Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
HP1BP3	50809	genome.wustl.edu	37	1	21092012	21092012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016287.3	-1	validated	p.A250T	0.033	259	0%	190	30.5%	6	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
FUCA1	2517	genome.wustl.edu	37	1	24180899	24180899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000147.4	-1	reviewed	p.R307H	0.992	131	0.8%	100	38%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Alpha_L_fucos,superfamily_Glyco_hydro_cat
LRRC7	57554	genome.wustl.edu	37	1	70478708	70478708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.E358K	1.000	276	0%	322	44.1%	0	-	probably_damaging(0.993)	tolerated(0.09)	deleterious(0.746)	superfamily_RNI-like
SRGAP2	23380	genome.wustl.edu	37	1	206626602	206626602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000367123	+1	known	p.E51Q	1.000	161	0%	103	19.4%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
PTPN14	5784	genome.wustl.edu	37	1	214557614	214557614	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.P528	0.330	163	0%	65	21.5%	1	0%	-	-	-	NULL
CAPN8	388743	genome.wustl.edu	37	1	223718206	223718206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143962.1	-1	validated	p.Y516H	0.990	139	0%	125	23.2%	10	80%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_EF-hand
OBSCN	84033	genome.wustl.edu	37	1	228461557	228461557	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.L1742V	0.001	59	0%	27	25.9%	0	-	probably_damaging(0.977)	tolerated(1)	neutral(0.419)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228527680	228527680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.D5765N	1.000	126	0%	56	19.6%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
RYR2	6262	genome.wustl.edu	37	1	237729915	237729915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.F1088C	1.000	177	0%	109	21.1%	0	-	probably_damaging(0.995)	-	-	NULL
PTCD3	55037	genome.wustl.edu	37	2	86350884	86350884	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017952.5	+1	validated	p.R239*	0.990	399	0%	627	16.6%	1	0%	-	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109379931	109379931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.G979V	1.000	272	0%	262	23.3%	2	50%	unknown(0)	-	-	NULL
ENSG00000163075	0	genome.wustl.edu	37	2	120388525	120388525	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413057	+1	known	p.Q222L	0.000	173	0%	162	24.1%	0	-	-	-	-	NULL
MYO3B	140469	genome.wustl.edu	37	2	171319906	171319906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.P920L	1.000	232	0%	241	40.2%	0	-	possibly_damaging(0.897)	tolerated(0.1)	deleterious(0.640)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TTN	7273	genome.wustl.edu	37	2	179436010	179436010	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R22380T	1.000	238	0%	235	19.6%	0	-	possibly_damaging(0.794)	-	-	HMMPfam_fn3,HMMSmart_SM00060
STAT4	6775	genome.wustl.edu	37	2	191900938	191900938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003151.2	-1	reviewed	p.R508S	1.000	313	0%	324	10.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind
PIKFYVE	200576	genome.wustl.edu	37	2	209136257	209136257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.D5G	1.000	470	0%	369	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266838	41266838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.K170M	1.000	132	0%	106	21.7%	9	0%	benign(0.036)	deleterious(0)	neutral(0.447)	HMMSmart_SM00185,superfamily_ARM repeat
NKTR	4820	genome.wustl.edu	37	3	42678614	42678614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005385.3	+1	reviewed	p.R473Q	0.002	73	0%	133	32.3%	0	-	unknown(0)	deleterious(0.01)	-	NULL
ANO10	55129	genome.wustl.edu	37	3	43607160	43607160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018075.3	-1	validated	p.M426I	1.000	180	0%	305	32.5%	3	0%	possibly_damaging(0.712)	tolerated(0.28)	neutral(0.289)	NULL
USP4	7375	genome.wustl.edu	37	3	49323660	49323660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003363.3	-1	validated	p.E691K	0.000	769	0%	1180	14.1%	35	8.5%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_UCH,superfamily_Cysteine proteinases
IQCF1	132141	genome.wustl.edu	37	3	51929042	51929042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152397.2	-1	validated	p.R161H	0.204	71	0%	88	34.1%	0	-	benign(0.005)	tolerated(1)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNA1D	776	genome.wustl.edu	37	3	53757617	53757617	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.I629fs	0.998	-	-	-	-	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
FOXP1	27086	genome.wustl.edu	37	3	71008527	71008527	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032682.4	-1	reviewed	p.V635	1.000	429	0%	384	18%	2	0%	-	-	-	NULL
HTR1F	3355	genome.wustl.edu	37	3	88040092	88040092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000866.3	+1	validated	p.L65I	1.000	299	0%	320	19.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
COL6A5	256076	genome.wustl.edu	37	3	130189788	130189788	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512836	+1	known	p.R769W	0.000	213	0%	424	16.5%	0	-	-	-	-	NULL
IGSF10	285313	genome.wustl.edu	37	3	151166050	151166050	+	Silent	SNP	G	G	A	rs193019990	by1000genomes	TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.V573	0.000	169	0.6%	296	29.1%	0	-	-	-	-	HMMPfam_I-set
MME	4311	genome.wustl.edu	37	3	154802023	154802023	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000902.3	+1	reviewed	p.R23*	0.674	233	0%	271	26.2%	1	0%	-	-	-	NULL
GABRA4	2557	genome.wustl.edu	37	4	46930659	46930659	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000809.2	-1	reviewed	p.V416	0.000	161	0%	109	29.4%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
STATH	6779	genome.wustl.edu	37	4	70864185	70864185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003154.2	+1	validated	p.A11S	0.287	545	0%	484	27.7%	0	-	unknown(0)	-	-	NULL
PRDM9	56979	genome.wustl.edu	37	5	23522864	23522864	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.S251*	0.734	228	0%	134	13.4%	0	-	-	-	-	HMMSmart_SET,superfamily_SSF82199
CHD1	1105	genome.wustl.edu	37	5	98215304	98215304	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001270.2	-1	reviewed	p.E1063	1.000	575	0%	661	44.8%	2	0%	-	-	-	NULL
TRPC7	57113	genome.wustl.edu	37	5	135692560	135692560	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378459	-1	known	p.A172T	0.831	132	0%	49	20.4%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PCDHB14	56122	genome.wustl.edu	37	5	140604566	140604566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018934.2	+1	reviewed	p.H497D	0.001	110	0%	33	27.3%	4	25%	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SASH1	23328	genome.wustl.edu	37	6	148840937	148840944	+	Frame_Shift_Del	DEL	TTCTCCTA	TTCTCCTA	-	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	TTCTCCTA	TTCTCCTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015278.3	+1	validated	p.F373fs	1.000:1.000:1.000:1.000:1.000:0.998:0.999:0.969	-	-	-	-	-	-	-	-	-	NULL
SNX13	23161	genome.wustl.edu	37	7	17873740	17873740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015132.4	-1	reviewed	p.R511H	1.000	251	0%	323	33.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
LOC100289506	100289506	genome.wustl.edu	37	7	75958842	75958842	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342770.1	+1	model	p.K90	1.000	41	0%	25	32%	2	0%	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91667845	91667845	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.E1484A	0.013	181	0%	256	17.6%	0	-	probably_damaging(0.98)	tolerated(0.23)	neutral(0.465)	NULL
COL1A2	1278	genome.wustl.edu	37	7	94039751	94039751	+	Missense_Mutation	SNP	G	G	T	rs72658104		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000089.3	+1	reviewed	p.G370V	1.000	95	0%	89	20.2%	16	0%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
ZC3HAV1	56829	genome.wustl.edu	37	7	138764804	138764804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020119.3	-1	reviewed	p.R295C	0.020	95	0%	38	26.3%	2	50%	probably_damaging(0.954)	deleterious(0.04)	deleterious(0.746)	NULL
OR2A2	442361	genome.wustl.edu	37	7	143807190	143807190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005480.2	+1	validated	p.D172G	0.000	242	0%	170	10.6%	0	-	benign(0.023)	tolerated(0.16)	neutral(0.060)	HMMPfam_7tm_1,superfamily_SSF81321
GIMAP5	55340	genome.wustl.edu	37	7	150439564	150439564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018384.3	+1	reviewed	p.V113I	0.963	113	0%	83	14.5%	4	0%	possibly_damaging(0.487)	deleterious(0.05)	deleterious(0.507)	HMMPfam_AIG1,superfamily_P-loop containing nucleoside triphosphate hydrolases
FGFR1	2260	genome.wustl.edu	37	8	38272092	38272092	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023110.2	-1	reviewed	p.T678S	1.000	134	0%	200	65%	21	61.9%	possibly_damaging(0.904)	deleterious(0.04)	deleterious(0.708)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MIR124-2	406908	genome.wustl.edu	37	8	65291774	65291774	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385081	+1	known	NULL	1.000	189	0%	124	20.2%	0	-	-	-	-	-
CRISPLD1	83690	genome.wustl.edu	37	8	75929321	75929321	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031461.4	+1	validated	p.K323N	1.000	457	0%	711	19.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
TAF1L	138474	genome.wustl.edu	37	9	32633297	32633297	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.A761P	0.983	721	0%	586	30.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PRKCQ	5588	genome.wustl.edu	37	10	6553040	6553040	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006257.2	-1	reviewed	p.V79L	0.401	510	0%	367	24.3%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ITIH5	80760	genome.wustl.edu	37	10	7621858	7621858	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030569.5	-1	validated	p.A426	0.035	217	0%	109	19.3%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PTEN	5728	genome.wustl.edu	37	10	89692895	89692895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.G127R	1.000	391	0%	531	35.8%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692911	89692911	+	Missense_Mutation	SNP	G	G	A	rs121909241		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.G132D	1.000	362	0%	496	40.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PNLIP	5406	genome.wustl.edu	37	10	118315631	118315631	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000936.2	+1	reviewed	e8+1	1.000	283	0%	369	16.5%	0	-	-	-	-	-
CPXM2	119587	genome.wustl.edu	37	10	125558682	125558682	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198148.2	-1	validated	p.V229	1.000	168	0%	195	24.1%	0	-	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
C10orf137	26098	genome.wustl.edu	37	10	127431671	127431672	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015608.2	+1	validated	p.S773fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271237	1271237	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T4379S	0.003	416	0%	302	17.2%	2	0%	unknown(0)	-	-	NULL
QSER1	79832	genome.wustl.edu	37	11	32956297	32956297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076786.1	+1	provisional	p.M1036V	0.000	229	0%	181	50.8%	1	0%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
LOC399881	399881	genome.wustl.edu	37	11	43284632	43284632	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040375.2	-1	model	NULL	1.000	103	0%	94	21.3%	0	-	-	-	-	-
PRG3	10394	genome.wustl.edu	37	11	57147230	57147230	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006093.3	-1	validated	p.Q38*	0.011	213	0%	136	30.1%	0	-	-	-	-	NULL
PICALM	8301	genome.wustl.edu	37	11	85742581	85742581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007166.2	-1	validated	p.T68S	1.000	353	0%	456	44.5%	1	0%	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
ENSG00000204455	0	genome.wustl.edu	37	11	89595761	89595761	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311917	+1	known	p.W364C	0.006	733	0%	656	9.3%	0	-	-	-	-	HMMPfam_SPRY
BIRC2	329	genome.wustl.edu	37	11	102239216	102239216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001166.3	+1	reviewed	p.L435V	1.000	285	0%	396	23.2%	6	16.6%	possibly_damaging(0.848)	tolerated(0.45)	neutral(0.338)	superfamily_SSF57924
CBL	867	genome.wustl.edu	37	11	119149250	119149250	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005188.2	+1	reviewed	p.R420*	1.000	237	0%	235	16.2%	0	-	-	-	-	superfamily_SSF57850
OR10G8	219869	genome.wustl.edu	37	11	123900556	123900556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004464.1	+1	provisional	p.V76G	0.991	602	0%	365	24.4%	0	-	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PDE3A	5139	genome.wustl.edu	37	12	20782879	20782879	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000921.3	+1	validated	p.C526	0.991	222	0%	177	25.4%	0	-	-	-	-	NULL
LETMD1	25875	genome.wustl.edu	37	12	51451840	51451840	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015416.3	+1	validated	p.S314C	1.000	418	0%	492	18.9%	15	13.3%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_LETM1
OR4K15	81127	genome.wustl.edu	37	14	20444323	20444323	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005486.1	+1	provisional	p.T216S	0.979	396	0%	402	48.3%	0	-	benign(0.182)	tolerated(0.08)	neutral(0.317)	HMMPfam_7tm_1,superfamily_SSF81321
NYNRIN	57523	genome.wustl.edu	37	14	24879060	24879060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025081.2	+1	validated	p.P687L	0.033	134	0%	91	31.9%	0	-	possibly_damaging(0.95)	tolerated(0.06)	deleterious(0.716)	NULL
RBM25	58517	genome.wustl.edu	37	14	73572944	73572944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021239.2	+1	validated	p.R473Q	0.989	57	1.8%	161	13.7%	74	18.9%	unknown(0)	deleterious(0.03)	-	NULL
SORD	6652	genome.wustl.edu	37	15	45357499	45357499	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003104.4	+1	validated	p.G152	0.979	160	0%	65	26.2%	2	0%	-	-	-	superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains
LOC100288617	100288617	genome.wustl.edu	37	17	1481612	1481612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343497.1	+1	model	p.E292Q	0.990	130	0%	63	65.1%	4	0%	-	-	-	NULL
TP53	7157	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.Y220C	0.998	340	0%	194	58.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
DDX5	1655	genome.wustl.edu	37	17	62496727	62496742	+	Frame_Shift_Del	DEL	GAAGCACAGAGATAAG	GAAGCACAGAGATAAG	-	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	GAAGCACAGAGATAAG	GAAGCACAGAGATAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004396.3	-1	validated	p.L456fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC9A3R1	9368	genome.wustl.edu	37	17	72763099	72763099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004252.3	+1	reviewed	p.N261S	1.000	320	0%	196	69.4%	5	40%	benign(0.052)	deleterious(0.03)	neutral(0.367)	NULL
SLC16A5	9121	genome.wustl.edu	37	17	73096192	73096192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004695.2	+1	provisional	p.S145L	1.000	50	0%	21	81%	8	100%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KRI1	65095	genome.wustl.edu	37	19	10664793	10664793	+	Missense_Mutation	SNP	C	C	T	rs190575647	by1000genomes	TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023008.3	-1	validated	p.R655Q	0.001	85	0%	68	16.2%	39	17.9%	benign(0.003)	tolerated(0.18)	neutral(0.056)	NULL
SMARCA4	6597	genome.wustl.edu	37	19	11098590	11098590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128849.1	+1	reviewed	p.R370C	1.000	38	0%	16	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF737	100129842	genome.wustl.edu	37	19	20728207	20728207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343624.1	-1	model	p.R268C	0.001	148	0%	165	18.2%	0	-	benign(0.08)	tolerated(0.2)	neutral(0.054)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CYP2A7P1	1550	genome.wustl.edu	37	19	41531558	41531559	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301171	-1	known	p.L198fs	0.367:0.372	-	-	-	-	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
ZNF665	79788	genome.wustl.edu	37	19	53668354	53668354	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024733.3	-1	provisional	p.C463	0.568	233	0%	171	23.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SYT5	6861	genome.wustl.edu	37	19	55685989	55685989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003180.2	-1	validated	p.G286C	1.000	324	0%	267	21.3%	1	100%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
C20orf96	140680	genome.wustl.edu	37	20	264603	264603	+	Splice_Site	SNP	C	C	A	rs188822360	by1000genomes	TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153269.1	-1	predicted	e4+1	0.501	408	0%	355	14.9%	0	-	-	-	-	-
C20orf96	140680	genome.wustl.edu	37	20	264604	264604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153269.1	-1	predicted	p.K102N	0.477	426	0%	367	15.3%	3	0%	possibly_damaging(0.916)	deleterious(0.02)	deleterious(0.750)	NULL
XKR7	343702	genome.wustl.edu	37	20	30584762	30584762	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011718.1	+1	provisional	p.S414	0.557	138	0%	82	15.9%	0	-	-	-	-	HMMPfam_XK-related
EFCAB8	388795	genome.wustl.edu	37	20	31496183	31496183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440534	+1	known	p.E471K	0.033	288	0.3%	179	25.1%	0	-	-	-	-	superfamily_WD40 repeat-like
EYA2	2139	genome.wustl.edu	37	20	45702842	45702843	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005244.4	+1	reviewed	p.Y177fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SBF1	6305	genome.wustl.edu	37	22	50899673	50899673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002972.2	-1	validated	p.L961P	1.000	63	0%	35	31.4%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
ENSG00000211459	0	genome.wustl.edu	37	MT	1401	1401	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389680	+1	known	NULL	NULL	5	0.000	41	0.976	3658	72.5%	-	-	-	-
MED14	9282	genome.wustl.edu	37	X	40513707	40513707	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.D1400	1.000	324	0%	338	19.5%	8	0%	-	-	-	NULL
CXorf67	340602	genome.wustl.edu	37	X	51151101	51151101	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342995	+1	known	p.P411	0.959	178	0%	82	12.2%	0	-	-	-	-	NULL
SLC7A3	84889	genome.wustl.edu	37	X	70145999	70145999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048164.2	-1	reviewed	p.M550I	1.000	251	0%	246	18.3%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83351250	83351250	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014496.4	-1	reviewed	p.K641	0.997	338	0%	356	28.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IL13RA1	3597	genome.wustl.edu	37	X	117907841	117907841	+	Splice_Site	DEL	G	G	-	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001560.2	+1	reviewed	e9-1	0.938	-	-	-	-	-	-	-	-	-	-
LOC392555	392555	genome.wustl.edu	37	X	141261299	141261299	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343852.1	-1	model	p.E210*	0.001	65	0%	57	24.6%	0	-	-	-	-	HMMPfam_MAGE
IRAK1	3654	genome.wustl.edu	37	X	153281962	153281962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0V8-01A-11D-A122-09	TCGA-BS-A0V8-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001569.3	-1	reviewed	p.L388M	1.000	74	0%	40	17.5%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
