Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CLSTN1	22883	genome.wustl.edu	37	1	9791873	9791873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009566.1	-1	validated	p.R837C	0.996	252	0%	256	25.8%	431	19.4%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27100153	27100153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.G1317W	1.000	116	0%	106	22.6%	16	12.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27101256	27101266	+	Frame_Shift_Del	DEL	GCACGGGCTCT	GCACGGGCTCT	-	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	GCACGGGCTCT	GCACGGGCTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.T1514fs	1.000:0.991:0.911:0.902:0.010:0.993:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52704334	52704334	+	Silent	SNP	A	A	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004799.2	+1	reviewed	p.V415	0.971	52	0%	38	21.1%	4	0%	-	-	-	NULL
KCND3	3752	genome.wustl.edu	37	1	112524890	112524890	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004980.3	-1	reviewed	p.S153	0.122	59	0%	62	24.2%	3	0%	-	-	-	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171526834	171526834	+	Silent	SNP	C	C	G	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412837	+1	known	p.P883R	0.077	379	0%	382	24.6%	74	24.3%	-	-	-	NULL
MIA3	375056	genome.wustl.edu	37	1	222806556	222806556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198551.2	+1	validated	p.L1148I	0.000	152	0%	133	25.6%	3	0%	benign(0.156)	tolerated(0.27)	neutral(0.048)	NULL
WNT9A	7483	genome.wustl.edu	37	1	228113098	228113098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003395.2	-1	validated	p.R73H	1.000	29	0%	30	23.3%	5	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_wnt,HMMSmart_WNT1
EXOC6B	23233	genome.wustl.edu	37	2	72740322	72740322	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015189.1	-1	validated	p.Y369F	1.000	405	0%	395	19.5%	0	-	possibly_damaging(0.794)	tolerated(0.16)	neutral(0.357)	NULL
SLC35F5	80255	genome.wustl.edu	37	2	114500333	114500333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025181.2	-1	provisional	p.L229R	0.997	436	0%	308	19.5%	3	33.3%	probably_damaging(0.978)	tolerated(0.43)	neutral(0.434)	superfamily_Multidrug resistance efflux transporter EmrE
PKP4	8502	genome.wustl.edu	37	2	159481458	159481458	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.Y224*	1.000	216	0%	186	21%	18	16.6%	-	-	-	NULL
GLB1L	79411	genome.wustl.edu	37	2	220108240	220108240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024506.3	-1	provisional	p.T19M	0.000	80	0%	85	23.5%	0	-	unknown(0)	-	-	NULL
NMUR1	10316	genome.wustl.edu	37	2	232392954	232392954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006056.4	-1	validated	p.R260W	0.772	66	0%	102	19.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	T	rs121913400	byCluster	TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S33F	1.000	137	0%	179	21.2%	143	25.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153973234	153973234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015595.3	+1	validated	p.R863H	0.997	320	0%	277	19.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC30A9	10463	genome.wustl.edu	37	4	42062225	42062225	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006345.3	+1	validated	p.G286	0.999	548	0%	463	18.6%	5	0%	-	-	-	HMMPfam_Cation_efflux
POU4F2	5458	genome.wustl.edu	37	4	147561807	147561807	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004575.2	+1	validated	p.S359	0.033	72	0%	80	20%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PIK3R1	5295	genome.wustl.edu	37	5	67591078	67591089	+	In_Frame_Del	DEL	AGAAATTGACAA	AGAAATTGACAA	-	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	AGAAATTGACAA	AGAAATTGACAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.EIDK558in_frame_del	0.326:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591081	67591099	+	Frame_Shift_Del	DEL	AATTGACAAACGTATGAAC	AATTGACAAACGTATGAAC	-	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	AATTGACAAACGTATGAAC	AATTGACAAACGTATGAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.I559fs	1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.821:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80369248	80369248	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006909.1	+1	validated	p.D288	0.135	160	0%	177	24.9%	4	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
RAD50	10111	genome.wustl.edu	37	5	131915092	131915092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005732.3	+1	reviewed	p.V150A	1.000	232	0%	182	23.1%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TCOF1	6949	genome.wustl.edu	37	5	149754989	149754989	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135243.1	+1	reviewed	p.K528fs	0.001	-	-	-	-	-	-	-	-	-	HMMPfam_Treacle
SIM1	6492	genome.wustl.edu	37	6	100896119	100896121	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005068.2	-1	reviewed	p.E251in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785
RBM33	155435	genome.wustl.edu	37	7	155537901	155537901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053043.2	+1	validated	p.P862S	0.995	115	0%	128	18.8%	3	0%	possibly_damaging(0.706)	tolerated(0.2)	neutral(0.303)	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1575045	1575045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004745.3	+1	reviewed	p.V448M	0.989	49	0%	83	19.3%	0	-	possibly_damaging(0.804)	deleterious(0.01)	deleterious(0.708)	NULL
ASAH1	427	genome.wustl.edu	37	8	17924763	17924763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004315.4	-1	reviewed	p.M132I	1.000	107	0%	92	9.8%	33	30.3%	benign(0)	tolerated(1)	-	NULL
SLC7A13	157724	genome.wustl.edu	37	8	87242198	87242198	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138817.2	-1	validated	p.L103	0.000	172	0.6%	158	27.8%	0	-	-	-	-	NULL
TOP1MT	116447	genome.wustl.edu	37	8	144392337	144392337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052963.1	-1	reviewed	p.A535V	0.073	73	0%	121	18.2%	113	35.3%	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_Topismrse_insert,superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc
CNTNAP3	79937	genome.wustl.edu	37	9	39176054	39176054	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033655.3	-1	reviewed	p.S321	0.199	155	0%	103	21.4%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
KIAA1217	56243	genome.wustl.edu	37	10	24762255	24762255	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.P315	0.000	245	0%	246	25.6%	11	36.3%	-	-	-	NULL
MTPAP	55149	genome.wustl.edu	37	10	30602552	30602552	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018109.3	-1	validated	p.S579C	0.127	267	0%	156	26.9%	6	16.6%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130G	1.000	318	0%	287	45.6%	20	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
CDHR5	53841	genome.wustl.edu	37	11	621818	621818	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021924.4	-1	reviewed	p.V133	0.012	83	0%	90	26.7%	0	-	-	-	-	superfamily_Cadherin-like
OR4D10	390197	genome.wustl.edu	37	11	59245374	59245374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004705.1	+1	provisional	p.V158M	0.015	232	0%	195	18.5%	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KCNK4	50801	genome.wustl.edu	37	11	64060456	64060456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422670	+1	known	p.A14V	0.000	19	0%	19	42.1%	0	-	possibly_damaging(0.465)	-	-	NULL
OR6T1	219874	genome.wustl.edu	37	11	123814065	123814065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005187.1	-1	provisional	p.V161I	0.013	84	0%	102	24.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
ANKRD52	283373	genome.wustl.edu	37	12	56641844	56641844	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173595.3	-1	validated	p.K647	1.000	65	0%	63	27%	13	30.7%	-	-	-	HMMPfam_Ank,superfamily_ANK
NAP1L1	4673	genome.wustl.edu	37	12	76462718	76462720	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004537.4	-1	reviewed	p.E26in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78583935	78583935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.K2054T	1.000	98	0%	75	21.3%	0	-	possibly_damaging(0.521)	tolerated(0.08)	deleterious(0.475)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
GAS2L3	283431	genome.wustl.edu	37	12	101017658	101017658	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174942.1	+1	provisional	p.L359	0.001	90	0%	69	27.5%	0	-	-	-	-	NULL
ATP2A2	488	genome.wustl.edu	37	12	110783912	110783912	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170665.3	+1	reviewed	p.E950*	1.000	206	0%	196	27.6%	401	28.4%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
ING1	3621	genome.wustl.edu	37	13	111372118	111372118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005537.3	+1	reviewed	p.D370Y	1.000	90	0%	112	25%	55	30.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
RNF31	55072	genome.wustl.edu	37	14	24624842	24624842	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017999.4	+1	validated	p.Q812*	1.000	154	0%	176	27.8%	23	13%	-	-	-	HMMSmart_SM00647,superfamily_RING/U-box
IGHV1-58	28464	genome.wustl.edu	37	14	107078394	107078394	+	Silent	SNP	C	C	T	rs34508596		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390628	-1	known	p.T110	0.960	251	0%	207	25.1%	0	-	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
MGA	23269	genome.wustl.edu	37	15	42052627	42052627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.R2482L	1.000	272	0%	270	21.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
RBBP6	5930	genome.wustl.edu	37	16	24580488	24580488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.R826H	0.997	75	0%	58	10.3%	1	0%	probably_damaging(1)	-	-	NULL
SLC2A4	6517	genome.wustl.edu	37	17	7188193	7188193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042.2	+1	reviewed	p.V319I	1.000	212	0%	192	23.4%	4	0%	benign(0.039)	tolerated(0.31)	neutral(0.029)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
CHD3	1107	genome.wustl.edu	37	17	7801815	7801815	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.E744*	1.000	132	0%	115	21.7%	29	3.4%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ITGB3	3690	genome.wustl.edu	37	17	45361921	45361921	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000212.2	+1	reviewed	p.Q158	0.779	156	0%	151	24.5%	2	0%	-	-	-	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like,superfamily_Integrin domains
COL1A1	1277	genome.wustl.edu	37	17	48268763	48268763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000088.3	-1	reviewed	p.P739fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Collagen
TBC1D16	125058	genome.wustl.edu	37	17	77983988	77983988	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019020.2	-1	provisional	p.R250	1.000	54	0%	67	23.9%	13	30.7%	-	-	-	NULL
CYP2A6	1548	genome.wustl.edu	37	19	41355875	41355875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000762.5	-1	reviewed	p.R64H	0.001	138	0%	167	41.9%	0	-	benign(0.016)	tolerated(0.07)	neutral(0.320)	HMMPfam_p450,superfamily_Cytochrome P450
MYH14	79784	genome.wustl.edu	37	19	50762440	50762440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077186.1	+1	reviewed	p.R725C	0.999	41	0%	59	15.3%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO18B	84700	genome.wustl.edu	37	22	26317299	26317299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.V1814M	0.983	180	0%	190	22.6%	0	-	probably_damaging(0.979)	tolerated(0.09)	deleterious(0.718)	NULL
SFI1	9814	genome.wustl.edu	37	22	31952985	31952985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007467.1	+1	validated	p.R201H	0.999	210	0%	185	19.5%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CELSR1	9620	genome.wustl.edu	37	22	46760035	46760035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014246.1	-1	reviewed	p.R2965C	0.000	49	0%	83	24.1%	15	66.6%	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
BCOR	54880	genome.wustl.edu	37	X	39921444	39921444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.N1459S	1.000	171	0%	218	21.1%	34	67.6%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Ankyrin repeat
MAOA	4128	genome.wustl.edu	37	X	43515638	43515638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000240.2	+1	reviewed	p.V17L	0.991	160	0%	159	24.5%	6	66.6%	benign(0.059)	tolerated(0.05)	neutral(0.349)	superfamily_FAD/NAD(P)-binding domain
MAGEA11	4110	genome.wustl.edu	37	X	148797770	148797770	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005366.4	+1	reviewed	p.S208	0.000	159	0%	153	22.9%	0	-	-	-	-	NULL
SRPK3	26576	genome.wustl.edu	37	X	153046585	153046585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014370.3	+1	reviewed	p.G15D	0.055	7	0.000	12	0.333	0	-	unknown(0)	tolerated(0.33)	-	NULL
SRPK3	26576	genome.wustl.edu	37	X	153046985	153046985	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17C-01A-11D-A12J-09	TCGA-D1-A17C-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430541	+1	known	p.A86V	0.000	119	0%	151	20.5%	1	0%	-	-	-	superfamily_Protein kinase-like (PK-like)
