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.T44M	0.008	62	0%	62	38.7%	-	-	possibly_damaging(0.884)	deleterious(0.01)	deleterious(0.750)	NULL
LAMA1	284217	genome.wustl.edu	37	18	6942197	6942197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005559.2	-1	validated	p.R3037C	1.000	141	0%	70	40%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1
LAMA1	284217	genome.wustl.edu	37	18	7042185	7042185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005559.2	-1	validated	p.S407F	0.998	145	0%	75	32%	-	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
LAMA1	284217	genome.wustl.edu	37	18	7050933	7050933	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005559.2	-1	validated	p.V116	0.951	116	0%	91	18.7%	-	-	-	-	-	HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like
LRRC30	339291	genome.wustl.edu	37	18	7231721	7231721	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105581.1	+1	provisional	p.S195	0.996	148	0%	104	39.4%	-	-	-	-	-	superfamily_SSF52058
PTPRM	5797	genome.wustl.edu	37	18	7774265	7774265	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.P64	0.893	339	0%	178	35.4%	-	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
PTPRM	5797	genome.wustl.edu	37	18	8069702	8069702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.R384I	0.991	199	0.5%	87	33.3%	-	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRM	5797	genome.wustl.edu	37	18	8085711	8085711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.L532V	1.000	281	0%	143	14%	-	-	benign(0.005)	tolerated(0.89)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRM	5797	genome.wustl.edu	37	18	8376129	8376129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.L1086R	1.000	48	0%	31	25.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
SOGA2	23255	genome.wustl.edu	37	18	8718560	8718560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015210.3	+1	predicted	p.R38W	1.000	306	0%	162	34%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOGA2	23255	genome.wustl.edu	37	18	8784101	8784101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015210.3	+1	predicted	p.G331W	0.171	22	0%	20	45%	-	-	possibly_damaging(0.942)	deleterious(0.03)	deleterious(0.752)	NULL
SOGA2	23255	genome.wustl.edu	37	18	8819105	8819105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015210.3	+1	predicted	p.P1002S	0.106	70	0%	49	20.4%	-	-	benign(0.122)	tolerated(0.14)	neutral(0.260)	NULL
ANKRD12	23253	genome.wustl.edu	37	18	9211713	9211713	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015208.3	+1	validated	p.R195*	0.998	344	0%	159	15.1%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9257187	9257187	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015208.3	+1	validated	p.R1308*	1.000	183	0%	104	46.2%	-	-	-	-	-	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9257427	9257427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015208.3	+1	validated	p.L1388I	0.939	130	0%	82	42.7%	-	-	benign(0.033)	deleterious(0.03)	neutral(0.366)	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9258721	9258721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015208.3	+1	validated	p.S1819Y	1.000	109	0%	72	18.1%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Ankyrin repeat
RALBP1	10928	genome.wustl.edu	37	18	9516915	9516915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006788.3	+1	validated	p.S106F	1.000	148	0%	66	39.4%	-	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
RALBP1	10928	genome.wustl.edu	37	18	9517096	9517096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006788.3	+1	validated	p.K166N	1.000	223	0%	94	38.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TXNDC2	84203	genome.wustl.edu	37	18	9888127	9888127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098529.1	+1	validated	p.E551K	0.988	64	0%	33	27.3%	-	-	benign(0.344)	tolerated(0.09)	neutral(0.405)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
VAPA	9218	genome.wustl.edu	37	18	9936135	9936135	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003574.5	+1	reviewed	p.P87	0.961	343	0%	174	42%	-	-	-	-	-	HMMPfam_Motile_Sperm,superfamily_PapD-like
VAPA	9218	genome.wustl.edu	37	18	9937059	9937059	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003574.5	+1	reviewed	p.K138T	1.000	211	0%	163	38.7%	-	-	benign(0.03)	tolerated(0.09)	neutral(0.298)	NULL
VAPA	9218	genome.wustl.edu	37	18	9950516	9950516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003574.5	+1	reviewed	p.R226I	1.000	270	0%	112	40.2%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PIEZO2	63895	genome.wustl.edu	37	18	10677844	10677844	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503781	-1	known	p.I442fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ENSG00000175388	0	genome.wustl.edu	37	18	10760977	10760977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383408	-1	known	p.L391I	1.000	159	0%	90	34.4%	-	-	probably_damaging(0.981)	tolerated(0.1)	deleterious(0.712)	NULL
ENSG00000175388	0	genome.wustl.edu	37	18	10763064	10763064	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383408	-1	known	p.S256	1.000	186	0%	101	24.8%	-	-	-	-	-	NULL
ENSG00000175388	0	genome.wustl.edu	37	18	10787102	10787102	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383408	-1	known	p.F13L	1.000	349	0%	190	25.8%	-	-	benign(0)	tolerated(1)	-	NULL
LOC729602	729602	genome.wustl.edu	37	18	11621157	11621157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344140.1	-1	model	p.R194K	0.003	179	0%	129	18.6%	-	-	-	-	-	HMMPfam_NPIP
SLC35G4	646000	genome.wustl.edu	37	18	11644429	11644429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424015	+1	known	p.L207R	0.300	222	0%	144	14.6%	-	-	-	-	-	NULL
GNAL	2774	genome.wustl.edu	37	18	11868595	11868595	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182978.2	+1	validated	p.R322*	1.000	254	0%	167	36.5%	-	-	-	-	-	HMMPfam_G-alpha,superfamily_SSF52540
SPIRE1	56907	genome.wustl.edu	37	18	12479708	12479708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128626.1	-1	validated	p.S465Y	1.000	275	0%	145	44.1%	-	-	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	NULL
SPIRE1	56907	genome.wustl.edu	37	18	12496017	12496017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128626.1	-1	validated	p.P353S	1.000	385	0%	184	14.7%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
SPIRE1	56907	genome.wustl.edu	37	18	12546713	12546713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128626.1	-1	validated	p.R188I	0.923	307	0%	171	31%	-	-	possibly_damaging(0.649)	tolerated(0.05)	deleterious(0.574)	HMMSmart_SM00750
CEP76	79959	genome.wustl.edu	37	18	12700974	12700974	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024899.2	-1	provisional	p.E68*	1.000	307	0%	217	28.1%	-	-	-	-	-	NULL
CEP76	79959	genome.wustl.edu	37	18	12701088	12701088	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024899.2	-1	provisional	p.E30*	1.000	313	0%	169	29.6%	-	-	-	-	-	NULL
CEP192	55125	genome.wustl.edu	37	18	13015396	13015396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506447	+1	known	p.L197V	0.306	287	0%	189	39.7%	-	-	benign(0.364)	tolerated(0.06)	neutral(0.439)	NULL
CEP192	55125	genome.wustl.edu	37	18	13029915	13029915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506447	+1	known	p.G435E	0.000	237	0%	126	35.7%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
C18orf1	753	genome.wustl.edu	37	18	13612729	13612729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003674.2	+1	validated	p.S9I	0.981	242	0%	117	30.8%	-	-	benign(0.013)	tolerated(0.06)	neutral(0.323)	NULL
FAM210A	125228	genome.wustl.edu	37	18	13681918	13681918	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098801.1	-1	validated	p.K53	0.000	387	0%	258	12%	-	-	-	-	-	NULL
LOC729774	729774	genome.wustl.edu	37	18	14361677	14361677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001131264.2	-1	model	p.A101V	0.010	68	0%	44	29.5%	-	-	-	-	-	NULL
LOC646359	646359	genome.wustl.edu	37	18	14377850	14377850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929288.3	-1	model	p.E305*	0.282	57	0%	27	29.6%	-	-	-	-	-	NULL
POTEC	388468	genome.wustl.edu	37	18	14511988	14511988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137671.1	-1	validated	p.S513Y	0.856	433	0%	232	39.2%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ROCK1	6093	genome.wustl.edu	37	18	18547870	18547870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005406.2	-1	reviewed	p.R1012Q	1.000	343	0%	169	36.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Rho_Binding
ROCK1	6093	genome.wustl.edu	37	18	18603609	18603609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005406.2	-1	reviewed	p.R415I	1.000	182	0%	78	34.6%	-	-	benign(0.01)	tolerated(0.21)	neutral(0.044)	NULL
ROCK1	6093	genome.wustl.edu	37	18	18629794	18629794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005406.2	-1	reviewed	p.D75N	1.000	529	0%	191	39.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
ROCK1	6093	genome.wustl.edu	37	18	18629808	18629808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005406.2	-1	reviewed	p.R70Q	1.000	470	0%	172	33.7%	-	-	possibly_damaging(0.76)	tolerated(0.4)	neutral(0.297)	superfamily_Kinase_like
GREB1L	80000	genome.wustl.edu	37	18	19096578	19096578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142966.1	+1	provisional	p.F1712V	1.000	255	0%	157	38.2%	-	-	probably_damaging(0.995)	tolerated(0.57)	neutral(0.464)	NULL
ESCO1	114799	genome.wustl.edu	37	18	19154243	19154243	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052911.2	-1	validated	p.E188*	0.998	290	0%	176	36.9%	-	-	-	-	-	NULL
ABHD3	171586	genome.wustl.edu	37	18	19231713	19231713	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138340.4	-1	reviewed	p.E357*	1.000	128	0%	79	43%	-	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
CTAGE1	64693	genome.wustl.edu	37	18	19996547	19996547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172241.2	-1	validated	p.E410*	0.993	233	0%	102	39.2%	-	-	-	-	-	NULL
CTAGE1	64693	genome.wustl.edu	37	18	19996811	19996811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172241.2	-1	validated	p.E322K	0.268	202	0%	70	11.4%	-	-	benign(0.372)	tolerated(0.06)	neutral(0.441)	NULL
CTAGE1	64693	genome.wustl.edu	37	18	19996877	19996877	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172241.2	-1	validated	p.E300*	0.832	295	0%	122	31.1%	-	-	-	-	-	NULL
RBBP8	5932	genome.wustl.edu	37	18	20516899	20516899	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002894.2	+1	reviewed	p.E29*	1.000	382	0%	183	37.2%	-	-	-	-	-	HMMPfam_CtIP_N
RIOK3	8780	genome.wustl.edu	37	18	21046199	21046199	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003831.3	+1	reviewed	p.R216*	1.000	185	0%	89	42.7%	-	-	-	-	-	NULL
NPC1	4864	genome.wustl.edu	37	18	21116674	21116674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000271.4	-1	reviewed	p.G1070S	0.990	222	0%	186	37.6%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Patched,superfamily_SSF82866
LAMA3	3909	genome.wustl.edu	37	18	21422439	21422439	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198129.1	+1	reviewed	p.P1139	0.000	113	0%	99	36.4%	-	-	-	-	-	NULL
HRH4	59340	genome.wustl.edu	37	18	22056854	22056854	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021624.3	+1	reviewed	p.G167	0.868	612	0%	411	31.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF521	25925	genome.wustl.edu	37	18	22804419	22804419	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015461.2	-1	validated	p.N1155H	1.000	250	0%	204	39.2%	-	-	benign(0.396)	tolerated(0.07)	neutral(0.446)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KCTD1	284252	genome.wustl.edu	37	18	24039732	24039732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142730.1	-1	validated	p.T764M	0.997	152	0%	109	38.5%	-	-	benign(0.008)	tolerated(0.47)	neutral(0.011)	NULL
KCTD1	284252	genome.wustl.edu	37	18	24128045	24128045	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142730.1	-1	validated	p.G152	0.987	8	0.000	8	0.750	-	-	-	-	-	NULL
AQP4	361	genome.wustl.edu	37	18	24436259	24436259	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001650.4	-1	reviewed	p.P296	0.818	659	0%	397	33.2%	-	-	-	-	-	NULL
DSC2	1824	genome.wustl.edu	37	18	28669484	28669484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024422.3	-1	reviewed	p.R183L	0.000	249	0%	146	37%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC2	1824	genome.wustl.edu	37	18	28671100	28671100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024422.3	-1	reviewed	p.K122T	0.058	340	0%	175	36%	-	-	benign(0.024)	tolerated(0.22)	neutral(0.043)	superfamily_Cadherin-like
DSC1	1823	genome.wustl.edu	37	18	28714584	28714584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024421.2	-1	reviewed	p.F609L	0.018	322	0%	197	13.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC1	1823	genome.wustl.edu	37	18	28725702	28725702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024421.2	-1	reviewed	p.E271K	1.000	545	0%	266	41.7%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28914121	28914121	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001942.2	+1	reviewed	p.E321*	1.000	121	0%	72	18.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28914139	28914139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001942.2	+1	reviewed	p.N327H	1.000	104	0%	50	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28918325	28918325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001942.2	+1	reviewed	p.R438I	0.128	196	0%	62	29%	-	-	benign(0.019)	deleterious(0.04)	neutral(0.350)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG4	147409	genome.wustl.edu	37	18	28979442	28979442	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134453.1	+1	reviewed	p.N405H	0.995	255	0%	152	42.8%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Cadherin,superfamily_Cadherin
DSG4	147409	genome.wustl.edu	37	18	28992970	28992970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134453.1	+1	reviewed	p.E864D	0.999	280	0%	178	33.7%	-	-	benign(0.292)	tolerated(0.38)	neutral(0.107)	NULL
DSG2	1829	genome.wustl.edu	37	18	29125708	29125708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001943.3	+1	reviewed	p.D787Y	0.852	122	0%	60	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DSG2	1829	genome.wustl.edu	37	18	29126691	29126691	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001943.3	+1	reviewed	p.Q1114	0.241	74	0%	38	26.3%	-	-	-	-	-	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29410896	29410896	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014939.3	-1	validated	p.K1377T	1.000	260	0%	165	39.4%	-	-	benign(0.055)	tolerated(0.44)	neutral(0.016)	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29432414	29432414	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014939.3	-1	validated	p.E1186*	1.000	492	0%	262	13%	-	-	-	-	-	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29489639	29489639	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014939.3	-1	validated	p.E286*	1.000	263	0%	118	11%	-	-	-	-	-	NULL
C18orf34	374864	genome.wustl.edu	37	18	30969587	30969587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105528.1	-1	validated	p.A42D	0.002	200	0%	86	34.9%	-	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
C18orf34	374864	genome.wustl.edu	37	18	30992048	30992048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105528.1	-1	validated	p.T2N	0.976	205	0%	99	28.3%	-	-	possibly_damaging(0.5)	tolerated(0.11)	neutral(0.439)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31319541	31319541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030632.1	+1	provisional	p.T725A	0.999	273	0%	150	33.3%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31323626	31323626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030632.1	+1	provisional	p.T1272A	1.000	187	0%	84	14.3%	-	-	benign(0.19)	deleterious(0.02)	neutral(0.401)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31325931	31325931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030632.1	+1	provisional	p.P2040L	0.985	33	0%	17	41.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NOL4	8715	genome.wustl.edu	37	18	31599388	31599388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003787.3	-1	validated	p.S317L	0.998	524	0%	290	41.4%	-	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
DTNA	1837	genome.wustl.edu	37	18	32345936	32345936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001390.4	+1	reviewed	p.L27M	1.000	209	0%	122	23.8%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_efhand_1,superfamily_EF-hand
DTNA	1837	genome.wustl.edu	37	18	32455329	32455329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001390.4	+1	reviewed	p.V597L	1.000	155	0%	84	23.8%	-	-	benign(0.333)	tolerated(0.06)	neutral(0.427)	NULL
MAPRE2	10982	genome.wustl.edu	37	18	32712070	32712070	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014268.2	+1	reviewed	p.I275	0.992	271	0%	150	10.7%	-	-	-	-	-	HMMPfam_EB1
ZNF397	84307	genome.wustl.edu	37	18	32822598	32822598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135178.2	+1	reviewed	p.K55T	0.995	85	0%	65	33.8%	-	-	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_SCAN,HMMSmart_SM00431
ZNF397	84307	genome.wustl.edu	37	18	32825919	32825919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135178.2	+1	reviewed	p.R417Q	1.000	191	0%	143	12.6%	-	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF24	7572	genome.wustl.edu	37	18	32917491	32917491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006965.2	-1	validated	p.R271I	1.000	284	0%	187	36.4%	-	-	possibly_damaging(0.522)	deleterious(0.01)	deleterious(0.582)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF24	7572	genome.wustl.edu	37	18	32917563	32917563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006965.2	-1	validated	p.R247Q	0.990	232	0%	183	32.8%	-	-	probably_damaging(0.973)	tolerated(0.69)	neutral(0.417)	superfamily_SSF57667
ZNF396	252884	genome.wustl.edu	37	18	32949562	32949562	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145756.2	-1	validated	p.E209*	0.008	322	0.6%	199	36.7%	-	-	-	-	-	NULL
MIR187	406963	genome.wustl.edu	37	18	33484862	33484862	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385062	-1	known	NULL	1.000	26	0%	30	46.7%	-	-	-	-	-	-
SLC39A6	25800	genome.wustl.edu	37	18	33703529	33703529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012319.3	-1	validated	p.L357F	1.000	247	0%	109	38.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Zip
MOCOS	55034	genome.wustl.edu	37	18	33783113	33783113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017947.2	+1	validated	p.A327T	1.000	356	0%	204	31.4%	-	-	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
FHOD3	80206	genome.wustl.edu	37	18	34297965	34297965	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025135.2	+1	validated	p.V727L	0.002	133	0%	89	33.7%	-	-	benign(0.178)	tolerated(0.52)	neutral(0.025)	NULL
FHOD3	80206	genome.wustl.edu	37	18	34298583	34298583	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025135.2	+1	validated	p.E933*	1.000	176	0%	105	39%	-	-	-	-	-	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
KIAA1328	57536	genome.wustl.edu	37	18	34647094	34647094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020776.1	+1	validated	p.S273F	0.743	182	0%	101	29.7%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
RIT2	6014	genome.wustl.edu	37	18	40503670	40503670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002930.2	-1	provisional	p.C98Y	1.000	106	0%	85	40%	-	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC14A1	6563	genome.wustl.edu	37	18	43314325	43314325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128588.3	+1	reviewed	p.F199C	1.000	555	0%	320	36.2%	-	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_UT
EPG5	57724	genome.wustl.edu	37	18	43469867	43469867	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020964.2	-1	validated	p.Q1616	1.000	238	0%	173	44.5%	-	-	-	-	-	NULL
ATP5A1	498	genome.wustl.edu	37	18	43666423	43666423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001937.1	-1	reviewed	p.R405H	1.000	175	0%	107	42.1%	-	-	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases
C18orf25	147339	genome.wustl.edu	37	18	43796215	43796215	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145055.3	+1	validated	p.A123	0.000	89	0%	46	50%	-	-	-	-	-	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44069073	44069073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145472.2	-1	reviewed	p.D860N	0.961	201	0%	134	28.4%	-	-	benign(0.382)	deleterious(0.04)	deleterious(0.471)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44159619	44159619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144612.6	-1	reviewed	p.N317D	1.000	330	0%	245	31%	-	-	benign(0.008)	deleterious(0.04)	neutral(0.349)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
ST8SIA5	29906	genome.wustl.edu	37	18	44260332	44260332	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013305.4	-1	reviewed	p.F268	1.000	85	0%	54	42.6%	-	-	-	-	-	HMMPfam_Glyco_transf_29
PIAS2	9063	genome.wustl.edu	37	18	44470800	44470800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004671.2	-1	validated	p.S81L	0.097	180	0%	96	11.5%	-	-	benign(0.257)	tolerated(0.18)	neutral(0.083)	NULL
PIAS2	9063	genome.wustl.edu	37	18	44497293	44497293	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004671.2	-1	validated	p.E6*	0.998	68	0%	37	32.4%	-	-	-	-	-	NULL
TCEB3B	51224	genome.wustl.edu	37	18	44559944	44559944	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016427.2	-1	reviewed	p.P564	0.050	185	0%	88	47.7%	-	-	-	-	-	HMMPfam_Elongin_A
KATNAL2	83473	genome.wustl.edu	37	18	44625657	44625657	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031303.2	+1	validated	p.L347	1.000	73	0%	76	42.1%	-	-	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
SMAD2	4087	genome.wustl.edu	37	18	45394805	45394805	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003652.2	-1	reviewed	p.R182*	0.994	342	0%	150	32.7%	-	-	-	-	-	NULL
MYO5B	4645	genome.wustl.edu	37	18	47518794	47518794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.G207E	1.000	272	0.4%	191	30.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100287130	100287130	genome.wustl.edu	37	18	47808872	47808872	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343599.1	+1	model	p.P24	0.000	50	0%	29	20.7%	-	-	-	-	-	NULL
SKA1	220134	genome.wustl.edu	37	18	47917607	47917607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039535.2	+1	validated	p.S188Y	0.991	156	0%	62	80.6%	-	-	probably_damaging(0.961)	deleterious(0.03)	deleterious(0.768)	HMMPfam_DUF1395
MRO	83876	genome.wustl.edu	37	18	48331679	48331679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127176.1	-1	reviewed	p.D106N	0.943	194	0%	124	31.5%	-	-	possibly_damaging(0.777)	deleterious(0.01)	deleterious(0.696)	superfamily_ARM repeat
ME2	4200	genome.wustl.edu	37	18	48422288	48422288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002396.4	+1	reviewed	p.R33I	1.000	328	0%	136	40.4%	-	-	probably_damaging(0.985)	tolerated(0.19)	deleterious(0.481)	superfamily_SSF53223
ME2	4200	genome.wustl.edu	37	18	48434466	48434466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002396.4	+1	reviewed	p.L48I	1.000	232	0%	102	42.2%	-	-	possibly_damaging(0.873)	deleterious(0.05)	deleterious(0.684)	superfamily_SSF53223
ME2	4200	genome.wustl.edu	37	18	48466672	48466672	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002396.4	+1	reviewed	p.Q501H	0.880	295	0%	145	35.9%	-	-	benign(0.008)	tolerated(0.47)	neutral(0.011)	HMMPfam_Malic_M,superfamily_NAD(P)-bd
ELAC1	55520	genome.wustl.edu	37	18	48513443	48513443	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018696.2	+1	validated	p.P360	0.769	120	0%	61	32.8%	-	-	-	-	-	NULL
SMAD4	4089	genome.wustl.edu	37	18	48604790	48604790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005359.5	+1	reviewed	p.E538K	1.000	156	0%	87	28.7%	-	-	benign(0.106)	tolerated(0.56)	neutral(0.014)	superfamily_SMAD/FHA domain
DCC	1630	genome.wustl.edu	37	18	50848514	50848514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.E717D	1.000	180	0%	112	43.8%	-	-	possibly_damaging(0.764)	deleterious(0.04)	deleterious(0.632)	superfamily_Fibronectin type III
DCC	1630	genome.wustl.edu	37	18	51013309	51013309	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.F1293	0.416	250	0%	132	28.8%	-	-	-	-	-	HMMPfam_Neogenin_C
LOC100133176	100133176	genome.wustl.edu	37	18	51668701	51668701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001721815.1	+1	model	p.N4K	0.396	79	0%	25	36%	-	-	-	-	-	NULL
TXNL1	9352	genome.wustl.edu	37	18	54281690	54281690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004786.2	-1	validated	p.R234C	1.000	324	0%	166	41%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1000
TXNL1	9352	genome.wustl.edu	37	18	54291656	54291656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004786.2	-1	validated	p.T78A	1.000	612	0%	352	34.9%	-	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
NARS	4677	genome.wustl.edu	37	18	55269014	55269014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004539.3	-1	validated	p.R506I	1.000	114	0%	74	43.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2,superfamily_SSF55681
MALT1	10892	genome.wustl.edu	37	18	56390363	56390363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006785.2	+1	reviewed	p.E368K	1.000	521	0%	348	14.9%	-	-	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	HMMPfam_Peptidase_C14,superfamily_Caspase-like
ZNF532	55205	genome.wustl.edu	37	18	56586400	56586400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.S294L	0.948	73	0%	54	14.8%	-	-	possibly_damaging(0.69)	deleterious(0.05)	deleterious(0.593)	NULL
CPLX4	339302	genome.wustl.edu	37	18	56964052	56964052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181654.3	-1	reviewed	p.D121Y	1.000	450	0%	242	36%	-	-	possibly_damaging(0.887)	deleterious(0.03)	deleterious(0.712)	NULL
CCBE1	147372	genome.wustl.edu	37	18	57122171	57122171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133459.3	-1	reviewed	p.S189Y	0.035	183	0%	113	38.1%	-	-	benign(0.123)	-	-	NULL
MC4R	4160	genome.wustl.edu	37	18	58038691	58038691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005912.2	-1	reviewed	p.D298N	1.000	268	0%	130	33.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CDH20	28316	genome.wustl.edu	37	18	59166618	59166618	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031891.2	+1	reviewed	p.S149*	1.000	138	0%	73	38.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
RNF152	220441	genome.wustl.edu	37	18	59483116	59483116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173557.2	-1	validated	p.S194Y	1.000	152	0%	100	28%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
PIGN	23556	genome.wustl.edu	37	18	59756030	59756030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012327.5	-1	reviewed	p.R777*	1.000	264	0%	126	37.3%	-	-	-	-	-	HMMPfam_PigN
TNFRSF11A	8792	genome.wustl.edu	37	18	60051984	60051984	+	Missense_Mutation	SNP	G	G	T	rs150973326	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003839.2	+1	reviewed	p.G523V	1.000	83	0%	48	14.6%	-	-	benign(0.093)	deleterious(0.02)	neutral(0.390)	NULL
ZCCHC2	54877	genome.wustl.edu	37	18	60207019	60207019	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017742.4	+1	validated	p.R349*	1.000	262	0%	156	33.3%	-	-	-	-	-	superfamily_PX
PHLPP1	23239	genome.wustl.edu	37	18	60562356	60562356	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194449.2	+1	validated	p.R215*	0.002	139	0%	100	45%	-	-	-	-	-	HMMSmart_SM00364,superfamily_L domain-like
SERPINB13	5275	genome.wustl.edu	37	18	61256910	61256910	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012397.3	+1	validated	p.E62	0.005	433	0%	149	35.6%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB7	8710	genome.wustl.edu	37	18	61471575	61471575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040147.1	+1	validated	p.K283N	0.158	112	0%	54	29.6%	-	-	possibly_damaging(0.944)	tolerated(0.24)	neutral(0.426)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB2	5055	genome.wustl.edu	37	18	61564364	61564364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143818.1	+1	validated	p.L110I	0.827	371	0%	168	19%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB10	5273	genome.wustl.edu	37	18	61602401	61602401	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005024.1	+1	provisional	p.N373	0.936	241	0%	113	38.1%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin
HMSD	284293	genome.wustl.edu	37	18	61627535	61627535	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123366.1	+1	validated	p.F122	0.000	144	0%	46	10.9%	-	-	-	-	-	NULL
CDH7	1005	genome.wustl.edu	37	18	63430078	63430078	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397966	+1	known	e1-1	1.000	289	0%	132	32.6%	-	-	-	-	-	-
CDH7	1005	genome.wustl.edu	37	18	63477204	63477204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004361.2	+1	reviewed	p.T159A	0.998	69	0%	33	24.2%	-	-	benign(0.006)	tolerated(0.5)	neutral(0.010)	HMMPfam_Cadherin,superfamily_Cadherin-like
CDH19	28513	genome.wustl.edu	37	18	64176456	64176456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021153.2	-1	reviewed	p.R535I	0.479	337	0%	158	31%	-	-	possibly_damaging(0.703)	deleterious(0)	deleterious(0.697)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CCDC102B	79839	genome.wustl.edu	37	18	66504023	66504023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093729.1	+1	validated	p.R8Q	0.004	87	0%	38	34.2%	-	-	benign(0.035)	tolerated(0.07)	neutral(0.321)	NULL
RTTN	25914	genome.wustl.edu	37	18	67727116	67727116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173630.3	-1	validated	p.R1637Q	0.000	362	0%	149	25.5%	-	-	benign(0.026)	tolerated(0.46)	neutral(0.013)	NULL
RTTN	25914	genome.wustl.edu	37	18	67776920	67776920	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173630.3	-1	validated	p.T1239	0.219	92	0%	61	36.1%	-	-	-	-	-	NULL
RTTN	25914	genome.wustl.edu	37	18	67795672	67795672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173630.3	-1	validated	p.R1022I	1.000	237	0%	113	36.3%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
NETO1	81832	genome.wustl.edu	37	18	70526289	70526289	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138966.2	-1	reviewed	p.E81*	1.000	152	0%	99	41.4%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
FBXO15	201456	genome.wustl.edu	37	18	71796800	71796800	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142958.1	-1	reviewed	p.E209*	0.987	173	0%	100	38%	-	-	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72347341	72347341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017757.2	+1	reviewed	p.E1456K	1.000	179	0%	116	30.2%	-	-	probably_damaging(0.998)	tolerated(0.5)	deleterious(0.484)	HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TSHZ1	10194	genome.wustl.edu	37	18	72999756	72999756	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005786.4	+1	reviewed	p.I753	1.000	58	0%	49	40.8%	-	-	-	-	-	NULL
TSHZ1	10194	genome.wustl.edu	37	18	72999842	72999842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005786.4	+1	reviewed	p.S782L	0.000	70	0%	37	43.2%	-	-	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
C18orf62	284274	genome.wustl.edu	37	18	73130745	73130745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037331.2	-1	provisional	p.R86*	0.004	275	0%	118	39.8%	-	-	-	-	-	NULL
FLJ44881	400661	genome.wustl.edu	37	18	74402211	74402211	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_039919.1	+1	model	NULL	0.000	169	0.6%	127	30.7%	-	-	-	-	-	-
MBP	4155	genome.wustl.edu	37	18	74817195	74817195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025101.1	-1	reviewed	p.R8Q	0.178	325	0%	222	33.3%	-	-	possibly_damaging(0.867)	deleterious(0.01)	deleterious(0.742)	NULL
SALL3	27164	genome.wustl.edu	37	18	76753955	76753955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_171999.2	+1	validated	p.S655L	1.000	40	0%	15	26.7%	-	-	possibly_damaging(0.808)	tolerated(0.13)	deleterious(0.556)	NULL
HCN2	610	genome.wustl.edu	37	19	603748	603748	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001194.3	+1	validated	p.P279	0.998	243	0%	163	39.3%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
POLRMT	5442	genome.wustl.edu	37	19	622853	622853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005035.3	-1	reviewed	p.D475N	0.037	18	0%	20	40%	-	-	benign(0.008)	tolerated(0.61)	neutral(0.004)	superfamily_SSF56672
C19orf21	126353	genome.wustl.edu	37	19	758522	758522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173481.2	+1	predicted	p.W526G	0.046	62	0%	49	44.9%	-	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
AZU1	566	genome.wustl.edu	37	19	829698	829698	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001700.3	+1	reviewed	p.L118	0.829	50	0%	53	41.5%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
C19orf6	91304	genome.wustl.edu	37	19	1011891	1011891	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033026.1	-1	validated	p.F314	0.963	16	0%	16	31.2%	-	-	-	-	-	HMMPfam_Membralin
ABCA7	10347	genome.wustl.edu	37	19	1046292	1046292	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019112.3	+1	reviewed	p.F503	1.000	49	0%	38	10.5%	-	-	-	-	-	NULL
ABCA7	10347	genome.wustl.edu	37	19	1062225	1062225	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019112.3	+1	reviewed	p.S1875	0.619	25	4%	23	26.1%	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
HMHA1	23526	genome.wustl.edu	37	19	1074182	1074182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012292.2	+1	validated	p.K290N	1.000	32	0%	22	36.4%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_FCH
HMHA1	23526	genome.wustl.edu	37	19	1080778	1080778	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012292.2	+1	validated	p.F670	0.635	54	0%	42	35.7%	-	-	-	-	-	NULL
MIDN	90007	genome.wustl.edu	37	19	1254477	1254477	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177401.4	+1	validated	p.E232	1.000	43	0%	35	42.9%	-	-	-	-	-	NULL
EFNA2	1943	genome.wustl.edu	37	19	1298553	1298553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001405.2	+1	reviewed	p.A153V	0.998	88	0%	54	37%	-	-	possibly_damaging(0.917)	tolerated(0.31)	neutral(0.395)	HMMPfam_Ephrin,superfamily_Cupredoxin
MUM1	84939	genome.wustl.edu	37	19	1358458	1358458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032853.3	+1	validated	p.S71L	0.000	375	0%	190	36.3%	-	-	benign(0.147)	tolerated(1)	neutral(0.013)	NULL
DAZAP1	26528	genome.wustl.edu	37	19	1418718	1418718	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018959.2	+1	reviewed	p.P97	0.220	95	0%	64	15.6%	-	-	-	-	-	NULL
TCF3	6929	genome.wustl.edu	37	19	1611810	1611810	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003200.2	-1	validated	p.R621*	0.127	103	1%	45	26.7%	-	-	-	-	-	NULL
ATP8B3	148229	genome.wustl.edu	37	19	1783130	1783130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138813.2	-1	reviewed	p.G1267V	0.998	238	0%	141	28.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM108A1	81926	genome.wustl.edu	37	19	1877520	1877520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031213.3	-1	validated	p.D283N	1.000	30	0%	22	36.4%	-	-	benign(0.09)	deleterious(0)	neutral(0.451)	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases
FAM108A1	81926	genome.wustl.edu	37	19	1881308	1881308	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031213.3	-1	validated	p.I86	0.758	62	0%	51	41.2%	-	-	-	-	-	PatternScan_TONB_DEPENDENT_REC_1
BTBD2	55643	genome.wustl.edu	37	19	1987554	1987554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017797.3	-1	reviewed	p.R376C	1.000	50	0%	28	32.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHR
OAZ1	4946	genome.wustl.edu	37	19	2272753	2272753	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004152.2	+1	reviewed	p.F162I	1.000	35	0%	25	32%	-	-	possibly_damaging(0.48)	deleterious(0)	deleterious(0.604)	HMMPfam_ODC_AZ,PatternScan_ODC_AZ
ZNF556	80032	genome.wustl.edu	37	19	2877980	2877980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024967.1	+1	provisional	p.P342S	0.071	97	0%	65	43.1%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_SSF57667
ZNF77	58492	genome.wustl.edu	37	19	2933648	2933648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021217.2	-1	validated	p.E493K	0.036	401	0%	273	36.3%	-	-	benign(0.093)	tolerated(0.65)	neutral(0.010)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C19orf71	100128569	genome.wustl.edu	37	19	3543677	3543677	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135580.1	+1	validated	p.Y149	0.041	140	0%	108	38.9%	-	-	-	-	-	NULL
HMG20B	10362	genome.wustl.edu	37	19	3578077	3578077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006339.2	+1	validated	p.V303I	0.626	26	0%	10	40%	-	-	unknown(0)	-	-	NULL
PIP5K1C	23396	genome.wustl.edu	37	19	3638918	3638918	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012398.1	-1	reviewed	p.S628	0.023	46	0%	30	33.3%	-	-	-	-	-	NULL
PIP5K1C	23396	genome.wustl.edu	37	19	3645984	3645984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012398.1	-1	reviewed	p.R445W	1.000	154	0%	74	21.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MATK	4145	genome.wustl.edu	37	19	3778561	3778561	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002378.3	-1	reviewed	p.F411	0.939	229	0.9%	117	38.5%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
MATK	4145	genome.wustl.edu	37	19	3778594	3778594	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002378.3	-1	reviewed	e12-1	1.000	197	0%	104	13.5%	-	-	-	-	-	-
ATCAY	85300	genome.wustl.edu	37	19	3913765	3913765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033064.4	+1	reviewed	p.F292L	1.000	208	0%	118	15.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00516,superfamily_CRAL/TRIO domain
MIR637	693222	genome.wustl.edu	37	19	3961437	3961437	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385000	-1	known	NULL	0.000	67	0%	39	38.5%	-	-	-	-	-	-
DAPK3	1613	genome.wustl.edu	37	19	3964315	3964315	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001348.1	-1	reviewed	p.I160	0.983	156	0%	84	31%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DAPK3	1613	genome.wustl.edu	37	19	3964675	3964675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001348.1	-1	reviewed	p.G126D	1.000	91	0%	73	42.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
EEF2	1938	genome.wustl.edu	37	19	3976618	3976618	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001961.3	-1	reviewed	p.E837	1.000	55	0%	58	36.2%	-	-	-	-	-	superfamily_EF-G C-terminal domain-like
EEF2	1938	genome.wustl.edu	37	19	3982293	3982293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001961.3	-1	reviewed	p.E248K	1.000	246	0%	171	26.3%	-	-	benign(0.025)	tolerated(0.16)	neutral(0.060)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB7A	51341	genome.wustl.edu	37	19	4047884	4047884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015898.2	-1	validated	p.E541K	0.998	66	0%	27	48.1%	-	-	unknown(0)	deleterious(0.01)	-	NULL
CREB3L3	84699	genome.wustl.edu	37	19	4159727	4159727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032607.1	+1	provisional	p.R175Q	0.000	75	0%	47	42.6%	-	-	benign(0.166)	tolerated(0.12)	neutral(0.276)	NULL
ANKRD24	170961	genome.wustl.edu	37	19	4212566	4212566	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000262969	+1	known	e9-1	0.000	259	0%	126	34.1%	-	-	-	-	-	-
ANKRD24	170961	genome.wustl.edu	37	19	4222673	4222673	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133475.1	+1	provisional	p.E1060*	1.000	93	0%	49	28.6%	-	-	-	-	-	NULL
DPP9	91039	genome.wustl.edu	37	19	4683627	4683627	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139159.4	-1	reviewed	p.I731	0.958	69	0%	50	34%	-	-	-	-	-	HMMPfam_Peptidase_S9,superfamily_SSF53474
DPP9	91039	genome.wustl.edu	37	19	4685732	4685732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139159.4	-1	reviewed	p.S646L	0.066	105	0%	70	11.4%	-	-	possibly_damaging(0.594)	deleterious(0.01)	deleterious(0.611)	superfamily_SSF53474
FEM1A	55527	genome.wustl.edu	37	19	4793540	4793540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018708.2	+1	validated	p.F558L	1.000	88	1.1%	82	24.4%	-	-	possibly_damaging(0.946)	tolerated(0.1)	deleterious(0.676)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TICAM1	148022	genome.wustl.edu	37	19	4817174	4817174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182919.2	-1	validated	p.E406K	0.997	126	0.8%	74	25.7%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
TICAM1	148022	genome.wustl.edu	37	19	4817925	4817925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000343192	-1	known	p.S15Y	0.004	50	0%	46	41.3%	-	-	-	-	-	NULL
ARRDC5	645432	genome.wustl.edu	37	19	4891366	4891366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080523.1	-1	provisional	p.R241W	0.412	142	0%	118	30.5%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Arrestin_C,superfamily_E set domains
PTPRS	5802	genome.wustl.edu	37	19	5220022	5220022	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002850.3	-1	reviewed	p.F1231	0.940	51	2%	30	40%	-	-	-	-	-	NULL
HSD11B1L	374875	genome.wustl.edu	37	19	5687545	5687545	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198533.1	+1	provisional	p.Y178*	0.937	32	0%	39	20.5%	-	-	-	-	-	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
LONP1	9361	genome.wustl.edu	37	19	5699086	5699086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004793.2	-1	reviewed	p.R546H	1.000	38	0%	13	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
DUS3L	56931	genome.wustl.edu	37	19	5789285	5789285	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020175.2	-1	validated	p.P278R	0.002	12	0%	10	50%	-	-	benign(0.008)	tolerated(0.33)	neutral(0.024)	NULL
FUT6	2528	genome.wustl.edu	37	19	5831838	5831838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000150.2	-1	reviewed	p.E247D	1.000	289	0%	192	35.4%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Glyco_transf_10
ACSBG2	81616	genome.wustl.edu	37	19	6183263	6183263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030924.3	+1	validated	p.Q434H	0.000	190	0%	66	27.3%	-	-	benign(0.006)	tolerated(0.08)	neutral(0.300)	HMMPfam_AMP-binding,superfamily_SSF56801
ACSBG2	81616	genome.wustl.edu	37	19	6187825	6187825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030924.3	+1	validated	p.E632D	0.973	296	0%	180	30.6%	-	-	benign(0.002)	tolerated(0.42)	neutral(0.014)	superfamily_SSF56801
GTF2F1	2962	genome.wustl.edu	37	19	6391942	6391942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002096.2	-1	validated	p.D35N	1.000	666	0%	406	39.9%	-	-	probably_damaging(0.992)	tolerated(0.46)	neutral(0.460)	HMMPfam_TFIIF_alpha,superfamily_Rap30/74 interaction domains
KHSRP	8570	genome.wustl.edu	37	19	6418013	6418013	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003685.2	-1	validated	p.S319	0.394	138	0%	99	38.4%	-	-	-	-	-	superfamily_Eukaryotic type KH-domain (KH-domain type I)
DENND1C	79958	genome.wustl.edu	37	19	6468353	6468353	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024898.2	-1	validated	p.S561	0.379	166	0%	115	34.8%	-	-	-	-	-	NULL
DENND1C	79958	genome.wustl.edu	37	19	6471463	6471463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024898.2	-1	validated	p.F401L	0.622	141	0%	101	36.6%	-	-	probably_damaging(0.965)	tolerated(0.09)	deleterious(0.704)	NULL
DENND1C	79958	genome.wustl.edu	37	19	6480028	6480028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024898.2	-1	validated	p.E18K	1.000	184	0%	106	32.1%	-	-	possibly_damaging(0.435)	deleterious(0.05)	deleterious(0.487)	HMMPfam_uDENN,HMMSmart_uDENN
C3	718	genome.wustl.edu	37	19	6690717	6690717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.E1138K	0.956	218	0%	145	41.4%	-	-	probably_damaging(0.975)	tolerated(0.05)	deleterious(0.762)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
C3	718	genome.wustl.edu	37	19	6694485	6694485	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.F1037	0.076	207	0.5%	86	41.9%	-	-	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases
C3	718	genome.wustl.edu	37	19	6696399	6696399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.L981I	0.770	213	0%	157	35.7%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
C3	718	genome.wustl.edu	37	19	6697783	6697783	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.F821	0.923	75	0%	56	46.4%	-	-	-	-	-	HMMPfam_A2M
GPR108	56927	genome.wustl.edu	37	19	6733610	6733610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080452.1	-1	provisional	p.P232S	0.003	196	0%	128	40.6%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_Lung_7-TM_R
TRIP10	9322	genome.wustl.edu	37	19	6741291	6741291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004240.2	+1	validated	p.K66E	1.000	298	0%	119	36.1%	-	-	benign(0.003)	tolerated(0.56)	neutral(0.006)	HMMPfam_FCH,HMMSmart_SM00055
TRIP10	9322	genome.wustl.edu	37	19	6746539	6746539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004240.2	+1	validated	p.R354H	0.046	212	0%	93	34.4%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
TRIP10	9322	genome.wustl.edu	37	19	6750544	6750544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004240.2	+1	validated	p.E463D	0.791	217	0%	115	28.7%	-	-	benign(0)	tolerated(0.15)	neutral(0.241)	superfamily_SH3-domain
VAV1	7409	genome.wustl.edu	37	19	6772993	6772993	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005428.2	+1	reviewed	p.E59*	0.999	103	0%	66	43.9%	-	-	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
VAV1	7409	genome.wustl.edu	37	19	6820782	6820782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005428.2	+1	reviewed	p.E92K	0.996	304	0%	171	31.6%	-	-	possibly_damaging(0.599)	deleterious(0.01)	deleterious(0.613)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
EMR1	2015	genome.wustl.edu	37	19	6908735	6908735	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001974.3	+1	reviewed	p.S358	0.000	339	0%	186	38.2%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ENSG00000182315	0	genome.wustl.edu	37	19	7058574	7058574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000333843	-1	known	p.L15M	0.030	1024	0%	525	12.2%	-	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	NULL
ZNF557	79230	genome.wustl.edu	37	19	7081448	7081448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044387.1	+1	validated	p.L109I	0.004	212	0%	105	31.4%	-	-	benign(0.019)	tolerated(0.49)	neutral(0.011)	NULL
INSR	3643	genome.wustl.edu	37	19	7166226	7166226	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000208.2	-1	reviewed	p.S600	1.000	233	0%	112	28.6%	-	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
INSR	3643	genome.wustl.edu	37	19	7174603	7174603	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000208.2	-1	reviewed	p.R372*	1.000	132	0%	94	35.1%	-	-	-	-	-	HMMPfam_Recep_L_domain,superfamily_L domain-like
C19orf45	374877	genome.wustl.edu	37	19	7573220	7573220	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198534.2	+1	validated	p.F474	0.001	70	0%	47	36.2%	-	-	-	-	-	NULL
MCOLN1	57192	genome.wustl.edu	37	19	7589945	7589945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020533.2	+1	reviewed	p.R44C	0.988	55	0%	30	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MCOLN1	57192	genome.wustl.edu	37	19	7592790	7592790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020533.2	+1	reviewed	p.N241H	1.000	125	0%	73	28.8%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7676636	7676636	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080429.2	+1	validated	p.V446	0.993	24	0%	23	34.8%	-	-	-	-	-	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7682267	7682267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080429.2	+1	validated	p.R1117W	0.039	227	0%	115	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XAB2	56949	genome.wustl.edu	37	19	7690780	7690780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020196.2	-1	validated	p.G270S	1.000	85	0%	71	28.2%	-	-	possibly_damaging(0.523)	deleterious(0.04)	deleterious(0.525)	HMMSmart_HAT,superfamily_SSF48452
CLEC4M	10332	genome.wustl.edu	37	19	7832459	7832459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014257.4	+1	reviewed	p.D332Y	0.060	387	0%	228	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TIMM44	10469	genome.wustl.edu	37	19	7992125	7992125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006351.3	-1	validated	p.A436T	0.998	25	0%	20	25%	-	-	benign(0.431)	tolerated(0.05)	deleterious(0.486)	HMMPfam_Tim44
TIMM44	10469	genome.wustl.edu	37	19	7992140	7992140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006351.3	-1	validated	p.E431K	1.000	23	0%	24	33.3%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Tim44
ELAVL1	1994	genome.wustl.edu	37	19	8046030	8046030	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001419.2	-1	reviewed	p.A71	0.661	283	0%	165	37.6%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
FBN3	84467	genome.wustl.edu	37	19	8136955	8136955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032447.3	-1	reviewed	p.R2689C	0.827	68	0%	59	11.9%	-	-	possibly_damaging(0.836)	deleterious(0.01)	deleterious(0.725)	NULL
FBN3	84467	genome.wustl.edu	37	19	8136997	8136997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032447.3	-1	reviewed	p.E2675K	1.000	83	0%	70	25.7%	-	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	NULL
PRAM1	84106	genome.wustl.edu	37	19	8563567	8563567	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032152.3	-1	reviewed	p.F375	0.000	18	0%	14	50%	-	-	-	-	-	NULL
PRAM1	84106	genome.wustl.edu	37	19	8563890	8563890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032152.3	-1	reviewed	p.A268T	0.000	72	0%	40	30%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
MYO1F	4542	genome.wustl.edu	37	19	8595191	8595191	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012335.3	-1	validated	p.F739	0.323	118	0%	88	33%	-	-	-	-	-	HMMPfam_Myosin_TH1
MYO1F	4542	genome.wustl.edu	37	19	8612995	8612995	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012335.3	-1	validated	p.F398	1.000	170	0%	110	38.2%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS10	81794	genome.wustl.edu	37	19	8651313	8651313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030957.2	-1	reviewed	p.F815L	1.000	36	0%	34	41.2%	-	-	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	HMMPfam_ADAM_spacer1
ADAMTS10	81794	genome.wustl.edu	37	19	8660742	8660742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030957.2	-1	reviewed	p.D461E	1.000	92	0%	67	49.3%	-	-	benign(0.336)	tolerated(1)	neutral(0.106)	NULL
ACTL9	284382	genome.wustl.edu	37	19	8808649	8808649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178525.3	-1	validated	p.H135N	1.000	19	0%	27	22.2%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ZNF558	148156	genome.wustl.edu	37	19	8922677	8922677	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144693.1	-1	provisional	p.T163	0.000	119	0%	73	38.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MUC16	94025	genome.wustl.edu	37	19	9028332	9028332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.D12154Y	0.002	309	0%	256	15.6%	-	-	possibly_damaging(0.539)	-	-	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9049655	9049655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S10659L	0.000	530	0%	297	31.6%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9058397	9058397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.M9683I	0.000	557	0%	286	40.2%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9060595	9060595	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.E8951*	0.000	276	0%	192	35.9%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9065243	9065243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.M7401I	0.000	329	0%	206	38.3%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9076796	9076796	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.I3550	0.000	743	0%	448	33%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9077446	9077446	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.E3334*	0.000	251	0%	174	35.6%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9083110	9083110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.T2902N	0.000	317	0%	153	31.4%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9084596	9084596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.L2407F	0.117	462	0%	227	36.6%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9088279	9088279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S1179N	0.001	594	0%	315	38.7%	-	-	unknown(0)	-	-	NULL
OR7G3	390883	genome.wustl.edu	37	19	9237596	9237596	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001958.1	-1	provisional	p.E11*	0.129	269	0%	112	29.5%	-	-	-	-	-	superfamily_SSF81321
ZNF317	57693	genome.wustl.edu	37	19	9269581	9269581	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020933.3	+1	provisional	p.T155	0.013	366	0%	227	29.5%	-	-	-	-	-	NULL
ZNF317	57693	genome.wustl.edu	37	19	9271632	9271632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020933.3	+1	provisional	p.M437I	0.886	169	0%	83	39.8%	-	-	possibly_damaging(0.612)	deleterious(0.03)	deleterious(0.577)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR7E24	26648	genome.wustl.edu	37	19	9361785	9361785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079935.1	+1	provisional	p.Q22H	0.000	128	0%	92	40.2%	-	-	benign(0.022)	deleterious(0.05)	neutral(0.346)	superfamily_Family A G protein-coupled receptor-like
ZNF699	374879	genome.wustl.edu	37	19	9407512	9407512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198535.1	-1	provisional	p.T190A	0.004	168	0.6%	84	38.1%	-	-	benign(0.32)	tolerated(0.07)	neutral(0.419)	superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577485	9577485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152476.2	-1	validated	p.K713R	0.005	246	0%	141	38.3%	-	-	probably_damaging(0.957)	tolerated(0.38)	neutral(0.418)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9579006	9579006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152476.2	-1	validated	p.R206I	0.141	115	0%	62	33.9%	-	-	probably_damaging(0.994)	tolerated(0.19)	deleterious(0.502)	NULL
ZNF560	147741	genome.wustl.edu	37	19	9580365	9580365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152476.2	-1	validated	p.S157I	0.535	294	0%	113	29.2%	-	-	possibly_damaging(0.948)	tolerated(0.08)	deleterious(0.691)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF121	7675	genome.wustl.edu	37	19	9676906	9676906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008727.2	-1	validated	p.V295I	0.000	281	0%	160	36.9%	-	-	possibly_damaging(0.499)	tolerated(0.37)	neutral(0.185)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF121	7675	genome.wustl.edu	37	19	9677126	9677126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008727.2	-1	validated	p.I221M	0.035	140	0%	97	23.7%	-	-	possibly_damaging(0.86)	deleterious(0.02)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF812	729648	genome.wustl.edu	37	19	9801763	9801763	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726949.2	-1	model	p.F66C	0.176	313	0%	151	13.9%	-	-	possibly_damaging(0.553)	tolerated(1)	neutral(0.189)	NULL
ZNF846	162993	genome.wustl.edu	37	19	9873983	9873983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077624.1	-1	validated	p.E39D	0.999	319	0%	181	38.7%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
RDH8	50700	genome.wustl.edu	37	19	10131437	10131437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015725.2	+1	validated	p.F165L	1.000	241	0%	140	38.6%	-	-	probably_damaging(0.999)	tolerated(0.93)	deleterious(0.490)	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd
PPAN-P2RY11	692312	genome.wustl.edu	37	19	10221404	10221404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040664.1	+1	validated	p.R355W	0.005	112	0%	45	48.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DNMT1	1786	genome.wustl.edu	37	19	10254465	10254465	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130823.1	-1	reviewed	p.K1031N	1.000	301	0%	223	30.9%	-	-	possibly_damaging(0.598)	tolerated(0.15)	neutral(0.448)	HMMPfam_BAH,HMMSmart_SM00439
ZGLP1	100125288	genome.wustl.edu	37	19	10418999	10418999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103167.1	-1	validated	p.S120L	0.000	74	0%	53	30.2%	-	-	benign(0.082)	tolerated(0.18)	neutral(0.062)	NULL
KRI1	65095	genome.wustl.edu	37	19	10672385	10672385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023008.3	-1	validated	p.S155L	0.000	277	0%	157	23.6%	-	-	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
LDLR	3949	genome.wustl.edu	37	19	11215934	11215934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000527.3	+1	reviewed	p.D118N	0.599	44	0%	40	35%	-	-	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module
DOCK6	57572	genome.wustl.edu	37	19	11327765	11327765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.R1240H	1.000	59	0%	32	18.8%	-	-	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	NULL
EPOR	2057	genome.wustl.edu	37	19	11494874	11494874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000121.3	-1	reviewed	p.L4I	0.001	16	0%	18	33.3%	-	-	benign(0.167)	deleterious(0.04)	neutral(0.364)	NULL
PRKCSH	5589	genome.wustl.edu	37	19	11559370	11559370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002743.2	+1	reviewed	p.E397D	1.000	183	0%	149	32.2%	-	-	probably_damaging(0.998)	tolerated(0.27)	deleterious(0.508)	superfamily_Man6php_recept
PRKCSH	5589	genome.wustl.edu	37	19	11560204	11560204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002743.2	+1	reviewed	p.E522K	0.000	30	0%	17	29.4%	-	-	benign(0.26)	tolerated(0.58)	neutral(0.032)	NULL
ACP5	54	genome.wustl.edu	37	19	11687622	11687622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111034.1	-1	reviewed	p.R100C	0.012	285	0%	177	19.2%	-	-	possibly_damaging(0.625)	tolerated(0.19)	neutral(0.268)	HMMPfam_Metallophos,superfamily_SSF56300
ZNF627	199692	genome.wustl.edu	37	19	11725643	11725643	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145295.3	+1	validated	p.G44	0.078	61	0%	40	37.5%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF627	199692	genome.wustl.edu	37	19	11728202	11728202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145295.3	+1	validated	p.R295Q	0.000	201	0%	132	38.6%	-	-	possibly_damaging(0.545)	tolerated(0.88)	neutral(0.185)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF627	199692	genome.wustl.edu	37	19	11728550	11728550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145295.3	+1	validated	p.R411I	0.149	128	0%	83	12%	-	-	benign(0.254)	deleterious(0.01)	neutral(0.432)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF823	55552	genome.wustl.edu	37	19	11832709	11832709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080493.2	-1	validated	p.R547I	1.000	306	0%	236	33.1%	-	-	benign(0.055)	tolerated(0.06)	neutral(0.326)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF823	55552	genome.wustl.edu	37	19	11833054	11833054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080493.2	-1	validated	p.R432Q	0.004	235	0%	182	41.2%	-	-	benign(0.171)	tolerated(0.54)	neutral(0.023)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF823	55552	genome.wustl.edu	37	19	11833579	11833579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080493.2	-1	validated	p.F257S	0.832	437	0%	319	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF491	126069	genome.wustl.edu	37	19	11917795	11917795	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152356.3	+1	validated	p.R343*	0.004	196	0%	125	31.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF491	126069	genome.wustl.edu	37	19	11917976	11917976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152356.3	+1	validated	p.R403I	0.001	157	0%	84	32.1%	-	-	possibly_damaging(0.831)	deleterious(0.04)	deleterious(0.665)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF69	7620	genome.wustl.edu	37	19	12016011	12016011	+	Missense_Mutation	SNP	G	G	A	rs190127307	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429654	+1	known	p.E267K	0.125	226	0.9%	153	32%	-	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF69	7620	genome.wustl.edu	37	19	12016861	12016861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429654	+1	known	p.R550Q	0.000	183	0%	103	35%	-	-	benign(0.066)	tolerated(1)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF700	90592	genome.wustl.edu	37	19	12060493	12060493	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144566.1	+1	provisional	p.R552*	0.033	293	0%	207	30.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF763	284390	genome.wustl.edu	37	19	12089265	12089265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012753.1	+1	validated	p.E179*	0.193	307	0%	175	30.3%	-	-	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF433	163059	genome.wustl.edu	37	19	12126425	12126425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080411.1	-1	provisional	p.E419D	1.000	239	0%	169	39.1%	-	-	probably_damaging(0.967)	tolerated(0.06)	deleterious(0.732)	superfamily_C2H2 and C2HC zinc fingers
ZNF433	163059	genome.wustl.edu	37	19	12126693	12126693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080411.1	-1	provisional	p.R330I	0.990	210	0%	123	13%	-	-	benign(0.069)	tolerated(0.08)	neutral(0.304)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12154972	12154972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.R462Q	0.041	211	0%	159	35.8%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12155296	12155296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.G354E	1.000	229	0.4%	168	38.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12155460	12155460	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.E299	1.000	331	0%	211	33.2%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12157527	12157527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.W65R	0.997	454	0%	281	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF844	284391	genome.wustl.edu	37	19	12187738	12187738	+	Silent	SNP	C	C	T	rs144932544	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136501.1	+1	provisional	p.F601	0.000	274	0%	157	35.7%	-	-	-	-	-	NULL
ENSG00000188474	0	genome.wustl.edu	37	19	12222823	12222823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339302	+1	known	p.S154Y	0.001	42	0%	22	31.8%	-	-	benign(0.059)	tolerated(1)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000188474	0	genome.wustl.edu	37	19	12223747	12223747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339302	+1	known	p.R462Q	0.000	64	0%	50	26%	-	-	benign(0.26)	tolerated(0.69)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF625	90589	genome.wustl.edu	37	19	12256527	12256527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145233.2	-1	provisional	p.R169Q	0.003	388	0%	262	35.5%	-	-	possibly_damaging(0.594)	tolerated(0.66)	neutral(0.207)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF625	90589	genome.wustl.edu	37	19	12256599	12256599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145233.2	-1	provisional	p.R145Q	0.156	323	0%	203	37.9%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF136	7695	genome.wustl.edu	37	19	12297518	12297518	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003437.2	+1	validated	p.E109*	0.154	457	0%	190	33.7%	-	-	-	-	-	NULL
ZNF136	7695	genome.wustl.edu	37	19	12297618	12297618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003437.2	+1	validated	p.R142H	0.011	330	0%	199	12.6%	-	-	benign(0.23)	tolerated(0.65)	neutral(0.026)	superfamily_SSF57667
ZNF136	7695	genome.wustl.edu	37	19	12298584	12298584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003437.2	+1	validated	p.R464Q	0.000	274	0%	153	32%	-	-	possibly_damaging(0.739)	tolerated(1)	neutral(0.271)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF44	51710	genome.wustl.edu	37	19	12383954	12383954	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016264.3	-1	validated	p.K372N	0.049	329	0%	202	17.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF44	51710	genome.wustl.edu	37	19	12384031	12384031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016264.3	-1	validated	p.D347Y	0.001	378	0%	236	36.4%	-	-	probably_damaging(0.995)	tolerated(0.43)	deleterious(0.471)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF44	51710	genome.wustl.edu	37	19	12384095	12384095	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016264.3	-1	validated	p.Q325	0.000	395	0%	256	34.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF799	90576	genome.wustl.edu	37	19	12501619	12501619	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080821.1	-1	validated	p.P531	0.009	403	0.2%	290	31.4%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12574841	12574841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152601.3	-1	validated	p.R632Q	0.000	259	0%	186	24.7%	-	-	benign(0.029)	tolerated(0.71)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575333	12575333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152601.3	-1	validated	p.R468I	0.000	268	0%	189	46%	-	-	possibly_damaging(0.894)	tolerated(0.2)	neutral(0.401)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575417	12575417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152601.3	-1	validated	p.R440M	0.002	271	0.4%	198	32.8%	-	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576089	12576089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152601.3	-1	validated	p.R216I	0.014	307	0%	195	31.8%	-	-	benign(0.368)	deleterious(0.04)	neutral(0.466)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12637317	12637317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144976.3	-1	validated	p.K535N	0.000	245	0%	199	32.2%	-	-	possibly_damaging(0.811)	tolerated(0.16)	neutral(0.365)	NULL
ZNF564	163050	genome.wustl.edu	37	19	12638453	12638453	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144976.3	-1	validated	p.R157*	0.101	362	0%	220	20.5%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF791	163049	genome.wustl.edu	37	19	12735514	12735514	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153358.2	+1	validated	p.R61*	0.001	189	0%	65	27.7%	-	-	-	-	-	HMMSmart_KRAB
DHPS	1725	genome.wustl.edu	37	19	12786878	12786878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001930.2	-1	reviewed	p.E323K	1.000	82	0%	50	44%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DS,superfamily_DHS-like NAD/FAD-binding domain
TNPO2	30000	genome.wustl.edu	37	19	12812468	12812468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136196.1	-1	validated	p.D844N	1.000	91	0%	60	28.3%	-	-	possibly_damaging(0.684)	tolerated(0.31)	neutral(0.271)	superfamily_ARM repeat
BEST2	54831	genome.wustl.edu	37	19	12866240	12866240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017682.2	+1	reviewed	p.D228E	1.000	413	0%	234	36.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bestrophin
RNASEH2A	10535	genome.wustl.edu	37	19	12918027	12918027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006397.2	+1	reviewed	p.K69N	1.000	567	0%	304	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNase_HII,superfamily_Ribonuclease H-like
FARSA	2193	genome.wustl.edu	37	19	13035595	13035595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004461.2	-1	validated	p.F351L	1.000	186	0%	152	34.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2d,superfamily_Class II aaRS and biotin synthetases
CACNA1A	773	genome.wustl.edu	37	19	13368351	13368351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127222.1	-1	reviewed	p.S1468L	1.000	375	0.3%	205	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1A	773	genome.wustl.edu	37	19	13428087	13428087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127222.1	-1	reviewed	p.S465L	1.000	130	0%	66	40.9%	-	-	benign(0.085)	tolerated(0.11)	neutral(0.278)	NULL
CCDC130	81576	genome.wustl.edu	37	19	13868235	13868235	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030818.2	+1	provisional	p.F48	0.974	143	0%	110	30.9%	-	-	-	-	-	HMMPfam_DUF572
C19orf57	79173	genome.wustl.edu	37	19	14000019	14000019	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024323.3	-1	predicted	p.F550	0.000	32	0%	26	46.2%	-	-	-	-	-	NULL
RFX1	5989	genome.wustl.edu	37	19	14076532	14076532	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002918.4	-1	validated	p.F673	0.995	138	0%	97	40.2%	-	-	-	-	-	NULL
PALM3	342979	genome.wustl.edu	37	19	14165241	14165241	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145028.1	-1	validated	p.E400*	0.001	851	0%	535	63.9%	-	-	-	-	-	NULL
ENSG00000248045	0	genome.wustl.edu	37	19	14281668	14281668	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000498856	+1	novel	NULL	0.001	34	0%	28	39.3%	-	-	-	-	-	-
CD97	976	genome.wustl.edu	37	19	14517179	14517179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078481.2	+1	reviewed	p.H620N	1.000	109	0%	66	13.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
PKN1	5585	genome.wustl.edu	37	19	14578700	14578700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213560.1	+1	reviewed	p.E639K	0.997	191	0.5%	112	35.7%	-	-	benign(0.201)	tolerated(0.13)	neutral(0.272)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
DNAJB1	3337	genome.wustl.edu	37	19	14627332	14627332	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006145.1	-1	provisional	p.I246	1.000	227	0%	119	37.8%	-	-	-	-	-	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
TECR	9524	genome.wustl.edu	37	19	14673357	14673357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138501.4	+1	validated	p.K12N	1.000	252	0%	105	41.9%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ZNF333	84449	genome.wustl.edu	37	19	14829499	14829499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032433.2	+1	validated	p.D454Y	0.002	209	0.5%	102	45.1%	-	-	possibly_damaging(0.732)	deleterious(0)	deleterious(0.712)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF333	84449	genome.wustl.edu	37	19	14829800	14829800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032433.2	+1	validated	p.R554Q	0.989	102	0%	67	35.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SLC1A6	6511	genome.wustl.edu	37	19	15083691	15083691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005071.1	-1	provisional	p.R11Q	1.000	11	0%	10	40%	-	-	possibly_damaging(0.473)	tolerated(0.08)	neutral(0.456)	NULL
CCDC105	126402	genome.wustl.edu	37	19	15124536	15124536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173482.2	+1	validated	p.S208I	0.001	467	0%	157	33.8%	-	-	possibly_damaging(0.462)	tolerated(0.15)	neutral(0.392)	NULL
ILVBL	10994	genome.wustl.edu	37	19	15227316	15227316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006844.3	-1	reviewed	p.V402M	0.045	65	0%	41	9.8%	-	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_TPP_enzyme_M,superfamily_DHS-like NAD/FAD-binding domain
NOTCH3	4854	genome.wustl.edu	37	19	15292520	15292520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.D887N	1.000	39	0%	36	27.8%	-	-	possibly_damaging(0.909)	tolerated(0.07)	deleterious(0.681)	HMMSmart_SM00179,PatternScan_EGF_CA
NOTCH3	4854	genome.wustl.edu	37	19	15299971	15299971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.E403K	1.000	45	0%	41	29.3%	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
EPHX3	79852	genome.wustl.edu	37	19	15341895	15341895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142886.1	-1	validated	p.S165L	1.000	186	0%	93	25.8%	-	-	possibly_damaging(0.653)	tolerated(0.15)	deleterious(0.471)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
EPHX3	79852	genome.wustl.edu	37	19	15342204	15342204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142886.1	-1	validated	p.F111L	1.000	76	0%	44	38.6%	-	-	benign(0.097)	deleterious(0.01)	neutral(0.413)	superfamily_alpha/beta-Hydrolases
AKAP8	10270	genome.wustl.edu	37	19	15484701	15484701	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005858.2	-1	reviewed	p.S89	0.006	158	0%	93	29%	-	-	-	-	-	superfamily_SSF56935
WIZ	58525	genome.wustl.edu	37	19	15533915	15533915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021241.2	-1	validated	p.A786V	1.000	92	0%	43	30.2%	-	-	unknown(0)	deleterious(0.01)	-	NULL
WIZ	58525	genome.wustl.edu	37	19	15538309	15538309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021241.2	-1	validated	p.E189K	0.992	26	0%	15	33.3%	-	-	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
WIZ	58525	genome.wustl.edu	37	19	15547682	15547682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021241.2	-1	validated	p.R155H	0.838	74	0%	45	28.9%	-	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
RASAL3	64926	genome.wustl.edu	37	19	15571043	15571043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022904.1	-1	validated	p.K211N	1.000	428	0%	225	31.6%	-	-	probably_damaging(0.959)	tolerated(0.26)	neutral(0.436)	NULL
CYP4F3	4051	genome.wustl.edu	37	19	15769171	15769171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000896.2	+1	reviewed	p.D405Y	1.000	187	0%	121	35.5%	-	-	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F12	66002	genome.wustl.edu	37	19	15791204	15791204	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023944.2	+1	reviewed	p.E134*	0.668	125	0%	121	36.4%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
ENSG00000225607	0	genome.wustl.edu	37	19	15881850	15881850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412610	-1	known	p.R240K	0.940	195	0%	137	15.3%	-	-	benign(0.002)	tolerated(0.36)	neutral(0.020)	NULL
CYP4F11	57834	genome.wustl.edu	37	19	16033229	16033229	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128932.1	-1	reviewed	p.G310	0.328	592	0%	285	35.8%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F11	57834	genome.wustl.edu	37	19	16045179	16045179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128932.1	-1	reviewed	p.V14M	0.000	72	0%	60	31.7%	-	-	benign(0.009)	tolerated(0.08)	neutral(0.300)	NULL
HSH2D	84941	genome.wustl.edu	37	19	16268545	16268545	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032855.2	+1	provisional	p.E334*	0.028	78	0%	45	15.6%	-	-	possibly_damaging(0.459)	deleterious(0.02)	deleterious(0.533)	NULL
FAM32A	26017	genome.wustl.edu	37	19	16296498	16296498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014077.2	+1	predicted	p.K46N	1.000	251	0%	68	32.4%	-	-	probably_damaging(0.958)	tolerated(0.66)	neutral(0.404)	HMMPfam_DUF1754
CALR3	125972	genome.wustl.edu	37	19	16591460	16591460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145046.3	-1	validated	p.D326Y	0.999	385	0%	196	20.4%	-	-	benign(0.149)	deleterious(0.01)	neutral(0.419)	superfamily_ConA_like_lec_gl
TMEM38A	79041	genome.wustl.edu	37	19	16791302	16791302	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024074.1	+1	provisional	p.R126*	0.999	285	0%	218	19.3%	-	-	-	-	-	HMMPfam_DUF714
NWD1	284434	genome.wustl.edu	37	19	16910938	16910938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.D1099G	1.000	97	0%	66	34.8%	-	-	possibly_damaging(0.811)	deleterious(0.02)	deleterious(0.689)	superfamily_WD40 repeat-like
CPAMD8	27151	genome.wustl.edu	37	19	17010304	17010304	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443236	-1	known	p.C1668F	0.933	91	0%	63	38.1%	-	-	-	-	-	HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain
MYO9B	4650	genome.wustl.edu	37	19	17264799	17264799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004145.3	+1	reviewed	p.L341V	0.827	267	0%	144	40.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO9B	4650	genome.wustl.edu	37	19	17273228	17273228	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004145.3	+1	reviewed	p.R496	0.977	107	0%	77	15.6%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO9B	4650	genome.wustl.edu	37	19	17283260	17283260	+	Silent	SNP	C	C	T	rs142767244	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004145.3	+1	reviewed	p.F636	1.000	177	0%	102	41.2%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
ANKLE1	126549	genome.wustl.edu	37	19	17394946	17394946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152363.4	+1	validated	p.T416M	0.927	122	0%	75	37.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PLVAP	83483	genome.wustl.edu	37	19	17488069	17488069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031310.1	-1	provisional	p.S10F	0.001	68	0%	55	45.5%	-	-	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	HMMPfam_PV-1
FAM125A	93343	genome.wustl.edu	37	19	17531415	17531415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138401.2	+1	provisional	p.F86L	0.981	125	0%	100	25%	-	-	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	HMMPfam_DUF2464
UNC13A	23025	genome.wustl.edu	37	19	17752364	17752364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080421.2	-1	validated	p.N913S	1.000	172	0%	119	33.6%	-	-	benign(0.023)	tolerated(0.14)	neutral(0.251)	NULL
UNC13A	23025	genome.wustl.edu	37	19	17756817	17756817	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080421.2	-1	validated	p.Y804*	1.000	270	0%	139	34.5%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MAP1S	55201	genome.wustl.edu	37	19	17836709	17836709	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018174.4	+1	validated	p.F172	0.028	27	0%	12	33.3%	-	-	-	-	-	NULL
MAP1S	55201	genome.wustl.edu	37	19	17836818	17836818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018174.4	+1	validated	p.E209K	0.937	44	0%	36	27.8%	-	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
FCHO1	23149	genome.wustl.edu	37	19	17894972	17894972	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015122.2	+1	validated	p.T718	0.238	31	0%	21	19%	-	-	-	-	-	NULL
ARRDC2	27106	genome.wustl.edu	37	19	18119891	18119891	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015683.1	+1	validated	p.V151	0.989	30	0%	33	15.2%	-	-	-	-	-	HMMPfam_Arrestin_N,superfamily_E set domains
ARRDC2	27106	genome.wustl.edu	37	19	18120783	18120783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015683.1	+1	validated	p.R262W	1.000	7	0.000	10	0.500	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Arrestin_C,superfamily_E set domains
PIK3R2	5296	genome.wustl.edu	37	19	18277050	18277050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005027.2	+1	validated	p.E499D	1.000	120	0%	66	24.2%	-	-	benign(0.069)	deleterious(0.05)	neutral(0.350)	NULL
PGPEP1	54858	genome.wustl.edu	37	19	18474205	18474205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017712.2	+1	validated	p.L148I	1.000	123	0%	71	29.6%	-	-	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_Peptidase_C15,PatternScan_PYRASE_CYS,superfamily_Peptidase_C15-like
ELL	8178	genome.wustl.edu	37	19	18569028	18569028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006532.3	-1	validated	p.R286W	0.997	76	0%	76	42.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ELL
FKBP8	23770	genome.wustl.edu	37	19	18642994	18642994	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012181.3	-1	reviewed	p.I409	0.939	67	0%	51	43.1%	-	-	-	-	-	NULL
KLHL26	55295	genome.wustl.edu	37	19	18778567	18778567	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018316.1	+1	provisional	p.F120	0.786	40	0%	53	28.3%	-	-	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
CRTC1	23373	genome.wustl.edu	37	19	18888013	18888013	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098482.1	+1	validated	p.E592*	1.000	33	0%	22	40.9%	-	-	-	-	-	NULL
UPF1	5976	genome.wustl.edu	37	19	18958627	18958627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002911.3	+1	reviewed	p.G149E	1.000	303	0%	164	40.2%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_UPF1_Zn_bind
COPE	11316	genome.wustl.edu	37	19	19017824	19017824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007263.3	-1	reviewed	p.D130N	1.000	54	0%	42	38.1%	-	-	benign(0.013)	deleterious(0)	neutral(0.445)	HMMPfam_Coatomer_E,superfamily_TPR-like
COPE	11316	genome.wustl.edu	37	19	19021872	19021872	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007263.3	-1	reviewed	p.F66	0.994	107	0.9%	88	35.2%	-	-	-	-	-	HMMPfam_Coatomer_E
DDX49	54555	genome.wustl.edu	37	19	19038647	19038647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019070.4	+1	validated	p.R392Q	0.989	215	0%	99	39.4%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_SSF52540
RFXANK	8625	genome.wustl.edu	37	19	19309477	19309477	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003721.2	+1	reviewed	p.T192	0.001	144	0%	94	40.4%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NCAN	1463	genome.wustl.edu	37	19	19337619	19337619	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004386.2	+1	validated	p.S466*	0.000	35	0%	25	32%	-	-	-	-	-	NULL
TSSK6	83983	genome.wustl.edu	37	19	19626008	19626008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032037.2	-1	validated	p.E77K	1.000	42	0%	40	30%	-	-	possibly_damaging(0.773)	tolerated(0.06)	deleterious(0.610)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LPAR2	9170	genome.wustl.edu	37	19	19737838	19737838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004720.5	-1	reviewed	p.L86I	1.000	23	0%	26	23.1%	-	-	benign(0.122)	tolerated(0.63)	neutral(0.013)	HMMPfam_7tm_1,superfamily_SSF81321
GMIP	51291	genome.wustl.edu	37	19	19745629	19745629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016573.2	-1	reviewed	p.S620L	0.937	41	0%	39	30.8%	-	-	benign(0.023)	deleterious(0.01)	neutral(0.407)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ZNF14	7561	genome.wustl.edu	37	19	19822955	19822955	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021030.2	-1	reviewed	p.R379*	0.010	254	0%	152	43.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF93	81931	genome.wustl.edu	37	19	20045516	20045516	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031218.3	+1	validated	p.K584	1.000	278	0%	180	15%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF93	81931	genome.wustl.edu	37	19	20045605	20045605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031218.3	+1	validated	p.I614T	0.862	166	0%	129	29.5%	-	-	benign(0.037)	tolerated(0.11)	neutral(0.274)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF682	91120	genome.wustl.edu	37	19	20117061	20117061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033196.2	-1	validated	p.R417I	0.997	223	0%	166	16.3%	-	-	probably_damaging(0.999)	tolerated(0.42)	deleterious(0.504)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF90	7643	genome.wustl.edu	37	19	20229797	20229797	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007138.1	+1	validated	p.E478	1.000	232	0%	121	29.8%	-	-	-	-	-	superfamily_SSF57667
ZNF486	90649	genome.wustl.edu	37	19	20308458	20308458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052852.2	+1	provisional	p.K313N	0.964	214	0%	108	37%	-	-	possibly_damaging(0.627)	deleterious(0.05)	deleterious(0.564)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000213985	0	genome.wustl.edu	37	19	20369998	20369998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397155	+1	known	p.R320Q	1.000	401	0.2%	236	28%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ZNF737	100129842	genome.wustl.edu	37	19	20727496	20727496	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343624.1	-1	model	p.G505*	1.000	166	0%	106	40.6%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF737	100129842	genome.wustl.edu	37	19	20727507	20727507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343624.1	-1	model	p.R501I	1.000	173	0%	118	30.5%	-	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF626	199777	genome.wustl.edu	37	19	20807611	20807611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076675.2	-1	validated	p.T358A	0.003	303	0%	164	44.5%	-	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF85	7639	genome.wustl.edu	37	19	21131994	21131994	+	Missense_Mutation	SNP	C	C	T	rs150048393	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003429.3	+1	validated	p.T225M	1.000	89	0%	57	40.4%	-	-	possibly_damaging(0.854)	deleterious(0.03)	deleterious(0.694)	superfamily_C2H2 and C2HC zinc fingers
ZNF430	80264	genome.wustl.edu	37	19	21239788	21239788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025189.3	+1	validated	p.R225I	0.392	186	0%	99	34.3%	-	-	benign(0.009)	tolerated(0.09)	neutral(0.297)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF430	80264	genome.wustl.edu	37	19	21240040	21240040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025189.3	+1	validated	p.R309I	0.837	51	0%	52	38.5%	-	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF714	148206	genome.wustl.edu	37	19	21300218	21300218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000291770	+1	known	p.H250N	0.998	104	0%	44	31.8%	-	-	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF708	7562	genome.wustl.edu	37	19	21477132	21477132	+	Silent	SNP	C	C	T	rs191052060	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021269.2	-1	validated	p.T212	0.000	180	0%	122	35.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF493	284443	genome.wustl.edu	37	19	21606807	21606807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076678.2	+1	validated	p.T449N	0.001	52	0%	44	11.4%	-	-	benign(0.154)	tolerated(0.4)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000196686	0	genome.wustl.edu	37	19	21607940	21607940	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341265	-1	novel	NULL	0.000	33	0%	20	55%	-	-	-	-	-	-
ZNF208	7757	genome.wustl.edu	37	19	22154338	22154338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.E1038D	0.976	44	0%	37	35.1%	-	-	possibly_damaging(0.76)	deleterious(0.01)	deleterious(0.687)	superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157186	22157186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.T217N	0.000	151	0%	85	30.6%	-	-	benign(0.095)	tolerated(0.25)	neutral(0.044)	superfamily_SSF57667
ZNF257	113835	genome.wustl.edu	37	19	22271049	22271049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033468.2	+1	provisional	p.R166I	0.000	286	0%	138	33.3%	-	-	benign(0.056)	tolerated(0.48)	neutral(0.014)	superfamily_C2H2 and C2HC zinc fingers
ZNF257	113835	genome.wustl.edu	37	19	22271475	22271475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033468.2	+1	provisional	p.R308K	1.000	154	0%	95	34.7%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF676	163223	genome.wustl.edu	37	19	22364334	22364334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001411.2	-1	provisional	p.S62Y	0.001	299	0%	143	32.9%	-	-	possibly_damaging(0.595)	tolerated(0.36)	neutral(0.226)	NULL
LOC100130518	100130518	genome.wustl.edu	37	19	22487557	22487557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719773.2	+1	model	p.K103N	0.053	602	0%	225	28.4%	-	-	possibly_damaging(0.45)	tolerated(0.28)	neutral(0.179)	NULL
LOC100287226	100287226	genome.wustl.edu	37	19	22497601	22497601	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.K328T	0.104	90	0%	48	39.6%	-	-	benign(0.313)	tolerated(0.09)	neutral(0.394)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22499121	22499121	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.E835*	0.110	134	1.5%	97	40.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574340	22574340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098626.1	-1	validated	p.R566I	0.129	511	0%	256	25%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
ZNF492	57615	genome.wustl.edu	37	19	22846953	22846953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020855.2	+1	validated	p.R161I	0.902	254	0%	124	33.1%	-	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22941736	22941736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080409.1	-1	provisional	p.F234L	0.000	150	0%	100	50%	-	-	benign(0.167)	tolerated(0.67)	neutral(0.017)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22942300	22942300	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080409.1	-1	provisional	p.W158*	0.022	409	0%	186	12.9%	-	-	-	-	-	NULL
ZNF99	7652	genome.wustl.edu	37	19	22942434	22942434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080409.1	-1	provisional	p.D114Y	0.041	334	0%	129	38.8%	-	-	benign(0.108)	tolerated(0.3)	neutral(0.037)	NULL
ZNF728	388523	genome.wustl.edu	37	19	23159664	23159664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726961.1	-1	model	p.N159D	0.000	380	0%	203	31.5%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF724P	440519	genome.wustl.edu	37	19	23406095	23406095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418100	-1	known	p.A318T	0.085	43	0%	39	33.3%	-	-	benign(0.094)	tolerated(0.1)	neutral(0.293)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23836194	23836194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138330.2	-1	validated	p.G514D	1.000	170	0%	102	43.1%	-	-	benign(0.128)	tolerated(0.13)	neutral(0.263)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23837076	23837076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138330.2	-1	validated	p.R220I	1.000	180	0%	126	38.9%	-	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23837160	23837160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138330.2	-1	validated	p.R192I	0.293	289	0%	162	35.2%	-	-	benign(0.025)	tolerated(0.22)	neutral(0.043)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF681	148213	genome.wustl.edu	37	19	23926802	23926802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138286.2	-1	validated	p.R517Q	0.000	93	0%	62	40.3%	-	-	benign(0.039)	tolerated(0.82)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF681	148213	genome.wustl.edu	37	19	23937634	23937634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138286.2	-1	validated	p.E73K	0.241	667	0%	309	39.8%	-	-	benign(0)	tolerated(1)	-	NULL
ZNF726	730087	genome.wustl.edu	37	19	24115906	24115906	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322487	+1	known	p.R330	0.096	92	0%	73	30.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POP4	10775	genome.wustl.edu	37	19	30099571	30099571	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006627.2	+1	reviewed	p.I5	0.989	375	0%	179	34.1%	-	-	-	-	-	NULL
POP4	10775	genome.wustl.edu	37	19	30106209	30106209	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006627.2	+1	reviewed	p.I195	1.000	186	0%	99	37.4%	-	-	-	-	-	HMMPfam_UPF0086,HMMSmart_SM00538,superfamily_RNase P subunit p29-like
CCNE1	898	genome.wustl.edu	37	19	30311662	30311662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001238.1	+1	reviewed	p.F172L	1.000	273	0%	157	37.6%	-	-	possibly_damaging(0.482)	deleterious(0.01)	deleterious(0.566)	HMMSmart_SM00385,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin-like
ZNF536	9745	genome.wustl.edu	37	19	30934835	30934835	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014717.1	+1	provisional	p.D122	0.837	24	0%	22	31.8%	-	-	-	-	-	NULL
ZNF536	9745	genome.wustl.edu	37	19	30935960	30935960	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014717.1	+1	provisional	p.P497	0.023	30	0%	16	50%	-	-	-	-	-	NULL
ZNF536	9745	genome.wustl.edu	37	19	31039231	31039231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014717.1	+1	provisional	p.R902K	1.000	146	0%	77	40.3%	-	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	NULL
ZNF536	9745	genome.wustl.edu	37	19	31039865	31039865	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014717.1	+1	provisional	p.K1113	1.000	192	0%	119	11.8%	-	-	-	-	-	NULL
ZNF536	9745	genome.wustl.edu	37	19	31040142	31040142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014717.1	+1	provisional	p.G1206R	0.947	51	0%	22	22.7%	-	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31767929	31767929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.M924V	1.000	108	0%	79	44.3%	-	-	benign(0.258)	deleterious(0.02)	neutral(0.410)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ZNF507	22847	genome.wustl.edu	37	19	32845207	32845207	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136156.1	+1	validated	p.R491*	0.261	130	0%	78	41%	-	-	-	-	-	NULL
ZNF507	22847	genome.wustl.edu	37	19	32845641	32845641	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136156.1	+1	validated	p.P635	0.000	136	0%	92	41.3%	-	-	-	-	-	NULL
DPY19L3	147991	genome.wustl.edu	37	19	32955652	32955652	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207325.2	+1	validated	p.S526A	0.996	388	0%	191	37.2%	-	-	benign(0.002)	tolerated(0.39)	neutral(0.016)	HMMPfam_DUF2211
ANKRD27	84079	genome.wustl.edu	37	19	33093025	33093025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.K888I	1.000	214	0%	142	38%	-	-	possibly_damaging(0.91)	deleterious(0.01)	deleterious(0.768)	superfamily_ANK
ANKRD27	84079	genome.wustl.edu	37	19	33113501	33113501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.D552N	1.000	149	0%	100	39%	-	-	possibly_damaging(0.492)	tolerated(0.19)	neutral(0.214)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CEP89	84902	genome.wustl.edu	37	19	33424435	33424435	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032816.3	-1	validated	p.E270*	0.992	963	0%	445	35.5%	-	-	-	-	-	NULL
WDR88	126248	genome.wustl.edu	37	19	33647373	33647373	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173479.3	+1	validated	p.R308*	1.000	188	0%	133	10.5%	-	-	-	-	-	superfamily_WD40 repeat-like
LRP3	4037	genome.wustl.edu	37	19	33696911	33696911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002333.3	+1	validated	p.G412D	1.000	11	0%	10	50%	-	-	benign(0.011)	tolerated(0.57)	neutral(0.007)	HMMSmart_LDLa
PEPD	5184	genome.wustl.edu	37	19	33892769	33892769	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000285.3	-1	reviewed	p.F275	0.962	99	0%	62	35.5%	-	-	-	-	-	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
LSM14A	26065	genome.wustl.edu	37	19	34712608	34712608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114093.1	+1	validated	p.R445C	1.000	345	0%	175	33.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA0355	9710	genome.wustl.edu	37	19	34830782	34830782	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014686.3	+1	validated	p.E458*	1.000	212	0%	129	40.3%	-	-	-	-	-	NULL
GPI	2821	genome.wustl.edu	37	19	34868784	34868784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000175.3	+1	reviewed	p.K211E	1.000	190	0%	128	35.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGI,superfamily_SSF53697
UBA2	10054	genome.wustl.edu	37	19	34929585	34929585	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005499.2	+1	validated	p.P165	0.979	440	0.2%	237	35%	-	-	-	-	-	superfamily_MoeB,HMMPfam_UBA_e1_thiolCys
ZNF302	55900	genome.wustl.edu	37	19	35175702	35175702	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012320.1	+1	validated	p.E254*	1.000	354	0%	197	34.5%	-	-	-	-	-	superfamily_SSF57667
ZNF181	339318	genome.wustl.edu	37	19	35232280	35232280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029997.3	+1	validated	p.R332C	0.001	267	0%	157	29.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF181	339318	genome.wustl.edu	37	19	35232476	35232476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029997.3	+1	validated	p.R397I	0.994	226	0%	145	32.4%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35450392	35450392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175872.4	-1	validated	p.E123K	0.005	168	0%	108	40.7%	-	-	benign(0)	tolerated(1)	-	NULL
SCN1B	6324	genome.wustl.edu	37	19	35523557	35523557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199037.3	+1	reviewed	p.E56K	0.989	100	0%	68	48.5%	-	-	possibly_damaging(0.806)	deleterious(0.01)	deleterious(0.709)	HMMPfam_ig,superfamily_SSF48726
SCN1B	6324	genome.wustl.edu	37	19	35524420	35524420	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199037.3	+1	reviewed	p.N75	0.983	164	0%	85	43.5%	-	-	-	-	-	HMMPfam_ig,superfamily_SSF48726
LGI4	163175	genome.wustl.edu	37	19	35625474	35625474	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139284.2	-1	validated	p.S37	0.359	54	0%	36	11.1%	-	-	-	-	-	NULL
FXYD5	53827	genome.wustl.edu	37	19	35648396	35648396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014164.5	+1	reviewed	p.R45Q	0.000	201	0%	118	34.7%	-	-	benign(0.004)	tolerated(0.3)	neutral(0.029)	NULL
FXYD5	53827	genome.wustl.edu	37	19	35654985	35654985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392217	+1	known	p.Q2H	0.002	169	0%	101	42.6%	-	-	benign(0.016)	-	-	NULL
KRTDAP	388533	genome.wustl.edu	37	19	35979725	35979725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207392.1	-1	provisional	p.E35D	0.000	104	0%	67	35.8%	-	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
ATP4A	495	genome.wustl.edu	37	19	36041820	36041820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000704.2	-1	reviewed	p.W999R	1.000	142	0%	89	34.8%	-	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
HAUS5	23354	genome.wustl.edu	37	19	36104782	36104782	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015302.1	+1	validated	p.K58	1.000	215	0%	147	34%	-	-	-	-	-	NULL
RBM42	79171	genome.wustl.edu	37	19	36125187	36125187	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024321.3	+1	provisional	p.K349	1.000	90	0%	40	27.5%	-	-	-	-	-	superfamily_RNA-binding domain RBD
ZBTB32	27033	genome.wustl.edu	37	19	36205924	36205924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014383.1	+1	provisional	p.E132D	0.025	117	0%	46	32.6%	-	-	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
MLL4	9757	genome.wustl.edu	37	19	36223430	36223430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.A1994T	1.000	85	0%	65	29.2%	-	-	possibly_damaging(0.888)	-	-	NULL
NPHS1	4868	genome.wustl.edu	37	19	36321813	36321813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004646.3	-1	reviewed	p.Y1176C	1.000	143	0%	105	28.6%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
NPHS1	4868	genome.wustl.edu	37	19	36337010	36337010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004646.3	-1	reviewed	p.F509L	1.000	18	0%	12	50%	-	-	benign(0.004)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
ALKBH6	84964	genome.wustl.edu	37	19	36503928	36503928	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032878.3	-1	validated	p.R68*	1.000	348	0%	151	32.5%	-	-	-	-	-	NULL
WDR62	284403	genome.wustl.edu	37	19	36558828	36558828	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.A266	0.675	187	0%	134	34.3%	-	-	-	-	-	superfamily_WD40 repeat-like
WDR62	284403	genome.wustl.edu	37	19	36595572	36595572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.R1436C	0.718	104	0%	62	38.7%	-	-	possibly_damaging(0.838)	deleterious(0.01)	deleterious(0.726)	NULL
CAPNS1	826	genome.wustl.edu	37	19	36633615	36633615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003962.1	+1	reviewed	p.R102Q	1.000	218	0%	170	37.6%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_SSF47473
ZFP14	57677	genome.wustl.edu	37	19	36831728	36831728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020917.1	-1	provisional	p.H334N	1.000	272	0%	182	15.4%	-	-	possibly_damaging(0.767)	deleterious(0)	deleterious(0.729)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP82	284406	genome.wustl.edu	37	19	36883749	36883749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133466.2	-1	provisional	p.R498K	1.000	219	0%	145	24.1%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF529	57711	genome.wustl.edu	37	19	37038086	37038086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145649.1	-1	validated	p.F458L	0.133	358	0%	211	37.9%	-	-	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF529	57711	genome.wustl.edu	37	19	37045663	37045663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145649.1	-1	validated	p.F48L	1.000	356	0%	175	38.9%	-	-	benign(0.067)	deleterious(0.04)	neutral(0.353)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF461	92283	genome.wustl.edu	37	19	37130519	37130519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153257.2	-1	validated	p.D243G	0.882	325	0%	190	30.5%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_C2H2 and C2HC zinc fingers
ZNF790	388536	genome.wustl.edu	37	19	37309595	37309595	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206894.2	-1	validated	p.R551*	0.002	210	0%	134	33.6%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF829	374899	genome.wustl.edu	37	19	37398889	37398889	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037232.3	-1	validated	p.L87	1.000	615	0%	287	31%	-	-	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF568	374900	genome.wustl.edu	37	19	37441780	37441780	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198539.2	+1	validated	p.L575	0.006	233	0%	129	36.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF420	147923	genome.wustl.edu	37	19	37619395	37619395	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144689.3	+1	provisional	p.K501T	1.000	219	0%	141	41.1%	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	superfamily_SSF57667
HKR1	284459	genome.wustl.edu	37	19	37854097	37854097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181786.2	+1	provisional	p.K467T	0.998	267	0.4%	151	33.8%	-	-	possibly_damaging(0.669)	deleterious(0)	deleterious(0.681)	superfamily_C2H2 and C2HC zinc fingers
ZNF569	148266	genome.wustl.edu	37	19	37903658	37903658	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152484.2	-1	validated	p.F634	0.118	252	0.4%	149	46.3%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF569	148266	genome.wustl.edu	37	19	37903738	37903738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152484.2	-1	validated	p.C608R	1.000	381	0%	211	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF570	148268	genome.wustl.edu	37	19	37975539	37975539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144694.1	+1	provisional	p.F339V	0.978	235	0%	165	40.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38102515	38102515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152606.3	+1	validated	p.R112C	0.000	220	0%	70	22.9%	-	-	possibly_damaging(0.763)	tolerated(0.06)	deleterious(0.605)	NULL
ZNF540	163255	genome.wustl.edu	37	19	38103473	38103473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152606.3	+1	validated	p.R431I	1.000	240	0%	135	32.6%	-	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38189290	38189290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032689.4	-1	validated	p.R581Q	0.291	115	0%	91	34.1%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WDR87	83889	genome.wustl.edu	37	19	38375886	38375886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.K2770Q	0.638	75	0%	46	21.7%	-	-	unknown(0)	-	-	NULL
WDR87	83889	genome.wustl.edu	37	19	38378473	38378473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.E1907D	0.000	763	0%	399	36.1%	-	-	probably_damaging(0.984)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38378710	38378710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.K1828N	0.000	718	0.1%	438	34%	-	-	possibly_damaging(0.63)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38379015	38379015	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.E1727*	0.000	768	0.3%	366	35.2%	-	-	-	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38379226	38379226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.E1656D	0.000	589	0%	333	39.3%	-	-	probably_damaging(0.967)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38380255	38380255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.E1313D	0.002	377	0%	206	41.3%	-	-	possibly_damaging(0.945)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
CATSPERG	57828	genome.wustl.edu	37	19	38857915	38857915	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021185.4	+1	validated	p.N911	0.000	247	0%	160	30%	-	-	-	-	-	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38858734	38858734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021185.4	+1	validated	p.D993Y	0.079	418	0%	230	34.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM98C	147965	genome.wustl.edu	37	19	38899467	38899467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174905.3	+1	validated	p.R332Q	1.000	126	0%	49	38.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF2465
RYR1	6261	genome.wustl.edu	37	19	38956915	38956915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.R1019W	1.000	26	0%	20	35%	-	-	probably_damaging(0.999)	-	-	HMMPfam_RyR
RYR1	6261	genome.wustl.edu	37	19	38979991	38979991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.K1908Q	0.521	355	0%	171	25.7%	-	-	benign(0.24)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38987589	38987589	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.E2296*	1.000	37	0%	32	28.1%	-	-	-	-	-	HMMPfam_RYDR_ITPR
RYR1	6261	genome.wustl.edu	37	19	38993258	38993258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.A2576T	1.000	53	0%	35	42.9%	-	-	probably_damaging(0.967)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38996982	38996982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.D2861N	1.000	206	0%	115	11.3%	-	-	probably_damaging(0.999)	-	-	HMMPfam_RyR
RYR1	6261	genome.wustl.edu	37	19	39002230	39002230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.R3051H	1.000	470	0.2%	332	40.4%	-	-	possibly_damaging(0.939)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39019632	39019632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.E3692D	0.997	174	0%	72	30.6%	-	-	benign(0.013)	-	-	NULL
MAP4K1	11184	genome.wustl.edu	37	19	39103297	39103297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007181.4	-1	validated	p.E207K	1.000	45	0%	33	39.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ACTN4	81	genome.wustl.edu	37	19	39200067	39200067	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004924.3	+1	reviewed	p.F228	0.958	215	0%	114	13.2%	-	-	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
CAPN12	147968	genome.wustl.edu	37	19	39228920	39228920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144691.3	-1	validated	p.E320K	1.000	166	0%	119	30.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
LGALS4	3960	genome.wustl.edu	37	19	39292754	39292754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006149.3	-1	reviewed	p.L235M	0.980	160	0%	102	47.1%	-	-	possibly_damaging(0.871)	deleterious(0.02)	deleterious(0.722)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
LGALS4	3960	genome.wustl.edu	37	19	39293005	39293005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006149.3	-1	reviewed	p.A204T	0.000	299	0%	197	18.3%	-	-	benign(0.015)	deleterious(0.03)	neutral(0.365)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
SARS2	54938	genome.wustl.edu	37	19	39421175	39421175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017827.3	-1	reviewed	p.E68K	0.996	25	0%	18	22.2%	-	-	possibly_damaging(0.784)	deleterious(0.01)	deleterious(0.699)	superfamily_tRNA_binding_arm,HMMPfam_Seryl_tRNA_N
MED29	55588	genome.wustl.edu	37	19	39884244	39884244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017592.1	+1	provisional	p.F130L	1.000	220	0%	119	29.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PLEKHG2	64857	genome.wustl.edu	37	19	39912792	39912792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022835.2	+1	validated	p.S514Y	0.360	152	0%	102	48%	-	-	possibly_damaging(0.462)	deleterious(0.04)	deleterious(0.500)	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39949469	39949469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111020.2	+1	validated	p.D111N	1.000	378	0%	215	33%	-	-	benign(0.103)	tolerated(0.23)	neutral(0.050)	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39963104	39963104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111020.2	+1	validated	p.I669T	1.000	144	0%	86	33.7%	-	-	possibly_damaging(0.852)	deleterious(0.04)	deleterious(0.676)	NULL
CLC	1178	genome.wustl.edu	37	19	40224989	40224989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001828.4	-1	reviewed	p.K79N	0.000	354	0%	238	14.7%	-	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
DYRK1B	9149	genome.wustl.edu	37	19	40319120	40319120	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004714.1	-1	reviewed	p.G208	0.190	204	0%	121	43%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FCGBP	8857	genome.wustl.edu	37	19	40392628	40392628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.D2626N	0.647	120	0.8%	97	29.9%	-	-	unknown(0)	tolerated(0.34)	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40408594	40408594	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.F1415	0.895	168	0%	149	31.5%	-	-	-	-	-	NULL
PSMC4	5704	genome.wustl.edu	37	19	40486588	40486588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006503.2	+1	reviewed	p.K369N	1.000	431	0%	205	33.2%	-	-	possibly_damaging(0.89)	deleterious(0.02)	deleterious(0.733)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF780B	163131	genome.wustl.edu	37	19	40540616	40540616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005851.2	-1	validated	p.R717Q	0.000	214	0%	136	28.7%	-	-	probably_damaging(0.995)	tolerated(0.67)	neutral(0.460)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAP3K10	4294	genome.wustl.edu	37	19	40711848	40711848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002446.3	+1	reviewed	p.R407W	1.000	36	0%	21	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LTBP4	8425	genome.wustl.edu	37	19	41122863	41122863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000308370	+1	known	p.S1028P	1.000	74	0%	59	35.6%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
LTBP4	8425	genome.wustl.edu	37	19	41133686	41133686	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042544.1	+1	reviewed	p.A1548V	0.997	12	0%	21	57.1%	-	-	-	-	-	NULL
ITPKC	80271	genome.wustl.edu	37	19	41223539	41223539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025194.2	+1	reviewed	p.P167A	0.067	99	0%	66	33.3%	-	-	possibly_damaging(0.454)	deleterious(0.02)	deleterious(0.531)	NULL
RAB4B	53916	genome.wustl.edu	37	19	41286315	41286315	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016154.3	+1	validated	p.I41	0.808	495	0%	243	39.5%	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CYP2A7	1549	genome.wustl.edu	37	19	41384682	41384682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000764.2	-1	reviewed	p.L272I	0.999	382	0%	269	27.1%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_p450,superfamily_Cytochrome_P450
ENSG00000198251	0	genome.wustl.edu	37	19	41415154	41415154	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412510	-1	known	p.F152I	1.000	311	0%	139	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
CYP2B6	1555	genome.wustl.edu	37	19	41510289	41510289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000767.4	+1	reviewed	p.S141N	0.000	493	0%	216	36.6%	-	-	benign(0.106)	tolerated(0.06)	neutral(0.331)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2B6	1555	genome.wustl.edu	37	19	41515901	41515901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000767.4	+1	reviewed	p.E275D	0.991	221	0%	158	35.4%	-	-	benign(0.019)	tolerated(0.06)	neutral(0.324)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2A13	1553	genome.wustl.edu	37	19	41596373	41596373	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000766.3	+1	reviewed	p.V186	1.000	582	0%	314	32.2%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
BCKDHA	593	genome.wustl.edu	37	19	41916646	41916646	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000709.3	+1	reviewed	p.N71	1.000	135	0%	71	35.2%	-	-	-	-	-	NULL
ATP5SL	55101	genome.wustl.edu	37	19	41944155	41944155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018035.2	-1	validated	p.Q61H	0.001	259	0%	184	17.4%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
CEACAM4	1089	genome.wustl.edu	37	19	42128109	42128109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001817.2	-1	validated	p.V153I	0.003	95	0%	60	31.7%	-	-	benign(0.035)	tolerated(1)	neutral(0.002)	NULL
CEACAM5	1048	genome.wustl.edu	37	19	42213831	42213831	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398599	+1	known	p.D96N	0.001	804	0%	412	36.2%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CEACAM5	1048	genome.wustl.edu	37	19	42224889	42224889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004363.2	+1	validated	p.S607P	0.001	284	0%	202	25.2%	-	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CEACAM6	4680	genome.wustl.edu	37	19	42260687	42260687	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002483.4	+1	validated	p.Y82D	0.010	694	0%	511	39.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
DMRTC2	63946	genome.wustl.edu	37	19	42353013	42353013	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040283.1	+1	validated	p.E200*	1.000	195	0%	136	40.4%	-	-	-	-	-	NULL
CIC	23152	genome.wustl.edu	37	19	42792017	42792017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015125.3	+1	validated	p.R274Q	1.000	34	0%	31	29%	-	-	possibly_damaging(0.772)	deleterious(0.02)	deleterious(0.670)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42855870	42855870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.E953K	1.000	60	0%	49	32.7%	-	-	possibly_damaging(0.601)	tolerated(0.38)	neutral(0.225)	HMMPfam_PSI,HMMSmart_PSI
MEGF8	1954	genome.wustl.edu	37	19	42866668	42866668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.E1926K	1.000	41	0%	40	57.5%	-	-	probably_damaging(0.995)	tolerated(0.85)	neutral(0.458)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42867312	42867312	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.C1990	1.000	436	0.2%	285	38.9%	-	-	-	-	-	NULL
CEACAM1	634	genome.wustl.edu	37	19	43023107	43023107	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001712.4	-1	reviewed	p.N413	0.002	533	0%	285	35.1%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
PSG8	440533	genome.wustl.edu	37	19	43259169	43259169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182707.2	-1	validated	p.R320H	0.000	783	0%	395	34.9%	-	-	benign(0.016)	tolerated(0.3)	neutral(0.029)	HMMSmart_IG,superfamily_SSF48726
PSG1	5669	genome.wustl.edu	37	19	43348520	43348520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000449000	-1	known	p.E412K	0.000	576	0.2%	330	37.9%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
PSG1	5669	genome.wustl.edu	37	19	43373099	43373099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006905.2	-1	validated	p.S266I	0.000	900	0%	457	33.5%	-	-	benign(0.122)	deleterious(0)	neutral(0.455)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSG1	5669	genome.wustl.edu	37	19	43376052	43376052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006905.2	-1	validated	p.S192R	0.007	677	0%	370	38.9%	-	-	benign(0)	tolerated(1)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSG9	5678	genome.wustl.edu	37	19	43766245	43766245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002784.3	-1	validated	p.R159M	0.006	666	0.2%	333	33.9%	-	-	benign(0.023)	tolerated(0.15)	neutral(0.242)	HMMSmart_SM00409,superfamily_Immunoglobulin
CD177	57126	genome.wustl.edu	37	19	43858504	43858504	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457794	+1	known	p.L113	0.000	64	0%	48	22.9%	-	-	-	-	-	NULL
TEX101	83639	genome.wustl.edu	37	19	43922388	43922388	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031451.4	+1	validated	p.I215L	0.000	170	0%	161	30.4%	-	-	benign(0.393)	tolerated(0.45)	neutral(0.138)	HMMPfam_UPAR_LY6
LYPD3	27076	genome.wustl.edu	37	19	43965843	43965843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014400.2	-1	validated	p.R234Q	0.000	372	0%	207	41.5%	-	-	benign(0.392)	deleterious(0)	deleterious(0.570)	NULL
ETHE1	23474	genome.wustl.edu	37	19	44011055	44011055	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014297.3	-1	reviewed	e7-1	1.000	104	0%	54	29.6%	-	-	-	-	-	-
SRRM5	100170229	genome.wustl.edu	37	19	44116797	44116797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145641.1	+1	validated	p.R175Q	0.004	148	0%	78	35.9%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
CADM4	199731	genome.wustl.edu	37	19	44130337	44130337	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145296.1	-1	validated	p.A201	0.269	189	0%	98	33.7%	-	-	-	-	-	HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726
PLAUR	5329	genome.wustl.edu	37	19	44160757	44160757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002659.2	-1	reviewed	p.E116K	0.062	179	0%	118	50.8%	-	-	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like
ZNF283	284349	genome.wustl.edu	37	19	44351928	44351928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181845.1	+1	validated	p.R392Q	0.286	308	0%	142	40.8%	-	-	possibly_damaging(0.809)	tolerated(0.7)	neutral(0.306)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF283	284349	genome.wustl.edu	37	19	44352264	44352264	+	Missense_Mutation	SNP	G	G	A	rs191317922	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181845.1	+1	validated	p.R504Q	0.004	323	0%	189	37%	-	-	benign(0.148)	tolerated(0.72)	neutral(0.014)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF283	284349	genome.wustl.edu	37	19	44352357	44352357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181845.1	+1	validated	p.R535I	1.000	255	0%	173	43.9%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF221	7638	genome.wustl.edu	37	19	44470790	44470790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013359.2	+1	validated	p.R379Q	0.000	296	0%	145	32.4%	-	-	benign(0.054)	tolerated(0.1)	neutral(0.290)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF284	342909	genome.wustl.edu	37	19	44591153	44591153	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037813.2	+1	provisional	p.E508*	0.997	225	0%	103	35.9%	-	-	-	-	-	superfamily_SSF57667
ZNF224	7767	genome.wustl.edu	37	19	44605025	44605025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013398.2	+1	validated	p.Q29H	0.999	701	0%	441	25.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF225	7768	genome.wustl.edu	37	19	44636174	44636174	+	Silent	SNP	G	G	A	rs145291466	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013362.2	+1	validated	p.S469	0.000	286	0%	154	36.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF226	7769	genome.wustl.edu	37	19	44677077	44677077	+	Silent	SNP	G	G	A	rs143030063	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032372.1	+1	validated	p.T69	0.072	324	0%	166	30.7%	-	-	-	-	-	NULL
ZNF226	7769	genome.wustl.edu	37	19	44681277	44681277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032372.1	+1	validated	p.G621E	1.000	302	0%	160	27.5%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF226	7769	genome.wustl.edu	37	19	44681371	44681371	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032372.1	+1	validated	p.F652	0.934	333	0.3%	179	22.9%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP112	7771	genome.wustl.edu	37	19	44833386	44833386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083335.1	-1	validated	p.E314D	0.001	233	0%	163	30.7%	-	-	benign(0.013)	tolerated(0.4)	neutral(0.017)	superfamily_C2H2 and C2HC zinc fingers
ZNF285	26974	genome.wustl.edu	37	19	44891809	44891809	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152354.3	-1	validated	p.G200*	0.044	310	0%	180	38.9%	-	-	-	-	-	NULL
ZNF229	7772	genome.wustl.edu	37	19	44933584	44933584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014518.2	-1	validated	p.E458K	0.997	132	0%	106	10.4%	-	-	probably_damaging(0.962)	deleterious(0.04)	deleterious(0.754)	superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44980798	44980798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013256.3	-1	validated	p.E634*	0.049	277	0%	209	31.1%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981100	44981100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013256.3	-1	validated	p.S533N	0.088	245	0%	180	36.1%	-	-	benign(0.036)	tolerated(0.16)	neutral(0.061)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981664	44981664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013256.3	-1	validated	p.R345I	0.992	142	0%	86	26.7%	-	-	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981975	44981975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013256.3	-1	validated	p.E241D	0.000	108	0%	74	36.5%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
PVRL2	5819	genome.wustl.edu	37	19	45368670	45368670	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042724.1	+1	reviewed	p.A77	0.000	65	0%	54	33.3%	-	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CLPTM1	1209	genome.wustl.edu	37	19	45491409	45491409	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001294.1	+1	provisional	p.F370	0.994	203	0%	166	37.3%	-	-	-	-	-	HMMPfam_CLPTM1
ZNF296	162979	genome.wustl.edu	37	19	45574967	45574967	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145288.1	-1	provisional	p.P440	0.005	59	0%	46	41.3%	-	-	-	-	-	NULL
ZNF296	162979	genome.wustl.edu	37	19	45575141	45575141	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145288.1	-1	provisional	p.R382	0.000	72	0%	59	47.5%	-	-	-	-	-	NULL
ERCC1	2067	genome.wustl.edu	37	19	45912975	45912975	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001983.3	-1	reviewed	p.R284	1.000	208	0%	139	35.3%	-	-	-	-	-	HMMPfam_HHH,HMMSmart_HhH1,superfamily_RuvA_2_like
GIPR	2696	genome.wustl.edu	37	19	46176210	46176210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000164.2	+1	validated	p.L128M	0.999	321	0%	216	35.2%	-	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	superfamily_Hormone receptor domain (HRM Pfam 02793)
DMPK	1760	genome.wustl.edu	37	19	46278282	46278282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081563.1	-1	reviewed	p.S396L	0.998	48	0%	37	35.1%	-	-	probably_damaging(0.993)	tolerated(0.22)	deleterious(0.492)	HMMSmart_SM00133,HMMPfam_Pkinase_C
NOVA2	4858	genome.wustl.edu	37	19	46443262	46443262	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002516.2	-1	validated	p.G446	0.989	70	0%	65	33.8%	-	-	-	-	-	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
CCDC61	729440	genome.wustl.edu	37	19	46511533	46511533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080402.1	+1	provisional	p.E232D	0.026	76	0%	39	25.6%	-	-	possibly_damaging(0.892)	deleterious(0.04)	deleterious(0.700)	NULL
IGFL1	374918	genome.wustl.edu	37	19	46733387	46733387	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198541.1	+1	provisional	p.I16	0.000	493	0%	223	12.1%	-	-	-	-	-	NULL
HIF3A	64344	genome.wustl.edu	37	19	46825082	46825082	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152795.2	+1	reviewed	p.S398	0.993	55	0%	50	42%	-	-	-	-	-	NULL
PPP5C	5536	genome.wustl.edu	37	19	46887078	46887078	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006247.2	+1	provisional	p.F247	1.000	216	0%	127	35.4%	-	-	-	-	-	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
ARHGAP35	2909	genome.wustl.edu	37	19	47423781	47423781	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.R617*	1.000	133	0%	84	21.4%	-	-	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47424529	47424529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.S866Y	1.000	316	0.3%	255	25.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47424921	47424921	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.R997*	1.000	75	0%	47	10.6%	-	-	-	-	-	NULL
ZC3H4	23211	genome.wustl.edu	37	19	47593274	47593274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015168.1	-1	validated	p.K222R	1.000	286	0%	233	35.6%	-	-	unknown(0)	deleterious(0.02)	-	NULL
SAE1	10055	genome.wustl.edu	37	19	47712515	47712515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413379	+1	known	p.R278I	0.000	266	0%	172	30.8%	-	-	benign(0.007)	-	-	NULL
KPTN	11133	genome.wustl.edu	37	19	47978759	47978759	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007059.2	-1	validated	p.R409*	0.967	156	0%	99	29.3%	-	-	-	-	-	NULL
ZNF541	84215	genome.wustl.edu	37	19	48044167	48044167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101419.1	-1	validated	p.E815D	0.916	168	0%	115	33%	-	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
EHD2	30846	genome.wustl.edu	37	19	48239729	48239729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014601.3	+1	reviewed	p.A340V	0.991	172	0%	114	36%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
TPRX1	284355	genome.wustl.edu	37	19	48305782	48305782	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198479.2	-1	validated	p.P162	0.001	473	0%	308	41.6%	-	-	-	-	-	NULL
CRX	1406	genome.wustl.edu	37	19	48342694	48342694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000554.4	+1	reviewed	p.S124P	0.062	53	0%	37	32.4%	-	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	NULL
SULT2A1	6822	genome.wustl.edu	37	19	48389466	48389466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003167.3	-1	reviewed	p.G17S	0.000	375	0%	219	19.6%	-	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PLA2G4C	8605	genome.wustl.edu	37	19	48556310	48556310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003706.2	-1	reviewed	p.K508N	0.008	319	0%	226	33.6%	-	-	probably_damaging(0.998)	tolerated(0.27)	deleterious(0.508)	superfamily_Acyl_Trfase/lysoPlipase
PLA2G4C	8605	genome.wustl.edu	37	19	48608660	48608660	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003706.2	-1	reviewed	p.K17T	0.247	260	0%	144	39.6%	-	-	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
LIG1	3978	genome.wustl.edu	37	19	48631238	48631238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000234.1	-1	reviewed	p.E621K	1.000	301	0%	209	34.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_ligase_A_M,superfamily_DNA ligase/mRNA capping enzyme catalytic domain
CARD8	22900	genome.wustl.edu	37	19	48733748	48733748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014959.3	-1	reviewed	p.E222K	0.003	324	0%	133	30.1%	-	-	possibly_damaging(0.896)	tolerated(0.08)	deleterious(0.653)	NULL
CCDC114	93233	genome.wustl.edu	37	19	48800924	48800924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144577.3	-1	validated	p.E465K	0.922	114	0%	78	39.7%	-	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
CCDC114	93233	genome.wustl.edu	37	19	48806906	48806906	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144577.3	-1	validated	e7+1	0.993	254	0%	134	29.1%	-	-	-	-	-	-
KDELR1	10945	genome.wustl.edu	37	19	48892843	48892843	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006801.2	-1	reviewed	p.A106	0.056	133	0%	78	37.2%	-	-	-	-	-	HMMPfam_ER_lumen_recept
BAX	581	genome.wustl.edu	37	19	49459487	49459487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004324.3	+1	reviewed	p.R89Q	0.947	198	0%	140	35.7%	-	-	probably_damaging(0.964)	tolerated(0.86)	neutral(0.407)	HMMPfam_Bcl-2,HMMSmart_BCL,superfamily_SSF56854
HRC	3270	genome.wustl.edu	37	19	49654799	49654799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002152.2	-1	reviewed	p.D680N	0.996	170	0%	98	29.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HRC	3270	genome.wustl.edu	37	19	49657709	49657709	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002152.2	-1	reviewed	p.V262	0.004	336	0%	220	30.5%	-	-	-	-	-	NULL
HRC	3270	genome.wustl.edu	37	19	49657709	49657711	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	GAC	GAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002152.2	-1	reviewed	p.V262in_frame_del	0.004:0.156:0.165	-	-	-	-	-	-	-	-	-	NULL
HRC	3270	genome.wustl.edu	37	19	49657713	49657713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002152.2	-1	reviewed	p.D261V	0.119	217	3.7%	187	19.3%	-	-	benign(0.003)	tolerated(0.05)	neutral(0.345)	NULL
SLC6A16	28968	genome.wustl.edu	37	19	49797118	49797118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014037.2	-1	validated	p.F528L	0.371	499	0%	243	25.5%	-	-	probably_damaging(0.971)	tolerated(0.74)	neutral(0.414)	HMMPfam_SNF
SLC17A7	57030	genome.wustl.edu	37	19	49935835	49935835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020309.3	-1	reviewed	p.F364C	1.000	14	0%	16	50%	-	-	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
RPL13A	23521	genome.wustl.edu	37	19	49993541	49993541	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012423.2	+1	reviewed	p.F47	1.000	104	0%	66	42.4%	-	-	-	-	-	HMMPfam_Ribosomal_L13,superfamily_Ribosomal_L13
RPL13A	23521	genome.wustl.edu	37	19	49994339	49994339	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012423.2	+1	reviewed	p.L129	0.994	89	0%	54	44.4%	-	-	-	-	-	superfamily_Ribosomal_L13
RCN3	57333	genome.wustl.edu	37	19	50040295	50040295	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020650.2	+1	provisional	p.E151*	1.000	105	0%	60	43.3%	-	-	-	-	-	NULL
NOSIP	51070	genome.wustl.edu	37	19	50063238	50063238	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015953.3	-1	provisional	p.F43	0.909	202	0%	156	34.6%	-	-	-	-	-	superfamily_SSF57850
RRAS	6237	genome.wustl.edu	37	19	50139929	50139929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006270.3	-1	provisional	p.D134N	0.680	72	0%	47	38.3%	-	-	possibly_damaging(0.559)	tolerated(0.14)	neutral(0.440)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SCAF1	58506	genome.wustl.edu	37	19	50154138	50154138	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021228.2	+1	validated	p.S164	0.024	39	0%	28	46.4%	-	-	-	-	-	NULL
SCAF1	58506	genome.wustl.edu	37	19	50154321	50154321	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021228.2	+1	validated	p.F225	0.000	85	0%	28	28.6%	-	-	-	-	-	NULL
BCL2L12	83596	genome.wustl.edu	37	19	50173529	50173529	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138639.1	+1	reviewed	p.F246	0.997	19	0%	17	47.1%	-	-	-	-	-	NULL
CPT1C	126129	genome.wustl.edu	37	19	50203963	50203963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152359.1	+1	provisional	p.R102W	0.051	75	0%	51	39.2%	-	-	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
TSKS	60385	genome.wustl.edu	37	19	50247621	50247621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021733.1	-1	reviewed	p.E410K	1.000	64	0%	53	28.3%	-	-	benign(0.029)	deleterious(0.03)	neutral(0.366)	NULL
PTOV1	53635	genome.wustl.edu	37	19	50361820	50361820	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017432.3	+1	provisional	p.P317	0.964	28	0%	25	36%	-	-	-	-	-	NULL
IL4I1	259307	genome.wustl.edu	37	19	50399077	50399077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172374.1	-1	reviewed	p.H105Y	0.998	85	0%	44	29.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
VRK3	51231	genome.wustl.edu	37	19	50482460	50482460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016440.3	-1	reviewed	p.T439M	0.003	198	0%	143	37.8%	-	-	possibly_damaging(0.922)	tolerated(0.1)	deleterious(0.658)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZNF473	25888	genome.wustl.edu	37	19	50549738	50549738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006656.1	+1	validated	p.D680N	1.000	106	0%	105	29.5%	-	-	probably_damaging(0.988)	tolerated(0.16)	deleterious(0.497)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NR1H2	7376	genome.wustl.edu	37	19	50882354	50882354	+	Silent	SNP	C	C	T	rs145512629	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007121.4	+1	validated	p.I281	0.251	63	0%	53	35.8%	-	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
MYBPC2	4606	genome.wustl.edu	37	19	50949211	50949211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004533.3	+1	validated	p.R403H	0.996	169	0%	86	39.5%	-	-	possibly_damaging(0.881)	deleterious(0.01)	deleterious(0.749)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
C19orf63	284361	genome.wustl.edu	37	19	50978584	50978584	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430752	+1	known	e1-1	0.994	50	0%	41	24.4%	-	-	-	-	-	-
LRRC4B	94030	genome.wustl.edu	37	19	51021312	51021312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080457.1	-1	provisional	p.F553S	1.000	30	0%	22	18.2%	-	-	benign(0.02)	tolerated(0.11)	neutral(0.273)	NULL
SYT3	84258	genome.wustl.edu	37	19	51133181	51133181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032298.2	-1	validated	p.R308W	1.000	68	0%	49	32.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_C2_CaLB
SHANK1	50944	genome.wustl.edu	37	19	51172497	51172497	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016148.2	-1	validated	p.K907T	1.000	74	0%	29	17.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENSG00000180279	0	genome.wustl.edu	37	19	51321694	51321694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326989	+1	known	p.L41M	0.001	40	0.000	8	0.750	-	-	unknown(0)	-	-	NULL
KLK3	354	genome.wustl.edu	37	19	51361297	51361297	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001648.2	+1	reviewed	p.I73	0.015	172	0%	133	33.1%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK4	9622	genome.wustl.edu	37	19	51411964	51411964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004917.3	-1	reviewed	p.D116N	1.000	97	0%	54	44.4%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK9	284366	genome.wustl.edu	37	19	51506384	51506384	+	Nonsense_Mutation	SNP	C	C	A	rs111525769		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012315.1	-1	validated	p.E246*	0.013	143	0%	95	28.4%	-	-	-	-	-	superfamily_Trypsin-like serine proteases
KLK9	284366	genome.wustl.edu	37	19	51507050	51507050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012315.1	-1	validated	p.E171D	0.015	139	0%	102	40.2%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK10	5655	genome.wustl.edu	37	19	51518082	51518082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077500.1	-1	reviewed	p.I269V	1.000	267	0%	134	41%	-	-	possibly_damaging(0.86)	tolerated(0.06)	deleterious(0.655)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK10	5655	genome.wustl.edu	37	19	51519341	51519341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077500.1	-1	reviewed	p.R114H	0.000	79	0%	74	36.5%	-	-	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ENSG00000171101	0	genome.wustl.edu	37	19	51671036	51671036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341811	+1	known	p.I81T	0.004	75	0%	46	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
C19orf75	284369	genome.wustl.edu	37	19	51768869	51768869	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173635.1	+1	predicted	p.N90	0.000	176	0%	98	38.8%	-	-	-	-	-	NULL
ETFB	2109	genome.wustl.edu	37	19	51857488	51857488	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014763.1	-1	reviewed	p.I135	0.961	103	0%	59	11.9%	-	-	-	-	-	HMMPfam_ETF,superfamily_SSF52402
ETFB	2109	genome.wustl.edu	37	19	51857546	51857546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014763.1	-1	reviewed	p.D116G	1.000	109	0.9%	60	38.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF52402
SIGLEC10	89790	genome.wustl.edu	37	19	51917741	51917741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033130.4	-1	validated	p.F548L	0.043	176	0.6%	119	36.1%	-	-	benign(0.021)	tolerated(0.72)	neutral(0.003)	NULL
SIGLEC10	89790	genome.wustl.edu	37	19	51920352	51920352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033130.4	-1	validated	p.F135L	0.010	71	0%	24	37.5%	-	-	benign(0.008)	tolerated(1)	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC8	27181	genome.wustl.edu	37	19	51957546	51957546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014442.2	-1	validated	p.S391L	0.000	288	0%	157	27.4%	-	-	possibly_damaging(0.719)	tolerated(0.08)	deleterious(0.560)	NULL
SIGLEC6	946	genome.wustl.edu	37	19	52031466	52031466	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001245.5	-1	validated	p.W352G	0.000	283	0%	122	26.2%	-	-	benign(0.001)	tolerated(0.66)	neutral(0.003)	NULL
ZNF175	7728	genome.wustl.edu	37	19	52091236	52091236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007147.2	+1	validated	p.R551I	0.921	235	0%	144	20.8%	-	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SIGLEC5	8778	genome.wustl.edu	37	19	52133129	52133129	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003830.2	-1	validated	p.V126	0.000	464	0%	262	30.9%	-	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ZNF614	80110	genome.wustl.edu	37	19	52519161	52519161	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025040.3	-1	validated	p.E564*	0.726	484	0%	269	38.3%	-	-	-	-	-	superfamily_SSF57667
ZNF614	80110	genome.wustl.edu	37	19	52519595	52519595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025040.3	-1	validated	p.R419Q	0.964	381	0%	232	28.4%	-	-	possibly_damaging(0.869)	deleterious(0.01)	deleterious(0.743)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52538090	52538090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014650.2	-1	provisional	p.R281Q	0.972	305	0%	190	40%	-	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52538158	52538158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014650.2	-1	provisional	p.E258D	1.000	227	0%	150	36.7%	-	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52538174	52538174	+	Missense_Mutation	SNP	C	C	A	rs183925976	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014650.2	-1	provisional	p.R253I	0.992	202	0%	138	37.7%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000249246	0	genome.wustl.edu	37	19	52562200	52562200	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514408	-1	known	NULL	0.000	83	0%	29	37.9%	-	-	-	-	-	-
ZNF841	284371	genome.wustl.edu	37	19	52569286	52569286	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136499.1	-1	validated	p.R617*	0.000	268	0%	196	35.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52618207	52618207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178523.3	-1	validated	p.R737I	0.004	388	0.3%	260	37.3%	-	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52618630	52618630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178523.3	-1	validated	p.R596Q	0.028	311	0%	233	12%	-	-	benign(0.054)	tolerated(0.92)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52627272	52627272	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178523.3	-1	validated	p.E15*	0.653	338	0%	161	19.9%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF836	162962	genome.wustl.edu	37	19	52658375	52658375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102657.1	-1	provisional	p.R854I	0.001	305	0%	236	36.9%	-	-	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52658888	52658888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102657.1	-1	provisional	p.K683T	0.009	311	0%	162	35.8%	-	-	benign(0.003)	tolerated(0.63)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52660058	52660058	+	Missense_Mutation	SNP	C	C	T	rs190793359	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102657.1	-1	provisional	p.R293Q	0.220	286	0%	222	37.8%	-	-	benign(0.003)	tolerated(0.54)	neutral(0.007)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF480	147657	genome.wustl.edu	37	19	52803646	52803646	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144684.2	+1	validated	e1-1	0.000	532	0%	223	33.6%	-	-	-	-	-	-
ZNF610	162963	genome.wustl.edu	37	19	52856965	52856965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173530.2	+1	validated	p.E32K	0.891	431	0%	211	14.7%	-	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF610	162963	genome.wustl.edu	37	19	52869757	52869757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173530.2	+1	validated	p.E376K	0.025	210	0.5%	122	15.6%	-	-	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF534	147658	genome.wustl.edu	37	19	52941237	52941237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143939.1	+1	validated	p.Q188R	0.000	165	0%	108	37%	-	-	probably_damaging(0.975)	tolerated(0.59)	neutral(0.421)	superfamily_SSF57667
ZNF534	147658	genome.wustl.edu	37	19	52942001	52942001	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143939.1	+1	validated	p.L443	0.000	278	0%	186	30.6%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF701	55762	genome.wustl.edu	37	19	53079183	53079183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018260.2	+1	validated	p.F17L	0.613	755	0%	383	19.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF83	55769	genome.wustl.edu	37	19	53116456	53116456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105549.1	-1	validated	p.E454D	1.000	243	0%	191	35.1%	-	-	benign(0.363)	deleterious(0)	deleterious(0.560)	superfamily_C2H2 and C2HC zinc fingers
ENSG00000245932	0	genome.wustl.edu	37	19	53302273	53302273	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500436	+1	known	NULL	0.001	161	0%	108	37%	-	-	-	-	-	-
ZNF468	90333	genome.wustl.edu	37	19	53352436	53352436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008801.1	-1	validated	p.E16*	0.786	757	0%	459	35.3%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LOC388559	388559	genome.wustl.edu	37	19	53410150	53410150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_496322.5	-1	model	p.F457L	0.009	434	0%	278	14.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC388559	388559	genome.wustl.edu	37	19	53410619	53410619	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_496322.5	-1	model	p.I301S	0.272	148	0%	90	41.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF160	90338	genome.wustl.edu	37	19	53572226	53572226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102603.1	-1	reviewed	p.R521C	0.000	245	0%	184	32.6%	-	-	benign(0.06)	tolerated(0.18)	neutral(0.060)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF160	90338	genome.wustl.edu	37	19	53572789	53572789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102603.1	-1	reviewed	p.R333Q	0.012	262	0.4%	180	37.2%	-	-	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF160	90338	genome.wustl.edu	37	19	53572964	53572964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102603.1	-1	reviewed	p.H275N	0.859	380	0%	238	22.7%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF160	90338	genome.wustl.edu	37	19	53573203	53573203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102603.1	-1	reviewed	p.F195Y	0.001	403	0%	256	36.3%	-	-	possibly_damaging(0.768)	tolerated(0.82)	neutral(0.285)	NULL
ZNF347	84671	genome.wustl.edu	37	19	53643605	53643605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032584.2	-1	validated	p.L826I	0.000	399	0%	264	36.7%	-	-	benign(0.036)	-	-	NULL
ZNF347	84671	genome.wustl.edu	37	19	53652585	53652585	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032584.2	-1	validated	p.F17	0.955	484	0%	251	12.4%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF665	79788	genome.wustl.edu	37	19	53668018	53668018	+	Silent	SNP	G	G	A	rs184736845	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024733.3	-1	provisional	p.C575	0.668	423	0.2%	261	37.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF677	342926	genome.wustl.edu	37	19	53741132	53741132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182609.2	-1	provisional	p.R283I	0.011	199	0.5%	133	29.3%	-	-	possibly_damaging(0.456)	tolerated(0.92)	neutral(0.149)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF761	388561	genome.wustl.edu	37	19	53958640	53958640	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008401.3	+1	validated	p.T293	0.974	355	0%	227	36.6%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF813	126017	genome.wustl.edu	37	19	53995214	53995214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004301.3	+1	validated	p.E576D	1.000	212	0%	150	42.7%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_SSF57667
MIR518C	574477	genome.wustl.edu	37	19	54212053	54212053	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384822	+1	known	NULL	0.030	604	0%	273	37.7%	-	-	-	-	-	-
MIR518A1	574488	genome.wustl.edu	37	19	54234315	54234315	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385068	+1	known	NULL	0.008	255	0%	115	44.3%	-	-	-	-	-	-
MIR518A2	574491	genome.wustl.edu	37	19	54242607	54242607	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384966	+1	known	NULL	0.065	293	0%	153	36.6%	-	-	-	-	-	-
NLRP12	91662	genome.wustl.edu	37	19	54314117	54314117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144687.2	-1	reviewed	p.D266Y	0.899	62	0%	52	38.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NACHT
CACNG7	59284	genome.wustl.edu	37	19	54416264	54416264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031896.3	+1	reviewed	p.R60Q	0.999	68	0%	67	28.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMP22_Claudin
CACNG6	59285	genome.wustl.edu	37	19	54501553	54501553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145814.1	+1	reviewed	p.R131I	1.000	225	0%	120	32.5%	-	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
LENG1	79165	genome.wustl.edu	37	19	54659656	54659656	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024316.1	-1	provisional	p.R200*	0.989	42	0%	41	48.8%	-	-	-	-	-	NULL
TMC4	147798	genome.wustl.edu	37	19	54673291	54673291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145303.1	-1	validated	p.R140Q	0.000	145	0%	94	22.3%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
LILRB5	10990	genome.wustl.edu	37	19	54754723	54754723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081442.1	-1	reviewed	p.T568N	0.000	336	0%	168	32.1%	-	-	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	NULL
LILRB2	10288	genome.wustl.edu	37	19	54780274	54780274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005874.3	-1	reviewed	p.A507V	0.001	422	0%	233	19.7%	-	-	possibly_damaging(0.897)	deleterious(0)	deleterious(0.798)	NULL
LILRA5	353514	genome.wustl.edu	37	19	54823208	54823208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021250.2	-1	reviewed	p.G112E	0.027	989	0%	526	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TTYH1	57348	genome.wustl.edu	37	19	54942319	54942319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005367.1	+1	reviewed	p.G359*	1.000	99	0%	68	23.5%	-	-	-	-	-	HMMPfam_Tweety
LENG8	114823	genome.wustl.edu	37	19	54967638	54967638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052925.2	+1	validated	p.G480V	1.000	130	0%	38	34.2%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
LILRA1	11024	genome.wustl.edu	37	19	55112272	55112272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006863.1	+1	provisional	p.R487I	0.001	427	0%	317	13.9%	-	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
KIR2DL1	3802	genome.wustl.edu	37	19	55285010	55285010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014218.2	+1	reviewed	p.R99I	0.001	1031	0.1%	662	18.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ig,superfamily_SSF48726
KIR2DL1	3802	genome.wustl.edu	37	19	55294967	55294967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014218.2	+1	reviewed	p.G283R	0.004	1321	0%	735	24.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIR2DL1	3802	genome.wustl.edu	37	19	55295182	55295182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014218.2	+1	reviewed	p.P322S	0.000	1002	0%	510	24.9%	-	-	possibly_damaging(0.481)	tolerated(0.23)	neutral(0.201)	NULL
KIR2DL4	3805	genome.wustl.edu	37	19	55315134	55315134	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080770.1	+1	reviewed	p.L10	0.011	633	0%	457	27.6%	-	-	-	-	-	NULL
KIR3DL1	3811	genome.wustl.edu	37	19	55331352	55331352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013289.2	+1	reviewed	p.F180L	0.002	881	0%	546	35.3%	-	-	benign(0.046)	deleterious(0)	neutral(0.447)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KIR2DS4	3809	genome.wustl.edu	37	19	55346545	55346545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339924	+1	known	p.L16M	0.222	1056	0%	666	36.9%	-	-	benign(0.222)	deleterious(0.01)	neutral(0.428)	NULL
NLRP7	199713	genome.wustl.edu	37	19	55449588	55449588	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127255.1	-1	reviewed	p.P651	0.000	89	0%	46	28.3%	-	-	-	-	-	superfamily_RNI-like
EPS8L1	54869	genome.wustl.edu	37	19	55593161	55593161	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133180.2	+1	reviewed	p.F265	0.441	45	0%	29	24.1%	-	-	-	-	-	NULL
TNNI3	7137	genome.wustl.edu	37	19	55666124	55666124	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000363.4	-1	reviewed	p.T119	0.822	370	0%	237	31.2%	-	-	-	-	-	HMMPfam_Troponin
PTPRH	5794	genome.wustl.edu	37	19	55696967	55696967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002842.3	-1	validated	p.V989I	0.959	102	0%	73	35.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PPP6R1	22870	genome.wustl.edu	37	19	55748191	55748191	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014931.3	-1	validated	e16-2	1.000	266	0%	203	39.9%	-	-	-	-	-	-
NAT14	57106	genome.wustl.edu	37	19	55997869	55997869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020378.2	+1	provisional	p.R56H	1.000	17	0%	17	52.9%	-	-	possibly_damaging(0.499)	deleterious(0)	deleterious(0.611)	superfamily_Acyl_CoA_acyltransferase
SSC5D	284297	genome.wustl.edu	37	19	56012409	56012409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144950.1	+1	provisional	p.D876Y	0.127	179	0%	98	32.7%	-	-	possibly_damaging(0.677)	deleterious(0.01)	deleterious(0.647)	superfamily_SRCR-like
CCDC106	29903	genome.wustl.edu	37	19	56160594	56160594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013301.2	+1	validated	p.I19V	1.000	135	0%	97	34%	-	-	benign(0.373)	deleterious(0)	deleterious(0.564)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56223929	56223929	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176820.2	-1	reviewed	p.D843E	0.000	189	0%	123	45.5%	-	-	benign(0.001)	tolerated(1)	-	HMMSmart_SM00368,superfamily_RNI-like
NLRP11	204801	genome.wustl.edu	37	19	56329524	56329524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145007.3	-1	validated	p.S6Y	0.000	171	0%	101	30.7%	-	-	possibly_damaging(0.914)	tolerated(0.75)	neutral(0.367)	superfamily_DEATH domain
NLRP4	147945	genome.wustl.edu	37	19	56369290	56369290	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.I177	0.000	121	0%	82	39%	-	-	-	-	-	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRP4	147945	genome.wustl.edu	37	19	56369438	56369438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.L227V	0.155	113	0%	59	25.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRP4	147945	genome.wustl.edu	37	19	56369708	56369708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.D317Y	0.003	134	0%	76	18.4%	-	-	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	HMMPfam_NACHT
NLRP4	147945	genome.wustl.edu	37	19	56370057	56370057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.L433P	0.730	173	0%	125	31.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP4	147945	genome.wustl.edu	37	19	56388524	56388524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.E896D	0.011	547	0%	351	36.5%	-	-	possibly_damaging(0.919)	tolerated(0.06)	deleterious(0.692)	HMMSmart_SM00368,superfamily_RNI-like
NLRP13	126204	genome.wustl.edu	37	19	56424053	56424053	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176810.2	-1	validated	p.N377I	0.000	340	0%	134	13.4%	-	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_NACHT
NLRP5	126206	genome.wustl.edu	37	19	56539529	56539529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153447.4	+1	reviewed	p.D644Y	0.002	123	0%	93	33.3%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ZSCAN5B	342933	genome.wustl.edu	37	19	56702248	56702248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080456.2	-1	validated	p.P233T	0.000	681	0%	452	38.1%	-	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
LOC646698	646698	genome.wustl.edu	37	19	56758347	56758347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725568.1	+1	model	p.E325D	0.000	242	0%	129	17.1%	-	-	-	-	-	NULL
ZNF582	147948	genome.wustl.edu	37	19	56895345	56895345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144690.1	-1	provisional	p.I481V	0.000	730	0%	409	37.4%	-	-	benign(0)	tolerated(1)	-	NULL
ZNF583	147949	genome.wustl.edu	37	19	56935058	56935058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152478.2	+1	validated	p.R344I	0.968	520	0%	339	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF471	57573	genome.wustl.edu	37	19	57036704	57036704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020813.2	+1	validated	p.R423I	1.000	338	0%	148	33.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF470	388566	genome.wustl.edu	37	19	57089047	57089047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001668.3	+1	validated	p.R417I	0.997	269	0%	173	34.7%	-	-	probably_damaging(0.972)	tolerated(0.25)	neutral(0.451)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZIM2	23619	genome.wustl.edu	37	19	57286199	57286199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015363.4	-1	reviewed	p.L481I	0.815	143	0%	118	34.7%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZIM2	23619	genome.wustl.edu	37	19	57286283	57286283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015363.4	-1	reviewed	p.R453C	0.000	125	0%	92	10.9%	-	-	unknown(0)	deleterious(0.04)	-	NULL
ZIM2	23619	genome.wustl.edu	37	19	57286322	57286322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015363.4	-1	reviewed	p.L440I	0.001	108	0%	75	10.7%	-	-	unknown(0)	deleterious(0.03)	-	NULL
USP29	57663	genome.wustl.edu	37	19	57641241	57641241	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020903.2	+1	validated	p.E400*	0.000	152	0%	119	15.1%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP29	57663	genome.wustl.edu	37	19	57641963	57641963	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020903.2	+1	validated	p.I640	0.000	141	0%	75	33.3%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP29	57663	genome.wustl.edu	37	19	57642298	57642298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020903.2	+1	validated	p.P752H	0.009	86	0%	43	46.5%	-	-	probably_damaging(0.993)	tolerated(0.05)	deleterious(0.795)	HMMPfam_UCH,superfamily_SSF54001
ZNF264	9422	genome.wustl.edu	37	19	57723746	57723746	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003417.4	+1	reviewed	p.F427	0.004	252	0%	137	36.5%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF264	9422	genome.wustl.edu	37	19	57724224	57724224	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003417.4	+1	reviewed	p.E587*	0.708	151	0%	99	37.4%	-	-	-	-	-	NULL
ZNF264	9422	genome.wustl.edu	37	19	57724230	57724230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003417.4	+1	reviewed	p.L589I	0.828	146	0%	92	28.3%	-	-	possibly_damaging(0.68)	tolerated(0.34)	neutral(0.266)	NULL
LOC100288211	100288211	genome.wustl.edu	37	19	57828599	57828599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343660.1	-1	model	p.S111Y	1.000	141	0%	58	13.8%	-	-	-	-	-	HMMPfam_DUF862
LOC100288211	100288211	genome.wustl.edu	37	19	57828630	57828630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343660.1	-1	model	p.H101N	1.000	192	0%	79	11.4%	-	-	-	-	-	HMMPfam_DUF862
ZNF304	57343	genome.wustl.edu	37	19	57868469	57868469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020657.2	+1	validated	p.R411I	1.000	222	0%	133	33.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF304	57343	genome.wustl.edu	37	19	57868615	57868615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020657.2	+1	validated	p.D460Y	0.000	215	0%	163	25.2%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRAPPC2P1	10597	genome.wustl.edu	37	19	57876566	57876566	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002166.1	+1	provisional	NULL	0.140	182	0%	90	27.8%	-	-	benign(0.027)	tolerated(0.48)	neutral(0.012)	-
ZNF547	284306	genome.wustl.edu	37	19	57888609	57888609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173631.2	+1	validated	p.C89R	0.000	245	0%	128	35.2%	-	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF548	147694	genome.wustl.edu	37	19	57910836	57910836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152909.3	+1	validated	p.K394T	0.000	182	0%	122	34.4%	-	-	benign(0.099)	deleterious(0.01)	neutral(0.413)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF17	7565	genome.wustl.edu	37	19	57932028	57932028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006959.2	+1	validated	p.E390K	0.000	224	0%	151	35.1%	-	-	benign(0.035)	tolerated(0.28)	neutral(0.034)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000246220	0	genome.wustl.edu	37	19	57932851	57932851	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501492	-1	known	NULL	0.000	103	0%	54	38.9%	-	-	-	-	-	-
ZNF749	388567	genome.wustl.edu	37	19	57956327	57956327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001023561.2	+1	provisional	p.R604K	0.001	204	0%	116	25.9%	-	-	possibly_damaging(0.59)	tolerated(0.54)	neutral(0.211)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF549	256051	genome.wustl.edu	37	19	58049212	58049212	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153263.1	+1	provisional	p.C267	1.000	150	0%	81	32.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF530	348327	genome.wustl.edu	37	19	58117105	58117105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020880.3	+1	validated	p.S71Y	0.018	124	0%	63	39.7%	-	-	possibly_damaging(0.931)	deleterious(0.04)	deleterious(0.726)	HMMSmart_KRAB
ZNF134	7693	genome.wustl.edu	37	19	58131857	58131857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003435.3	+1	provisional	p.E124K	0.011	93	0%	73	37%	-	-	benign(0.015)	tolerated(0.67)	neutral(0.003)	NULL
ZNF211	10520	genome.wustl.edu	37	19	58146083	58146083	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006385.3	+1	validated	p.F72	0.001	752	0%	407	37.1%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZSCAN4	201516	genome.wustl.edu	37	19	58189966	58189966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152677.2	+1	validated	p.R332I	0.909	149	0%	72	37.5%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZSCAN4	201516	genome.wustl.edu	37	19	58190012	58190012	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152677.2	+1	validated	p.K347N	0.833	128	0%	82	15.9%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF551	90233	genome.wustl.edu	37	19	58198791	58198791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138347.3	+1	validated	p.R367I	0.717	276	0%	182	36.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF154	7710	genome.wustl.edu	37	19	58213441	58213441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085384.1	-1	validated	p.Q292H	0.955	314	0%	189	31.7%	-	-	probably_damaging(0.974)	tolerated(0.05)	deleterious(0.761)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF671	79891	genome.wustl.edu	37	19	58232362	58232362	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024833.2	-1	validated	p.T364	0.740	258	0%	140	35%	-	-	-	-	-	superfamily_SSF57667
ZNF671	79891	genome.wustl.edu	37	19	58232763	58232763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024833.2	-1	validated	p.S231G	0.000	263	0%	165	38.2%	-	-	benign(0.073)	tolerated(0.27)	neutral(0.038)	NULL
ZNF776	284309	genome.wustl.edu	37	19	58264915	58264915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173632.3	+1	validated	p.E139D	0.054	158	0%	90	35.6%	-	-	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	superfamily_C2H2 and C2HC zinc fingers
ZNF814	730051	genome.wustl.edu	37	19	58384467	58384467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144989.1	-1	validated	p.R764Q	0.127	319	0%	195	32.8%	-	-	probably_damaging(0.983)	tolerated(0.09)	deleterious(0.726)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF418	147686	genome.wustl.edu	37	19	58437534	58437534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133460.1	-1	provisional	p.R672I	0.000	221	0%	141	31.9%	-	-	benign(0.088)	deleterious(0)	neutral(0.451)	superfamily_SSF57667
ZNF256	10172	genome.wustl.edu	37	19	58453817	58453817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005773.2	-1	validated	p.D120G	0.004	577	0%	340	12.1%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	superfamily_C2H2 and C2HC zinc fingers
ZNF606	80095	genome.wustl.edu	37	19	58489781	58489781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025027.3	-1	validated	p.R756I	1.000	311	0%	157	35.7%	-	-	possibly_damaging(0.664)	tolerated(0.16)	neutral(0.294)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZSCAN18	65982	genome.wustl.edu	37	19	58601489	58601489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145542.1	-1	validated	p.R105H	0.839	52	0%	40	35%	-	-	probably_damaging(0.999)	tolerated(0.58)	deleterious(0.495)	HMMPfam_SCAN,HMMSmart_SCAN
ZNF329	79673	genome.wustl.edu	37	19	58639951	58639951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024620.3	-1	validated	p.R307I	1.000	495	0%	275	29.5%	-	-	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF584	201514	genome.wustl.edu	37	19	58921375	58921375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173548.1	+1	provisional	p.E29G	0.979	698	0%	434	33.6%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF584	201514	genome.wustl.edu	37	19	58927206	58927206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443917	+1	known	p.S97P	0.002	51	0%	21	47.6%	-	-	possibly_damaging(0.539)	deleterious(0.02)	deleterious(0.566)	NULL
ZNF584	201514	genome.wustl.edu	37	19	58928353	58928353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173548.1	+1	provisional	p.E156D	0.004	154	0%	109	33%	-	-	benign(0.143)	tolerated(0.06)	neutral(0.335)	superfamily_SSF57667
ZNF132	7691	genome.wustl.edu	37	19	58946028	58946028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003433.3	-1	validated	p.E261D	0.919	87	0%	54	44.4%	-	-	benign(0.141)	tolerated(0.09)	neutral(0.308)	superfamily_C2H2 and C2HC zinc fingers
ZNF324B	388569	genome.wustl.edu	37	19	58967618	58967618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207395.2	+1	validated	p.R436H	0.953	38	0%	34	32.4%	-	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF324B	388569	genome.wustl.edu	37	19	58967754	58967754	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207395.2	+1	validated	p.F481	0.001	59	0%	59	28.8%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF324B	388569	genome.wustl.edu	37	19	58967899	58967899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207395.2	+1	validated	p.R530C	0.002	65	0%	56	48.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLC27A5	10998	genome.wustl.edu	37	19	59021365	59021365	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012254.2	-1	reviewed	p.P302	0.040	161	0%	108	34.3%	-	-	-	-	-	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like
ZBTB45	84878	genome.wustl.edu	37	19	59028424	59028424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032792.2	-1	provisional	p.R206Q	0.002	24	0%	25	32%	-	-	benign(0.139)	tolerated(0.07)	neutral(0.331)	NULL
CHMP2A	27243	genome.wustl.edu	37	19	59063275	59063275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014453.2	-1	validated	p.S180L	1.000	333	0%	230	35.2%	-	-	benign(0.045)	tolerated(0.29)	neutral(0.032)	HMMPfam_Snf7
CHMP2A	27243	genome.wustl.edu	37	19	59063276	59063276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014453.2	-1	validated	p.S180A	1.000	334	0%	235	36.2%	-	-	benign(0)	tolerated(0.95)	-	HMMPfam_Snf7
DEFB129	140881	genome.wustl.edu	37	20	207950	207950	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080831.2	+1	validated	p.I7	0.999	315	0.3%	169	25.4%	-	-	-	-	-	NULL
C20orf96	140680	genome.wustl.edu	37	20	264666	264666	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153269.1	-1	predicted	p.E82*	0.010	586	0%	345	13.6%	-	-	-	-	-	NULL
TRIB3	57761	genome.wustl.edu	37	20	368761	368761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021158.3	+1	reviewed	p.R36Q	0.224	85	0%	61	31.1%	-	-	benign(0.033)	deleterious(0.02)	neutral(0.385)	NULL
TBC1D20	128637	genome.wustl.edu	37	20	419792	419792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144628.2	-1	validated	p.E306K	0.893	209	0%	138	41.3%	-	-	benign(0.001)	tolerated(1)	-	NULL
FAM110A	83541	genome.wustl.edu	37	20	826309	826309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042353.1	+1	validated	p.R288W	0.013	63	0%	56	10.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TMEM74B	55321	genome.wustl.edu	37	20	1161728	1161728	+	Missense_Mutation	SNP	C	C	T	rs191499293	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018354.1	-1	provisional	p.A179T	0.998	42	0%	39	38.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C20orf202	400831	genome.wustl.edu	37	20	1187596	1187596	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009612.2	+1	predicted	p.S73	0.010	53	0%	50	26%	-	-	-	-	-	NULL
RAD21L1	642636	genome.wustl.edu	37	20	1209144	1209144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136566.2	+1	validated	p.K16R	1.000	169	0%	95	34.7%	-	-	benign(0.39)	tolerated(0.3)	neutral(0.153)	HMMPfam_Rad21_Rec8_N
RAD21L1	642636	genome.wustl.edu	37	20	1234962	1234962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136566.2	+1	validated	p.R511K	1.000	143	0%	90	41.1%	-	-	possibly_damaging(0.61)	tolerated(0.1)	deleterious(0.498)	HMMPfam_Rad21_Rec8
NSFL1C	55968	genome.wustl.edu	37	20	1433782	1433782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016143.3	-1	reviewed	p.H181N	1.000	234	0%	144	40.3%	-	-	benign(0.053)	tolerated(0.49)	neutral(0.014)	HMMSmart_SM00553,superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain
PDYN	5173	genome.wustl.edu	37	20	1961400	1961400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024411.2	-1	reviewed	p.L112I	0.540	180	0%	156	30.1%	-	-	possibly_damaging(0.465)	tolerated(0.09)	neutral(0.450)	NULL
TGM3	7053	genome.wustl.edu	37	20	2293602	2293602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003245.3	+1	reviewed	p.R200H	0.997	223	0%	145	40%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	superfamily_Cysteine proteinases
TMC2	117532	genome.wustl.edu	37	20	2575612	2575612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080751.2	+1	validated	p.S359P	1.000	217	0%	159	39%	-	-	possibly_damaging(0.891)	deleterious(0.04)	deleterious(0.700)	NULL
NOP56	10528	genome.wustl.edu	37	20	2635484	2635484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006392.2	+1	reviewed	p.R154C	1.000	136	0%	88	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOP56	10528	genome.wustl.edu	37	20	2637452	2637452	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006392.2	+1	reviewed	p.R398*	1.000	274	0%	142	36.6%	-	-	-	-	-	HMMPfam_Nop,superfamily_SSF89124
PTPRA	5786	genome.wustl.edu	37	20	3002031	3002031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002836.3	+1	reviewed	p.T373N	0.999	372	0%	219	33.8%	-	-	benign(0.272)	tolerated(0.14)	neutral(0.279)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
FASTKD5	60493	genome.wustl.edu	37	20	3129104	3129104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021826.4	-1	validated	p.D205Y	0.959	87	0%	46	26.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ProSAPiP1	9762	genome.wustl.edu	37	20	3147556	3147556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014731.2	-1	validated	p.R85H	1.000	52	0%	40	37.5%	-	-	possibly_damaging(0.807)	tolerated(0.19)	neutral(0.353)	NULL
SLC4A11	83959	genome.wustl.edu	37	20	3212013	3212013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032034.3	-1	reviewed	p.R320H	0.000	133	0%	98	24.5%	-	-	benign(0.002)	tolerated(0.28)	neutral(0.032)	NULL
SLC4A11	83959	genome.wustl.edu	37	20	3214922	3214922	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032034.3	-1	reviewed	p.A126	0.051	156	0%	96	40.6%	-	-	-	-	-	superfamily_Phoshotransferase/anion transport protein
C20orf194	25943	genome.wustl.edu	37	20	3297423	3297423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009984.1	-1	validated	p.E496*	1.000	185	0%	109	31.2%	-	-	-	-	-	NULL
ATRN	8455	genome.wustl.edu	37	20	3619484	3619484	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139321.2	+1	reviewed	p.R1318*	1.000	343	0.3%	139	46.8%	-	-	-	-	-	NULL
SIGLEC1	6614	genome.wustl.edu	37	20	3670697	3670697	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419548	-1	known	p.A416T	0.063	45	0%	38	39.5%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CDC25B	994	genome.wustl.edu	37	20	3782972	3782972	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021873.2	+1	reviewed	p.I381	0.729	130	0%	71	33.8%	-	-	-	-	-	HMMPfam_M-inducer_phosp
SMOX	54498	genome.wustl.edu	37	20	4164256	4164256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175839.1	+1	reviewed	p.E495D	1.000	51	0%	60	30%	-	-	benign(0.09)	tolerated(0.53)	neutral(0.014)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
RASSF2	9770	genome.wustl.edu	37	20	4770246	4770246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014737.2	-1	reviewed	p.F212C	1.000	353	0%	188	29.8%	-	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_RA,HMMSmart_RA
GPCPD1	56261	genome.wustl.edu	37	20	5560680	5560680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019593.3	-1	validated	p.K149N	1.000	175	0%	84	33.3%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
CHGB	1114	genome.wustl.edu	37	20	5904099	5904099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001819.2	+1	reviewed	p.E437K	0.855	143	0.7%	56	37.5%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Granin
TRMT6	51605	genome.wustl.edu	37	20	5927140	5927140	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015939.3	-1	reviewed	p.N56	0.772	370	0%	212	34.9%	-	-	-	-	-	HMMPfam_Gcd10p
MCM8	84515	genome.wustl.edu	37	20	5948132	5948132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032485.4	+1	reviewed	p.R309Q	1.000	353	0.3%	164	30.5%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_SM00350,superfamily_Nucleic acid-binding proteins
MCM8	84515	genome.wustl.edu	37	20	5974312	5974312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032485.4	+1	reviewed	p.R801W	1.000	99	0%	39	23.1%	-	-	possibly_damaging(0.739)	tolerated(0.1)	deleterious(0.557)	NULL
LRRN4	164312	genome.wustl.edu	37	20	6021785	6021785	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152611.3	-1	validated	p.S702	0.001	14	0%	10	40%	-	-	-	-	-	NULL
FERMT1	55612	genome.wustl.edu	37	20	6093147	6093147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017671.4	-1	reviewed	p.S170Y	1.000	430	0%	170	31.8%	-	-	possibly_damaging(0.637)	tolerated(0.07)	deleterious(0.542)	HMMSmart_SM00295
LAMP5	24141	genome.wustl.edu	37	20	9510428	9510428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012261.2	+1	validated	p.Q268H	1.000	177	0%	116	41.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ANKRD5	63926	genome.wustl.edu	37	20	10036279	10036279	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022096.4	+1	validated	p.R768*	0.003	175	0%	93	33.3%	-	-	-	-	-	NULL
SNAP25	6616	genome.wustl.edu	37	20	10279989	10279989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003081.2	+1	reviewed	p.R161C	1.000	196	0%	66	13.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNARE,HMMSmart_SM00397
JAG1	182	genome.wustl.edu	37	20	10620280	10620280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.A1175T	0.668	691	0%	394	40.4%	-	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
JAG1	182	genome.wustl.edu	37	20	10623234	10623234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.Q825R	1.000	204	0%	119	33.6%	-	-	probably_damaging(0.963)	tolerated(0.15)	deleterious(0.647)	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
JAG1	182	genome.wustl.edu	37	20	10626069	10626069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.R683H	0.996	199	0%	110	40%	-	-	probably_damaging(0.992)	tolerated(0.44)	neutral(0.460)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
BTBD3	22903	genome.wustl.edu	37	20	11903532	11903532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014962.2	+1	validated	p.D263N	1.000	182	0%	100	43%	-	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	NULL
SPTLC3	55304	genome.wustl.edu	37	20	12989992	12989992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018327.2	+1	validated	p.S26I	0.000	299	0.3%	97	38.1%	-	-	possibly_damaging(0.843)	tolerated(0.07)	deleterious(0.642)	NULL
ESF1	51575	genome.wustl.edu	37	20	13756670	13756670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016649.3	-1	provisional	p.K295T	1.000	1091	0%	644	28.7%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
FLRT3	23767	genome.wustl.edu	37	20	14307537	14307537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013281.2	-1	reviewed	p.L206I	1.000	132	0%	91	23.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF52058
FLRT3	23767	genome.wustl.edu	37	20	14307816	14307816	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013281.2	-1	reviewed	p.E113*	1.000	445	0%	192	36.5%	-	-	-	-	-	superfamily_SSF52058
MACROD2	140733	genome.wustl.edu	37	20	15967782	15967782	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080676.5	+1	validated	p.E378*	1.000	404	0%	155	35.5%	-	-	-	-	-	NULL
KIF16B	55614	genome.wustl.edu	37	20	16316614	16316614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024704.3	-1	validated	p.R1223H	1.000	213	0%	103	39.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
KIF16B	55614	genome.wustl.edu	37	20	16360168	16360168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024704.3	-1	validated	p.E827K	0.328	197	0%	115	33%	-	-	possibly_damaging(0.455)	deleterious(0.02)	deleterious(0.532)	NULL
BFSP1	631	genome.wustl.edu	37	20	17479481	17479481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001195.3	-1	reviewed	p.E314K	1.000	189	0.5%	168	36.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SNX5	27131	genome.wustl.edu	37	20	17923792	17923792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014426.2	-1	reviewed	p.L376I	1.000	275	0%	228	30.3%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Vps5
CSRP2BP	57325	genome.wustl.edu	37	20	18142572	18142572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020536.4	+1	reviewed	p.R264Q	1.000	189	0%	75	14.7%	-	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
DZANK1	55184	genome.wustl.edu	37	20	18435994	18435994	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099407.1	-1	validated	p.Q92P	1.000	301	0%	156	35.9%	-	-	possibly_damaging(0.935)	deleterious(0.01)	deleterious(0.786)	NULL
DZANK1	55184	genome.wustl.edu	37	20	18440897	18440897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099407.1	-1	validated	p.L55I	0.987	226	0%	130	36.2%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
SEC23B	10483	genome.wustl.edu	37	20	18507139	18507139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006363.4	+1	reviewed	p.E319D	1.000	241	0%	133	35.3%	-	-	benign(0.002)	tolerated(1)	-	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995
RIN2	54453	genome.wustl.edu	37	20	19955609	19955609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018993.2	+1	reviewed	p.P314S	0.981	75	0%	46	37%	-	-	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	NULL
NAA20	51126	genome.wustl.edu	37	20	20006396	20006396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016100.3	+1	validated	p.E52*	1.000	318	0%	143	36.4%	-	-	-	-	-	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
CRNKL1	51340	genome.wustl.edu	37	20	20016860	20016860	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016652.4	-1	reviewed	p.D842	0.011	439	0%	189	19.6%	-	-	-	-	-	NULL
C20orf26	26074	genome.wustl.edu	37	20	20269267	20269267	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015585.3	+1	validated	p.F937	0.141	156	0%	74	35.1%	-	-	-	-	-	superfamily_FAD/NAD(P)-binding domain
C20orf26	26074	genome.wustl.edu	37	20	20278871	20278871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015585.3	+1	validated	p.R1088Q	0.992	224	0%	144	31.2%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
XRN2	22803	genome.wustl.edu	37	20	21328817	21328817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012255.3	+1	reviewed	p.H567N	1.000	664	0%	245	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PAX1	5075	genome.wustl.edu	37	20	21695382	21695382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006192.3	+1	validated	p.D516N	0.000	86	0%	42	38.1%	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
SSTR4	6754	genome.wustl.edu	37	20	23016664	23016664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001052.2	+1	validated	p.A182T	0.131	62	0%	46	28.3%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_7tm_1,superfamily_SSF81321
CSTL1	128817	genome.wustl.edu	37	20	23421109	23421109	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138283.1	+1	reviewed	p.R69*	0.013	280	0.7%	157	40.1%	-	-	-	-	-	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
CST11	140880	genome.wustl.edu	37	20	23433292	23433292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130794.1	-1	reviewed	p.D53N	0.000	189	0%	114	36%	-	-	benign(0.052)	tolerated(0.34)	neutral(0.026)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
CST2	1470	genome.wustl.edu	37	20	23807200	23807200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001322.2	-1	reviewed	p.G33V	0.009	213	0%	158	25.9%	-	-	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
ACSS1	84532	genome.wustl.edu	37	20	25000740	25000740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032501.2	-1	reviewed	p.F384L	1.000	200	0%	146	26%	-	-	benign(0.119)	tolerated(0.33)	neutral(0.034)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ENSG00000202414	0	genome.wustl.edu	37	20	25195393	25195393	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000365544	+1	novel	NULL	0.368	32	0%	37	37.8%	-	-	-	-	-	-
ID1	3397	genome.wustl.edu	37	20	30193445	30193445	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002165.2	+1	reviewed	p.Q85	1.000	51	0%	38	36.8%	-	-	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
MYLK2	85366	genome.wustl.edu	37	20	30409534	30409534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033118.3	+1	reviewed	p.I256V	1.000	63	0%	25	44%	-	-	benign(0.02)	tolerated(0.57)	neutral(0.007)	NULL
TTLL9	164395	genome.wustl.edu	37	20	30526965	30526965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008409.2	+1	provisional	p.R380Q	1.000	196	0%	96	43.8%	-	-	possibly_damaging(0.597)	tolerated(0.22)	neutral(0.248)	NULL
TM9SF4	9777	genome.wustl.edu	37	20	30730877	30730877	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014742.3	+1	validated	p.F207	1.000	278	0%	155	43.2%	-	-	-	-	-	HMMPfam_EMP70
DNMT3B	1789	genome.wustl.edu	37	20	31383227	31383227	+	Missense_Mutation	SNP	G	G	A	rs148132847	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006892.3	+1	reviewed	p.R380Q	0.325	255	0%	170	36.5%	-	-	benign(0.167)	tolerated(0.29)	neutral(0.044)	NULL
MAPRE1	22919	genome.wustl.edu	37	20	31427611	31427611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012325.2	+1	reviewed	p.K182N	1.000	147	0%	102	44.1%	-	-	probably_damaging(0.966)	tolerated(0.43)	neutral(0.421)	NULL
BPIFB6	128859	genome.wustl.edu	37	20	31625516	31625516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174897.2	+1	validated	p.S273F	0.974	43	0%	42	45.2%	-	-	benign(0.055)	tolerated(0.75)	neutral(0.005)	HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFB6	128859	genome.wustl.edu	37	20	31627288	31627288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174897.2	+1	validated	p.R346W	0.000	151	0%	95	17.9%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFB3	359710	genome.wustl.edu	37	20	31661400	31661400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182658.1	+1	provisional	p.V474M	1.000	273	0%	121	35.5%	-	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMSmart_BPI2
BPIFA2	140683	genome.wustl.edu	37	20	31760799	31760799	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080574.2	+1	validated	p.L73	0.000	261	0%	121	45.5%	-	-	-	-	-	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom
SNTA1	6640	genome.wustl.edu	37	20	31996570	31996570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003098.2	-1	reviewed	p.Q454H	1.000	91	0%	82	35.4%	-	-	possibly_damaging(0.886)	deleterious(0.01)	deleterious(0.752)	NULL
CBFA2T2	9139	genome.wustl.edu	37	20	32217603	32217603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005093.3	+1	reviewed	p.R380C	1.000	196	0%	98	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NHR2
CBFA2T2	9139	genome.wustl.edu	37	20	32224449	32224449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005093.3	+1	reviewed	p.S420Y	1.000	152	0%	103	36.9%	-	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
E2F1	1869	genome.wustl.edu	37	20	32264613	32264613	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005225.2	-1	reviewed	p.F413	0.984	45	0%	23	21.7%	-	-	-	-	-	NULL
CHMP4B	128866	genome.wustl.edu	37	20	32439904	32439904	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176812.4	+1	reviewed	p.E169*	1.000	322	0%	180	23.3%	-	-	-	-	-	HMMPfam_Snf7
ITCH	83737	genome.wustl.edu	37	20	33037249	33037249	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031483.4	+1	reviewed	p.E392*	1.000	559	0%	330	39.7%	-	-	-	-	-	superfamily_WW domain
GSS	2937	genome.wustl.edu	37	20	33517301	33517301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000178.2	-1	reviewed	p.E402K	0.089	246	0%	153	35.3%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_GSH_synth_ATP,superfamily_SSF56059
TRPC4AP	26133	genome.wustl.edu	37	20	33594249	33594249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015638.2	-1	validated	p.T606A	1.000	326	0.3%	201	32.3%	-	-	possibly_damaging(0.619)	tolerated(0.1)	deleterious(0.502)	NULL
TRPC4AP	26133	genome.wustl.edu	37	20	33645345	33645345	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015638.2	-1	validated	p.T148	0.995	194	0%	99	34.3%	-	-	-	-	-	NULL
PROCR	10544	genome.wustl.edu	37	20	33764528	33764528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006404.3	+1	reviewed	p.S210L	0.668	360	0%	254	37.8%	-	-	possibly_damaging(0.703)	deleterious(0.05)	deleterious(0.598)	NULL
MMP24	10893	genome.wustl.edu	37	20	33842430	33842430	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006690.3	+1	reviewed	p.G230	0.001	312	0.3%	236	38.6%	-	-	-	-	-	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
FAM83C	128876	genome.wustl.edu	37	20	33879640	33879640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178468.4	-1	validated	p.K156N	1.000	65	0%	55	27.3%	-	-	benign(0.122)	tolerated(0.22)	neutral(0.052)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
CEP250	11190	genome.wustl.edu	37	20	34065909	34065909	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425096	+1	known	p.S206*	0.414	105	0%	62	38.7%	-	-	unknown(0)	tolerated(0.42)	-	NULL
CEP250	11190	genome.wustl.edu	37	20	34078565	34078565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007186.3	+1	reviewed	p.E897K	0.903	233	0%	98	23.5%	-	-	possibly_damaging(0.525)	deleterious(0.03)	deleterious(0.541)	NULL
CEP250	11190	genome.wustl.edu	37	20	34084494	34084494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007186.3	+1	reviewed	p.R1086C	0.997	95	0%	60	35%	-	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
CEP250	11190	genome.wustl.edu	37	20	34085642	34085642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007186.3	+1	reviewed	p.T1134M	0.000	25	0%	27	25.9%	-	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
CEP250	11190	genome.wustl.edu	37	20	34092410	34092410	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007186.3	+1	reviewed	p.E2071	0.009	104	0%	41	22%	-	-	-	-	-	NULL
RBM39	9584	genome.wustl.edu	37	20	34317273	34317273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_184234.1	-1	reviewed	p.R126Q	1.000	352	0%	175	16.6%	-	-	unknown(0)	tolerated(0.11)	-	NULL
EPB41L1	2036	genome.wustl.edu	37	20	34806874	34806874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012156.2	+1	reviewed	p.S782F	1.000	81	0%	49	36.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_4_1_CTD
EPB41L1	2036	genome.wustl.edu	37	20	34809829	34809829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012156.2	+1	reviewed	p.I828T	1.000	133	0%	80	30%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_4_1_CTD
C20orf24	55969	genome.wustl.edu	37	20	35240690	35240690	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026562.1	+1	validated	NULL	0.495	172	0%	86	39.5%	-	-	-	-	-	-
SAMHD1	25939	genome.wustl.edu	37	20	35545190	35545190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015474.3	-1	reviewed	p.R333C	1.000	154	0%	70	52.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF109604
SAMHD1	25939	genome.wustl.edu	37	20	35559211	35559211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015474.3	-1	reviewed	p.E193*	0.027	242	0%	136	33.8%	-	-	-	-	-	HMMSmart_HDc,HMMPfam_HD,superfamily_SSF109604
RBL1	5933	genome.wustl.edu	37	20	35635837	35635837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002895.2	-1	reviewed	p.D950N	0.991	411	0%	209	36.8%	-	-	benign(0.039)	tolerated(0.32)	neutral(0.026)	superfamily_Cyclin-like
RPN2	6185	genome.wustl.edu	37	20	35835736	35835736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002951.3	+1	reviewed	p.E251K	1.000	206	0%	147	30.6%	-	-	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_Ribophorin_II
CTNNBL1	56259	genome.wustl.edu	37	20	36431301	36431301	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030877.3	+1	reviewed	p.K355T	1.000	271	0%	141	32.6%	-	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	superfamily_ARM repeat
KIAA1755	85449	genome.wustl.edu	37	20	36848064	36848064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029864.1	-1	predicted	p.R842C	0.953	108	0%	73	17.8%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
KIAA1755	85449	genome.wustl.edu	37	20	36869028	36869028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029864.1	-1	predicted	p.S502Y	0.025	478	0%	286	33.2%	-	-	possibly_damaging(0.923)	deleterious(0.04)	deleterious(0.722)	NULL
BPI	671	genome.wustl.edu	37	20	36953197	36953197	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417318	+1	known	p.F148L	0.009	311	0%	157	29.3%	-	-	-	-	-	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
LBP	3929	genome.wustl.edu	37	20	36992639	36992639	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004139.2	+1	reviewed	p.E221	0.286	203	0%	126	29.4%	-	-	-	-	-	HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
RALGAPB	57148	genome.wustl.edu	37	20	37175000	37175000	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020336.2	+1	validated	p.H943	1.000	285	0%	155	34.8%	-	-	-	-	-	NULL
ARHGAP40	343578	genome.wustl.edu	37	20	37263262	37263262	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373345	+1	known	e5-1	1.000	124	0%	51	33.3%	-	-	-	-	-	-
ARHGAP40	343578	genome.wustl.edu	37	20	37267421	37267421	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373345	+1	known	p.E300D	0.998	298	0.3%	164	15.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ARHGAP40	343578	genome.wustl.edu	37	20	37278479	37278479	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373346	+1	known	p.E151*	1.000	266	0%	158	13.9%	-	-	probably_damaging(0.961)	tolerated(0.12)	deleterious(0.665)	NULL
ACTR5	79913	genome.wustl.edu	37	20	37378808	37378808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024855.3	+1	validated	p.K177N	0.129	396	0.3%	197	45.2%	-	-	benign(0.055)	tolerated(0.09)	neutral(0.300)	HMMPfam_Actin,HMMSmart_ACTIN
DHX35	60625	genome.wustl.edu	37	20	37601222	37601222	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021931.2	+1	reviewed	p.Y65	1.000	490	0%	230	27.8%	-	-	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PLCG1	5335	genome.wustl.edu	37	20	39798786	39798786	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002660.2	+1	reviewed	p.F895	1.000	138	0%	109	28.4%	-	-	-	-	-	HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729
PLCG1	5335	genome.wustl.edu	37	20	39802942	39802942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002660.2	+1	reviewed	p.R1275Q	0.992	78	0%	51	39.2%	-	-	benign(0.285)	tolerated(0.12)	neutral(0.348)	NULL
ZHX3	23051	genome.wustl.edu	37	20	39830723	39830723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015035.3	-1	reviewed	p.S945L	0.000	96	0%	67	34.3%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
EMILIN3	90187	genome.wustl.edu	37	20	39990896	39990896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052846.1	-1	validated	p.G438A	0.981	185	0%	83	30.1%	-	-	probably_damaging(0.98)	tolerated(0.27)	neutral(0.458)	NULL
EMILIN3	90187	genome.wustl.edu	37	20	39991404	39991404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052846.1	-1	validated	p.L269I	1.000	81	1.2%	98	34.7%	-	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
SRSF6	6431	genome.wustl.edu	37	20	42089576	42089576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006275.5	+1	reviewed	p.S303L	0.998	221	0%	115	36.5%	-	-	unknown(0)	tolerated(0.15)	-	NULL
MYBL2	4605	genome.wustl.edu	37	20	42340188	42340188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002466.2	+1	reviewed	p.E556K	1.000	215	0%	93	36.6%	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_Cmyb_C
TOX2	84969	genome.wustl.edu	37	20	42697357	42697357	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372992	+1	known	p.A124	0.162	313	0%	178	35.4%	-	-	-	-	-	NULL
TOX2	84969	genome.wustl.edu	37	20	42697448	42697448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372992	+1	known	p.P155S	0.002	113	0%	88	35.2%	-	-	unknown(0)	-	-	NULL
TOX2	84969	genome.wustl.edu	37	20	42697530	42697530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372992	+1	known	p.R182I	1.000	50	0%	29	41.4%	-	-	unknown(0)	-	-	NULL
HNF4A	3172	genome.wustl.edu	37	20	43052754	43052754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000457.3	+1	reviewed	p.S330L	0.999	31	0%	25	28%	-	-	possibly_damaging(0.949)	tolerated(0.1)	deleterious(0.679)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
SERINC3	10955	genome.wustl.edu	37	20	43132547	43132547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006811.2	-1	validated	p.T322A	0.465	399	0%	180	34.4%	-	-	benign(0.003)	tolerated(0.88)	-	HMMPfam_Serinc
SERINC3	10955	genome.wustl.edu	37	20	43142613	43142613	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006811.2	-1	validated	p.T36	0.001	312	0%	184	38%	-	-	-	-	-	HMMPfam_Serinc
PKIG	11142	genome.wustl.edu	37	20	43243209	43243209	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007066.3	+1	reviewed	p.V4	0.932	87	0%	60	33.3%	-	-	-	-	-	HMMPfam_PKI
LOC100287145	100287145	genome.wustl.edu	37	20	43805018	43805018	+	Missense_Mutation	SNP	C	C	T	rs149499381	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343707.1	-1	model	p.G46S	0.000	17	0.000	4	1.000	-	-	-	-	-	NULL
SEMG1	6406	genome.wustl.edu	37	20	43836054	43836054	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003007.3	+1	reviewed	p.F39C	0.000	222	0%	118	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Semenogelin
SEMG2	6407	genome.wustl.edu	37	20	43851217	43851217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003008.2	+1	reviewed	p.S315Y	0.000	236	0%	120	35.8%	-	-	probably_damaging(0.998)	tolerated(0.79)	deleterious(0.475)	HMMPfam_Semenogelin
SLPI	6590	genome.wustl.edu	37	20	43882222	43882222	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003064.2	-1	reviewed	p.N80H	0.000	286	0%	161	12.4%	-	-	benign(0.397)	tolerated(0.15)	neutral(0.368)	NULL
WFDC3	140686	genome.wustl.edu	37	20	44404062	44404062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080614.1	-1	reviewed	p.E225K	0.000	235	0%	151	37.1%	-	-	benign(0.002)	tolerated(0.63)	neutral(0.004)	NULL
ZNF335	63925	genome.wustl.edu	37	20	44581253	44581253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022095.3	-1	reviewed	p.Q933R	1.000	118	0%	107	37.4%	-	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
MMP9	4318	genome.wustl.edu	37	20	44642168	44642168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004994.2	+1	reviewed	p.K535N	1.000	52	0%	33	27.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
SLC12A5	57468	genome.wustl.edu	37	20	44682330	44682330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134771.1	+1	reviewed	p.E910D	1.000	302	0%	178	33.1%	-	-	benign(0.004)	tolerated(0.23)	neutral(0.042)	NULL
CD40	958	genome.wustl.edu	37	20	44757566	44757566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001250.4	+1	reviewed	p.D241N	0.007	161	0%	92	48.9%	-	-	possibly_damaging(0.907)	tolerated(0.24)	neutral(0.398)	NULL
SLC35C2	51006	genome.wustl.edu	37	20	44979457	44979457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015945.10	-1	reviewed	p.A304T	1.000	69	0%	46	32.6%	-	-	possibly_damaging(0.555)	tolerated(0.05)	deleterious(0.535)	HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE
ZNF334	55713	genome.wustl.edu	37	20	45131124	45131124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018102.3	-1	validated	p.R285I	0.994	243	0%	116	40.5%	-	-	benign(0.018)	deleterious(0)	neutral(0.445)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF334	55713	genome.wustl.edu	37	20	45131654	45131654	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018102.3	-1	validated	p.L108	0.000	358	0%	203	34.5%	-	-	-	-	-	NULL
SLC2A10	81031	genome.wustl.edu	37	20	45354005	45354005	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030777.3	+1	reviewed	p.F110	0.108	91	0%	57	12.3%	-	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
ZMYND8	23613	genome.wustl.edu	37	20	45910866	45910866	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000467200	-1	known	p.I233V	0.984	206	0%	131	42%	-	-	-	-	-	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
PREX1	57580	genome.wustl.edu	37	20	47258745	47258745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020820.3	-1	reviewed	p.E1246K	1.000	184	0%	125	32.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC100287206	100287206	genome.wustl.edu	37	20	47259195	47259195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343709.1	+1	model	p.S437F	0.973	28	0%	16	43.8%	-	-	-	-	-	NULL
ENSG00000245952	0	genome.wustl.edu	37	20	47274582	47274582	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456747	+1	known	NULL	0.000	122	0%	68	25%	-	-	-	-	-	-
PREX1	57580	genome.wustl.edu	37	20	47361666	47361666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020820.3	-1	reviewed	p.E104K	1.000	161	0%	77	28.6%	-	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
STAU1	6780	genome.wustl.edu	37	20	47734404	47734404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017453.2	-1	reviewed	p.K473N	1.000	254	0%	173	30.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC100131544	100131544	genome.wustl.edu	37	20	47858409	47858409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716051.1	-1	model	p.K43Q	0.000	181	0%	71	33.8%	-	-	unknown(0)	-	-	NULL
ZNFX1	57169	genome.wustl.edu	37	20	47886956	47886956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021035.2	-1	validated	p.L465I	1.000	150	0%	86	41.9%	-	-	possibly_damaging(0.94)	tolerated(0.22)	neutral(0.427)	NULL
KCNB1	3745	genome.wustl.edu	37	20	47991306	47991306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004975.2	-1	reviewed	p.A264V	1.000	177	0%	120	10.8%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Ion_trans,superfamily_SSF81324
KCNB1	3745	genome.wustl.edu	37	20	48098684	48098684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004975.2	-1	reviewed	p.A112T	1.000	108	0%	85	35.3%	-	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
SLC9A8	23315	genome.wustl.edu	37	20	48491338	48491338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015266.1	+1	validated	p.R352H	1.000	496	0%	251	36.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Na_H_Exchanger
SPATA2	9825	genome.wustl.edu	37	20	48522218	48522218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135773.1	-1	validated	p.F501V	1.000	621	0.2%	326	33.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TMEM189	387521	genome.wustl.edu	37	20	48744613	48744613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199129.2	-1	reviewed	p.R197H	0.078	285	0%	248	27%	-	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_Kua-UEV1_localn
DPM1	8813	genome.wustl.edu	37	20	49552688	49552688	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371584	-1	known	p.R260*	0.760	230	0%	93	34.4%	-	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
LOC100128598	100128598	genome.wustl.edu	37	20	49626168	49626168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716142.1	+1	model	p.E352K	0.973	32	0%	33	33.3%	-	-	-	-	-	NULL
KCNG1	3755	genome.wustl.edu	37	20	49626686	49626686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002237.3	-1	reviewed	p.R64W	0.592	41	0%	42	31%	-	-	benign(0.242)	deleterious(0.03)	neutral(0.389)	HMMSmart_SM00225,superfamily_POZ domain
ATP9A	10079	genome.wustl.edu	37	20	50230252	50230252	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006045.1	-1	validated	p.F845	0.998	85	0%	77	13%	-	-	-	-	-	NULL
SALL4	57167	genome.wustl.edu	37	20	50407042	50407042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.E660D	0.940	99	0%	81	45.7%	-	-	possibly_damaging(0.661)	tolerated(0.25)	neutral(0.271)	NULL
SALL4	57167	genome.wustl.edu	37	20	50407730	50407730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.R431Q	1.000	119	0%	58	31%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SALL4	57167	genome.wustl.edu	37	20	50408000	50408000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.S341L	0.979	106	0.9%	57	38.6%	-	-	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
ZFP64	55734	genome.wustl.edu	37	20	50701129	50701129	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199427.2	-1	validated	p.L635	0.721	35	0%	32	18.8%	-	-	-	-	-	NULL
ZNF217	7764	genome.wustl.edu	37	20	52193251	52193251	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006526.2	-1	validated	p.E684	0.296	172	0%	135	38.5%	-	-	-	-	-	NULL
BCAS1	8537	genome.wustl.edu	37	20	52570152	52570152	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422805	-1	known	p.R163*	0.217	688	0.1%	426	35.4%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
BCAS1	8537	genome.wustl.edu	37	20	52612457	52612457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003657.2	-1	reviewed	p.S286A	0.026	220	0%	134	36.6%	-	-	benign(0.164)	deleterious(0)	neutral(0.460)	NULL
CYP24A1	1591	genome.wustl.edu	37	20	52788167	52788167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000782.4	-1	reviewed	p.K164N	1.000	445	0%	273	35.2%	-	-	benign(0.017)	deleterious(0.01)	neutral(0.406)	HMMPfam_p450,superfamily_Cytochrome_P450
CBLN4	140689	genome.wustl.edu	37	20	54573756	54573756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080617.4	-1	reviewed	p.D155Y	1.000	185	0%	103	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
CASS4	57091	genome.wustl.edu	37	20	55027303	55027303	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020356.3	+1	validated	p.S357	0.000	115	0%	71	29.6%	-	-	-	-	-	NULL
C20orf43	51507	genome.wustl.edu	37	20	55093154	55093154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016407.3	+1	validated	p.S252G	0.000	43	0%	33	30.3%	-	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_DUF602
SPO11	23626	genome.wustl.edu	37	20	55913406	55913406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012444.2	+1	reviewed	p.F273L	1.000	335	0%	169	36.1%	-	-	benign(0.002)	tolerated(1)	-	superfamily_DNA topoisomerase IV alpha subunit
RAE1	8480	genome.wustl.edu	37	20	55941950	55941950	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015885.1	+1	reviewed	e5+1	1.000	543	0%	344	38.7%	-	-	-	-	-	-
CTCFL	140690	genome.wustl.edu	37	20	56073645	56073645	+	Silent	SNP	G	G	A	rs111292204	byCluster;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080618.2	-1	reviewed	p.G651	0.002	196	0%	138	31.9%	-	-	-	-	-	NULL
C20orf85	128602	genome.wustl.edu	37	20	56730522	56730522	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178456.2	+1	validated	e3-2	0.871	256	0%	129	37.2%	-	-	-	-	-	-
GNAS	2778	genome.wustl.edu	37	20	57428374	57428374	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080425.2	+1	reviewed	p.I18	0.998	29	0%	16	31.2%	-	-	-	-	-	NULL
TH1L	51497	genome.wustl.edu	37	20	57564045	57564045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198976.1	+1	reviewed	p.P167Q	1.000	206	0%	115	11.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TH1
TH1L	51497	genome.wustl.edu	37	20	57566977	57566977	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198976.1	+1	reviewed	p.T386	0.007	264	0%	152	32.9%	-	-	-	-	-	HMMPfam_TH1
TUBB1	81027	genome.wustl.edu	37	20	57598975	57598975	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030773.2	+1	validated	p.N165H	1.000	174	0%	133	36.8%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
ATP5E	514	genome.wustl.edu	37	20	57605476	57605476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001977.1	-1	reviewed	p.R14Q	0.994	275	0%	167	34.7%	-	-	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	HMMPfam_ATP-synt_Eps,superfamily_ATP_synth_E
PHACTR3	116154	genome.wustl.edu	37	20	58381108	58381108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080672.3	+1	reviewed	p.R396Q	1.000	184	0%	58	22.4%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
PHACTR3	116154	genome.wustl.edu	37	20	58416496	58416496	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080672.3	+1	reviewed	p.L498R	1.000	227	0%	95	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00707
SYCP2	10388	genome.wustl.edu	37	20	58452571	58452571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.I1007V	0.001	314	0%	107	40.2%	-	-	benign(0)	tolerated(1)	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58455428	58455428	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.P957	0.212	686	0%	297	34.7%	-	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58455433	58455433	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.E956*	0.995	674	0%	293	37.9%	-	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58482446	58482446	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.E336*	1.000	281	0%	125	15.2%	-	-	-	-	-	NULL
CDH26	60437	genome.wustl.edu	37	20	58559775	58559775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177980.2	+1	reviewed	p.S208Y	1.000	437	0%	207	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
HRH3	11255	genome.wustl.edu	37	20	60791110	60791110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007232.2	-1	validated	p.Q430H	0.982	159	0%	91	38.5%	-	-	possibly_damaging(0.7)	tolerated(0.06)	deleterious(0.574)	superfamily_Family A G protein-coupled receptor-like
LAMA5	3911	genome.wustl.edu	37	20	60887690	60887690	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005560.3	-1	reviewed	p.P3075	0.000	37	0%	22	31.8%	-	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
LAMA5	3911	genome.wustl.edu	37	20	60927097	60927097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005560.3	-1	reviewed	p.M242I	1.000	50	0%	28	32.1%	-	-	benign(0.045)	tolerated(0.37)	neutral(0.021)	HMMPfam_Laminin_N,HMMSmart_SM00136
MIR133A2	406923	genome.wustl.edu	37	20	61162152	61162152	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000347538	+1	known	NULL	1.000	135	0%	51	29.4%	-	-	-	-	-	-
SLCO4A1	28231	genome.wustl.edu	37	20	61296286	61296286	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016354.3	+1	validated	p.L374	1.000	133	0%	90	35.6%	-	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
NTSR1	4923	genome.wustl.edu	37	20	61340982	61340982	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002531.2	+1	reviewed	p.C141	1.000	45	0%	45	13.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OGFR	11054	genome.wustl.edu	37	20	61442874	61442874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370469	+1	known	p.W31*	1.000	53	0%	27	29.6%	-	-	-	-	-	NULL
OGFR	11054	genome.wustl.edu	37	20	61443643	61443643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007346.2	+1	reviewed	p.E226K	0.995	42	0%	38	26.3%	-	-	possibly_damaging(0.907)	tolerated(0.08)	deleterious(0.660)	HMMPfam_OGFr_N
OGFR	11054	genome.wustl.edu	37	20	61444461	61444461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007346.2	+1	reviewed	p.N498K	0.000	69	0%	54	31.5%	-	-	probably_damaging(0.959)	tolerated(0.37)	neutral(0.422)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61511908	61511908	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.F1800	0.223	79	0%	55	38.2%	-	-	-	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61528315	61528315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.A541V	0.000	38	0%	23	39.1%	-	-	benign(0.072)	tolerated(0.63)	neutral(0.009)	NULL
YTHDF1	54915	genome.wustl.edu	37	20	61845257	61845257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017798.3	-1	validated	p.D31Y	1.000	302	0%	97	24.7%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
COL20A1	57642	genome.wustl.edu	37	20	61936857	61936857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020882.2	+1	validated	p.Q94H	1.000	84	0%	46	37%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KCNQ2	3785	genome.wustl.edu	37	20	62039859	62039859	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172107.2	-1	reviewed	p.A598	0.000	28	0%	26	42.3%	-	-	-	-	-	HMMPfam_KCNQ_channel
KCNQ2	3785	genome.wustl.edu	37	20	62059789	62059789	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172107.2	-1	reviewed	e10-1	1.000	80	0%	44	38.6%	-	-	-	-	-	-
SRMS	6725	genome.wustl.edu	37	20	62173895	62173895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080823.2	-1	provisional	p.E229K	0.997	102	0%	58	36.2%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_Kinase_like,superfamily_SSF55550
STMN3	50861	genome.wustl.edu	37	20	62275244	62275244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015894.2	-1	reviewed	p.Q52H	1.000	83	0%	38	47.4%	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_Stathmin,superfamily_Stathmin
RTEL1	51750	genome.wustl.edu	37	20	62293771	62293771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356810	+1	known	p.V140I	0.000	43	0%	45	26.7%	-	-	possibly_damaging(0.737)	tolerated(0.68)	neutral(0.272)	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB46	140685	genome.wustl.edu	37	20	62421760	62421760	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025224.2	-1	provisional	p.I117	0.887	19	0%	24	29.2%	-	-	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
TCEA2	6919	genome.wustl.edu	37	20	62701639	62701639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003195.4	+1	reviewed	p.D182Y	1.000	144	0%	70	25.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
MYT1	4661	genome.wustl.edu	37	20	62848445	62848445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004535.2	+1	reviewed	p.E553K	1.000	75	0%	42	40.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PCMTD2	55251	genome.wustl.edu	37	20	62904753	62904753	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018257.2	+1	validated	p.E296*	1.000	214	0%	83	32.5%	-	-	-	-	-	NULL
PCMTD2	55251	genome.wustl.edu	37	20	62904873	62904873	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018257.2	+1	validated	p.N336H	1.000	256	0%	93	32.3%	-	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
TPTE	7179	genome.wustl.edu	37	21	10942994	10942994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.R198Q	1.000	658	0%	247	10.9%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_Voltage-gated potassium channels
SAMSN1	64092	genome.wustl.edu	37	21	15873047	15873047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022136.3	-1	validated	p.I191F	1.000	451	0%	281	33.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
SAMSN1	64092	genome.wustl.edu	37	21	15893508	15893508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022136.3	-1	validated	p.R31Q	1.000	121	0%	53	26.4%	-	-	probably_damaging(0.997)	tolerated(0.21)	deleterious(0.510)	NULL
NRIP1	8204	genome.wustl.edu	37	21	16339307	16339307	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003489.3	-1	reviewed	p.S403R	0.997	470	0%	254	32.3%	-	-	probably_damaging(0.996)	tolerated(0.31)	deleterious(0.489)	NULL
USP25	29761	genome.wustl.edu	37	21	17203948	17203948	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013396.3	+1	validated	p.E665*	1.000	233	0%	117	31.6%	-	-	-	-	-	NULL
USP25	29761	genome.wustl.edu	37	21	17246810	17246810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013396.3	+1	validated	p.E922K	1.000	436	0%	234	30.3%	-	-	benign(0.016)	tolerated(0.62)	neutral(0.005)	NULL
C21orf91	54149	genome.wustl.edu	37	21	19169402	19169402	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100420.1	-1	validated	p.S54*	1.000	120	0%	32	40.6%	-	-	-	-	-	HMMPfam_EURL
CHODL	140578	genome.wustl.edu	37	21	19628911	19628911	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024944.2	+1	reviewed	p.Q55	1.000	142	0%	67	44.8%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TMPRSS15	5651	genome.wustl.edu	37	21	19737495	19737495	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002772.2	-1	reviewed	p.K245	0.000	321	0%	146	28.8%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TMPRSS15	5651	genome.wustl.edu	37	21	19756016	19756016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002772.2	-1	reviewed	p.Q142K	1.000	516	0%	238	37%	-	-	benign(0.054)	tolerated(0.56)	neutral(0.010)	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
TMPRSS15	5651	genome.wustl.edu	37	21	19770219	19770219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002772.2	-1	reviewed	p.K107N	0.190	76	0%	38	26.3%	-	-	possibly_damaging(0.803)	tolerated(0.13)	deleterious(0.555)	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
NCAM2	4685	genome.wustl.edu	37	21	22658606	22658606	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004540.2	+1	reviewed	p.E119*	1.000	309	0%	156	28.8%	-	-	-	-	-	superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22804553	22804553	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004540.2	+1	reviewed	p.E536*	1.000	214	0%	106	31.1%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
JAM2	58494	genome.wustl.edu	37	21	27081748	27081748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021219.2	+1	reviewed	p.E270*	0.995	283	0%	151	36.4%	-	-	-	-	-	NULL
LOC100288213	100288213	genome.wustl.edu	37	21	27254002	27254002	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343739.1	+1	model	p.E27*	1.000	189	0%	167	35.9%	-	-	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	NULL
APP	351	genome.wustl.edu	37	21	27328066	27328066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000484.3	-1	reviewed	p.R488C	0.998	512	0.2%	310	32.3%	-	-	benign(0.384)	deleterious(0.01)	deleterious(0.528)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
APP	351	genome.wustl.edu	37	21	27425587	27425587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000484.3	-1	reviewed	p.E145K	1.000	250	0%	130	33.8%	-	-	benign(0.151)	tolerated(0.11)	neutral(0.285)	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_Amyloid beta a4 protein copper binding domain (domain 2)
ADAMTS1	9510	genome.wustl.edu	37	21	28213375	28213375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006988.3	-1	reviewed	p.S440R	0.795	207	0%	127	35.4%	-	-	benign(0.163)	tolerated(0.18)	neutral(0.071)	HMMPfam_Reprolysin,superfamily_SSF55486
ADAMTS5	11096	genome.wustl.edu	37	21	28296459	28296459	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007038.3	-1	reviewed	p.C902	1.000	166	0%	91	41.8%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS5	11096	genome.wustl.edu	37	21	28327064	28327064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007038.3	-1	reviewed	p.E411K	1.000	135	0%	83	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,superfamily_Metalloproteases (""zincins"") catalytic domain"
LTN1	26046	genome.wustl.edu	37	21	30303603	30303603	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015565.2	-1	validated	p.N1704	0.998	321	0.3%	189	34.4%	-	-	-	-	-	NULL
LTN1	26046	genome.wustl.edu	37	21	30357196	30357196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015565.2	-1	validated	p.K131N	1.000	371	0%	163	42.3%	-	-	possibly_damaging(0.736)	tolerated(0.06)	deleterious(0.592)	superfamily_ARM repeat
USP16	10600	genome.wustl.edu	37	21	30419197	30419197	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032410.1	+1	reviewed	p.I522	0.000	182	0%	61	31.1%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP16	10600	genome.wustl.edu	37	21	30421166	30421166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032410.1	+1	reviewed	p.R699I	1.000	340	0%	204	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
C21orf7	56911	genome.wustl.edu	37	21	30547097	30547097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020152.2	+1	provisional	p.R205W	0.998	296	0%	145	31.7%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
GRIK1	2897	genome.wustl.edu	37	21	30927384	30927384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000830.3	-1	reviewed	p.D866Y	1.000	208	0%	94	29.8%	-	-	benign(0.045)	tolerated(0.12)	neutral(0.263)	NULL
KRTAP13-4	284827	genome.wustl.edu	37	21	31802662	31802662	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181600.1	+1	provisional	p.G23	0.000	204	0%	110	24.5%	-	-	-	-	-	HMMPfam_PMG
KRTAP19-3	337970	genome.wustl.edu	37	21	31864175	31864175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181609.3	-1	validated	p.R34I	0.005	476	0%	313	31.3%	-	-	unknown(0)	-	-	NULL
TIAM1	7074	genome.wustl.edu	37	21	32624386	32624386	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003253.2	-1	validated	p.T361	0.266	92	0%	83	36.1%	-	-	-	-	-	NULL
SCAF4	57466	genome.wustl.edu	37	21	33074606	33074606	+	Silent	SNP	C	C	T	rs140603862	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.A136	0.993	352	0%	187	38.5%	-	-	-	-	-	HMMSmart_SM00582,superfamily_ENTH/VHS domain
MRAP	56246	genome.wustl.edu	37	21	33686879	33686879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206898.1	+1	reviewed	p.S75Y	0.000	155	0%	85	37.6%	-	-	unknown(0)	deleterious(0)	-	NULL
URB1	9875	genome.wustl.edu	37	21	33696875	33696875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014825.2	-1	validated	p.R1720Q	0.980	206	0%	71	21.1%	-	-	benign(0.417)	tolerated(0.49)	neutral(0.146)	superfamily_ARM repeat
SYNJ1	8867	genome.wustl.edu	37	21	34011986	34011986	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418301	-1	known	p.R52*	0.000	328	0%	168	38.7%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34018096	34018096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003895.3	-1	validated	p.S1084Y	1.000	16	0%	26	23.1%	-	-	benign(0.313)	deleterious(0.02)	deleterious(0.481)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34045731	34045731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003895.3	-1	validated	p.R549C	1.000	414	0%	226	13.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SYNJ1	8867	genome.wustl.edu	37	21	34072370	34072370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003895.3	-1	validated	p.S86Y	1.000	143	0%	65	24.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Syja_N
GCFC1	94104	genome.wustl.edu	37	21	34131546	34131546	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016631.3	-1	reviewed	p.R410	0.996	463	0%	225	29.8%	-	-	-	-	-	HMMPfam_GCFC
GCFC1	94104	genome.wustl.edu	37	21	34134560	34134560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016631.3	-1	reviewed	p.D240N	1.000	314	0%	191	40.3%	-	-	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	NULL
IFNGR2	3460	genome.wustl.edu	37	21	34805173	34805173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005534.3	+1	reviewed	p.E292K	0.961	249	0%	150	35.3%	-	-	benign(0.1)	tolerated(0.34)	neutral(0.030)	NULL
DNAJC28	54943	genome.wustl.edu	37	21	34861073	34861073	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040192.1	-1	validated	p.E210*	1.000	416	0%	246	44.7%	-	-	-	-	-	HMMPfam_DUF1992
SON	6651	genome.wustl.edu	37	21	34922186	34922186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.V217I	0.148	98	0%	58	27.6%	-	-	benign(0.07)	deleterious(0.05)	neutral(0.350)	NULL
SON	6651	genome.wustl.edu	37	21	34923523	34923523	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.S662	1.000	128	0%	84	13.1%	-	-	-	-	-	NULL
SON	6651	genome.wustl.edu	37	21	34929588	34929588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.K2096T	1.000	210	0%	99	22.2%	-	-	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	NULL
CRYZL1	9946	genome.wustl.edu	37	21	34988840	34988840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413017	-1	known	p.R111Q	0.000	48	0%	31	35.5%	-	-	unknown(0)	-	-	NULL
KCNE2	9992	genome.wustl.edu	37	21	35743082	35743082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172201.1	+1	reviewed	p.N102I	0.019	118	0%	82	41.5%	-	-	benign(0.039)	deleterious(0.02)	neutral(0.385)	NULL
CLIC6	54102	genome.wustl.edu	37	21	36079618	36079618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053277.1	+1	reviewed	p.S472Y	1.000	482	0%	294	29.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Thioredoxin-like
CLIC6	54102	genome.wustl.edu	37	21	36081026	36081026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053277.1	+1	reviewed	p.E547K	1.000	116	0%	55	47.3%	-	-	benign(0.262)	deleterious(0.01)	neutral(0.433)	superfamily_Glutathione S-transferase (GST) C-terminal domain
SETD4	54093	genome.wustl.edu	37	21	37420633	37420633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017438.3	-1	validated	p.R90Q	0.004	230	0%	150	30%	-	-	benign(0.019)	tolerated(0.65)	neutral(0.004)	HMMPfam_SET,superfamily_SET domain
CBR3	874	genome.wustl.edu	37	21	37510203	37510203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001236.3	+1	reviewed	p.E124K	0.746	369	0.8%	212	31.6%	-	-	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_adh_short,superfamily_NAD(P)-bd
CLDN14	23562	genome.wustl.edu	37	21	37833709	37833709	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012130.2	-1	reviewed	p.C95	0.072	33	0%	31	32.3%	-	-	-	-	-	HMMPfam_PMP22_Claudin
HLCS	3141	genome.wustl.edu	37	21	38302735	38302735	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000411.5	-1	reviewed	e3-2	0.996	328	0%	168	32.1%	-	-	-	-	-	-
TTC3	7267	genome.wustl.edu	37	21	38467695	38467695	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.E245*	0.995	260	0%	108	29.6%	-	-	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38534366	38534366	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	e30+1	0.963	143	0%	47	38.3%	-	-	-	-	-	-
TTC3	7267	genome.wustl.edu	37	21	38536423	38536423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.E1081K	1.000	248	0%	121	38.8%	-	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38538153	38538153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.E1213K	0.998	222	0%	85	34.1%	-	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38544951	38544951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.E1508K	0.971	278	0%	115	33%	-	-	benign(0.071)	deleterious(0.04)	neutral(0.354)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38572566	38572566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.E1962K	0.031	223	0%	109	11%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
DYRK1A	1859	genome.wustl.edu	37	21	38852962	38852962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001396.3	+1	reviewed	p.R117Q	1.000	295	0%	135	40.7%	-	-	possibly_damaging(0.919)	tolerated(0.05)	deleterious(0.715)	NULL
KCNJ6	3763	genome.wustl.edu	37	21	38997521	38997521	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002240.2	-1	reviewed	p.L404	0.000	642	0%	327	31.8%	-	-	-	-	-	NULL
KCNJ6	3763	genome.wustl.edu	37	21	38997691	38997691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002240.2	-1	reviewed	p.E348K	1.000	313	0%	209	37.3%	-	-	probably_damaging(0.973)	tolerated(0.49)	neutral(0.425)	HMMPfam_IRK,superfamily_Ig_E-set
ETS2	2114	genome.wustl.edu	37	21	40185005	40185005	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005239.4	+1	validated	p.E51*	1.000	430	0%	240	32.9%	-	-	-	-	-	NULL
ETS2	2114	genome.wustl.edu	37	21	40194729	40194729	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005239.4	+1	validated	p.F442	0.989	205	0%	129	34.1%	-	-	-	-	-	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
PSMG1	8624	genome.wustl.edu	37	21	40550511	40550511	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003720.2	-1	validated	p.T173	0.469	350	0%	184	34.8%	-	-	-	-	-	NULL
BRWD1	54014	genome.wustl.edu	37	21	40568602	40568602	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.S2131	0.040	528	0%	314	32.2%	-	-	-	-	-	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40604198	40604198	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.R969*	1.000	291	0%	124	36.3%	-	-	-	-	-	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40608627	40608627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.R887Q	0.009	407	0%	235	21.7%	-	-	probably_damaging(0.97)	tolerated(0.06)	deleterious(0.735)	superfamily_WD40 repeat-like
LCA5L	150082	genome.wustl.edu	37	21	40794942	40794942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152505.3	-1	validated	p.I266S	0.000	504	0%	280	10.4%	-	-	benign(0.006)	tolerated(0.57)	neutral(0.006)	NULL
LCA5L	150082	genome.wustl.edu	37	21	40795315	40795315	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152505.3	-1	validated	p.R142*	0.145	101	0%	70	12.9%	-	-	-	-	-	NULL
IGSF5	150084	genome.wustl.edu	37	21	41118179	41118179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080444.1	+1	provisional	p.W18C	0.337	55	0%	40	35%	-	-	benign(0.049)	-	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41452085	41452085	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.G1472*	0.998	273	0%	123	31.7%	-	-	-	-	-	superfamily_Fibronectin type III
DSCAM	1826	genome.wustl.edu	37	21	41711296	41711296	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.S419R	0.999	117	0%	80	42.5%	-	-	benign(0.093)	tolerated(0.56)	neutral(0.013)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
BACE2	25825	genome.wustl.edu	37	21	42613768	42613768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012105.3	+1	reviewed	p.F214S	1.000	241	0%	156	35.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Asp,superfamily_Acid proteases
BACE2	25825	genome.wustl.edu	37	21	42629207	42629207	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012105.3	+1	reviewed	p.F419	0.987	157	0%	100	17%	-	-	-	-	-	HMMPfam_Asp,superfamily_Acid proteases
MX2	4600	genome.wustl.edu	37	21	42767678	42767678	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002463.1	+1	reviewed	p.E346*	0.939	209	0%	109	38.5%	-	-	-	-	-	HMMPfam_Dynamin_M,superfamily_SSF52540
MX2	4600	genome.wustl.edu	37	21	42780136	42780136	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002463.1	+1	reviewed	p.Q708	0.117	121	0%	83	27.7%	-	-	-	-	-	HMMPfam_GED,HMMSmart_GED
MX1	4599	genome.wustl.edu	37	21	42823124	42823124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144925.1	+1	reviewed	p.S488L	0.080	370	0.5%	204	30.9%	-	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_Dynamin_M
TMPRSS2	7113	genome.wustl.edu	37	21	42870117	42870117	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005656.3	-1	reviewed	e1-1	0.998	247	0%	121	42.1%	-	-	-	-	-	-
PRDM15	63977	genome.wustl.edu	37	21	43230570	43230570	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022115.3	-1	validated	p.C1230	0.999	29	0%	42	21.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
PRDM15	63977	genome.wustl.edu	37	21	43259754	43259754	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022115.3	-1	validated	p.I649	0.000	332	0%	172	44.2%	-	-	-	-	-	NULL
ZNF295	49854	genome.wustl.edu	37	21	43412353	43412353	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098402.1	-1	validated	p.F618V	1.000	198	0%	125	40%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ZNF295-AS1	150142	genome.wustl.edu	37	21	43444960	43444960	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027273.1	+1	validated	NULL	0.000	35	0%	30	40%	-	-	-	-	-	-
UBASH3A	53347	genome.wustl.edu	37	21	43857674	43857675	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018961.2	+1	validated	p.L491fs	0.994:0.993	-	-	-	-	-	-	-	-	-	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
LINC00313	114038	genome.wustl.edu	37	21	44891483	44891483	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026863.1	-1	predicted	NULL	0.000	69	0%	50	40%	-	-	-	-	-	-
HSF2BP	11077	genome.wustl.edu	37	21	45077960	45077960	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007031.1	-1	reviewed	p.A6	0.000	8	0.000	18	0.222	-	-	-	-	-	NULL
RRP1B	23076	genome.wustl.edu	37	21	45094523	45094523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015056.2	+1	validated	p.R122C	0.977	269	0%	115	33%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nop52
TRAPPC10	7109	genome.wustl.edu	37	21	45479370	45479370	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380221	+1	known	p.S272*	0.000	234	0%	135	43.7%	-	-	-	-	-	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45483619	45483619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.A331T	1.000	152	0%	87	36.8%	-	-	benign(0.372)	tolerated(0.49)	neutral(0.129)	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45507669	45507669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.E877K	1.000	177	0%	111	38.7%	-	-	benign(0.15)	tolerated(0.65)	neutral(0.016)	NULL
PWP2	5822	genome.wustl.edu	37	21	45548501	45548501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005049.2	+1	validated	p.S860L	1.000	60	0%	35	31.4%	-	-	probably_damaging(0.996)	tolerated(0.22)	deleterious(0.504)	HMMPfam_PWP2
DNMT3L	29947	genome.wustl.edu	37	21	45666336	45666336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013369.2	-1	reviewed	p.L370I	0.993	108	0%	59	50.8%	-	-	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	NULL
DNMT3L	29947	genome.wustl.edu	37	21	45679527	45679527	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013369.2	-1	reviewed	p.C73	0.011	214	0.5%	186	38.7%	-	-	-	-	-	NULL
AIRE	326	genome.wustl.edu	37	21	45709596	45709596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000383.2	+1	reviewed	p.E237K	0.448	37	0%	15	46.7%	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_SAND,HMMSmart_SM00258,superfamily_SAND domain-like
TRPM2	7226	genome.wustl.edu	37	21	45826645	45826645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003307.3	+1	reviewed	p.D987N	0.997	99	0%	68	30.9%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	PatternScan_CHITINASE_18,HMMPfam_Ion_trans
TRPM2	7226	genome.wustl.edu	37	21	45833853	45833853	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003307.3	+1	reviewed	p.T1014	0.000	227	0%	128	42.2%	-	-	-	-	-	HMMPfam_Ion_trans
TRPM2	7226	genome.wustl.edu	37	21	45837984	45837984	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003307.3	+1	reviewed	p.K1107	1.000	50	0%	35	34.3%	-	-	-	-	-	NULL
TSPEAR	54084	genome.wustl.edu	37	21	45987716	45987716	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144991.2	-1	provisional	p.E86*	1.000	80	0%	51	43.1%	-	-	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
KRTAP10-7	386675	genome.wustl.edu	37	21	46021506	46021506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380102	+1	known	p.P329S	0.971	224	0%	191	33%	-	-	unknown(0)	tolerated(0.63)	-	HMMPfam_Keratin_B2
ITGB2	3689	genome.wustl.edu	37	21	46321626	46321626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000211.3	-1	reviewed	p.K174N	1.000	132	0%	76	32.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300
C21orf67	84536	genome.wustl.edu	37	21	46355544	46355544	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397841	-1	known	p.L113	0.012	93	0%	64	32.8%	-	-	-	-	-	NULL
COL18A1	80781	genome.wustl.edu	37	21	46916434	46916434	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130444.2	+1	reviewed	p.G1258	0.207	28	0%	19	26.3%	-	-	-	-	-	superfamily_C-type lectin-like
COL18A1	80781	genome.wustl.edu	37	21	46925297	46925298	+	In_Frame_Ins	INS	-	-	CCCCCTGGG	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130444.2	+1	reviewed	p.1429in_frame_insPGP	0.947:0.997	-	-	-	-	-	-	-	-	-	NULL
SLC19A1	6573	genome.wustl.edu	37	21	46951450	46951450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194255.1	-1	validated	p.R268C	0.999	13	0%	17	41.2%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
PCBP3	54039	genome.wustl.edu	37	21	47329274	47329274	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020528.2	+1	reviewed	p.I115	1.000	83	0%	46	26.1%	-	-	-	-	-	NULL
PCBP3	54039	genome.wustl.edu	37	21	47355184	47355184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020528.2	+1	reviewed	p.P292A	1.000	118	0%	89	10.1%	-	-	benign(0.013)	tolerated(0.8)	neutral(0.001)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
LOC100288508	100288508	genome.wustl.edu	37	21	47538677	47538677	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343757.1	-1	model	p.E396*	0.000	25	0%	25	40%	-	-	-	-	-	NULL
LOC100288508	100288508	genome.wustl.edu	37	21	47546000	47546000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343757.1	-1	model	p.D257N	0.998	37	0%	25	44%	-	-	-	-	-	NULL
YBEY	54059	genome.wustl.edu	37	21	47706982	47706982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058181.1	+1	validated	p.R52I	0.000	192	0%	80	31.2%	-	-	benign(0.142)	deleterious(0.04)	neutral(0.361)	"HMMPfam_UPF0054,superfamily_Metalloproteases (""zincins"") catalytic domain"
PCNT	5116	genome.wustl.edu	37	21	47836109	47836109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.D2093N	0.000	145	0%	139	33.1%	-	-	possibly_damaging(0.664)	tolerated(1)	neutral(0.235)	NULL
DIP2A	23181	genome.wustl.edu	37	21	47981665	47981665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015151.3	+1	reviewed	p.R1346C	0.996	309	0%	189	41.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PRMT2	3275	genome.wustl.edu	37	21	48083316	48083316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000458387	+1	known	p.A226T	0.580	157	0%	129	39.5%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
POTEH	23784	genome.wustl.edu	37	22	16267084	16267084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136213.1	-1	provisional	p.E455D	0.035	2400	0%	1389	12%	-	-	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
POTEH	23784	genome.wustl.edu	37	22	16287790	16287790	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136213.1	-1	provisional	p.F32	0.002	502	0%	313	23%	-	-	-	-	-	NULL
OR11H1	81061	genome.wustl.edu	37	22	16449179	16449179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005239.1	-1	provisional	p.R209I	0.000	850	0.1%	432	28.7%	-	-	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
CCT8L2	150160	genome.wustl.edu	37	22	17072079	17072079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014406.4	-1	validated	p.E454D	0.995	293	0%	158	35.4%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
XKR3	150165	genome.wustl.edu	37	22	17280679	17280679	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175878.3	-1	validated	p.E191*	0.043	220	0%	143	35.7%	-	-	-	-	-	HMMPfam_XK-related
CECR2	27443	genome.wustl.edu	37	22	18028495	18028495	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400573	+1	known	p.F1151C	1.000	259	0%	157	34.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATP6V1E1	529	genome.wustl.edu	37	22	18080958	18080958	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001696.3	-1	reviewed	e7+2	1.000	287	0%	169	34.9%	-	-	-	-	-	-
MICAL3	57553	genome.wustl.edu	37	22	18379532	18379532	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015241.2	-1	provisional	p.G388	0.998	104	0%	75	36%	-	-	-	-	-	superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain
MICAL3	57553	genome.wustl.edu	37	22	18379732	18379732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015241.2	-1	provisional	p.E322K	1.000	57	0%	42	35.7%	-	-	probably_damaging(0.994)	tolerated(0.26)	deleterious(0.486)	superfamily_FAD/NAD(P)-binding domain
PRODH	5625	genome.wustl.edu	37	22	18910682	18910682	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016335.3	-1	reviewed	p.S226	0.000	57	0%	51	41.2%	-	-	-	-	-	superfamily_FAD-linked oxidoreductase
PRODH	5625	genome.wustl.edu	37	22	18918594	18918594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016335.3	-1	reviewed	p.R131W	1.000	93	1.1%	56	35.7%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	superfamily_FAD-linked oxidoreductase
DGCR14	8220	genome.wustl.edu	37	22	19121778	19121778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022719.2	-1	reviewed	p.Q454H	0.994	272	0%	199	37.2%	-	-	possibly_damaging(0.931)	tolerated(0.12)	deleterious(0.638)	NULL
CLTCL1	8218	genome.wustl.edu	37	22	19209480	19209480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007098.3	-1	reviewed	p.R852I	1.000	256	0%	153	29.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Clathrin,HMMSmart_SM00299
CDC45	8318	genome.wustl.edu	37	22	19504345	19504345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003504.3	+1	reviewed	p.F522C	1.000	178	0%	129	34.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CDC45
C22orf29	79680	genome.wustl.edu	37	22	19838958	19838958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024627.5	-1	validated	p.S276Y	0.004	188	0%	47	36.2%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
C22orf29	79680	genome.wustl.edu	37	22	19839751	19839751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024627.5	-1	validated	p.R12C	0.000	24	0%	20	25%	-	-	benign(0.004)	-	-	NULL
COMT	1312	genome.wustl.edu	37	22	19950334	19950334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000754.3	+1	reviewed	p.K95N	0.812	132	0%	75	34.7%	-	-	possibly_damaging(0.871)	tolerated(0.13)	deleterious(0.591)	HMMPfam_Methyltransf_3,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ZNF74	7625	genome.wustl.edu	37	22	20759929	20759929	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357502	+1	known	p.E208*	0.000	52	0%	22	45.5%	-	-	-	-	-	NULL
ZNF74	7625	genome.wustl.edu	37	22	20760489	20760489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003426.2	+1	validated	p.Q389R	0.013	61	0%	73	31.5%	-	-	benign(0.006)	tolerated(0.32)	neutral(0.024)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KLHL22	84861	genome.wustl.edu	37	22	20819167	20819167	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032775.2	-1	validated	p.R364*	1.000	35	0%	35	40%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
PI4KA	5297	genome.wustl.edu	37	22	21098930	21098930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058004.2	-1	reviewed	p.R1090C	1.000	179	0%	119	42.9%	-	-	benign(0.392)	tolerated(0.07)	neutral(0.445)	NULL
SERPIND1	3053	genome.wustl.edu	37	22	21133880	21133880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000185.3	+1	reviewed	p.D94N	0.989	107	0%	76	38.2%	-	-	possibly_damaging(0.551)	tolerated(0.38)	neutral(0.205)	superfamily_Serpins,PatternScan_TONB_DEPENDENT_REC_1
PI4KA	5297	genome.wustl.edu	37	22	21174038	21174038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058004.2	-1	reviewed	p.R169Q	0.997	272	0%	123	19.5%	-	-	benign(0.012)	tolerated(0.26)	neutral(0.035)	NULL
CRKL	1399	genome.wustl.edu	37	22	21304053	21304053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005207.3	+1	reviewed	p.E278K	1.000	148	0%	93	29%	-	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
P2RX6	9127	genome.wustl.edu	37	22	21370278	21370278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005446.3	+1	reviewed	p.P71L	1.000	151	0%	63	36.5%	-	-	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_P2X_receptor
PPIL2	23759	genome.wustl.edu	37	22	22041947	22041947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148176.2	+1	reviewed	p.E305K	1.000	211	0%	98	29.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
TOP3B	8940	genome.wustl.edu	37	22	22312958	22312958	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457270	-1	known	p.S466L	0.731	225	0%	141	29.1%	-	-	-	-	-	NULL
IGLV4-60	28785	genome.wustl.edu	37	22	22517066	22517066	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390284	+1	known	p.S118	0.000	135	0%	81	32.1%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV9-49	28773	genome.wustl.edu	37	22	22698012	22698012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427632	+1	known	p.K100N	0.000	260	0%	123	31.7%	-	-	benign(0.016)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV1-47	28822	genome.wustl.edu	37	22	22712442	22712442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390294	+1	known	p.T62M	0.002	319	0%	144	24.3%	-	-	benign(0.016)	deleterious(0.05)	neutral(0.346)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV1-44	28823	genome.wustl.edu	37	22	22735507	22735507	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390297	+1	known	p.I48	0.001	279	0%	166	31.9%	-	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF280A	129025	genome.wustl.edu	37	22	22868785	22868785	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080740.3	-1	reviewed	p.G390	0.055	369	0%	171	37.4%	-	-	-	-	-	NULL
ZNF280A	129025	genome.wustl.edu	37	22	22869781	22869781	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080740.3	-1	reviewed	p.V58	0.007	500	0%	295	36.6%	-	-	-	-	-	NULL
PRAME	23532	genome.wustl.edu	37	22	22890515	22890515	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006115.3	-1	reviewed	p.L502	0.125	132	0%	72	37.5%	-	-	-	-	-	NULL
IGLV3-22	28795	genome.wustl.edu	37	22	23047198	23047198	+	Missense_Mutation	SNP	G	G	A	rs149986188	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390307	+1	known	p.R79Q	0.265	115	0%	80	40%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BCR	613	genome.wustl.edu	37	22	23615945	23615945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004327.3	+1	reviewed	p.T700M	0.999	146	0%	86	39.5%	-	-	benign(0.317)	tolerated(0.12)	neutral(0.360)	superfamily_PH domain-like
BCR	613	genome.wustl.edu	37	22	23656784	23656784	+	Silent	SNP	C	C	T	rs56044087		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004327.3	+1	reviewed	p.L1203	0.065	233	0%	157	16.6%	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
GSTT1	2952	genome.wustl.edu	37	22	24376476	24376476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000853.2	-1	reviewed	p.D224N	0.949	64	0%	64	18.8%	-	-	benign(0.042)	tolerated(0.12)	neutral(0.263)	superfamily_GST_C_like
CABIN1	23523	genome.wustl.edu	37	22	24567727	24567727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012295.2	+1	reviewed	p.R1935Q	1.000	218	0%	100	38%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SPECC1L	23384	genome.wustl.edu	37	22	24717542	24717542	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145468.1	+1	validated	p.E198D	0.965	74	0%	64	45.3%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ADORA2A	135	genome.wustl.edu	37	22	24829582	24829582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000675.4	+1	reviewed	p.F70L	1.000	87	0%	88	34.1%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SNRPD3	6634	genome.wustl.edu	37	22	24953654	24953654	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004175.3	+1	reviewed	p.G4	0.984	354	0%	237	28.3%	-	-	-	-	-	NULL
ADRBK2	157	genome.wustl.edu	37	22	26063718	26063718	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005160.3	+1	reviewed	p.E152*	1.000	207	0%	87	34.5%	-	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
MYO18B	84700	genome.wustl.edu	37	22	26164252	26164252	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.I123	0.007	97	0%	75	17.3%	-	-	-	-	-	NULL
MYO18B	84700	genome.wustl.edu	37	22	26270322	26270322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.V1341I	0.040	246	0%	154	40.3%	-	-	benign(0.003)	tolerated(0.53)	neutral(0.007)	HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO18B	84700	genome.wustl.edu	37	22	26287328	26287328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.A1498S	1.000	310	0%	118	44.9%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26304312	26304312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.E1724D	1.000	114	0%	71	42.3%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26688767	26688767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021115.4	+1	validated	p.P164S	0.023	52	0%	35	28.6%	-	-	possibly_damaging(0.485)	tolerated(0.1)	neutral(0.448)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26688897	26688897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021115.4	+1	validated	p.S207L	0.136	44	0%	27	22.2%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26707828	26707828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021115.4	+1	validated	p.F592L	1.000	127	0%	67	46.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
HPS4	89781	genome.wustl.edu	37	22	26862045	26862045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398141	-1	known	p.K239N	0.002	25	0%	19	42.1%	-	-	benign(0.024)	tolerated(0.52)	neutral(0.010)	NULL
TFIP11	24144	genome.wustl.edu	37	22	26902379	26902379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008697.1	-1	validated	p.K137T	1.000	265	0%	148	33.1%	-	-	benign(0.005)	tolerated(0.07)	neutral(0.319)	NULL
CRYBA4	1413	genome.wustl.edu	37	22	27024290	27024290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001886.2	+1	reviewed	p.E113D	1.000	171	0%	108	38%	-	-	benign(0.021)	tolerated(0.36)	neutral(0.021)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
TTC28	23331	genome.wustl.edu	37	22	28394928	28394928	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145418.1	-1	validated	p.F1573	0.604	82	1.2%	60	33.3%	-	-	-	-	-	NULL
TTC28	23331	genome.wustl.edu	37	22	28501654	28501654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145418.1	-1	validated	p.E974K	1.000	197	0%	130	31.5%	-	-	probably_damaging(0.974)	tolerated(0.13)	deleterious(0.668)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
CHEK2	11200	genome.wustl.edu	37	22	29095873	29095873	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005735.1	-1	reviewed	p.E364*	1.000	391	0%	216	19.4%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HSCB	150274	genome.wustl.edu	37	22	29140631	29140631	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450178	+1	known	p.R103*	0.939	243	0%	139	38.1%	-	-	-	-	-	NULL
XBP1	7494	genome.wustl.edu	37	22	29193155	29193155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079539.1	-1	reviewed	p.E121D	1.000	340	0%	185	34.1%	-	-	probably_damaging(0.994)	tolerated(0.28)	deleterious(0.484)	HMMSmart_BRLZ,HMMPfam_bZIP_2
XBP1	7494	genome.wustl.edu	37	22	29193194	29193194	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079539.1	-1	reviewed	e3-1	1.000	252	0%	131	41.2%	-	-	-	-	-	-
KREMEN1	83999	genome.wustl.edu	37	22	29521332	29521332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032045.4	+1	reviewed	p.E187K	1.000	196	0%	133	33.8%	-	-	possibly_damaging(0.837)	deleterious(0.05)	deleterious(0.665)	HMMPfam_WSC
RFPL1	5988	genome.wustl.edu	37	22	29835058	29835058	+	Missense_Mutation	SNP	G	G	A	rs112326135		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021026.2	+1	validated	p.S93N	0.037	529	0.4%	300	39%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	superfamily_SSF57850
THOC5	8563	genome.wustl.edu	37	22	29932702	29932702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002877.1	-1	validated	p.L209I	0.997	331	0%	186	28%	-	-	benign(0.427)	tolerated(0.1)	neutral(0.425)	HMMPfam_FimP
NF2	4771	genome.wustl.edu	37	22	30054183	30054183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000268.3	+1	reviewed	p.E202A	1.000	329	0%	197	42.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
HORMAD2	150280	genome.wustl.edu	37	22	30494874	30494874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152510.2	+1	provisional	p.H29Y	0.153	283	0%	136	36%	-	-	possibly_damaging(0.485)	tolerated(0.82)	neutral(0.162)	HMMPfam_HORMA,superfamily_HORMA_DNA_bd
OSM	5008	genome.wustl.edu	37	22	30661072	30661072	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020530.3	-1	reviewed	p.S32	0.008	83	0%	59	11.9%	-	-	-	-	-	HMMPfam_LIF_OSM,HMMSmart_LIF_OSM,superfamily_4_helix_cytokine
GAL3ST1	9514	genome.wustl.edu	37	22	30951427	30951427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004861.1	-1	reviewed	p.L262P	1.000	33	0%	37	27%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gal-3-0_sulfotr
GAL3ST1	9514	genome.wustl.edu	37	22	30953362	30953362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004861.1	-1	reviewed	p.K6N	1.000	127	0%	73	35.6%	-	-	benign(0.075)	deleterious(0)	neutral(0.450)	HMMPfam_Gal-3-0_sulfotr
PES1	23481	genome.wustl.edu	37	22	30973083	30973083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014303.2	-1	reviewed	p.D573N	1.000	67	0%	31	29%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
OSBP2	23762	genome.wustl.edu	37	22	31091370	31091370	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030758.3	+1	reviewed	p.A158	0.033	51	0%	33	27.3%	-	-	-	-	-	NULL
SMTN	6525	genome.wustl.edu	37	22	31487398	31487398	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134270.1	+1	reviewed	p.I463	1.000	12	0%	12	58.3%	-	-	-	-	-	NULL
INPP5J	27124	genome.wustl.edu	37	22	31529185	31529185	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002837.1	+1	validated	p.F397	0.988	172	0%	136	36%	-	-	-	-	-	NULL
INPP5J	27124	genome.wustl.edu	37	22	31529643	31529643	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002837.1	+1	validated	p.I451	0.999	226	0%	175	33.7%	-	-	-	-	-	NULL
PLA2G3	50487	genome.wustl.edu	37	22	31533797	31533797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015715.3	-1	validated	p.S322I	0.000	256	0%	132	37.1%	-	-	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	NULL
PLA2G3	50487	genome.wustl.edu	37	22	31534698	31534698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015715.3	-1	validated	p.R201Q	1.000	630	0%	409	38.6%	-	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Phospholip_A2_2,superfamily_Phospholipase A2 PLA2
LIMK2	3985	genome.wustl.edu	37	22	31663018	31663018	+	Nonsense_Mutation	SNP	C	C	T	rs114127458	byCluster;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031801.1	+1	reviewed	p.R343*	1.000	320	0%	153	37.3%	-	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
PIK3IP1	113791	genome.wustl.edu	37	22	31685650	31685650	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052880.4	-1	validated	p.E115*	0.052	69	0%	35	34.3%	-	-	-	-	-	superfamily_Kringle-like
PIK3IP1	113791	genome.wustl.edu	37	22	31685662	31685662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052880.4	-1	validated	p.A111T	0.000	64	0%	35	14.3%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_Kringle-like
SFI1	9814	genome.wustl.edu	37	22	31985511	31985511	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007467.1	+1	validated	p.R498*	0.088	86	0%	82	23.2%	-	-	-	-	-	NULL
PRR14L	253143	genome.wustl.edu	37	22	32108310	32108310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173566.2	-1	validated	p.R1839W	1.000	218	0.9%	155	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRR14L	253143	genome.wustl.edu	37	22	32110409	32110409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173566.2	-1	validated	p.S1139Y	0.000	125	0%	71	39.4%	-	-	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
PRR14L	253143	genome.wustl.edu	37	22	32113035	32113035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173566.2	-1	validated	p.E264K	1.000	553	0%	356	32.6%	-	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32289670	32289670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014662.2	+1	validated	p.S1348Y	1.000	148	0%	123	37.4%	-	-	possibly_damaging(0.527)	tolerated(0.9)	neutral(0.178)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32302399	32302399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014662.2	+1	validated	p.F1545L	1.000	53	0%	38	39.5%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
C22orf24	25775	genome.wustl.edu	37	22	32330338	32330338	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015372.1	-1	predicted	p.L83	0.003	512	0%	245	34.7%	-	-	-	-	-	NULL
SLC5A1	6523	genome.wustl.edu	37	22	32445936	32445936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000343.3	+1	reviewed	p.F48L	0.999	563	0%	310	13.9%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
C22orf42	150297	genome.wustl.edu	37	22	32547515	32547515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010859.1	-1	provisional	p.S142P	0.000	199	0%	112	39.3%	-	-	benign(0.418)	-	-	NULL
SLC5A4	6527	genome.wustl.edu	37	22	32614660	32614660	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014227.2	-1	validated	p.C607	0.948	104	0%	70	34.3%	-	-	-	-	-	NULL
RFPL3	10738	genome.wustl.edu	37	22	32756529	32756529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098535.1	+1	validated	p.D222N	0.000	354	0%	232	34.1%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_SPRY,HMMSmart_SPRY
FBXO7	25793	genome.wustl.edu	37	22	32887163	32887163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012179.3	+1	reviewed	p.R321Q	1.000	226	0.4%	132	34.8%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
SYN3	8224	genome.wustl.edu	37	22	32923929	32923929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003490.3	-1	reviewed	p.P432S	1.000	84	0%	77	41.6%	-	-	probably_damaging(0.988)	tolerated(0.68)	neutral(0.440)	NULL
TIMP3	7078	genome.wustl.edu	37	22	33253284	33253284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000362.4	+1	reviewed	p.E85K	0.997	189	0%	92	39.1%	-	-	probably_damaging(0.987)	deleterious(0.05)	deleterious(0.782)	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like
LARGE	9215	genome.wustl.edu	37	22	33670548	33670548	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004737.4	-1	reviewed	p.F712	1.000	391	0%	177	31.6%	-	-	-	-	-	NULL
ISX	91464	genome.wustl.edu	37	22	35480377	35480377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008494.1	+1	validated	p.I128S	1.000	129	0%	82	37.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
TOM1	10043	genome.wustl.edu	37	22	35717988	35717988	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135732.1	+1	reviewed	p.I58	0.001	187	0%	109	33%	-	-	-	-	-	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS
MCM5	4174	genome.wustl.edu	37	22	35817356	35817356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006739.3	+1	reviewed	p.M626I	1.000	72	0%	47	29.8%	-	-	benign(0.302)	tolerated(0.13)	neutral(0.346)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC284912	284912	genome.wustl.edu	37	22	36031138	36031138	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041187.2	-1	model	NULL	0.037	88	0%	57	17.5%	-	-	-	-	-	-
MYH9	4627	genome.wustl.edu	37	22	36688172	36688172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002473.4	-1	reviewed	p.E1402K	1.000	104	0%	87	17.2%	-	-	benign(0.019)	tolerated(0.12)	neutral(0.262)	HMMPfam_Myosin_tail_1
CACNG2	10369	genome.wustl.edu	37	22	36960824	36960824	+	Silent	SNP	G	G	A	rs113130432	byFrequency	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006078.2	-1	reviewed	p.F182	1.000	93	0%	86	36%	-	-	-	-	-	HMMPfam_PMP22_Claudin
CACNG2	10369	genome.wustl.edu	37	22	36983581	36983581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006078.2	-1	reviewed	p.L76M	0.998	245	0%	167	32.9%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_PMP22_Claudin
NCF4	4689	genome.wustl.edu	37	22	37261016	37261016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013416.3	+1	validated	p.R58H	1.000	77	0%	44	22.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
NCF4	4689	genome.wustl.edu	37	22	37263465	37263465	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013416.3	+1	validated	p.I101	0.864	122	0%	72	31.9%	-	-	-	-	-	HMMPfam_PX,HMMSmart_PX,superfamily_PX
CSF2RB	1439	genome.wustl.edu	37	22	37326859	37326859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000395.2	+1	reviewed	p.K333N	0.746	62	0%	56	37.5%	-	-	probably_damaging(0.956)	tolerated(0.19)	neutral(0.449)	NULL
TMPRSS6	164656	genome.wustl.edu	37	22	37466963	37466963	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153609.2	-1	reviewed	p.E564	0.998	29	0%	18	27.8%	-	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
TMPRSS6	164656	genome.wustl.edu	37	22	37492724	37492724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153609.2	-1	reviewed	p.G132V	0.829	252	0%	117	47%	-	-	possibly_damaging(0.606)	deleterious(0.02)	deleterious(0.593)	superfamily_SEA domain
SSTR3	6753	genome.wustl.edu	37	22	37603623	37603623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001051.2	-1	reviewed	p.A74T	1.000	62	0%	56	14.3%	-	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_SSF81321
ELFN2	114794	genome.wustl.edu	37	22	37770002	37770002	+	Missense_Mutation	SNP	C	C	T	rs56845582		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052906.3	-1	validated	p.E525K	1.000	42	0%	27	29.6%	-	-	benign(0.03)	tolerated(0.14)	neutral(0.251)	NULL
ELFN2	114794	genome.wustl.edu	37	22	37771359	37771359	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052906.3	-1	validated	p.Y72*	1.000	562	0%	313	39.6%	-	-	-	-	-	superfamily_SSF52058
MIR659	724029	genome.wustl.edu	37	22	38243770	38243770	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384963	-1	known	NULL	0.000	108	0%	62	40.3%	-	-	-	-	-	-
EIF3L	51386	genome.wustl.edu	37	22	38266205	38266205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016091.2	+1	validated	p.R201H	1.000	465	0.2%	283	27.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Paf67
C22orf23	84645	genome.wustl.edu	37	22	38343373	38343373	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032561.2	-1	predicted	p.L88	0.039	328	0%	183	35%	-	-	-	-	-	HMMPfam_UPF0193
KCNJ4	3761	genome.wustl.edu	37	22	38823557	38823557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004981.1	-1	reviewed	p.S194L	1.000	46	0%	43	37.2%	-	-	possibly_damaging(0.795)	deleterious(0.02)	deleterious(0.681)	HMMPfam_IRK,superfamily_Ig_E-set
GTPBP1	9567	genome.wustl.edu	37	22	39117783	39117783	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004286.4	+1	reviewed	p.E291*	1.000	213	0%	151	41.7%	-	-	-	-	-	HMMPfam_GTP_EFTU,superfamily_SSF52540
SUN2	25777	genome.wustl.edu	37	22	39146954	39146954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015374.1	-1	validated	p.E125K	0.874	49	0%	35	42.9%	-	-	possibly_damaging(0.856)	tolerated(0.27)	neutral(0.364)	NULL
SUN2	25777	genome.wustl.edu	37	22	39148627	39148627	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015374.1	-1	validated	p.R3*	0.984	61	0%	65	32.3%	-	-	-	-	-	NULL
APOBEC3D	140564	genome.wustl.edu	37	22	39421321	39421321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152426.3	+1	reviewed	p.A153T	0.000	225	0%	135	42.2%	-	-	probably_damaging(0.99)	tolerated(0.51)	neutral(0.451)	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
APOBEC3D	140564	genome.wustl.edu	37	22	39421596	39421596	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152426.3	+1	reviewed	p.N175	0.000	411	0%	295	38.6%	-	-	-	-	-	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
APOBEC3F	200316	genome.wustl.edu	37	22	39445579	39445579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145298.5	+1	validated	p.R239Q	0.006	196	0.5%	108	39.8%	-	-	probably_damaging(0.997)	tolerated(0.34)	deleterious(0.489)	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like
APOBEC3G	60489	genome.wustl.edu	37	22	39476947	39476947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021822.2	+1	reviewed	p.E61K	0.000	94	0%	65	16.9%	-	-	benign(0)	tolerated(1)	-	HMMPfam_APOBEC_N
TAB1	10454	genome.wustl.edu	37	22	39811625	39811625	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000480990	+1	known	p.T25M	0.728	52	0%	42	35.7%	-	-	-	-	-	NULL
SMCR7L	54471	genome.wustl.edu	37	22	39908303	39908303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019008.4	+1	validated	p.R130L	1.000	47	0%	44	25%	-	-	probably_damaging(0.996)	tolerated(0.32)	deleterious(0.486)	NULL
SMCR7L	54471	genome.wustl.edu	37	22	39908325	39908325	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428069	+1	known	p.E109*	1.000	47	0%	44	34.1%	-	-	-	-	-	NULL
GRAP2	9402	genome.wustl.edu	37	22	40362132	40362132	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004810.2	+1	reviewed	p.I143	1.000	166	0%	102	34.3%	-	-	-	-	-	superfamily_SH2 domain
SGSM3	27352	genome.wustl.edu	37	22	40805011	40805011	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417424	+1	known	p.R42C	0.988	97	0%	49	24.5%	-	-	-	-	-	HMMPfam_RUN
MKL1	57591	genome.wustl.edu	37	22	40807435	40807435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020831.3	-1	validated	p.D919N	1.000	113	0%	68	29.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MKL1	57591	genome.wustl.edu	37	22	40815229	40815229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020831.3	-1	validated	p.E405K	1.000	39	0%	53	37.7%	-	-	probably_damaging(0.959)	tolerated(0.11)	deleterious(0.674)	NULL
MKL1	57591	genome.wustl.edu	37	22	40827457	40827457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020831.3	-1	validated	p.R31S	1.000	278	0%	179	32.4%	-	-	benign(0.31)	deleterious(0)	deleterious(0.541)	HMMSmart_RPEL
MCHR1	2847	genome.wustl.edu	37	22	41077105	41077105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005297.3	+1	reviewed	p.D148N	1.000	232	0%	181	37.6%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ST13	6767	genome.wustl.edu	37	22	41226870	41226870	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003932.3	-1	reviewed	p.R258*	1.000	288	0%	163	42.3%	-	-	-	-	-	NULL
DNAJB7	150353	genome.wustl.edu	37	22	41257666	41257666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145174.1	-1	provisional	p.F111L	1.000	206	0%	115	32.2%	-	-	benign(0.034)	tolerated(0.18)	neutral(0.058)	superfamily_DnaJ_N
L3MBTL2	83746	genome.wustl.edu	37	22	41625550	41625550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031488.4	+1	validated	p.R632I	1.000	146	0%	105	28.6%	-	-	possibly_damaging(0.462)	deleterious(0.01)	deleterious(0.557)	NULL
CHADL	150356	genome.wustl.edu	37	22	41632540	41632540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138481.1	-1	validated	p.D671N	0.996	64	0%	36	44.4%	-	-	benign(0.055)	tolerated(0.28)	neutral(0.035)	superfamily_L domain-like
RANGAP1	5905	genome.wustl.edu	37	22	41650450	41650450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002883.2	-1	reviewed	p.E374D	0.000	132	0%	99	12.1%	-	-	benign(0.002)	tolerated(0.78)	neutral(0.001)	NULL
MEI1	150365	genome.wustl.edu	37	22	42119966	42119966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152513.3	+1	validated	p.L251F	1.000	570	0.2%	301	40.2%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_ARM repeat
CCDC134	79879	genome.wustl.edu	37	22	42209814	42209814	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024821.2	+1	validated	p.I184	0.319	154	0%	62	22.6%	-	-	-	-	-	NULL
SEPT3	55964	genome.wustl.edu	37	22	42383641	42383641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145733.2	+1	reviewed	p.E143D	1.000	152	0%	100	29%	-	-	benign(0.003)	deleterious(0)	neutral(0.445)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM109B	150368	genome.wustl.edu	37	22	42473765	42473765	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002034.2	+1	validated	p.R156	0.000	60	0%	37	45.9%	-	-	-	-	-	NULL
CYP2D7P1	1564	genome.wustl.edu	37	22	42537682	42537682	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002570.2	-1	validated	NULL	0.926	66	0%	33	39.4%	-	-	unknown(0)	-	-	-
TCF20	6942	genome.wustl.edu	37	22	42608518	42608518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005650.1	-1	reviewed	p.D932Y	1.000	110	0%	67	40.3%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
RRP7A	27341	genome.wustl.edu	37	22	42908976	42908976	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015703.4	-1	validated	p.F261	0.995	49	0%	30	26.7%	-	-	-	-	-	NULL
CYB5R3	1727	genome.wustl.edu	37	22	43019850	43019850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000398.6	-1	reviewed	p.R226S	1.000	160	0%	113	33.6%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
ARFGAP3	26286	genome.wustl.edu	37	22	43195060	43195060	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014570.4	-1	reviewed	p.V506	0.993	205	0%	128	41.4%	-	-	-	-	-	NULL
TTLL12	23170	genome.wustl.edu	37	22	43568480	43568480	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015140.3	-1	validated	p.I474	0.044	243	0%	125	40%	-	-	-	-	-	HMMPfam_TTL
SCUBE1	80274	genome.wustl.edu	37	22	43716024	43716024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173050.2	-1	validated	p.E90K	1.000	268	0%	202	46.5%	-	-	possibly_damaging(0.922)	tolerated(0.71)	neutral(0.373)	HMMSmart_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
MPPED1	758	genome.wustl.edu	37	22	43894153	43894153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044370.1	+1	validated	p.R224Q	1.000	46	0%	42	40.5%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
EFCAB6	64800	genome.wustl.edu	37	22	44031028	44031028	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022785.2	-1	validated	p.F684	0.000	404	0.2%	258	38.8%	-	-	-	-	-	superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	44107407	44107407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022785.2	-1	validated	p.D327N	0.961	179	0%	104	16.3%	-	-	probably_damaging(1)	tolerated(0.62)	deleterious(0.504)	HMMSmart_SM00054,superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	44107408	44107408	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022785.2	-1	validated	p.L326	0.002	181	0%	104	14.4%	-	-	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
PNPLA3	80339	genome.wustl.edu	37	22	44330542	44330542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025225.2	+1	reviewed	p.E251D	0.250	863	0%	396	35.6%	-	-	probably_damaging(0.955)	tolerated(0.1)	deleterious(0.685)	NULL
PARVB	29780	genome.wustl.edu	37	22	44543754	44543754	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003828.1	+1	validated	p.F275	0.997	183	0%	107	45.8%	-	-	-	-	-	superfamily_Calponin-homology
SMC1B	27127	genome.wustl.edu	37	22	45748465	45748465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148674.3	-1	validated	p.E1097D	1.000	199	0%	115	35.7%	-	-	benign(0.417)	tolerated(0.65)	neutral(0.138)	HMMPfam_SMC_N,superfamily_SSF52540
SMC1B	27127	genome.wustl.edu	37	22	45779373	45779373	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148674.3	-1	validated	p.R678*	1.000	760	0%	317	30.9%	-	-	-	-	-	HMMPfam_SMC_N,superfamily_SMC_hinge,superfamily_SSF52540
FBLN1	2192	genome.wustl.edu	37	22	45914568	45914568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006486.2	+1	reviewed	p.A29V	0.024	98	0%	69	27.5%	-	-	unknown(0)	tolerated(0.05)	-	NULL
PKDREJ	10343	genome.wustl.edu	37	22	46653952	46653952	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006071.1	-1	reviewed	p.K1756	0.001	151	0%	87	36.8%	-	-	-	-	-	HMMPfam_PKD_channel
PKDREJ	10343	genome.wustl.edu	37	22	46655859	46655859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006071.1	-1	reviewed	p.L1121I	0.012	329	0%	215	38.1%	-	-	possibly_damaging(0.799)	tolerated(0.28)	neutral(0.333)	HMMSmart_SM00303
PKDREJ	10343	genome.wustl.edu	37	22	46656810	46656810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006071.1	-1	reviewed	p.E804*	0.995	194	0%	114	32.5%	-	-	-	-	-	NULL
TTC38	55020	genome.wustl.edu	37	22	46681152	46681152	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017931.2	+1	validated	p.A270	0.038	364	0%	185	38.9%	-	-	-	-	-	superfamily_SSF48452
GTSE1	51512	genome.wustl.edu	37	22	46704101	46704101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016426.6	+1	reviewed	p.S45*	0.823	367	0%	252	38.5%	-	-	-	-	-	NULL
TRMU	55687	genome.wustl.edu	37	22	46751422	46751422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018006.4	+1	reviewed	p.A319T	0.021	32	0%	27	29.6%	-	-	possibly_damaging(0.712)	tolerated(0.56)	neutral(0.264)	HMMPfam_tRNA_Me_trans
CELSR1	9620	genome.wustl.edu	37	22	46765589	46765589	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014246.1	-1	reviewed	p.I2624	0.035	106	0%	57	40.4%	-	-	-	-	-	HMMPfam_7tm_2
CERK	64781	genome.wustl.edu	37	22	47116085	47116085	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022766.5	-1	validated	p.R93*	0.011	85	0%	92	51.1%	-	-	-	-	-	HMMSmart_PH
TBC1D22A	25771	genome.wustl.edu	37	22	47193454	47193454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014346.1	+1	provisional	p.E192K	0.961	37	0%	21	33.3%	-	-	benign(0)	tolerated(0.48)	neutral(0.011)	superfamily_Ypt/Rab-GAP domain of gyp1p
ALG12	79087	genome.wustl.edu	37	22	50297444	50297444	+	Missense_Mutation	SNP	C	C	T	rs143461758	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000332276	-1	known	p.A148T	0.000	46	0%	30	23.3%	-	-	unknown(0)	-	-	NULL
IL17REL	400935	genome.wustl.edu	37	22	50436132	50436132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001694.2	-1	validated	p.E287K	0.000	198	0%	112	37.5%	-	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50598210	50598210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018995.2	+1	reviewed	p.S1107L	0.999	272	0%	124	27.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TUBGCP6	85378	genome.wustl.edu	37	22	50659099	50659099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020461.3	-1	reviewed	p.S1230L	0.034	78	0%	47	12.8%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Spc97_Spc98
TUBGCP6	85378	genome.wustl.edu	37	22	50660915	50660915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020461.3	-1	reviewed	p.R793C	0.102	77	0%	54	38.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spc97_Spc98
LMF2	91289	genome.wustl.edu	37	22	50944126	50944126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033200.2	-1	validated	p.G273D	0.002	41	0%	41	29.3%	-	-	benign(0.086)	tolerated(0.64)	neutral(0.009)	HMMPfam_DUF1222
LMF2	91289	genome.wustl.edu	37	22	50944590	50944590	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000487499	-1	known	p.R223C	0.619	26	0%	23	21.7%	-	-	-	-	-	HMMPfam_DUF1222
NCAPH2	29781	genome.wustl.edu	37	22	50960827	50960827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152299.3	+1	reviewed	p.E430G	0.886	46	0%	38	42.1%	-	-	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	HMMPfam_DUF1032
CPT1B	1375	genome.wustl.edu	37	22	51008047	51008047	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145135.1	-1	reviewed	p.T731	0.967	185	0%	127	37.8%	-	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CHKB	1120	genome.wustl.edu	37	22	51018176	51018176	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005198.4	-1	reviewed	p.D337E	0.350	331	0%	218	35.8%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	superfamily_Protein kinase-like (PK-like)
ACR	49	genome.wustl.edu	37	22	51183233	51183233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097.2	+1	reviewed	p.K288N	0.994	202	0%	127	39.4%	-	-	benign(0.292)	deleterious(0.02)	deleterious(0.473)	superfamily_Pept_Ser_Cys
ACR	49	genome.wustl.edu	37	22	51183292	51183292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097.2	+1	reviewed	p.R308Q	0.000	195	0%	123	42.3%	-	-	benign(0.012)	tolerated(0.49)	neutral(0.011)	NULL
PLCXD1	55344	genome.wustl.edu	37	X	215973	215973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018390.3	+1	reviewed	p.A315T	0.199	142	0%	110	40.9%	-	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	superfamily_PLC-like_Pdiesterase_TIM-brl
GTPBP6	8225	genome.wustl.edu	37	X	224035	224035	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400701	-1	known	p.A244T	0.001	58	0%	51	11.8%	-	-	-	-	-	NULL
GTPBP6	8225	genome.wustl.edu	37	X	228284	228284	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400701	-1	known	p.A80T	0.874	146	0%	148	34.5%	-	-	-	-	-	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP2R3B	28227	genome.wustl.edu	37	X	306357	306357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013239.4	-1	reviewed	p.F310L	1.000	257	0%	191	33%	-	-	benign(0.409)	deleterious(0)	deleterious(0.577)	superfamily_EF-hand
SHOX	6473	genome.wustl.edu	37	X	591654	591654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000451.3	+1	reviewed	p.V8L	1.000	322	0.3%	130	33.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CSF2RA	1438	genome.wustl.edu	37	X	1409267	1409267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006140.4	+1	reviewed	p.D171Y	0.002	568	0%	282	31.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Fibronectin type III
SLC25A6	293	genome.wustl.edu	37	X	1506218	1506218	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001636.3	-1	reviewed	p.F231	0.991	97	0%	71	33.8%	-	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A6	293	genome.wustl.edu	37	X	1508156	1508156	+	Silent	SNP	G	G	A	rs191387595	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001636.3	-1	reviewed	p.F192	1.000	118	0%	88	33%	-	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
P2RY8	286530	genome.wustl.edu	37	X	1584490	1584490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178129.4	-1	reviewed	p.R321H	0.002	74	0%	58	39.7%	-	-	benign(0.011)	tolerated(0.31)	neutral(0.028)	superfamily_SSF81321
AKAP17A	8227	genome.wustl.edu	37	X	1712613	1712613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005088.2	+1	validated	p.K86N	0.985	165	0%	110	28.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP17A	8227	genome.wustl.edu	37	X	1712872	1712872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005088.2	+1	validated	p.V173I	0.926	137	0%	82	48.8%	-	-	possibly_damaging(0.749)	tolerated(1)	neutral(0.275)	NULL
ZBED1	9189	genome.wustl.edu	37	X	2406915	2406915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004729.3	-1	reviewed	p.V616I	0.993	84	0%	89	31.5%	-	-	possibly_damaging(0.862)	tolerated(0.09)	deleterious(0.629)	HMMPfam_hATC
ZBED1	9189	genome.wustl.edu	37	X	2408667	2408667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004729.3	-1	reviewed	p.D32N	1.000	386	0%	232	35.8%	-	-	probably_damaging(0.982)	tolerated(0.6)	neutral(0.431)	HMMPfam_zf-BED,HMMSmart_ZnF_BED
XG	7499	genome.wustl.edu	37	X	2726245	2726245	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141919.1	+1	reviewed	p.T146	0.009	250	0%	139	32.4%	-	-	-	-	-	NULL
ARSH	347527	genome.wustl.edu	37	X	2947303	2947303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011719.1	+1	validated	p.Q405H	0.066	389	0%	182	42.3%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSH	347527	genome.wustl.edu	37	X	2951169	2951169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011719.1	+1	validated	p.D478N	0.995	207	0%	131	38.2%	-	-	benign(0.021)	tolerated(0.17)	neutral(0.060)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSF	416	genome.wustl.edu	37	X	3030450	3030450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004042.3	+1	reviewed	p.Q542H	0.000	248	0%	137	14.6%	-	-	benign(0.394)	deleterious(0.03)	deleterious(0.491)	superfamily_Alkaline phosphatase-like
MXRA5	25878	genome.wustl.edu	37	X	3235223	3235223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.D2167Y	1.000	28	0%	25	20%	-	-	benign(0.119)	deleterious(0.04)	neutral(0.358)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3242757	3242757	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.T323	0.197	385	0%	220	34.5%	-	-	-	-	-	NULL
NLGN4X	57502	genome.wustl.edu	37	X	5811289	5811289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020742.2	-1	reviewed	p.E674K	0.998	619	0.2%	331	42%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NLGN4X	57502	genome.wustl.edu	37	X	5947436	5947436	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020742.2	-1	reviewed	p.V170	0.788	290	0%	178	26.4%	-	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
VCX	26609	genome.wustl.edu	37	X	7811769	7811769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013452.2	+1	reviewed	p.E111D	0.978	614	0%	383	29.5%	-	-	unknown(0)	tolerated(0.11)	-	NULL
PNPLA4	8228	genome.wustl.edu	37	X	7868791	7868791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142389.1	-1	reviewed	p.S233F	0.001	271	0%	110	22.7%	-	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
WWC3	55841	genome.wustl.edu	37	X	10085535	10085535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.S479L	1.000	15	0%	20	50%	-	-	possibly_damaging(0.454)	tolerated(0.17)	neutral(0.207)	NULL
WWC3	55841	genome.wustl.edu	37	X	10090724	10090724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.L566M	1.000	214	0%	153	37.3%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
MID1	4281	genome.wustl.edu	37	X	10450555	10450555	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000381.2	-1	reviewed	p.A326	0.892	260	0%	159	37.1%	-	-	-	-	-	HMMSmart_SM00502
MID1	4281	genome.wustl.edu	37	X	10534974	10534974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000381.2	-1	reviewed	p.R205H	1.000	224	0%	126	33.3%	-	-	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain
AMELX	265	genome.wustl.edu	37	X	11316692	11316692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182680.1	+1	reviewed	p.M71V	1.000	235	0%	140	32.9%	-	-	benign(0.007)	tolerated(0.25)	neutral(0.037)	HMMPfam_Amelogenin,HMMSmart_SM00818
FRMPD4	9758	genome.wustl.edu	37	X	12692997	12692997	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014728.3	+1	reviewed	p.S146	1.000	598	0%	363	39.4%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
FRMPD4	9758	genome.wustl.edu	37	X	12722496	12722496	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014728.3	+1	reviewed	p.E363	1.000	294	0%	133	33.8%	-	-	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
TLR7	51284	genome.wustl.edu	37	X	12905209	12905209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016562.3	+1	reviewed	p.L528I	0.311	187	0%	72	31.9%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00369,superfamily_L domain-like
TLR7	51284	genome.wustl.edu	37	X	12906409	12906409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016562.3	+1	reviewed	p.L928I	1.000	149	0%	105	33.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
TLR8	51311	genome.wustl.edu	37	X	12938183	12938183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138636.4	+1	reviewed	p.L342I	0.422	163	0%	91	30.8%	-	-	possibly_damaging(0.67)	tolerated(0.22)	neutral(0.279)	superfamily_SSF52047
ATXN3L	92552	genome.wustl.edu	37	X	13338018	13338018	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135995.1	-1	validated	p.F12	0.549	202	0%	146	47.9%	-	-	-	-	-	HMMPfam_Josephin
RAB9A	9367	genome.wustl.edu	37	X	13727253	13727253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004251.3	+1	provisional	p.E130K	1.000	177	0%	102	44.1%	-	-	benign(0.021)	tolerated(0.58)	neutral(0.006)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
OFD1	8481	genome.wustl.edu	37	X	13780491	13780491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003611.2	+1	reviewed	p.D806N	0.147	242	0%	101	30.7%	-	-	benign(0.106)	deleterious(0.01)	neutral(0.414)	NULL
OFD1	8481	genome.wustl.edu	37	X	13785377	13785377	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003611.2	+1	reviewed	p.E911*	0.862	523	0%	133	26.3%	-	-	-	-	-	NULL
GEMIN8	54960	genome.wustl.edu	37	X	14038255	14038255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042479.1	-1	reviewed	p.E138D	0.993	254	0%	159	35.2%	-	-	probably_damaging(0.955)	tolerated(0.38)	neutral(0.416)	NULL
GLRA2	2742	genome.wustl.edu	37	X	14748516	14748516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001118885.1	+1	reviewed	p.R423Q	1.000	337	0%	174	35.1%	-	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
FANCB	2187	genome.wustl.edu	37	X	14861831	14861831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.R813I	0.357	490	0%	303	36%	-	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
MOSPD2	158747	genome.wustl.edu	37	X	14930383	14930383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152581.3	+1	validated	p.E298K	0.827	230	0%	64	35.9%	-	-	probably_damaging(0.989)	tolerated(0.32)	neutral(0.464)	NULL
ASB11	140456	genome.wustl.edu	37	X	15307642	15307642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080873.1	-1	reviewed	p.K213N	1.000	179	0%	88	36.4%	-	-	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ASB11	140456	genome.wustl.edu	37	X	15320904	15320904	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080873.1	-1	reviewed	p.L69	0.998	193	0%	107	30.8%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ASB11	140456	genome.wustl.edu	37	X	15333608	15333608	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080873.1	-1	reviewed	p.I40	1.000	239	0%	113	40.7%	-	-	-	-	-	superfamily_ANK
PIGA	5277	genome.wustl.edu	37	X	15349658	15349658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002641.2	-1	reviewed	p.S132Y	1.000	365	0%	188	37.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PIGA,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
BMX	660	genome.wustl.edu	37	X	15540684	15540684	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001721.6	+1	reviewed	p.D242	1.000	194	0%	107	11.2%	-	-	-	-	-	NULL
BMX	660	genome.wustl.edu	37	X	15543480	15543480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001721.6	+1	reviewed	p.K274N	1.000	298	0%	105	36.2%	-	-	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	NULL
ACE2	59272	genome.wustl.edu	37	X	15580081	15580081	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021804.2	-1	reviewed	p.G789*	0.078	698	0%	359	38.4%	-	-	-	-	-	NULL
ACE2	59272	genome.wustl.edu	37	X	15589784	15589784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021804.2	-1	reviewed	p.K600N	0.474	423	0%	277	42.6%	-	-	benign(0.29)	tolerated(0.25)	neutral(0.127)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ACE2	59272	genome.wustl.edu	37	X	15599472	15599472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021804.2	-1	reviewed	p.F314L	1.000	228	0.4%	133	41.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
AP1S2	8905	genome.wustl.edu	37	X	15870608	15870608	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003916.3	-1	reviewed	p.R14*	1.000	574	0%	309	40.1%	-	-	-	-	-	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
REPS2	9185	genome.wustl.edu	37	X	17065476	17065476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004726.2	+1	reviewed	p.S260P	1.000	309	0%	149	32.2%	-	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
NHS	4810	genome.wustl.edu	37	X	17744205	17744205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198270.2	+1	reviewed	p.S639Y	1.000	138	0%	88	37.5%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
SCML1	6322	genome.wustl.edu	37	X	17767569	17767569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037540.1	+1	validated	p.R83H	0.000	443	0.2%	198	36.9%	-	-	possibly_damaging(0.646)	tolerated(0.33)	neutral(0.251)	NULL
SCML2	10389	genome.wustl.edu	37	X	18260655	18260655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006089.2	-1	validated	p.K626N	1.000	300	0%	161	38.5%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_SAM/Pointed domain
SCML2	10389	genome.wustl.edu	37	X	18338497	18338497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006089.2	-1	validated	p.K147N	0.731	415	0%	254	36.6%	-	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
CDKL5	6792	genome.wustl.edu	37	X	18622684	18622684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037343.1	+1	reviewed	p.R547I	1.000	525	0%	312	15.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDKL5	6792	genome.wustl.edu	37	X	18643346	18643346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037343.1	+1	reviewed	p.K825N	0.999	192	0%	119	41.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDKL5	6792	genome.wustl.edu	37	X	18671655	18671655	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037343.1	+1	reviewed	p.T1028	0.000	83	1.2%	74	35.1%	-	-	-	-	-	NULL
PHKA2	5256	genome.wustl.edu	37	X	18959751	18959751	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000292.2	-1	reviewed	p.E254*	1.000	297	0%	163	42.9%	-	-	-	-	-	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
GPR64	10149	genome.wustl.edu	37	X	19014235	19014235	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079858.2	-1	validated	p.E884*	1.000	345	0%	177	36.2%	-	-	-	-	-	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Family A G protein-coupled receptor-like
GPR64	10149	genome.wustl.edu	37	X	19021184	19021184	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079858.2	-1	validated	p.A670	0.944	185	0%	77	33.8%	-	-	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
GPR64	10149	genome.wustl.edu	37	X	19025360	19025360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079858.2	-1	validated	p.P561L	0.000	451	0%	313	34.5%	-	-	possibly_damaging(0.736)	deleterious(0.02)	deleterious(0.652)	NULL
SH3KBP1	30011	genome.wustl.edu	37	X	19606857	19606857	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031892.2	-1	reviewed	p.K401T	1.000	623	0%	370	12.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CXorf23	256643	genome.wustl.edu	37	X	19984268	19984268	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198279.3	-1	validated	p.E181*	1.000	497	0%	246	30.5%	-	-	-	-	-	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20034378	20034378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152780.3	-1	validated	p.R452Q	0.046	530	0%	367	36%	-	-	unknown(0)	tolerated(0.11)	-	HMMPfam_MAP7
MAP7D2	256714	genome.wustl.edu	37	X	20060723	20060723	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152780.3	-1	validated	p.R261*	0.001	148	0%	88	34.1%	-	-	-	-	-	NULL
RPS6KA3	6197	genome.wustl.edu	37	X	20194574	20194574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004586.2	-1	reviewed	p.F326S	1.000	151	0%	99	29.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CNKSR2	22866	genome.wustl.edu	37	X	21450785	21450785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014927.3	+1	reviewed	p.S95Y	1.000	160	0%	107	29%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CRIC_ras_sig
CNKSR2	22866	genome.wustl.edu	37	X	21508597	21508597	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014927.3	+1	reviewed	p.V194	0.999	312	0.3%	152	38.8%	-	-	-	-	-	NULL
PHEX	5251	genome.wustl.edu	37	X	22263474	22263474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000444.4	+1	reviewed	p.E699K	1.000	262	0%	123	33.3%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Peptidase_M13,superfamily_SSF55486
DDX53	168400	genome.wustl.edu	37	X	23018344	23018344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182699.2	+1	validated	p.N57S	0.000	256	0%	121	29.8%	-	-	benign(0.01)	tolerated(1)	neutral(0.001)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
DDX53	168400	genome.wustl.edu	37	X	23019771	23019771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182699.2	+1	validated	p.L533F	0.988	260	0%	154	34.4%	-	-	benign(0.017)	deleterious(0)	neutral(0.445)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
LOC653707	653707	genome.wustl.edu	37	X	23216599	23216599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343798.1	+1	model	p.K48N	0.085	500	0.2%	292	34.6%	-	-	-	-	-	NULL
PTCHD1	139411	genome.wustl.edu	37	X	23411151	23411151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173495.2	+1	validated	p.L506I	1.000	197	0%	113	38.9%	-	-	benign(0.115)	tolerated(0.93)	neutral(0.009)	HMMPfam_Patched
ACOT9	23597	genome.wustl.edu	37	X	23722831	23722831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037171.1	-1	reviewed	p.V413A	1.000	387	0%	218	38.5%	-	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	superfamily_Thioesterase/thiol ester dehydrase-isomerase
ACOT9	23597	genome.wustl.edu	37	X	23740088	23740088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037171.1	-1	reviewed	p.K166N	0.017	296	0%	174	33.9%	-	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	superfamily_Thioesterase/thiol ester dehydrase-isomerase
SAT1	6303	genome.wustl.edu	37	X	23801977	23801977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002970.2	+1	reviewed	p.P60L	1.000	294	0%	178	38.2%	-	-	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	superfamily_Acyl-CoA N-acyltransferases (Nat)
CXorf58	254158	genome.wustl.edu	37	X	23953312	23953312	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152761.2	+1	validated	e6-1	0.995	166	0%	91	31.9%	-	-	-	-	-	-
KLHL15	80311	genome.wustl.edu	37	X	24006955	24006955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030624.2	-1	reviewed	p.L300I	1.000	150	0%	97	34%	-	-	benign(0.085)	tolerated(0.51)	neutral(0.015)	superfamily_Gal_oxid_central
KLHL15	80311	genome.wustl.edu	37	X	24024640	24024640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030624.2	-1	reviewed	p.R57S	1.000	151	0%	148	43.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
FAM48B2	170067	genome.wustl.edu	37	X	24329928	24329928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136233.1	-1	provisional	p.A502V	0.000	104	0%	55	45.5%	-	-	-	-	-	NULL
POLA1	5422	genome.wustl.edu	37	X	24735004	24735004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016937.3	+1	reviewed	p.V202F	0.897	279	0%	109	40.4%	-	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
POLA1	5422	genome.wustl.edu	37	X	24745074	24745074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016937.3	+1	reviewed	p.D467N	1.000	207	0%	127	26%	-	-	benign(0.039)	tolerated(0.59)	neutral(0.006)	HMMPfam_DNA_pol_B_exo,superfamily_RNaseH_fold
POLA1	5422	genome.wustl.edu	37	X	24833169	24833169	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016937.3	+1	reviewed	p.E1118*	1.000	349	0%	149	31.5%	-	-	-	-	-	HMMPfam_DNA_pol_B,superfamily_SSF56672
ARX	170302	genome.wustl.edu	37	X	25022875	25022875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139058.2	-1	reviewed	p.A534V	1.000	19	0%	16	31.2%	-	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_OAR
MAGEB6	158809	genome.wustl.edu	37	X	26212723	26212723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173523.2	+1	reviewed	p.E254K	0.004	191	0%	117	41%	-	-	probably_damaging(0.986)	tolerated(0.07)	deleterious(0.754)	HMMPfam_MAGE
MAGEB6	158809	genome.wustl.edu	37	X	26212948	26212948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173523.2	+1	reviewed	p.R329W	0.000	714	0.1%	327	36.1%	-	-	benign(0.397)	deleterious(0.04)	deleterious(0.476)	HMMPfam_MAGE
MAGEB6	158809	genome.wustl.edu	37	X	26213146	26213146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173523.2	+1	reviewed	p.L395V	0.000	252	0%	129	39.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DCAF8L1	139425	genome.wustl.edu	37	X	27998088	27998088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017930.1	-1	reviewed	p.S455N	1.000	225	0%	135	37.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like
DCAF8L1	139425	genome.wustl.edu	37	X	27998341	27998341	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017930.1	-1	reviewed	p.E371*	0.855	447	0%	234	31.6%	-	-	-	-	-	superfamily_WD40_like
DCAF8L1	139425	genome.wustl.edu	37	X	27998992	27998992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017930.1	-1	reviewed	p.R154C	0.994	172	0%	108	37%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_WD40_like
IL1RAPL1	11141	genome.wustl.edu	37	X	29301070	29301070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014271.3	+1	reviewed	p.D33G	1.000	321	0%	199	37.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
IL1RAPL1	11141	genome.wustl.edu	37	X	29973723	29973723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014271.3	+1	reviewed	p.R626Q	1.000	137	0%	89	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAGEB2	4113	genome.wustl.edu	37	X	30237087	30237087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002364.4	+1	reviewed	p.K130N	0.010	219	0%	111	31.5%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_MAGE
MAGEB4	4115	genome.wustl.edu	37	X	30260349	30260349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002367.3	+1	reviewed	p.A33T	0.004	302	0%	170	34.1%	-	-	probably_damaging(0.973)	tolerated(0.37)	neutral(0.434)	NULL
MAGEB1	4112	genome.wustl.edu	37	X	30268716	30268716	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002363.4	+1	reviewed	p.E36*	0.000	70	0%	52	44.2%	-	-	-	-	-	NULL
CXorf21	80231	genome.wustl.edu	37	X	30578160	30578160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025159.2	-1	validated	p.D105Y	0.756	182	0%	118	41.5%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
GK	2710	genome.wustl.edu	37	X	30719011	30719011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128127.1	+1	reviewed	p.Q274H	0.998	347	0%	144	35.4%	-	-	possibly_damaging(0.905)	deleterious(0.03)	deleterious(0.724)	HMMPfam_FGGY_C,superfamily_SSF53067
TAB3	257397	genome.wustl.edu	37	X	30872556	30872556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152787.3	-1	reviewed	p.S409F	1.000	916	0%	412	34%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
FTHL17	53940	genome.wustl.edu	37	X	31089824	31089824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031894.2	-1	reviewed	p.L83I	0.005	101	0%	81	17.3%	-	-	benign(0.043)	deleterious(0)	neutral(0.447)	HMMPfam_Ferritin,superfamily_Ferritin/RR_like
DMD	1756	genome.wustl.edu	37	X	31139979	31139979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004021.2	-1	reviewed	p.V1235F	1.000	402	0%	181	29.3%	-	-	unknown(0)	deleterious(0)	-	NULL
DMD	1756	genome.wustl.edu	37	X	31196786	31196786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.T3408N	1.000	442	0%	240	28.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DMD	1756	genome.wustl.edu	37	X	31462732	31462732	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.E2984*	1.000	255	0%	167	34.7%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	31497160	31497160	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.R2870*	0.993	486	0.2%	231	35.9%	-	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	31525436	31525436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.F2784L	1.000	764	0%	425	38.6%	-	-	benign(0.001)	tolerated(0.67)	neutral(0.003)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	31645951	31645951	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.E2686*	1.000	222	0%	137	34.3%	-	-	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32456460	32456460	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.I1323	1.000	507	0%	270	27.8%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32466746	32466746	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.E1205*	1.000	397	0.3%	203	36.5%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32536099	32536099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000288447	-1	known	p.S765Y	0.000	98	0%	48	31.2%	-	-	benign(0)	-	-	NULL
DMD	1756	genome.wustl.edu	37	X	32632488	32632488	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.R472	0.994	1121	0%	506	37%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47A	158724	genome.wustl.edu	37	X	34148044	34148044	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.I784	0.000	246	0%	105	38.1%	-	-	-	-	-	NULL
FAM47A	158724	genome.wustl.edu	37	X	34149477	34149477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.E307K	0.051	73	0%	29	20.7%	-	-	probably_damaging(0.995)	tolerated(0.38)	deleterious(0.475)	NULL
TMEM47	83604	genome.wustl.edu	37	X	34648451	34648451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031442.3	-1	reviewed	p.K175N	1.000	697	0%	276	37.3%	-	-	benign(0.072)	tolerated(0.2)	neutral(0.054)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962165	34962165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152631.2	+1	validated	p.R406Q	0.076	145	0%	129	17.1%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962588	34962588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152631.2	+1	validated	p.R547M	0.002	251	0%	134	16.4%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
CXorf22	170063	genome.wustl.edu	37	X	35944221	35944221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152632.3	+1	validated	p.E113K	0.644	197	0%	84	27.4%	-	-	probably_damaging(0.956)	tolerated(0.08)	deleterious(0.700)	NULL
CXorf22	170063	genome.wustl.edu	37	X	35989839	35989839	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152632.3	+1	validated	p.L703	0.003	74	0%	25	24%	-	-	-	-	-	NULL
CXorf22	170063	genome.wustl.edu	37	X	35993380	35993380	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152632.3	+1	validated	p.E791*	0.997	301	0%	139	12.9%	-	-	-	-	-	NULL
FAM47C	442444	genome.wustl.edu	37	X	37027397	37027397	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013736.2	+1	validated	p.D305A	0.098	252	0%	165	23.6%	-	-	unknown(0)	tolerated(0.27)	-	NULL
FAM47C	442444	genome.wustl.edu	37	X	37028317	37028317	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013736.2	+1	validated	p.E612*	0.000	198	0%	122	18%	-	-	-	-	-	NULL
PRRG1	5638	genome.wustl.edu	37	X	37312719	37312719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000950.2	+1	reviewed	p.P168T	1.000	263	0%	160	35%	-	-	benign(0.094)	tolerated(0.09)	neutral(0.303)	NULL
CYBB	1536	genome.wustl.edu	37	X	37663303	37663303	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000397.3	+1	reviewed	p.I357	0.000	261	0%	132	36.4%	-	-	-	-	-	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like
CYBB	1536	genome.wustl.edu	37	X	37668882	37668882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000397.3	+1	reviewed	p.K508N	1.000	383	0%	163	34.4%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
CXorf27	25763	genome.wustl.edu	37	X	37850107	37850107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012274.1	+1	validated	p.K5N	0.000	294	0%	101	30.7%	-	-	unknown(0)	deleterious(0)	-	superfamily_Histone-fold
SYTL5	94122	genome.wustl.edu	37	X	37961616	37961616	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138780.2	+1	reviewed	p.E362*	0.992	287	0%	194	29.9%	-	-	-	-	-	NULL
SYTL5	94122	genome.wustl.edu	37	X	37979659	37979659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138780.2	+1	reviewed	p.V549F	0.909	500	0%	251	35.9%	-	-	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	superfamily_C2_CaLB
SRPX	8406	genome.wustl.edu	37	X	38016186	38016186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006307.4	-1	validated	p.R351Q	1.000	199	0.5%	132	31.1%	-	-	possibly_damaging(0.736)	tolerated(0.07)	deleterious(0.588)	NULL
RPGR	6103	genome.wustl.edu	37	X	38146199	38146199	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034853.1	-1	reviewed	p.E685*	0.030	1417	0%	794	34.8%	-	-	-	-	-	NULL
BCOR	54880	genome.wustl.edu	37	X	39916551	39916551	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427012	-1	known	p.R179K	1.000	177	0%	119	32.8%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
BCOR	54880	genome.wustl.edu	37	X	39930238	39930238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.E1076K	0.996	564	0%	287	28.2%	-	-	benign(0.003)	tolerated(0.37)	neutral(0.019)	NULL
BCOR	54880	genome.wustl.edu	37	X	39931668	39931668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.F977L	1.000	114	0%	100	41%	-	-	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	NULL
BCOR	54880	genome.wustl.edu	37	X	39932639	39932639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.P654T	1.000	169	0%	98	32.7%	-	-	benign(0.405)	deleterious(0)	deleterious(0.575)	NULL
ATP6AP2	10159	genome.wustl.edu	37	X	40464866	40464866	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005765.2	+1	reviewed	p.S304	0.000	394	0.3%	209	39.2%	-	-	-	-	-	HMMPfam_Renin_r
MED14	9282	genome.wustl.edu	37	X	40522196	40522196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.R1222I	1.000	264	0%	158	31.6%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MED14	9282	genome.wustl.edu	37	X	40556309	40556309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.F539L	0.987	598	0%	287	29.3%	-	-	possibly_damaging(0.843)	deleterious(0.01)	deleterious(0.729)	NULL
MED14	9282	genome.wustl.edu	37	X	40573155	40573155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.K176T	1.000	579	0%	345	41.4%	-	-	benign(0.382)	deleterious(0.01)	deleterious(0.528)	HMMPfam_MED14
USP9X	8239	genome.wustl.edu	37	X	41047318	41047318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.S1253L	0.735	357	0.3%	191	11.5%	-	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
USP9X	8239	genome.wustl.edu	37	X	41060377	41060377	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.F1556	1.000	371	0%	269	39.8%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
CASK	8573	genome.wustl.edu	37	X	41519763	41519763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003688.3	-1	reviewed	p.R254C	1.000	379	0%	225	38.7%	-	-	possibly_damaging(0.899)	tolerated(0.1)	deleterious(0.642)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAOB	4129	genome.wustl.edu	37	X	43640732	43640732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000898.4	-1	reviewed	p.D330Y	1.000	139	0%	85	29.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
EFHC2	80258	genome.wustl.edu	37	X	44035607	44035607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000333807	-1	known	p.D658G	0.016	630	0%	310	36.1%	-	-	probably_damaging(0.984)	tolerated(0.09)	deleterious(0.727)	superfamily_EF-hand
KDM6A	7403	genome.wustl.edu	37	X	44969346	44969346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021140.2	+1	reviewed	p.F1343C	1.000	294	0%	161	34.2%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ZNF673	55634	genome.wustl.edu	37	X	46332264	46332264	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129898.1	+1	validated	p.G111	0.005	369	0%	185	30.8%	-	-	-	-	-	NULL
ZNF674	641339	genome.wustl.edu	37	X	46359460	46359460	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039891.2	-1	validated	p.E522*	1.000	498	0%	278	39.6%	-	-	-	-	-	superfamily_SSF57667
ZNF674	641339	genome.wustl.edu	37	X	46359642	46359642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039891.2	-1	validated	p.R461I	0.989	398	0%	204	34.8%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF674	641339	genome.wustl.edu	37	X	46360319	46360319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039891.2	-1	validated	p.Q235H	0.950	418	0%	222	32%	-	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RP2	6102	genome.wustl.edu	37	X	46719517	46719517	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006915.2	+1	reviewed	p.F288C	0.999	344	0%	169	37.3%	-	-	benign(0.212)	tolerated(0.11)	neutral(0.292)	superfamily_NDK
PHF16	9767	genome.wustl.edu	37	X	46857553	46857553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077445.1	+1	reviewed	p.K53T	1.000	249	0%	169	39.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_EPL1
PHF16	9767	genome.wustl.edu	37	X	46887353	46887353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077445.1	+1	reviewed	p.C179R	1.000	425	0%	229	34.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RBM10	8241	genome.wustl.edu	37	X	47045663	47045663	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005676.3	+1	reviewed	p.F848	1.000	97	0%	87	37.9%	-	-	-	-	-	NULL
UBA1	7317	genome.wustl.edu	37	X	47062947	47062947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003334.3	+1	reviewed	p.A476V	1.000	378	0%	241	37.3%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_ThiF,superfamily_MoeB
CDK16	5127	genome.wustl.edu	37	X	47086251	47086251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033018.3	+1	reviewed	p.P366S	1.000	144	0%	90	43.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
USP11	8237	genome.wustl.edu	37	X	47092372	47092372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.P20L	1.000	69	0%	47	48.9%	-	-	possibly_damaging(0.931)	-	-	NULL
USP11	8237	genome.wustl.edu	37	X	47098872	47098872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.E180K	1.000	130	0%	88	34.1%	-	-	probably_damaging(0.977)	tolerated(0.13)	deleterious(0.671)	HMMSmart_DUSP,HMMPfam_DUF1055
USP11	8237	genome.wustl.edu	37	X	47101534	47101534	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.I454	0.043	208	0%	144	38.2%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP11	8237	genome.wustl.edu	37	X	47102117	47102117	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.F570	1.000	401	0%	253	17.8%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP11	8237	genome.wustl.edu	37	X	47104843	47104843	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.L787	1.000	138	0%	80	36.2%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF157	7712	genome.wustl.edu	37	X	47272249	47272249	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003446.3	+1	reviewed	p.A259	0.986	240	0%	144	41%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SYN1	6853	genome.wustl.edu	37	X	47466427	47466427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006950.3	-1	reviewed	p.F148L	1.000	570	0%	343	34.4%	-	-	probably_damaging(0.987)	tolerated(0.05)	deleterious(0.782)	HMMPfam_Synapsin,superfamily_PreATP-grasp domain
CFP	5199	genome.wustl.edu	37	X	47487606	47487606	+	Missense_Mutation	SNP	G	G	A	rs132630259		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145252.1	-1	reviewed	p.R100W	1.000	75	0%	49	40.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
ZNF81	347344	genome.wustl.edu	37	X	47774500	47774500	+	Missense_Mutation	SNP	G	G	A	rs181393507	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007137.3	+1	reviewed	p.R152H	0.000	125	0%	47	31.9%	-	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
ZNF81	347344	genome.wustl.edu	37	X	47775514	47775514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007137.3	+1	reviewed	p.R490I	1.000	172	0%	95	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF182	7569	genome.wustl.edu	37	X	47836221	47836221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006962.1	-1	reviewed	p.R422I	1.000	311	0%	190	36.8%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF182	7569	genome.wustl.edu	37	X	47836305	47836305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006962.1	-1	reviewed	p.R394I	0.998	292	0%	192	34.4%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF182	7569	genome.wustl.edu	37	X	47847976	47847976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006962.1	-1	reviewed	p.S7Y	0.443	297	0%	177	13.6%	-	-	possibly_damaging(0.578)	-	-	NULL
SSX5	6758	genome.wustl.edu	37	X	48054271	48054271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021015.3	-1	reviewed	p.K71T	0.082	807	0%	426	36.2%	-	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SSX4B	548313	genome.wustl.edu	37	X	48270215	48270215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034832.2	-1	reviewed	p.N54K	0.254	1325	0%	699	14.6%	-	-	benign(0.003)	tolerated(0.26)	neutral(0.034)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
PORCN	64840	genome.wustl.edu	37	X	48370823	48370823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000470275	+1	known	p.R166C	1.000	120	0%	107	39.3%	-	-	-	-	-	NULL
TBC1D25	4943	genome.wustl.edu	37	X	48417562	48417562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002536.2	+1	validated	p.S178Y	1.000	184	0%	132	37.1%	-	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
RBM3	5935	genome.wustl.edu	37	X	48433958	48433958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006743.3	+1	reviewed	p.V38G	1.000	159	0%	109	33%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
WAS	7454	genome.wustl.edu	37	X	48546788	48546788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000377.2	+1	reviewed	p.F293L	1.000	127	0%	76	34.2%	-	-	possibly_damaging(0.837)	tolerated(0.09)	deleterious(0.616)	HMMPfam_PBD,superfamily_WASP_C
ENSG00000207367	0	genome.wustl.edu	37	X	48635476	48635476	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384637	-1	novel	NULL	0.039	43	0%	73	26%	-	-	-	-	-	-
GATA1	2623	genome.wustl.edu	37	X	48651632	48651632	+	Silent	SNP	G	G	A	rs184692721	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447551	+1	known	p.R31Q	0.298	184	0%	123	26%	-	-	-	-	-	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
HDAC6	10013	genome.wustl.edu	37	X	48672939	48672939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006044.2	+1	reviewed	p.G300D	0.882	346	0%	181	30.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
HDAC6	10013	genome.wustl.edu	37	X	48681858	48681858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006044.2	+1	reviewed	p.E1017K	0.001	48	0%	39	51.3%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
ERAS	3266	genome.wustl.edu	37	X	48688095	48688095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181532.2	+1	provisional	p.V188M	1.000	85	0%	54	40.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
PQBP1	10084	genome.wustl.edu	37	X	48755850	48755850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032381.1	+1	reviewed	p.L20M	0.978	279	0%	222	36%	-	-	benign(0.013)	tolerated(0.15)	neutral(0.241)	NULL
CCDC120	90060	genome.wustl.edu	37	X	48919624	48919624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422185	+1	known	p.D18Y	0.069	38	0%	30	40%	-	-	-	-	-	NULL
CCDC120	90060	genome.wustl.edu	37	X	48921977	48921977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033626.2	+1	reviewed	p.L134S	0.853	12	0%	10	40%	-	-	probably_damaging(0.999)	tolerated(0.76)	deleterious(0.491)	NULL
PRAF2	11230	genome.wustl.edu	37	X	48929606	48929606	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007213.1	-1	provisional	p.I153	0.212	175	0%	100	33%	-	-	-	-	-	HMMPfam_PRA1
PLP2	5355	genome.wustl.edu	37	X	49028358	49028358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002668.2	+1	reviewed	p.S4Y	0.004	54	0%	61	37.7%	-	-	benign(0.267)	deleterious(0.01)	neutral(0.434)	NULL
PLP2	5355	genome.wustl.edu	37	X	49030742	49030742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002668.2	+1	reviewed	p.R136W	0.024	251	0%	206	38.8%	-	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMPfam_MARVEL
PRICKLE3	4007	genome.wustl.edu	37	X	49032031	49032031	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453382	-1	known	p.R626C	0.712	75	0%	48	35.4%	-	-	-	-	-	NULL
CACNA1F	778	genome.wustl.edu	37	X	49087767	49087767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.P93L	1.000	167	0%	100	34%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	superfamily_Voltage-gated potassium channels
CCDC22	28952	genome.wustl.edu	37	X	49104879	49104879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014008.3	+1	validated	p.E408D	1.000	65	0%	41	41.5%	-	-	benign(0.197)	tolerated(0.73)	neutral(0.020)	HMMPfam_DUF812
AKAP4	8852	genome.wustl.edu	37	X	49957876	49957876	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003886.2	-1	reviewed	p.V496	0.672	392	0%	213	34.3%	-	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP4	8852	genome.wustl.edu	37	X	49958036	49958036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003886.2	-1	reviewed	p.S443Y	0.854	204	0.5%	107	29.9%	-	-	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	HMMPfam_AKAP_110,HMMSmart_SM00807
CCNB3	85417	genome.wustl.edu	37	X	50052215	50052215	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.S349*	0.001	212	0.5%	96	27.1%	-	-	-	-	-	NULL
CCNB3	85417	genome.wustl.edu	37	X	50052782	50052782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.T538I	0.000	91	0%	49	32.7%	-	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50053291	50053291	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.K708*	0.000	102	0%	34	26.5%	-	-	-	-	-	NULL
CCNB3	85417	genome.wustl.edu	37	X	50054274	50054274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.E1035D	0.000	300	0%	165	35.8%	-	-	benign(0.226)	deleterious(0)	neutral(0.467)	NULL
DGKK	139189	genome.wustl.edu	37	X	50118057	50118057	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376025	-1	known	NULL	0.997	332	0%	187	33.2%	-	-	-	-	-	-
DGKK	139189	genome.wustl.edu	37	X	50127716	50127716	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376025	-1	known	NULL	0.995	437	0%	214	41.1%	-	-	-	-	-	-
SHROOM4	57477	genome.wustl.edu	37	X	50351088	50351088	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.I1018	0.226	174	0%	79	38%	-	-	-	-	-	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50376329	50376329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.R915I	1.000	280	0%	173	36.4%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50377155	50377155	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.L640	0.689	299	0%	174	29.9%	-	-	-	-	-	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50377847	50377847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.R409H	1.000	113	0%	71	29.6%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50378021	50378021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.S351N	0.011	124	0%	48	31.2%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50438805	50438805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.L84I	1.000	198	0%	125	37.6%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00228,superfamily_PDZ domain-like
CXorf67	340602	genome.wustl.edu	37	X	51150190	51150190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342995	+1	known	p.E108K	0.000	51	2%	43	41.9%	-	-	benign(0.226)	tolerated(0.32)	neutral(0.046)	NULL
GSPT2	23708	genome.wustl.edu	37	X	51488025	51488025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018094.4	+1	reviewed	p.I435L	1.000	286	0%	153	36.6%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	superfamily_Translat_factor,superfamily_SSF52540
MAGED1	9500	genome.wustl.edu	37	X	51638385	51638385	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005333.1	+1	reviewed	p.F150	1.000	119	0%	49	34.7%	-	-	-	-	-	NULL
MAGED1	9500	genome.wustl.edu	37	X	51638467	51638467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005333.1	+1	reviewed	p.P178S	0.936	111	0%	79	31.6%	-	-	benign(0.189)	tolerated(0.07)	neutral(0.337)	NULL
GPR173	54328	genome.wustl.edu	37	X	53106844	53106844	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018969.5	+1	reviewed	p.L347	1.000	76	0%	68	23.5%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
TSPYL2	64061	genome.wustl.edu	37	X	53115071	53115071	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022117.3	+1	reviewed	p.A499	0.001	793	0%	358	25.4%	-	-	-	-	-	NULL
TSPYL2	64061	genome.wustl.edu	37	X	53115193	53115193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022117.3	+1	reviewed	p.G540D	0.038	854	0%	464	36.2%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
TSPYL2	64061	genome.wustl.edu	37	X	53115434	53115434	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022117.3	+1	reviewed	p.Y620	0.004	352	0%	191	25.1%	-	-	-	-	-	NULL
HSD17B10	3028	genome.wustl.edu	37	X	53458945	53458945	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004493.2	-1	reviewed	p.F159	1.000	224	0.4%	171	28.1%	-	-	-	-	-	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
HSD17B10	3028	genome.wustl.edu	37	X	53460712	53460712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004493.2	-1	reviewed	p.Q50R	0.874	88	0%	55	36.4%	-	-	benign(0.01)	tolerated(0.05)	neutral(0.346)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
HUWE1	10075	genome.wustl.edu	37	X	53563516	53563516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.S4084P	1.000	495	0.2%	265	41.1%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HUWE1	10075	genome.wustl.edu	37	X	53566739	53566739	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427052	-1	known	p.G2871*	0.995	212	0%	117	38.5%	-	-	unknown(0)	tolerated(0.45)	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53575177	53575177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.R3365W	1.000	129	0%	70	40%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53607796	53607796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.G1904E	1.000	86	0%	37	29.7%	-	-	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53610781	53610781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.D1753Y	1.000	167	0%	106	33%	-	-	possibly_damaging(0.852)	deleterious(0.02)	deleterious(0.711)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53613850	53613850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.A1545V	1.000	191	0%	95	31.6%	-	-	probably_damaging(0.998)	tolerated(0.54)	deleterious(0.482)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53615366	53615366	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427052	-1	known	p.L564I	0.997	260	0%	155	33.5%	-	-	-	-	-	superfamily_ARM repeat
LOC100288560	100288560	genome.wustl.edu	37	X	53852560	53852560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344197.1	+1	model	p.S60Y	0.332	199	0%	117	39.3%	-	-	-	-	-	superfamily_Ribosomal protein S18
PHF8	23133	genome.wustl.edu	37	X	54011425	54011425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015107.2	-1	reviewed	p.E789K	0.990	223	0%	178	29.8%	-	-	possibly_damaging(0.481)	tolerated(0.72)	neutral(0.161)	NULL
WNK3	65267	genome.wustl.edu	37	X	54224972	54224972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.P1730S	0.996	281	0%	121	35.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WNK3	65267	genome.wustl.edu	37	X	54228503	54228503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.S1665Y	0.974	713	0%	403	35.7%	-	-	benign(0.273)	deleterious(0.04)	neutral(0.378)	NULL
WNK3	65267	genome.wustl.edu	37	X	54335670	54335670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.F263L	1.000	229	0%	145	27.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ITIH6	347365	genome.wustl.edu	37	X	54784245	54784245	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.T754	0.042	486	0.2%	302	39.4%	-	-	-	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54800549	54800549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.V290I	0.031	268	0%	125	11.2%	-	-	possibly_damaging(0.68)	tolerated(0.38)	neutral(0.260)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ITIH6	347365	genome.wustl.edu	37	X	54818408	54818408	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.Y107D	1.000	1027	0%	561	11.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_VIT,HMMPfam_VIT
TRO	7216	genome.wustl.edu	37	X	54952860	54952860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039705.1	+1	reviewed	p.K532R	0.987	551	0%	357	38.7%	-	-	possibly_damaging(0.917)	tolerated(0.13)	deleterious(0.621)	HMMPfam_MAGE
TRO	7216	genome.wustl.edu	37	X	54956457	54956457	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039705.1	+1	reviewed	p.G1100	0.000	63	0%	64	37.5%	-	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54957706	54957706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016157.2	+1	reviewed	p.P686T	0.824	749	0.3%	387	37.5%	-	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	NULL
APEX2	27301	genome.wustl.edu	37	X	55028007	55028007	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014481.2	+1	reviewed	p.I62	0.460	137	0%	74	33.8%	-	-	-	-	-	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ALAS2	212	genome.wustl.edu	37	X	55041376	55041376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000032.4	-1	reviewed	p.A414D	1.000	165	0%	78	43.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
FOXR2	139628	genome.wustl.edu	37	X	55650672	55650672	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198451.3	+1	validated	p.Q176	0.073	190	0%	93	36.6%	-	-	-	-	-	NULL
ASB12	142689	genome.wustl.edu	37	X	63444983	63444983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130388.2	-1	reviewed	p.G174D	1.000	157	0%	104	33.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_ANK,superfamily_ANK
MTMR8	55613	genome.wustl.edu	37	X	63574667	63574667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017677.3	-1	reviewed	p.R153I	0.998	549	0%	231	42.9%	-	-	unknown(0)	tolerated(0.1)	-	superfamily_(Phosphotyrosine protein) phosphatases II
ZC4H2	55906	genome.wustl.edu	37	X	64139980	64139980	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018684.2	-1	validated	p.E127*	1.000	231	0%	174	38.5%	-	-	-	-	-	HMMPfam_zf-C4H2
LAS1L	81887	genome.wustl.edu	37	X	64738072	64738072	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031206.4	-1	validated	p.V574	0.000	614	0%	297	23.6%	-	-	-	-	-	NULL
LAS1L	81887	genome.wustl.edu	37	X	64738300	64738300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031206.4	-1	validated	p.E498D	1.000	116	0%	87	32.2%	-	-	probably_damaging(0.99)	tolerated(0.05)	deleterious(0.787)	NULL
MSN	4478	genome.wustl.edu	37	X	64955178	64955178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.A282V	1.000	280	0%	189	36%	-	-	possibly_damaging(0.502)	deleterious(0.04)	deleterious(0.516)	HMMPfam_FERM_C,superfamily_SSF50729
LOC100288788	100288788	genome.wustl.edu	37	X	65176715	65176715	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343822.1	-1	model	p.V108	0.981	264	0%	197	10.2%	-	-	-	-	-	superfamily_RNA-binding domain RBD
HEPH	9843	genome.wustl.edu	37	X	65423221	65423221	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.Y701F	1.000	144	0%	83	24.1%	-	-	benign(0.017)	tolerated(0.7)	neutral(0.003)	PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65423311	65423311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.R731H	0.003	245	0%	140	38.6%	-	-	benign(0.002)	tolerated(0.56)	neutral(0.006)	superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65486459	65486459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.R1144H	0.985	541	0%	326	16%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
OPHN1	4983	genome.wustl.edu	37	X	67518843	67518843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002547.2	-1	reviewed	p.A84T	1.000	325	0%	154	28.6%	-	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
YIPF6	286451	genome.wustl.edu	37	X	67731803	67731803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173834.2	+1	provisional	p.S57Y	1.000	408	0%	237	31.6%	-	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
YIPF6	286451	genome.wustl.edu	37	X	67741237	67741237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173834.2	+1	provisional	p.D111G	1.000	569	0%	314	40.1%	-	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	HMMPfam_Yip1
STARD8	9754	genome.wustl.edu	37	X	67944177	67944177	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142503.2	+1	reviewed	p.V1075	0.919	149	0%	71	36.6%	-	-	-	-	-	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
AWAT1	158833	genome.wustl.edu	37	X	69459693	69459693	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013579.2	+1	reviewed	p.I247	0.000	445	0%	281	33.5%	-	-	-	-	-	HMMPfam_DAGAT
AWAT1	158833	genome.wustl.edu	37	X	69460116	69460116	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013579.2	+1	reviewed	p.E321	0.995	232	0%	198	35.9%	-	-	-	-	-	HMMPfam_DAGAT
P2RY4	5030	genome.wustl.edu	37	X	69479051	69479051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002565.3	-1	reviewed	p.R142W	0.523	133	0.8%	93	50.5%	-	-	possibly_damaging(0.884)	deleterious(0.01)	deleterious(0.750)	HMMPfam_7tm_1,superfamily_SSF81321
ARR3	407	genome.wustl.edu	37	X	69500419	69500419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004312.2	+1	validated	p.D334Y	0.997	668	0%	287	31%	-	-	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_Arrestin_C,superfamily_E set domains
PDZD11	51248	genome.wustl.edu	37	X	69507147	69507147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016484.4	-1	validated	p.R123C	1.000	249	0%	136	43.4%	-	-	probably_damaging(0.968)	deleterious(0.05)	deleterious(0.755)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
KIF4A	24137	genome.wustl.edu	37	X	69510560	69510560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012310.4	+1	reviewed	p.K47R	1.000	498	0%	290	32.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF4A	24137	genome.wustl.edu	37	X	69594013	69594013	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012310.4	+1	reviewed	p.E563*	0.986	211	0%	98	29.6%	-	-	-	-	-	NULL
KIF4A	24137	genome.wustl.edu	37	X	69640060	69640060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012310.4	+1	reviewed	p.A1215V	0.998	265	0.8%	109	12.8%	-	-	benign(0.15)	tolerated(0.15)	neutral(0.254)	NULL
DLG3	1741	genome.wustl.edu	37	X	69668801	69668801	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021120.3	+1	reviewed	p.I132	0.991	359	0%	162	27.2%	-	-	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
SLC7A3	84889	genome.wustl.edu	37	X	70148013	70148013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048164.2	-1	reviewed	p.D268N	1.000	247	0%	113	45.1%	-	-	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMPfam_AA_permease
SNX12	29934	genome.wustl.edu	37	X	70281730	70281730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013346.2	-1	reviewed	p.E117K	1.000	110	0%	57	47.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
FOXO4	4303	genome.wustl.edu	37	X	70316565	70316565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005938.3	+1	reviewed	p.R63C	0.965	45	0%	19	31.6%	-	-	possibly_damaging(0.462)	tolerated(0.05)	deleterious(0.497)	HMMPfam_Fork_head
MED12	9968	genome.wustl.edu	37	X	70339568	70339568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.E79D	1.000	188	0%	149	30.2%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
MED12	9968	genome.wustl.edu	37	X	70339677	70339677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.W116R	1.000	112	0%	114	37.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Med12
MED12	9968	genome.wustl.edu	37	X	70344691	70344691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.F684L	1.000	362	0%	222	32.4%	-	-	benign(0.022)	tolerated(0.66)	neutral(0.004)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70367986	70367986	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.I129	0.997	92	0%	75	38.7%	-	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
NLGN3	54413	genome.wustl.edu	37	X	70375198	70375198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.R218W	1.000	350	0%	206	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_SSF53474
NLGN3	54413	genome.wustl.edu	37	X	70389395	70389395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.K645N	1.000	161	0%	110	29.1%	-	-	benign(0.004)	tolerated(0.16)	neutral(0.059)	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70464302	70464302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005096.3	-1	reviewed	p.L1044F	0.988	132	0%	112	30.4%	-	-	possibly_damaging(0.817)	tolerated(0.38)	neutral(0.327)	NULL
NONO	4841	genome.wustl.edu	37	X	70514253	70514253	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418921	+1	known	p.R37K	1.000	453	0%	246	36.6%	-	-	-	-	-	superfamily_RNA-binding domain RBD
TAF1	6872	genome.wustl.edu	37	X	70603855	70603855	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.F684C	1.000	628	0%	329	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OGT	8473	genome.wustl.edu	37	X	70787407	70787407	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181672.2	+1	reviewed	p.E883*	1.000	288	0%	211	38.4%	-	-	-	-	-	NULL
ACRC	93953	genome.wustl.edu	37	X	70823852	70823852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052957.4	+1	validated	p.S242L	0.010	459	0%	243	32.9%	-	-	unknown(0)	deleterious(0.03)	-	NULL
CXCR3	2833	genome.wustl.edu	37	X	70836766	70836766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001504.1	-1	reviewed	p.D186N	0.780	106	0%	52	28.8%	-	-	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RGAG4	340526	genome.wustl.edu	37	X	71350235	71350235	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024455.3	-1	validated	p.E386*	0.093	592	0.2%	367	28.1%	-	-	-	-	-	NULL
RGAG4	340526	genome.wustl.edu	37	X	71350800	71350800	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024455.3	-1	validated	p.G197	0.000	79	0%	38	44.7%	-	-	-	-	-	HMMPfam_Retrotrans_gag
NHSL2	340527	genome.wustl.edu	37	X	71359136	71359136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013627.2	+1	provisional	p.D214N	1.000	134	0%	116	28.4%	-	-	probably_damaging(0.99)	tolerated(0.55)	neutral(0.449)	NULL
NAP1L2	4674	genome.wustl.edu	37	X	72433307	72433307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021963.2	-1	reviewed	p.V341A	1.000	165	0%	81	30.9%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_NAP
CDX4	1046	genome.wustl.edu	37	X	72667271	72667271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005193.1	+1	provisional	p.S61I	0.990	89	0%	64	43.8%	-	-	benign(0.045)	tolerated(0.17)	neutral(0.061)	HMMPfam_Caudal_act
JPX	554203	genome.wustl.edu	37	X	73289704	73289704	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024582.1	+1	validated	NULL	1.000	41	0%	40	47.5%	-	-	-	-	-	-
BMP2KL	347359	genome.wustl.edu	37	X	73406355	73406355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373488	+1	known	p.E201K	0.999	85	0%	47	34%	-	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	NULL
ZCCHC13	389874	genome.wustl.edu	37	X	73524329	73524329	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203303.2	+1	reviewed	p.I76	0.993	166	0%	109	41.3%	-	-	-	-	-	HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC,superfamily_SSF57756
SLC16A2	6567	genome.wustl.edu	37	X	73751177	73751177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006517.3	+1	reviewed	p.R544H	0.577	316	0.3%	151	32.5%	-	-	benign(0.071)	tolerated(0.53)	neutral(0.013)	superfamily_MFS_gen_substrate_transporter
RLIM	51132	genome.wustl.edu	37	X	73811358	73811358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016120.3	-1	reviewed	p.D598N	1.000	372	0.3%	212	33.5%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
RLIM	51132	genome.wustl.edu	37	X	73811613	73811613	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016120.3	-1	reviewed	p.R513*	1.000	210	0%	140	33.6%	-	-	-	-	-	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73960895	73960895	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008537.2	-1	validated	p.I1166S	0.984	352	0%	232	39.7%	-	-	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73963606	73963606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008537.2	-1	validated	p.E262D	1.000	259	0%	144	42.4%	-	-	benign(0.253)	deleterious(0)	deleterious(0.471)	NULL
ABCB7	22	genome.wustl.edu	37	X	74293595	74293595	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004299.3	-1	reviewed	p.E322*	1.000	554	0.2%	296	31.8%	-	-	-	-	-	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
UPRT	139596	genome.wustl.edu	37	X	74494186	74494186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145052.3	+1	reviewed	p.D33N	0.028	158	0%	78	16.7%	-	-	benign(0.135)	deleterious(0)	neutral(0.456)	NULL
MAGEE2	139599	genome.wustl.edu	37	X	75003491	75003491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138703.4	-1	validated	p.L466I	0.228	258	0%	127	18.1%	-	-	possibly_damaging(0.585)	tolerated(0.15)	neutral(0.443)	HMMPfam_MAGE
MAGEE2	139599	genome.wustl.edu	37	X	75003815	75003815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138703.4	-1	validated	p.L358I	0.984	163	0%	78	37.2%	-	-	probably_damaging(0.955)	tolerated(0.39)	neutral(0.415)	HMMPfam_MAGE
MAGEE2	139599	genome.wustl.edu	37	X	75004186	75004186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138703.4	-1	validated	p.R234Q	0.001	136	0%	82	40.2%	-	-	benign(0.124)	deleterious(0.01)	neutral(0.416)	HMMPfam_MAGE
MAGEE2	139599	genome.wustl.edu	37	X	75004277	75004277	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138703.4	-1	validated	p.L204	0.000	79	0%	51	29.4%	-	-	-	-	-	HMMPfam_MAGE
ATRX	546	genome.wustl.edu	37	X	76814238	76814238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.D2136N	1.000	225	0%	101	35.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76845384	76845384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.S2046Y	1.000	173	0%	84	35.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76938687	76938687	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.E687	0.972	328	0%	159	43.4%	-	-	-	-	-	NULL
ATP7A	538	genome.wustl.edu	37	X	77245218	77245218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.P367H	0.014	225	0%	160	39.4%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
ATP7A	538	genome.wustl.edu	37	X	77267070	77267070	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.E691*	1.000	648	0%	306	17.6%	-	-	-	-	-	NULL
ATP7A	538	genome.wustl.edu	37	X	77270198	77270198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.Q816K	1.000	281	0%	126	27%	-	-	probably_damaging(1)	tolerated(0.64)	deleterious(0.503)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
ATP7A	538	genome.wustl.edu	37	X	77284774	77284774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.E982K	1.000	283	0%	170	31.2%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
ZCCHC5	203430	genome.wustl.edu	37	X	77913660	77913660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152694.2	-1	reviewed	p.Q86H	0.000	109	0%	82	30.5%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
LPAR4	2846	genome.wustl.edu	37	X	78010480	78010480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005296.2	+1	reviewed	p.K38N	1.000	702	0%	310	32.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Family A G protein-coupled receptor-like
P2RY10	27334	genome.wustl.edu	37	X	78216162	78216162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014499.2	+1	reviewed	p.L49I	1.000	381	0%	205	35.1%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_SSF81321
GPR174	84636	genome.wustl.edu	37	X	78426862	78426862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032553.1	+1	validated	p.L120I	1.000	345	0%	256	37.5%	-	-	benign(0.155)	tolerated(0.77)	neutral(0.014)	HMMPfam_7tm_1,superfamily_SSF81321
ITM2A	9452	genome.wustl.edu	37	X	78616670	78616670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004867.4	-1	reviewed	p.F236L	1.000	188	0%	74	45.9%	-	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
TBX22	50945	genome.wustl.edu	37	X	79286196	79286196	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109878.1	+1	reviewed	p.Q383	0.421	568	0%	303	34.7%	-	-	-	-	-	NULL
TBX22	50945	genome.wustl.edu	37	X	79286363	79286363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109878.1	+1	reviewed	p.S439Y	0.216	410	0%	224	11.2%	-	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
TBX22	50945	genome.wustl.edu	37	X	79286546	79286546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109878.1	+1	reviewed	p.V500A	0.193	196	0%	106	31.1%	-	-	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
FAM46D	169966	genome.wustl.edu	37	X	79699204	79699204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152630.4	+1	validated	p.S389I	0.774	118	0%	70	24.3%	-	-	benign(0.016)	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	79932716	79932716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.L1601V	0.998	416	0%	257	35%	-	-	benign(0.362)	deleterious(0)	deleterious(0.559)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79975093	79975093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.L647I	1.000	672	0%	366	36.1%	-	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
BRWD3	254065	genome.wustl.edu	37	X	79984261	79984261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.H459R	1.000	137	0%	60	28.3%	-	-	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
SH3BGRL	6451	genome.wustl.edu	37	X	80532486	80532486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003022.2	+1	validated	p.K17Q	1.000	181	0%	69	31.9%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_SH3BGR,superfamily_Thioredoxin-like
POU3F4	5456	genome.wustl.edu	37	X	82763491	82763491	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000307.3	+1	reviewed	p.L53	0.980	75	0%	37	27%	-	-	-	-	-	NULL
POU3F4	5456	genome.wustl.edu	37	X	82763946	82763946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000307.3	+1	reviewed	p.R205I	1.000	82	0%	45	26.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_1,superfamily_Lambda_like_DNA
CYLC1	1538	genome.wustl.edu	37	X	83128586	83128586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021118.1	+1	provisional	p.K290N	0.092	99	0%	29	31%	-	-	unknown(0)	tolerated(0.16)	-	NULL
SATL1	340562	genome.wustl.edu	37	X	84362715	84362715	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012980.2	-1	validated	p.G233	0.000	878	0.1%	623	34.8%	-	-	-	-	-	NULL
SATL1	340562	genome.wustl.edu	37	X	84363934	84363934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509231	-1	known	p.S14L	0.000	850	0.1%	510	15.3%	-	-	benign(0.119)	tolerated(1)	neutral(0.009)	NULL
ZNF711	7552	genome.wustl.edu	37	X	84525770	84525770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021998.4	+1	reviewed	p.H408Y	1.000	120	0%	50	34%	-	-	possibly_damaging(0.95)	tolerated(0.15)	deleterious(0.635)	superfamily_C2H2 and C2HC zinc fingers
ZNF711	7552	genome.wustl.edu	37	X	84525896	84525896	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021998.4	+1	reviewed	p.E450*	1.000	385	0%	142	31%	-	-	-	-	-	NULL
ZNF711	7552	genome.wustl.edu	37	X	84526091	84526091	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021998.4	+1	reviewed	p.R515*	1.000	231	0%	125	35.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POF1B	79983	genome.wustl.edu	37	X	84561224	84561224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024921.3	-1	reviewed	p.R427H	0.017	489	0%	229	30.6%	-	-	possibly_damaging(0.945)	tolerated(0.13)	deleterious(0.642)	NULL
POF1B	79983	genome.wustl.edu	37	X	84614574	84614574	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024921.3	-1	reviewed	p.V140E	0.946	616	0%	295	36.3%	-	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
POF1B	79983	genome.wustl.edu	37	X	84622695	84622695	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024921.3	-1	reviewed	e2+2	0.999	527	0%	265	13.6%	-	-	-	-	-	-
CHM	1121	genome.wustl.edu	37	X	85166276	85166276	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000390.2	-1	reviewed	p.E412*	1.000	192	0%	72	36.1%	-	-	-	-	-	HMMPfam_GDI,superfamily_SSF51905
CHM	1121	genome.wustl.edu	37	X	85218920	85218920	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000390.2	-1	reviewed	p.C151S	0.011	405	0%	213	42.3%	-	-	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_GDI,superfamily_SSF51905
CHM	1121	genome.wustl.edu	37	X	85282494	85282494	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000390.2	-1	reviewed	e2+1	1.000	179	0%	78	37.2%	-	-	-	-	-	-
DACH2	117154	genome.wustl.edu	37	X	85403960	85403960	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053281.3	+1	reviewed	p.K112	1.000	178	0%	111	34.2%	-	-	-	-	-	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain
DACH2	117154	genome.wustl.edu	37	X	85906106	85906106	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053281.3	+1	reviewed	p.T236	0.999	232	0%	125	33.6%	-	-	-	-	-	NULL
DACH2	117154	genome.wustl.edu	37	X	86067986	86067986	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053281.3	+1	reviewed	p.E456	1.000	150	0%	80	36.2%	-	-	-	-	-	NULL
KLHL4	56062	genome.wustl.edu	37	X	86772973	86772973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057162.2	+1	reviewed	p.F26C	1.000	197	0%	111	38.7%	-	-	benign(0.116)	deleterious(0.03)	neutral(0.373)	NULL
KLHL4	56062	genome.wustl.edu	37	X	86772978	86772978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057162.2	+1	reviewed	p.G28C	1.000	194	0%	115	35.7%	-	-	possibly_damaging(0.823)	deleterious(0.01)	deleterious(0.717)	NULL
KLHL4	56062	genome.wustl.edu	37	X	86887341	86887341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057162.2	+1	reviewed	p.G486S	1.000	447	0%	217	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
CPXCR1	53336	genome.wustl.edu	37	X	88009229	88009229	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033048.5	+1	validated	p.N272H	0.000	134	0%	67	14.9%	-	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	NULL
TGIF2LX	90316	genome.wustl.edu	37	X	89177195	89177195	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138960.3	+1	reviewed	p.N37	0.001	314	0%	140	12.1%	-	-	-	-	-	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91090729	91090729	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032968.3	+1	reviewed	p.R76*	0.593	726	0%	432	37.7%	-	-	-	-	-	HMMPfam_Cadherin_2
PCDH11X	27328	genome.wustl.edu	37	X	91132645	91132645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032968.3	+1	reviewed	p.S469Y	0.998	209	0%	127	37%	-	-	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	superfamily_Cadherin-like
PCDH11X	27328	genome.wustl.edu	37	X	91873471	91873471	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032968.3	+1	reviewed	p.T1192	0.012	666	0%	454	12.1%	-	-	-	-	-	NULL
NAP1L3	4675	genome.wustl.edu	37	X	92928249	92928249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004538.4	-1	reviewed	p.E19K	0.920	75	0%	40	50%	-	-	possibly_damaging(0.806)	deleterious(0.01)	deleterious(0.709)	NULL
DIAPH2	1730	genome.wustl.edu	37	X	95993627	95993627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.E70*	1.000	136	0%	61	23%	-	-	-	-	-	NULL
DIAPH2	1730	genome.wustl.edu	37	X	95993634	95993634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.P72L	0.998	148	0%	65	43.1%	-	-	unknown(0)	deleterious(0)	-	NULL
DIAPH2	1730	genome.wustl.edu	37	X	96185769	96185769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.S339Y	1.000	402	0.2%	172	35.5%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Drf_FH3
DIAPH2	1730	genome.wustl.edu	37	X	96192343	96192343	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.E401*	1.000	191	0%	92	47.8%	-	-	-	-	-	HMMPfam_Drf_FH3
DIAPH2	1730	genome.wustl.edu	37	X	96220104	96220104	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.E650*	1.000	244	0%	63	30.2%	-	-	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
PCDH19	57526	genome.wustl.edu	37	X	99551338	99551338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.I1081M	0.998	263	0%	131	29.8%	-	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	NULL
PCDH19	57526	genome.wustl.edu	37	X	99661660	99661660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.D646N	1.000	212	0%	107	31.8%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TNMD	64102	genome.wustl.edu	37	X	99854571	99854571	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022144.2	+1	reviewed	p.R271*	1.000	200	0%	152	35.5%	-	-	-	-	-	NULL
SYTL4	94121	genome.wustl.edu	37	X	99931106	99931106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129896.2	-1	reviewed	p.K645N	1.000	244	0%	186	35.5%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SYTL4	94121	genome.wustl.edu	37	X	99956979	99956979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129896.2	-1	reviewed	p.L19I	0.999	440	0%	255	42.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger
CSTF2	1478	genome.wustl.edu	37	X	100075618	100075618	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413437	+1	known	p.E4	0.004	71	0%	67	28.4%	-	-	-	-	-	NULL
NOX1	27035	genome.wustl.edu	37	X	100098952	100098952	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007052.4	-1	reviewed	p.E562*	1.000	273	0%	150	26.7%	-	-	-	-	-	NULL
ARL13A	392509	genome.wustl.edu	37	X	100241809	100241809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012990.3	+1	validated	p.K135N	0.293	339	0%	190	34.7%	-	-	benign(0.104)	tolerated(0.49)	neutral(0.019)	HMMPfam_Arf,superfamily_SSF52540
ARL13A	392509	genome.wustl.edu	37	X	100243193	100243193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012990.3	+1	validated	p.R222I	0.005	327	0%	172	30.8%	-	-	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	NULL
ARL13A	392509	genome.wustl.edu	37	X	100243409	100243409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012990.3	+1	validated	p.T263A	0.992	274	0%	153	30.1%	-	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
ARL13A	392509	genome.wustl.edu	37	X	100245654	100245654	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372953	+1	known	p.S285	0.000	231	0%	139	40.3%	-	-	-	-	-	NULL
TMEM35	59353	genome.wustl.edu	37	X	100349673	100349673	+	Missense_Mutation	SNP	G	G	A	rs186789918	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021637.2	+1	validated	p.V78I	0.998	489	0%	303	33.7%	-	-	benign(0.005)	tolerated(0.69)	neutral(0.002)	NULL
DRP2	1821	genome.wustl.edu	37	X	100496809	100496809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001939.2	+1	reviewed	p.G238W	1.000	182	0%	106	25.5%	-	-	possibly_damaging(0.558)	deleterious(0.01)	deleterious(0.596)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
DRP2	1821	genome.wustl.edu	37	X	100505981	100505981	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001939.2	+1	reviewed	p.L592	1.000	280	0%	165	31.5%	-	-	-	-	-	HMMPfam_efhand_2,superfamily_SSF47473
DRP2	1821	genome.wustl.edu	37	X	100509469	100509469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001939.2	+1	reviewed	p.R678H	1.000	247	0%	143	35%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TAF7L	54457	genome.wustl.edu	37	X	100530221	100530221	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024885.3	-1	reviewed	p.K445Q	0.895	635	0%	312	29.8%	-	-	probably_damaging(0.995)	tolerated(0.3)	deleterious(0.486)	NULL
TAF7L	54457	genome.wustl.edu	37	X	100538442	100538442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024885.3	-1	reviewed	p.S178Y	1.000	323	0%	158	32.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TAFII55_N
BTK	695	genome.wustl.edu	37	X	100609634	100609634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000061.2	-1	reviewed	p.D539N	1.000	260	0%	157	38.9%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
GLA	2717	genome.wustl.edu	37	X	100652899	100652899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000169.2	-1	reviewed	p.F396L	0.024	157	0%	86	43%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_Glycosyl hydrolase domain
ARMCX1	51309	genome.wustl.edu	37	X	100808914	100808914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016608.1	+1	reviewed	p.A334D	1.000	156	0%	112	20.5%	-	-	benign(0.424)	tolerated(0.11)	neutral(0.409)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX3	51566	genome.wustl.edu	37	X	100880988	100880988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016607.3	+1	reviewed	p.F340C	1.000	48	0%	29	31%	-	-	probably_damaging(0.978)	tolerated(0.11)	deleterious(0.692)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100911685	100911685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014782.5	-1	reviewed	p.G297D	0.562	447	0%	257	32.7%	-	-	possibly_damaging(0.949)	tolerated(0.36)	neutral(0.413)	NULL
NXF5	55998	genome.wustl.edu	37	X	101091777	101091777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372803	-1	known	p.G362*	0.585	918	0%	415	34.7%	-	-	-	-	-	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101138557	101138557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011657.2	-1	reviewed	p.R614S	0.952	456	0%	205	35.1%	-	-	benign(0.078)	deleterious(0.03)	neutral(0.370)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101139406	101139406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011657.2	-1	reviewed	p.E331D	0.001	303	0.7%	159	30.8%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
NXF2B	728343	genome.wustl.edu	37	X	101624903	101624903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099686.1	-1	provisional	p.K72E	0.000	830	0%	476	19.5%	-	-	benign(0)	tolerated(1)	-	NULL
ARMCX5	64860	genome.wustl.edu	37	X	101858705	101858705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022838.3	+1	validated	p.E546K	1.000	132	0%	42	38.1%	-	-	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	HMMPfam_DUF634,superfamily_ARM repeat
GPRASP1	9737	genome.wustl.edu	37	X	101912906	101912906	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.F1355	0.000	59	0%	44	15.9%	-	-	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
GPRASP2	114928	genome.wustl.edu	37	X	101972111	101972111	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004051.2	+1	reviewed	p.E772*	1.000	143	0%	81	40.7%	-	-	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
BHLHB9	80823	genome.wustl.edu	37	X	102004498	102004498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142524.1	+1	validated	p.P192H	0.984	158	0%	79	38%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TCEAL8	90843	genome.wustl.edu	37	X	102508566	102508566	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006684.1	-1	reviewed	p.C114*	1.000	392	0%	213	23.9%	-	-	-	-	-	NULL
TCEAL5	340543	genome.wustl.edu	37	X	102528888	102528888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012979.2	-1	validated	p.D202Y	0.023	379	0%	258	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BEX2	84707	genome.wustl.edu	37	X	102564817	102564817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032621.3	-1	reviewed	p.V30F	0.013	226	0%	143	42.7%	-	-	benign(0.066)	tolerated(0.13)	neutral(0.257)	HMMPfam_BEX
NGFRAP1	27018	genome.wustl.edu	37	X	102632525	102632525	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206915.1	+1	validated	p.R36*	0.001	421	0.2%	192	38%	-	-	-	-	-	HMMPfam_BEX
RAB40A	142684	genome.wustl.edu	37	X	102755393	102755393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080879.2	-1	reviewed	p.N98D	1.000	401	0%	238	18.1%	-	-	probably_damaging(0.972)	tolerated(0.46)	neutral(0.426)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
TCEAL1	9338	genome.wustl.edu	37	X	102885126	102885126	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006639.1	+1	reviewed	p.K94	0.870	123	0%	35	11.4%	-	-	-	-	-	HMMPfam_TFA
MORF4L2	9643	genome.wustl.edu	37	X	102931453	102931453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142418.1	-1	validated	p.S168L	1.000	369	0%	193	38.3%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_MRG
GLRA4	441509	genome.wustl.edu	37	X	102979840	102979840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024452.2	-1	validated	p.R63Q	1.000	413	0%	237	38.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
H2BFWT	158983	genome.wustl.edu	37	X	103268177	103268177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002916.3	-1	reviewed	p.S19L	0.002	122	0%	96	21.9%	-	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
H2BFM	286436	genome.wustl.edu	37	X	103294730	103294730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001723437.2	+1	model	p.Y166N	0.997	60	0%	38	21.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
ZCCHC18	644353	genome.wustl.edu	37	X	103359498	103359498	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143978.1	+1	provisional	p.P232	0.109	88	0%	38	31.6%	-	-	-	-	-	NULL
ZCCHC18	644353	genome.wustl.edu	37	X	103360143	103360143	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026694.1	+1	validated	NULL	0.000	18	0%	11	36.4%	-	-	-	-	-	-
TEX13A	56157	genome.wustl.edu	37	X	104463685	104463685	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031274.3	-1	reviewed	p.S398L	0.434	397	0%	198	31.8%	-	-	-	-	-	NULL
NRK	203447	genome.wustl.edu	37	X	105168910	105168910	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198465.2	+1	validated	p.R1067*	0.001	518	0%	216	33.8%	-	-	-	-	-	NULL
NRK	203447	genome.wustl.edu	37	X	105181435	105181435	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198465.2	+1	validated	p.V1220	1.000	172	0%	100	39%	-	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
SERPINA7	6906	genome.wustl.edu	37	X	105279210	105279210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000354.5	-1	reviewed	p.K263N	0.046	500	0%	284	39.1%	-	-	benign(0.183)	deleterious(0.01)	neutral(0.423)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA7	6906	genome.wustl.edu	37	X	105279331	105279331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000354.5	-1	reviewed	p.S223Y	0.000	681	0%	337	11.9%	-	-	possibly_damaging(0.94)	deleterious(0.03)	deleterious(0.750)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA7	6906	genome.wustl.edu	37	X	105280933	105280933	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000354.5	-1	reviewed	p.L39	0.247	289	0%	133	33.8%	-	-	-	-	-	HMMPfam_Serpin,superfamily_Prot_inh_serpin
MUM1L1	139221	genome.wustl.edu	37	X	105450669	105450669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000337685	+1	known	p.R415Q	0.997	157	0%	66	47%	-	-	probably_damaging(0.999)	tolerated(0.35)	deleterious(0.511)	superfamily_SSF63748
RNF128	79589	genome.wustl.edu	37	X	105937522	105937522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024539.3	+1	reviewed	p.R97I	1.000	215	0%	114	41.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PA,superfamily_SSF52025
RNF128	79589	genome.wustl.edu	37	X	105970443	105970443	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194463.1	+1	reviewed	p.T100	0.998	45	0%	29	48.3%	-	-	-	-	-	superfamily_Transferrin receptor ectodomain apical domain
TBC1D8B	54885	genome.wustl.edu	37	X	106070528	106070528	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017752.2	+1	validated	p.C388	0.877	131	0%	70	38.6%	-	-	-	-	-	NULL
RIPPLY1	92129	genome.wustl.edu	37	X	106144087	106144087	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138382.2	-1	validated	p.E116	0.867	653	0%	370	36.5%	-	-	-	-	-	NULL
RBM41	55285	genome.wustl.edu	37	X	106312532	106312532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018301.3	-1	validated	p.R343Q	0.983	428	0%	201	33.8%	-	-	benign(0.117)	tolerated(0.14)	neutral(0.259)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBM41	55285	genome.wustl.edu	37	X	106332056	106332056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018301.3	-1	validated	p.K179N	1.000	347	0%	148	27.7%	-	-	possibly_damaging(0.923)	tolerated(0.96)	neutral(0.372)	NULL
CXorf41	139212	genome.wustl.edu	37	X	106482156	106482156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173494.1	+1	validated	p.K145T	1.000	222	0%	108	31.5%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
MID2	11043	genome.wustl.edu	37	X	107160908	107160908	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012216.3	+1	reviewed	p.W458*	1.000	410	0%	218	35.3%	-	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
MID2	11043	genome.wustl.edu	37	X	107170265	107170265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012216.3	+1	reviewed	p.E724*	1.000	177	0%	116	36.2%	-	-	-	-	-	NULL
PSMD10	5716	genome.wustl.edu	37	X	107330981	107330981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002814.2	-1	reviewed	p.M154I	1.000	446	0%	287	24.7%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ATG4A	115201	genome.wustl.edu	37	X	107396215	107396215	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052936.2	+1	reviewed	p.L342	0.989	175	0%	77	24.7%	-	-	-	-	-	NULL
COL4A6	1288	genome.wustl.edu	37	X	107414692	107414692	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001847.2	-1	reviewed	e33-1	1.000	307	0%	163	38.7%	-	-	-	-	-	-
COL4A6	1288	genome.wustl.edu	37	X	107418386	107418386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001847.2	-1	reviewed	p.L965I	0.001	274	0%	167	39.5%	-	-	benign(0.059)	tolerated(0.29)	neutral(0.033)	NULL
COL4A5	1287	genome.wustl.edu	37	X	107924120	107924120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033380.1	+1	reviewed	p.K1341E	1.000	358	0%	155	36.1%	-	-	probably_damaging(0.984)	tolerated(0.09)	deleterious(0.727)	HMMPfam_Collagen
COL4A5	1287	genome.wustl.edu	37	X	107938584	107938584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033380.1	+1	reviewed	p.E1637K	1.000	329	0%	198	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
COL4A5	1287	genome.wustl.edu	37	X	107939546	107939546	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515658	+1	known	p.A115V	0.998	231	0.4%	106	31.1%	-	-	-	-	-	HMMSmart_SM00111
IRS4	8471	genome.wustl.edu	37	X	107978668	107978668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003604.2	-1	reviewed	p.G303C	1.000	147	0%	76	43.4%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
GUCY2F	2986	genome.wustl.edu	37	X	108625442	108625442	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001522.2	-1	reviewed	e16-1	1.000	278	0%	162	39.5%	-	-	-	-	-	-
GUCY2F	2986	genome.wustl.edu	37	X	108691353	108691353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001522.2	-1	reviewed	p.R505I	0.877	529	0%	289	32.2%	-	-	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	NULL
ACSL4	2182	genome.wustl.edu	37	X	108904760	108904760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022977.2	-1	reviewed	p.S607I	1.000	368	0%	205	13.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Acetyl-CoA synthetase-like
ACSL4	2182	genome.wustl.edu	37	X	108924304	108924304	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022977.2	-1	reviewed	p.N234T	1.000	473	0%	231	37.7%	-	-	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSL4	2182	genome.wustl.edu	37	X	108926378	108926378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022977.2	-1	reviewed	p.K113R	1.000	351	0%	207	38.2%	-	-	possibly_damaging(0.447)	tolerated(1)	neutral(0.146)	superfamily_Acetyl-CoA synthetase-like
AMMECR1	9949	genome.wustl.edu	37	X	109444255	109444255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015365.2	-1	reviewed	p.D272Y	1.000	649	0%	353	20.4%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMPfam_AMMECR1
GNG5P2	347687	genome.wustl.edu	37	X	109590113	109590113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372054	-1	known	p.A9T	1.000	68	0%	38	44.7%	-	-	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
RGAG1	57529	genome.wustl.edu	37	X	109694334	109694334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020769.2	+1	validated	p.E163D	0.481	93	0%	80	23.7%	-	-	benign(0.002)	tolerated(0.46)	neutral(0.012)	NULL
RGAG1	57529	genome.wustl.edu	37	X	109697262	109697262	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020769.2	+1	validated	p.P1139	1.000	414	0%	189	39.7%	-	-	-	-	-	NULL
CHRDL1	91851	genome.wustl.edu	37	X	109919588	109919588	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143981.1	-1	reviewed	p.S416	0.991	290	0.3%	190	37.4%	-	-	-	-	-	NULL
PAK3	5063	genome.wustl.edu	37	X	110385389	110385389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128168.1	+1	reviewed	p.H81N	1.000	441	0%	250	39.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PBD,HMMSmart_PBD
PAK3	5063	genome.wustl.edu	37	X	110437632	110437632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128168.1	+1	reviewed	p.A402T	1.000	573	0%	281	23.5%	-	-	possibly_damaging(0.519)	deleterious(0)	deleterious(0.619)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CAPN6	827	genome.wustl.edu	37	X	110491190	110491190	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014289.3	-1	reviewed	p.S505	0.174	228	0%	147	38.8%	-	-	-	-	-	superfamily_C2_CaLB
CAPN6	827	genome.wustl.edu	37	X	110496273	110496273	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014289.3	-1	reviewed	p.E157*	1.000	414	0%	190	37.4%	-	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
ALG13	79868	genome.wustl.edu	37	X	110961439	110961439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394780	+1	known	p.R396I	1.000	334	0%	136	36%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111195385	111195385	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012471.2	-1	reviewed	p.L88	0.999	185	0%	107	29.9%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
AMOT	154796	genome.wustl.edu	37	X	112033826	112033826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113490.1	-1	reviewed	p.A704D	1.000	262	0%	198	26.3%	-	-	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	NULL
AMOT	154796	genome.wustl.edu	37	X	112065997	112065997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113490.1	-1	reviewed	p.R120W	1.000	200	0%	122	17.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOC286528	286528	genome.wustl.edu	37	X	113625351	113625351	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_210501.3	+1	model	p.F75	1.000	74	0%	40	17.5%	-	-	-	-	-	HMMPfam_Ssu72
LRCH2	57631	genome.wustl.edu	37	X	114400020	114400020	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.E435*	1.000	366	0%	164	35.4%	-	-	-	-	-	NULL
LRCH2	57631	genome.wustl.edu	37	X	114404978	114404978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.K294N	1.000	233	0%	138	40.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF52058
RBMXL3	139804	genome.wustl.edu	37	X	114426821	114426821	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145346.1	+1	validated	p.R939	0.692	33	0%	23	34.8%	-	-	-	-	-	NULL
LUZP4	51213	genome.wustl.edu	37	X	114540954	114540954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016383.3	+1	validated	p.S176F	0.030	293	0%	139	14.4%	-	-	possibly_damaging(0.952)	tolerated(0.06)	deleterious(0.718)	NULL
PLS3	5358	genome.wustl.edu	37	X	114864197	114864197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136025.3	+1	reviewed	p.D140Y	1.000	399	0%	204	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,superfamily_EF-hand
LOC642357	642357	genome.wustl.edu	37	X	114937592	114937592	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016681.3	+1	model	NULL	0.994	313	0%	193	37.8%	-	-	-	-	-	-
AGTR2	186	genome.wustl.edu	37	X	115303997	115303997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000686.4	+1	reviewed	p.R155I	1.000	483	0%	238	35.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AGTR2	186	genome.wustl.edu	37	X	115304015	115304015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000686.4	+1	reviewed	p.S161Y	0.952	453	0%	229	34.1%	-	-	benign(0.013)	tolerated(0.09)	neutral(0.297)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC6A14	11254	genome.wustl.edu	37	X	115590032	115590032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007231.3	+1	reviewed	p.R614C	1.000	387	0%	192	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLHL13	90293	genome.wustl.edu	37	X	117053529	117053529	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033495.3	-1	reviewed	p.Q175	1.000	215	0%	90	41.1%	-	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
WDR44	54521	genome.wustl.edu	37	X	117527195	117527195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019045.4	+1	reviewed	p.E263K	0.985	266	0%	95	32.6%	-	-	benign(0.121)	deleterious(0.03)	neutral(0.374)	superfamily_WD40 repeat-like
WDR44	54521	genome.wustl.edu	37	X	117566843	117566843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019045.4	+1	reviewed	p.L613I	1.000	229	0%	102	37.3%	-	-	possibly_damaging(0.858)	deleterious(0.01)	deleterious(0.737)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDR44	54521	genome.wustl.edu	37	X	117576532	117576532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019045.4	+1	reviewed	p.L758S	1.000	245	0%	133	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR44	54521	genome.wustl.edu	37	X	117582888	117582888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019045.4	+1	reviewed	p.L894I	1.000	132	0%	41	41.5%	-	-	benign(0.312)	tolerated(0.35)	neutral(0.118)	superfamily_WD40 repeat-like
DOCK11	139818	genome.wustl.edu	37	X	117676740	117676740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.R52I	1.000	460	0%	204	40.2%	-	-	benign(0.005)	tolerated(0.06)	neutral(0.323)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117712527	117712527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.L477I	1.000	304	0%	140	35.7%	-	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117731476	117731476	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.P782	0.943	372	0%	184	38.6%	-	-	-	-	-	NULL
DOCK11	139818	genome.wustl.edu	37	X	117773466	117773466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.R1357Q	0.946	181	0%	84	13.1%	-	-	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	NULL
IL13RA1	3597	genome.wustl.edu	37	X	117904556	117904556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371637	+1	known	p.R110Q	0.079	68	0%	46	32.6%	-	-	unknown(0)	-	-	NULL
ZCCHC12	170261	genome.wustl.edu	37	X	117960112	117960112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173798.2	+1	provisional	p.Q302R	0.004	118	0%	77	37.7%	-	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
LONRF3	79836	genome.wustl.edu	37	X	118151516	118151516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031855.1	+1	reviewed	p.A715T	0.995	181	0%	132	35.6%	-	-	possibly_damaging(0.838)	deleterious(0.04)	deleterious(0.669)	HMMPfam_LON,HMMSmart_SM00464
LONRF3	79836	genome.wustl.edu	37	X	118151586	118151586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031855.1	+1	reviewed	p.R738K	0.394	180	0%	108	35.2%	-	-	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_LON,HMMSmart_SM00464
ENSG00000248857	0	genome.wustl.edu	37	X	118221263	118221263	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440399	-1	known	p.L717I	0.001	120	0%	60	33.3%	-	-	-	-	-	NULL
ENSG00000248857	0	genome.wustl.edu	37	X	118221581	118221581	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440399	-1	known	p.L611I	0.092	141	0%	70	35.7%	-	-	-	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118222992	118222992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.S734Y	0.000	47	0%	26	34.6%	-	-	benign(0.038)	tolerated(0.08)	neutral(0.302)	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118223103	118223103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.P697H	0.175	129	0%	85	43.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118223628	118223628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.S522Y	0.000	922	0.1%	533	37.5%	-	-	possibly_damaging(0.85)	-	-	NULL
PGRMC1	10857	genome.wustl.edu	37	X	118377182	118377182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006667.3	+1	reviewed	p.E185*	1.000	349	0%	160	38.8%	-	-	-	-	-	NULL
SLC25A43	203427	genome.wustl.edu	37	X	118586877	118586877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145305.2	+1	reviewed	p.R292I	1.000	228	0%	118	34.7%	-	-	possibly_damaging(0.637)	tolerated(0.18)	neutral(0.279)	HMMPfam_Mito_carr
NKRF	55922	genome.wustl.edu	37	X	118723341	118723341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017544.3	-1	reviewed	p.E683K	1.000	214	0%	137	36.5%	-	-	probably_damaging(0.975)	deleterious(0.05)	deleterious(0.762)	NULL
NKRF	55922	genome.wustl.edu	37	X	118724939	118724939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017544.3	-1	reviewed	p.S150Y	0.302	426	0%	254	35.4%	-	-	benign(0.11)	deleterious(0.04)	neutral(0.357)	NULL
NKRF	55922	genome.wustl.edu	37	X	118726448	118726448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017544.3	-1	reviewed	p.L5I	0.997	413	0%	231	26.8%	-	-	possibly_damaging(0.858)	tolerated(0.3)	neutral(0.360)	NULL
SEPT6	23157	genome.wustl.edu	37	X	118786967	118786967	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015129.5	-1	reviewed	p.F126	0.985	406	0%	253	36%	-	-	-	-	-	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
RPL39	6170	genome.wustl.edu	37	X	118923897	118923897	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422326	-1	known	p.S75P	1.000	375	0%	209	30.6%	-	-	-	-	-	HMMPfam_Ribosomal_L39,superfamily_Ribosomal protein L39e
RNF113A	7737	genome.wustl.edu	37	X	119005117	119005117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006978.2	-1	reviewed	p.R154W	1.000	423	0%	254	36.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NKAP	79576	genome.wustl.edu	37	X	119066164	119066164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024528.3	-1	reviewed	p.K251N	1.000	332	0%	144	31.9%	-	-	unknown(0)	tolerated(0.48)	-	NULL
NKAP	79576	genome.wustl.edu	37	X	119070328	119070328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024528.3	-1	reviewed	p.S202L	1.000	670	0%	234	29.1%	-	-	unknown(0)	deleterious(0.01)	-	NULL
NKAP	79576	genome.wustl.edu	37	X	119070595	119070595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024528.3	-1	reviewed	p.T173N	0.718	158	0%	120	40%	-	-	unknown(0)	deleterious(0.04)	-	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119387720	119387720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006777.3	+1	reviewed	p.Q150H	0.543	143	0%	66	42.4%	-	-	possibly_damaging(0.612)	tolerated(0.05)	deleterious(0.557)	NULL
LAMP2	3920	genome.wustl.edu	37	X	119565201	119565201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002294.2	-1	reviewed	p.H404N	0.345	223	0%	111	33.3%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Lamp,PatternScan_LAMP_2
CUL4B	8450	genome.wustl.edu	37	X	119664037	119664037	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003588.3	-1	reviewed	p.R856*	1.000	612	0%	319	35.1%	-	-	-	-	-	"HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"
CUL4B	8450	genome.wustl.edu	37	X	119670796	119670796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003588.3	-1	reviewed	p.H696Y	1.000	313	0%	171	13.5%	-	-	benign(0.035)	deleterious(0.03)	neutral(0.366)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
CUL4B	8450	genome.wustl.edu	37	X	119679338	119679338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003588.3	-1	reviewed	p.R312I	1.000	214	0%	124	16.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin,superfamily_Cullin repeat
CUL4B	8450	genome.wustl.edu	37	X	119680992	119680992	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003588.3	-1	reviewed	p.E277*	1.000	284	0%	162	38.9%	-	-	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
CT47B1	643311	genome.wustl.edu	37	X	120009411	120009411	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145718.1	-1	validated	p.S38	0.000	16	0%	20	30%	-	-	-	-	-	NULL
GRIA3	2892	genome.wustl.edu	37	X	122319705	122319705	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000828.4	+1	reviewed	p.Q44*	1.000	282	0%	182	14.8%	-	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
THOC2	57187	genome.wustl.edu	37	X	122747527	122747527	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441692	-1	known	p.R289Q	1.000	866	0%	439	35.8%	-	-	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122765608	122765608	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081550.1	-1	validated	p.C804	1.000	256	0%	111	32.4%	-	-	-	-	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123191727	123191727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.R439H	1.000	296	0%	127	47.2%	-	-	benign(0)	tolerated(0.58)	neutral(0.005)	superfamily_ARM-type_fold
STAG2	10735	genome.wustl.edu	37	X	123210307	123210307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.K887E	1.000	186	0%	109	30.3%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_ARM-type_fold
ODZ1	10178	genome.wustl.edu	37	X	123775652	123775652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.D689G	1.000	216	0%	149	32.9%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	PatternScan_EGF_1
ACTRT1	139741	genome.wustl.edu	37	X	127185068	127185068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138289.3	-1	reviewed	p.R373I	1.000	246	0%	119	27.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMARCA1	6594	genome.wustl.edu	37	X	128633744	128633744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.K414N	1.000	408	0%	161	41%	-	-	possibly_damaging(0.919)	tolerated(1)	neutral(0.369)	HMMPfam_SNF2_N
OCRL	4952	genome.wustl.edu	37	X	128696421	128696421	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000276.3	+1	reviewed	p.R334*	0.002	761	0%	350	37.1%	-	-	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
OCRL	4952	genome.wustl.edu	37	X	128721048	128721048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000276.3	+1	reviewed	p.E737K	1.000	341	0%	149	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SASH3	54440	genome.wustl.edu	37	X	128927026	128927026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018990.3	+1	reviewed	p.R288Q	1.000	108	0%	78	39.7%	-	-	possibly_damaging(0.478)	tolerated(0.2)	neutral(0.207)	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
BCORL1	63035	genome.wustl.edu	37	X	129148791	129148791	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441294	+1	known	p.L117F	0.994	133	0.8%	82	40.2%	-	-	-	-	-	NULL
BCORL1	63035	genome.wustl.edu	37	X	129149156	129149156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.S803Y	0.061	96	0%	44	36.4%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129156916	129156916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.P1218S	1.000	392	0%	248	28.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129162690	129162690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.N1387D	0.461	247	0%	117	35%	-	-	benign(0.02)	tolerated(0.25)	neutral(0.038)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129184761	129184761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.S1563F	1.000	647	0%	325	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF280C	55609	genome.wustl.edu	37	X	129362962	129362962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017666.4	-1	validated	p.H379R	0.979	756	0.3%	393	33.6%	-	-	benign(0.055)	tolerated(0.21)	neutral(0.048)	NULL
ARHGAP36	158763	genome.wustl.edu	37	X	130218322	130218322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144967.3	+1	validated	p.P230L	0.995	210	0%	111	31.5%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_GTPase activation domain GAP
IGSF1	3547	genome.wustl.edu	37	X	130408573	130408573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001555.4	-1	reviewed	p.G1251W	1.000	239	0%	173	19.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130409671	130409671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001555.4	-1	reviewed	p.L989I	1.000	190	0%	128	40.6%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
IGSF1	3547	genome.wustl.edu	37	X	130413267	130413267	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001555.4	-1	reviewed	p.I565	0.377	194	0%	119	31.1%	-	-	-	-	-	NULL
MST4	51765	genome.wustl.edu	37	X	131203645	131203645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016542.3	+1	reviewed	p.S246Y	1.000	299	0%	126	31.7%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FRMD7	90167	genome.wustl.edu	37	X	131212391	131212391	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194277.2	-1	reviewed	p.E552*	0.934	424	0%	204	35.8%	-	-	-	-	-	NULL
MBNL3	55796	genome.wustl.edu	37	X	131526331	131526331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018388.3	-1	reviewed	p.A125V	0.996	442	0%	184	22.8%	-	-	benign(0.097)	tolerated(0.14)	neutral(0.257)	NULL
USP26	83844	genome.wustl.edu	37	X	132159906	132159906	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031907.1	-1	reviewed	p.Q781	0.001	332	0%	167	42.5%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP26	83844	genome.wustl.edu	37	X	132161036	132161036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031907.1	-1	reviewed	p.W405R	0.000	81	0%	34	47.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_Cysteine proteinases
GPC4	2239	genome.wustl.edu	37	X	132437080	132437080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001448.2	-1	reviewed	p.E496K	1.000	221	0%	128	27.3%	-	-	possibly_damaging(0.731)	deleterious(0.04)	deleterious(0.616)	HMMPfam_Glypican
GPC4	2239	genome.wustl.edu	37	X	132458412	132458412	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001448.2	-1	reviewed	p.E158*	1.000	144	0%	69	39.1%	-	-	-	-	-	HMMPfam_Glypican
LOC100288762	100288762	genome.wustl.edu	37	X	132670224	132670224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343849.1	+1	model	p.V3I	0.000	404	0%	277	28.2%	-	-	-	-	-	NULL
LOC100288762	100288762	genome.wustl.edu	37	X	132730669	132730669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343849.1	+1	model	p.F104L	0.000	335	0%	224	41.1%	-	-	-	-	-	NULL
GPC3	2719	genome.wustl.edu	37	X	132887945	132887945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004484.3	-1	reviewed	p.R199Q	1.000	921	0.3%	551	36.8%	-	-	benign(0.324)	tolerated(0.08)	neutral(0.401)	HMMPfam_Glypican
GPC3	2719	genome.wustl.edu	37	X	132888183	132888183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004484.3	-1	reviewed	p.R120C	1.000	442	0%	266	34.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Glypican
CCDC160	347475	genome.wustl.edu	37	X	133379094	133379094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101357.1	+1	provisional	p.K88N	0.018	91	0%	26	30.8%	-	-	benign(0.052)	tolerated(0.31)	neutral(0.030)	NULL
PHF6	84295	genome.wustl.edu	37	X	133527960	133527960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015877.1	+1	reviewed	p.K132N	1.000	264	0%	135	36.3%	-	-	possibly_damaging(0.718)	tolerated(0.17)	neutral(0.319)	HMMSmart_SM00249
HPRT1	3251	genome.wustl.edu	37	X	133627595	133627595	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000194.2	+1	reviewed	p.N154H	1.000	334	0%	179	33.5%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_Pribosyltran,superfamily_PRTase-like
HPRT1	3251	genome.wustl.edu	37	X	133627615	133627615	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000194.2	+1	reviewed	p.V160	0.366	317	0%	175	34.9%	-	-	-	-	-	HMMPfam_Pribosyltran,superfamily_PRTase-like
FAM122C	159091	genome.wustl.edu	37	X	133948872	133948872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138819.3	+1	validated	p.R61H	0.000	285	0%	116	31%	-	-	benign(0.001)	tolerated(1)	-	NULL
FAM122C	159091	genome.wustl.edu	37	X	133988190	133988190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370784	+1	known	p.S171L	0.015	407	0%	257	38.9%	-	-	unknown(0)	-	-	NULL
MOSPD1	56180	genome.wustl.edu	37	X	134030900	134030900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019556.1	-1	provisional	p.R132I	1.000	361	0%	209	24.9%	-	-	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	NULL
LOC100128949	100128949	genome.wustl.edu	37	X	134155849	134155849	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001720075.2	+1	model	p.L46	0.003	206	0%	112	39.3%	-	-	benign(0.012)	-	-	NULL
FAM127C	441518	genome.wustl.edu	37	X	134156316	134156316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078173.1	-1	validated	p.F58L	0.294	167	0%	118	43.2%	-	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
LOC644717	644717	genome.wustl.edu	37	X	134774258	134774258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343850.1	-1	model	p.L820M	0.007	26	0%	17	23.5%	-	-	-	-	-	NULL
SAGE1	55511	genome.wustl.edu	37	X	134988294	134988294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018666.2	+1	reviewed	p.P189H	0.000	184	0%	230	34.3%	-	-	probably_damaging(0.976)	tolerated(0.06)	deleterious(0.740)	NULL
SAGE1	55511	genome.wustl.edu	37	X	134989171	134989171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018666.2	+1	reviewed	p.G275W	0.003	262	0%	144	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SAGE1	55511	genome.wustl.edu	37	X	134994054	134994054	+	Missense_Mutation	SNP	G	G	T	rs4829584	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018666.2	+1	reviewed	p.K821N	0.001	114	0%	57	38.6%	-	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
FHL1	2273	genome.wustl.edu	37	X	135289252	135289252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001449.4	+1	reviewed	p.E78D	1.000	107	0%	48	43.8%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
GPR112	139378	genome.wustl.edu	37	X	135405443	135405443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.E193K	0.983	301	0.3%	139	27.3%	-	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	superfamily_ConA_like_lec_gl
GPR112	139378	genome.wustl.edu	37	X	135428746	135428746	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.I961L	0.000	144	0%	86	38.4%	-	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	NULL
GPR112	139378	genome.wustl.edu	37	X	135429783	135429783	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.K1306N	0.000	109	0%	91	38.5%	-	-	benign(0.017)	tolerated(0.14)	neutral(0.250)	NULL
GPR112	139378	genome.wustl.edu	37	X	135431011	135431011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.G1716S	0.000	289	0%	130	38.5%	-	-	possibly_damaging(0.867)	tolerated(0.35)	neutral(0.357)	NULL
GPR112	139378	genome.wustl.edu	37	X	135431692	135431692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.S1943P	0.000	252	0%	183	33.3%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
GPR112	139378	genome.wustl.edu	37	X	135441574	135441574	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.T2368	0.000	325	0%	183	33.3%	-	-	-	-	-	NULL
BRS3	680	genome.wustl.edu	37	X	135574330	135574330	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001727.1	+1	validated	p.W332*	1.000	453	0%	233	39.1%	-	-	-	-	-	superfamily_SSF81321
HTATSF1	27336	genome.wustl.edu	37	X	135582834	135582834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014500.4	+1	reviewed	p.D143Y	1.000	187	0%	112	12.5%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
HTATSF1	27336	genome.wustl.edu	37	X	135593792	135593792	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014500.4	+1	reviewed	p.E630*	0.181	331	0%	126	34.9%	-	-	-	-	-	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135789114	135789114	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004840.2	-1	reviewed	p.A333	1.000	349	0%	230	32.6%	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
GPR101	83550	genome.wustl.edu	37	X	136112327	136112327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054021.1	-1	validated	p.D503N	0.106	227	0%	116	29.3%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
GPR101	83550	genome.wustl.edu	37	X	136112616	136112616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054021.1	-1	validated	p.F406L	1.000	304	0%	178	36.5%	-	-	benign(0.297)	tolerated(0.09)	neutral(0.388)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR101	83550	genome.wustl.edu	37	X	136113832	136113832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054021.1	-1	validated	p.M1T	0.027	61	0%	44	38.6%	-	-	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	NULL
FGF13	2258	genome.wustl.edu	37	X	137821411	137821411	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033642.2	-1	reviewed	p.S7	0.477	402	0%	188	23.4%	-	-	-	-	-	NULL
F9	2158	genome.wustl.edu	37	X	138633241	138633241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000133.3	+1	reviewed	p.V181F	0.998	343	0%	169	38.5%	-	-	possibly_damaging(0.543)	tolerated(0.22)	neutral(0.226)	superfamily_EGF/Laminin
MCF2	4168	genome.wustl.edu	37	X	138678782	138678782	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099855.1	-1	reviewed	p.F795V	0.995	309	0%	195	16.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
MCF2	4168	genome.wustl.edu	37	X	138698530	138698530	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099855.1	-1	reviewed	p.N428H	1.000	79	0%	46	54.3%	-	-	possibly_damaging(0.86)	tolerated(0.07)	deleterious(0.651)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138825742	138825742	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433868	-1	known	p.L38F	1.000	177	0%	60	41.7%	-	-	-	-	-	NULL
ATP11C	286410	genome.wustl.edu	37	X	138844171	138844171	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.G866	0.998	297	0%	141	29.1%	-	-	-	-	-	NULL
ATP11C	286410	genome.wustl.edu	37	X	138864759	138864759	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422228	-1	known	p.S188L	1.000	342	0.9%	167	26.9%	-	-	-	-	-	superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP11C	286410	genome.wustl.edu	37	X	138880851	138880851	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.T257	0.998	238	0%	141	27.7%	-	-	-	-	-	superfamily_Calcium ATPase transduction domain A
SOX3	6658	genome.wustl.edu	37	X	139586881	139586881	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005634.2	-1	reviewed	p.G115	1.000	33	0%	19	21.1%	-	-	-	-	-	NULL
CDR1	1038	genome.wustl.edu	37	X	139866106	139866106	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004065.2	-1	reviewed	p.S142	0.020	423	0%	278	10.8%	-	-	-	-	-	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140969309	140969309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138702.1	+1	reviewed	p.M212I	0.000	362	0.3%	202	34.2%	-	-	unknown(0)	tolerated(0.1)	-	HMMPfam_MAGE
MAGEC3	139081	genome.wustl.edu	37	X	140984750	140984750	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138702.1	+1	reviewed	p.I402	0.023	287	0%	150	35.3%	-	-	-	-	-	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140985179	140985179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138702.1	+1	reviewed	p.K545N	0.000	308	0%	206	39.3%	-	-	possibly_damaging(0.9)	deleterious(0.01)	deleterious(0.762)	HMMPfam_MAGE
MAGEC1	9947	genome.wustl.edu	37	X	140995520	140995520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005462.4	+1	reviewed	p.R777I	0.001	217	0%	133	34.6%	-	-	unknown(0)	tolerated(0.07)	-	NULL
LOC392555	392555	genome.wustl.edu	37	X	141261179	141261179	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343852.1	-1	model	p.E250*	0.003	129	0%	85	12.9%	-	-	-	-	-	HMMPfam_MAGE
SPANXN3	139067	genome.wustl.edu	37	X	142596720	142596720	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009609.2	-1	validated	p.S117*	0.000	466	0%	325	32.9%	-	-	-	-	-	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142718685	142718685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173078.3	-1	reviewed	p.L80F	0.985	48	0%	29	44.8%	-	-	possibly_damaging(0.904)	deleterious(0.03)	deleterious(0.723)	superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144904135	144904135	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.I64	1.000	298	0%	185	34.6%	-	-	-	-	-	HMMSmart_SM00013,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144905741	144905741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.R600W	0.001	82	0%	52	40.4%	-	-	benign(0.251)	tolerated(0.12)	neutral(0.286)	NULL
MIR890	100126303	genome.wustl.edu	37	X	145075834	145075834	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401256	-1	known	NULL	0.000	145	0%	72	30.6%	-	-	-	-	-	-
MIR513A1	574509	genome.wustl.edu	37	X	146295065	146295065	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385138	-1	known	NULL	0.049	555	0%	363	33.1%	-	-	-	-	-	-
FMR1	2332	genome.wustl.edu	37	X	147026530	147026530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002024.5	+1	reviewed	p.G538E	0.969	486	0%	184	38%	-	-	benign(0.159)	deleterious(0)	neutral(0.459)	NULL
AFF2	2334	genome.wustl.edu	37	X	147743515	147743515	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002025.3	+1	reviewed	p.S89	0.998	225	0%	95	36.8%	-	-	-	-	-	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	147743574	147743574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002025.3	+1	reviewed	p.K109T	1.000	387	0%	122	41.8%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148062317	148062317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002025.3	+1	reviewed	p.G1207V	1.000	235	0%	115	36.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_AF-4
MAGEA8	4107	genome.wustl.edu	37	X	149013071	149013071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005364.4	+1	reviewed	p.R9C	0.000	67	0%	45	17.8%	-	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
MAMLD1	10046	genome.wustl.edu	37	X	149638881	149638881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005491.3	+1	reviewed	p.P346S	0.980	78	0%	51	33.3%	-	-	possibly_damaging(0.796)	tolerated(0.06)	deleterious(0.621)	NULL
MTM1	4534	genome.wustl.edu	37	X	149767149	149767149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.T77M	1.000	237	0%	113	45.1%	-	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMPfam_GRAM,HMMSmart_GRAM,superfamily_SSF50729
MTM1	4534	genome.wustl.edu	37	X	149809878	149809878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.R222Q	0.983	298	0%	175	48%	-	-	possibly_damaging(0.823)	tolerated(0.07)	deleterious(0.631)	HMMPfam_Myotub-related,superfamily_SSF52799
MTM1	4534	genome.wustl.edu	37	X	149832078	149832078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.Q547R	1.000	219	0%	75	21.3%	-	-	benign(0.008)	tolerated(0.35)	neutral(0.021)	NULL
MTMR1	8776	genome.wustl.edu	37	X	149899995	149899995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003828.2	+1	reviewed	p.F257L	0.727	299	0%	163	21.5%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
HMGB3	3149	genome.wustl.edu	37	X	150154642	150154642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005342.2	+1	validated	p.P90H	1.000	153	0%	67	47.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_HMG-box
PASD1	139135	genome.wustl.edu	37	X	150840091	150840091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173493.2	+1	reviewed	p.S426Y	0.000	222	0.5%	131	20.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PASD1	139135	genome.wustl.edu	37	X	150840202	150840202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173493.2	+1	reviewed	p.S463F	0.000	257	0%	169	37.9%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
PASD1	139135	genome.wustl.edu	37	X	150842554	150842554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173493.2	+1	reviewed	p.R691W	0.000	219	0%	109	36.7%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
PRRG3	79057	genome.wustl.edu	37	X	150873795	150873795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448324	+1	known	p.V67M	0.000	175	0%	79	31.6%	-	-	benign(0.073)	-	-	NULL
CNGA2	1260	genome.wustl.edu	37	X	150912171	150912171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005140.1	+1	reviewed	p.R399Q	1.000	192	0%	154	35.1%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_cNMP_binding
GABRE	2564	genome.wustl.edu	37	X	151138847	151138847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004961.3	-1	reviewed	p.K28N	0.000	152	0%	99	32.3%	-	-	benign(0.02)	deleterious(0.03)	neutral(0.365)	NULL
MAGEA10	4109	genome.wustl.edu	37	X	151304047	151304047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011543.1	-1	reviewed	p.L16I	0.000	118	0%	71	31%	-	-	probably_damaging(0.963)	tolerated(0.4)	neutral(0.422)	NULL
GABRA3	2556	genome.wustl.edu	37	X	151376472	151376472	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000808.3	-1	reviewed	e6+1	1.000	233	0%	152	36.8%	-	-	-	-	-	-
GABRQ	55879	genome.wustl.edu	37	X	151806758	151806758	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018558.2	+1	reviewed	p.F34	0.000	146	0%	111	35.1%	-	-	-	-	-	NULL
GABRQ	55879	genome.wustl.edu	37	X	151819993	151819993	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018558.2	+1	reviewed	p.L302	0.258	514	0%	288	13.5%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
MAGEA12	4111	genome.wustl.edu	37	X	151900573	151900573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005367.5	-1	reviewed	p.N76K	0.002	339	0%	194	37.1%	-	-	benign(0.062)	tolerated(0.92)	neutral(0.004)	NULL
MAGEA3	4102	genome.wustl.edu	37	X	151935750	151935750	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005362.3	-1	reviewed	p.V139	0.000	477	0%	286	36%	-	-	-	-	-	HMMPfam_MAGE
CETN2	1069	genome.wustl.edu	37	X	151998196	151998196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004344.1	-1	reviewed	p.D38Y	1.000	452	0%	292	37.3%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
NSDHL	50814	genome.wustl.edu	37	X	152031206	152031206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129765.1	+1	reviewed	p.D161Y	1.000	500	0%	219	32.9%	-	-	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
ZNF185	7739	genome.wustl.edu	37	X	152083292	152083292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007150.3	+1	reviewed	p.V25I	0.891	117	0%	55	41.8%	-	-	benign(0.287)	tolerated(0.6)	neutral(0.093)	NULL
ZNF185	7739	genome.wustl.edu	37	X	152085894	152085894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007150.3	+1	reviewed	p.G110E	0.219	142	0%	99	31.3%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
ZNF185	7739	genome.wustl.edu	37	X	152113955	152113955	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426821	+1	known	p.E237K	0.000	133	0%	67	28.4%	-	-	-	-	-	NULL
PNMA5	114824	genome.wustl.edu	37	X	152159384	152159384	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103150.1	-1	validated	p.P253	0.000	65	0%	21	38.1%	-	-	-	-	-	NULL
PNMA5	114824	genome.wustl.edu	37	X	152159441	152159441	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103150.1	-1	validated	p.I234	0.313	93	0%	50	48%	-	-	-	-	-	NULL
ZFP92	139735	genome.wustl.edu	37	X	152686126	152686126	+	Silent	SNP	G	G	A	rs140854514	by1000genomes	TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136273.1	+1	validated	p.S97	0.000	123	0%	66	33.3%	-	-	-	-	-	NULL
ZFP92	139735	genome.wustl.edu	37	X	152686375	152686375	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136273.1	+1	validated	p.Y180	0.001	87	0%	69	37.7%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
HAUS7	55559	genome.wustl.edu	37	X	152721962	152721962	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017518.6	-1	reviewed	p.D208	0.000	141	0%	86	31.4%	-	-	-	-	-	NULL
HAUS7	55559	genome.wustl.edu	37	X	152722093	152722093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017518.6	-1	reviewed	p.E165K	0.000	139	0%	71	32.4%	-	-	probably_damaging(0.973)	tolerated(0.34)	neutral(0.438)	NULL
ATP2B3	492	genome.wustl.edu	37	X	152815061	152815061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001344.2	+1	reviewed	p.R482H	1.000	258	0.4%	168	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
FAM58A	92002	genome.wustl.edu	37	X	152860121	152860121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000276345	-1	known	p.G103S	0.461	83	0%	49	16.3%	-	-	benign(0)	tolerated(1)	-	HMMSmart_CYCLIN,superfamily_Cyclin_like
DUSP9	1852	genome.wustl.edu	37	X	152915045	152915045	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433144	+1	known	p.S215L	0.201	108	0%	72	26.4%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
PNCK	139728	genome.wustl.edu	37	X	152936826	152936826	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370142	-1	known	p.L199	0.832	81	0%	59	35.6%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PNCK	139728	genome.wustl.edu	37	X	152938464	152938464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039582.3	-1	validated	p.S106L	1.000	39	0%	39	41%	-	-	benign(0.073)	deleterious(0.02)	neutral(0.388)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SLC6A8	6535	genome.wustl.edu	37	X	152956836	152956836	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005629.3	+1	reviewed	p.Y158D	1.000	237	0%	142	40.8%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_2
ABCD1	215	genome.wustl.edu	37	X	152991459	152991459	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000033.3	+1	reviewed	p.I246	0.555	31	0%	29	37.9%	-	-	-	-	-	HMMPfam_ABC_membrane_2
PLXNB3	5365	genome.wustl.edu	37	X	153036324	153036324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005393.2	+1	reviewed	p.L708I	0.996	133	0%	92	35.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
IDH3G	3421	genome.wustl.edu	37	X	153051811	153051811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004135.2	-1	reviewed	p.K340E	1.000	295	0%	191	35.1%	-	-	benign(0.183)	tolerated(0.14)	neutral(0.267)	HMMPfam_Iso_dh,superfamily_SSF53659
IDH3G	3421	genome.wustl.edu	37	X	153056250	153056250	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427365	-1	known	e0+1	0.004	166	0%	104	26%	-	-	-	-	-	-
SSR4	6748	genome.wustl.edu	37	X	153063205	153063205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006280.1	+1	reviewed	p.S96N	0.163	72	0%	36	25%	-	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMPfam_TRAP-delta
PDZD4	57595	genome.wustl.edu	37	X	153069193	153069193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032512.2	-1	provisional	p.R642Q	1.000	35	0%	36	52.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
L1CAM	3897	genome.wustl.edu	37	X	153132569	153132569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.K716N	1.000	396	0%	298	38.6%	-	-	possibly_damaging(0.894)	deleterious(0.03)	deleterious(0.716)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
L1CAM	3897	genome.wustl.edu	37	X	153134336	153134336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.L447M	1.000	212	0%	123	35%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
L1CAM	3897	genome.wustl.edu	37	X	153135571	153135571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.R311C	0.930	177	0%	148	37.8%	-	-	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ARHGAP4	393	genome.wustl.edu	37	X	153176611	153176611	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442172	-1	known	p.R40K	1.000	182	0%	94	31.9%	-	-	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP4	393	genome.wustl.edu	37	X	153184317	153184317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001666.4	-1	reviewed	p.R334H	0.985	121	0%	48	33.3%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153219912	153219912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005334.2	-1	reviewed	p.A1313V	0.003	495	0%	316	37.3%	-	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153220513	153220513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005334.2	-1	reviewed	p.E1113K	1.000	224	0.9%	162	38.9%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
IRAK1	3654	genome.wustl.edu	37	X	153278594	153278594	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437278	-1	known	p.W174*	0.000	21	0%	11	45.5%	-	-	-	-	-	NULL
IRAK1	3654	genome.wustl.edu	37	X	153283517	153283517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001569.3	-1	reviewed	p.F283L	0.046	133	0%	85	14.1%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FLNA	2316	genome.wustl.edu	37	X	153590879	153590879	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.F824	0.996	95	0%	74	41.9%	-	-	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153591041	153591041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.E798K	0.998	118	0%	68	32.4%	-	-	possibly_damaging(0.81)	deleterious(0.02)	deleterious(0.688)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
EMD	2010	genome.wustl.edu	37	X	153608700	153608700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000117.2	+1	reviewed	p.F124L	0.000	47	0%	22	31.8%	-	-	benign(0)	tolerated(1)	-	NULL
TAZ	6901	genome.wustl.edu	37	X	153648064	153648064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000116.3	+1	reviewed	p.E188K	0.998	236	0%	112	20.5%	-	-	benign(0.424)	deleterious(0.02)	deleterious(0.520)	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
ATP6AP1	537	genome.wustl.edu	37	X	153660174	153660174	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001183.4	+1	reviewed	e3-2	0.997	180	0%	103	36.9%	-	-	-	-	-	-
PLXNA3	55558	genome.wustl.edu	37	X	153693831	153693831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017514.3	+1	reviewed	p.D770G	0.994	246	0%	147	37.4%	-	-	possibly_damaging(0.692)	tolerated(0.54)	neutral(0.255)	NULL
IKBKG	8517	genome.wustl.edu	37	X	153780395	153780395	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099856.2	+1	reviewed	p.E128*	1.000	73	0%	39	53.8%	-	-	-	-	-	NULL
CTAG2	30848	genome.wustl.edu	37	X	153880617	153880617	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020994.3	-1	reviewed	p.P186	0.001	292	0.3%	195	30.3%	-	-	-	-	-	NULL
DKC1	1736	genome.wustl.edu	37	X	153994649	153994649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001363.3	+1	reviewed	p.R141H	0.991	208	0%	117	31.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TruB_N,superfamily_PsdUridine_synth_cat_dom
SNORA56	677835	genome.wustl.edu	37	X	154003350	154003350	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002984.1	+1	reviewed	NULL	0.000	58	0%	35	31.4%	-	-	-	-	-	-
F8	2157	genome.wustl.edu	37	X	154185319	154185319	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.F555	0.759	519	0.2%	293	38.9%	-	-	-	-	-	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154227852	154227852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.S56Y	0.032	396	0%	195	33.3%	-	-	possibly_damaging(0.508)	deleterious(0.01)	deleterious(0.576)	superfamily_Cupredoxins
BRCC3	79184	genome.wustl.edu	37	X	154307013	154307013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399026	+1	known	p.F88L	0.000	342	0%	185	41.6%	-	-	unknown(0)	deleterious(0)	-	NULL
BRCC3	79184	genome.wustl.edu	37	X	154348405	154348405	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024332.2	+1	reviewed	p.E311*	1.000	214	0%	85	38.8%	-	-	-	-	-	NULL
CLIC2	1193	genome.wustl.edu	37	X	154509325	154509325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001289.4	-1	reviewed	p.S109Y	0.999	363	0%	176	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glutathione S-transferase (GST) C-terminal domain
SPRY3	10251	genome.wustl.edu	37	X	155004200	155004200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005840.1	+1	validated	p.A223T	0.999	351	0%	250	37.6%	-	-	benign(0.036)	tolerated(0.15)	neutral(0.243)	HMMPfam_Sprouty
IL9R	3581	genome.wustl.edu	37	X	155233375	155233375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UV-01A-11D-A10B-09	TCGA-BS-A0UV-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369423	+1	known	p.S141Y	0.005	209	0%	202	19.3%	-	-	possibly_damaging(0.722)	deleterious(0.03)	deleterious(0.627)	NULL
