Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
IL23R	149233	genome.wustl.edu	37	1	67635073	67635073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144701.2	+1	reviewed	p.T40K	0.527	107	0%	107	27.1%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
SHC1	6464	genome.wustl.edu	37	1	154938892	154938892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130040.1	-1	validated	p.G362V	1.000	96	0%	86	48.8%	7	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
SMG5	23381	genome.wustl.edu	37	1	156236063	156236063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015327.2	-1	validated	p.R455H	1.000	64	0%	82	36.6%	3	100%	possibly_damaging(0.696)	tolerated(0.11)	deleterious(0.521)	NULL
PTPRC	5788	genome.wustl.edu	37	1	198703553	198703553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002838.3	+1	reviewed	p.R757M	1.000	381	0%	451	41.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ATP6V1C2	245973	genome.wustl.edu	37	2	10915102	10915122	+	Splice_Site	DEL	TTAAGGTTCACTGTTCGTGAA	TTAAGGTTCACTGTTCGTGAA	-	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	TTAAGGTTCACTGTTCGTGAA	TTAAGGTTCACTGTTCGTGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039362.1	+1	reviewed	e9-1	0.996:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.995:1.000:0.995:0.573:0.992:1.000:0.969:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
LRP1B	53353	genome.wustl.edu	37	2	141242991	141242991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.L3116F	1.000	577	0%	539	39.9%	0	-	benign(0.167)	deleterious(0.01)	neutral(0.421)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
FLJ45964	401040	genome.wustl.edu	37	2	240500083	240500083	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041563.1	+1	model	NULL	0.293	71	0%	80	38.8%	0	-	-	-	-	-
CTNNB1	1499	genome.wustl.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.D32Y	1.000	144	0%	110	42.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLS1	5357	genome.wustl.edu	37	3	142396911	142396911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145319.1	+1	reviewed	p.E179K	1.000	294	0%	274	51.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
GMPS	8833	genome.wustl.edu	37	3	155611487	155611487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003875.2	+1	reviewed	p.R70C	1.000	155	0.6%	182	40.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
FNDC3B	64778	genome.wustl.edu	37	3	172061888	172061888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135095.1	+1	validated	p.S697L	0.028	156	0%	166	36.7%	3	66.6%	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.H1047R	1.000	195	0%	253	51%	5	40%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
GLRA3	8001	genome.wustl.edu	37	4	175598257	175598257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006529.2	-1	validated	p.S300N	1.000	142	0%	160	40%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
ODZ3	55714	genome.wustl.edu	37	4	183714528	183714528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.R2235C	1.000	142	0%	184	47.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_RHS_repeat
PRKAA1	5562	genome.wustl.edu	37	5	40764721	40764721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206907.3	-1	reviewed	p.R459C	1.000	331	0%	335	42.4%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BTN3A3	10384	genome.wustl.edu	37	6	26452317	26452317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006994.4	+1	validated	p.T478I	0.000	207	0%	241	42.3%	12	41.6%	benign(0.284)	tolerated(0.09)	neutral(0.383)	HMMPfam_SPRY,HMMSmart_SPRY
MICA	100507436	genome.wustl.edu	37	6	31379863	31379863	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376219	+1	known	p.Q251	0.011	55	0%	65	12.3%	41	2.4%	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
GARS	2617	genome.wustl.edu	37	7	30668230	30668230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002047.2	+1	reviewed	p.M585T	1.000	429	0.2%	501	44.3%	8	25%	benign(0.107)	deleterious(0.02)	neutral(0.392)	superfamily_Class II aaRS and biotin synthetases
POU6F2	11281	genome.wustl.edu	37	7	39243867	39243867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007252.3	+1	reviewed	p.G75D	1.000	413	0%	355	42.3%	0	-	possibly_damaging(0.674)	tolerated(0.05)	deleterious(0.585)	NULL
OR1K1	392392	genome.wustl.edu	37	9	125562840	125562840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080859.1	+1	provisional	p.G147R	0.431	39	0%	57	15.8%	0	-	possibly_damaging(0.811)	tolerated(0.12)	deleterious(0.566)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NOTCH1	4851	genome.wustl.edu	37	9	139417591	139417591	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017617.3	-1	reviewed	p.N151	0.929	35	0%	45	44.4%	1	100%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
CDH23	64072	genome.wustl.edu	37	10	73558192	73558192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.R2304Q	1.000	89	0%	112	42.9%	0	-	possibly_damaging(0.632)	tolerated(0.25)	neutral(0.258)	HMMPfam_Cadherin,superfamily_Cadherin-like
PTEN	5728	genome.wustl.edu	37	10	89711966	89711967	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.H196fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
TRIM8	81603	genome.wustl.edu	37	10	104404546	104404546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030912.2	+1	validated	p.A58S	1.000	40	0%	49	10.2%	7	0%	possibly_damaging(0.891)	tolerated(0.24)	neutral(0.388)	superfamily_SSF57850
LUZP2	338645	genome.wustl.edu	37	11	24518841	24518841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009909.2	+1	validated	p.L18F	0.998	31	0%	28	42.9%	0	-	possibly_damaging(0.45)	tolerated(0.36)	neutral(0.167)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103059234	103059234	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.T2383	0.931	237	0%	229	39.7%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
NTM	50863	genome.wustl.edu	37	11	132177634	132177634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144058.1	+1	reviewed	p.R193K	1.000	181	0%	220	33.6%	0	-	benign(0.31)	deleterious(0.04)	neutral(0.446)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
DYRK4	8798	genome.wustl.edu	37	12	4714162	4714162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003845.1	+1	provisional	p.W288C	1.000	94	0%	114	44.7%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GPR19	2842	genome.wustl.edu	37	12	12815027	12815027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006143.2	-1	validated	p.T119M	0.882	158	0%	180	42.2%	0	-	benign(0.002)	tolerated(0.45)	neutral(0.012)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYO16	23026	genome.wustl.edu	37	13	109707440	109707440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.R1010Q	0.900	215	0%	176	45.5%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
PAPOLA	10914	genome.wustl.edu	37	14	97031314	97031314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032632.3	+1	validated	p.S722F	1.000	540	0%	511	40.3%	12	41.6%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
C15orf44	81556	genome.wustl.edu	37	15	65899518	65899518	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030800.1	-1	predicted	p.T67	0.827	152	0%	174	45.4%	0	-	-	-	-	superfamily_vWA-like
ALPK3	57538	genome.wustl.edu	37	15	85401200	85401200	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.D1279	0.352	10	0%	13	46.2%	0	-	-	-	-	NULL
CTCF	10664	genome.wustl.edu	37	16	67654607	67654607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.K365T	1.000	126	0%	164	43.3%	4	100%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CMIP	80790	genome.wustl.edu	37	16	81641227	81641227	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198390.2	+1	validated	p.L119Q	1.000	220	0%	209	34%	0	-	probably_damaging(0.962)	tolerated(0.1)	deleterious(0.692)	PatternScan_WD_REPEATS_1,superfamily_PH domain-like
ENSG00000168738	0	genome.wustl.edu	37	18	10855487	10855487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302079	-1	known	p.R133W	1.000	96	0%	124	46%	0	-	probably_damaging(0.984)	tolerated(0.06)	deleterious(0.753)	NULL
C3	718	genome.wustl.edu	37	19	6710653	6710653	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.G561	1.000	20	0%	14	50%	0	-	-	-	-	HMMPfam_A2M_N_2
COL5A3	50509	genome.wustl.edu	37	19	10077059	10077059	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015719.3	-1	reviewed	p.S1571	0.123	70	0%	65	30.8%	3	0%	-	-	-	HMMPfam_COLFI,HMMSmart_SM00038
LOC644189	644189	genome.wustl.edu	37	19	36912831	36912831	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016949.3	+1	model	NULL	0.998	17	0%	27	40.7%	0	-	-	-	-	-
ZIM2	23619	genome.wustl.edu	37	19	57286803	57286803	+	Silent	SNP	C	C	T	rs191866455	by1000genomes	TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015363.4	-1	reviewed	p.P279	0.005	238	0%	299	40.8%	0	-	-	-	-	NULL
C21orf88	114041	genome.wustl.edu	37	21	40969852	40969852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380612	-1	known	p.D73H	0.001	162	0%	195	43.1%	0	-	unknown(0)	-	-	NULL
LARGE	9215	genome.wustl.edu	37	22	33673046	33673046	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004737.4	-1	reviewed	p.Q691	1.000	73	0%	113	36.3%	3	33.3%	-	-	-	NULL
CACNG2	10369	genome.wustl.edu	37	22	36962420	36962420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006078.2	-1	reviewed	p.G139A	1.000	165	0%	203	45.8%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_PMP22_Claudin
SHANK3	85358	genome.wustl.edu	37	22	51159751	51159751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080420.1	+1	reviewed	p.R1180W	0.469	27	0%	30	33.3%	0	-	possibly_damaging(0.723)	deleterious(0.02)	deleterious(0.645)	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75649041	75649041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020932.2	+1	reviewed	p.A240T	0.000	17	0%	15	80%	0	-	possibly_damaging(0.482)	tolerated(0.09)	neutral(0.457)	NULL
UPF3B	65109	genome.wustl.edu	37	X	118971920	118971920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080632.1	-1	reviewed	p.R368W	1.000	429	0.2%	477	40%	11	0%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
MAP7D3	79649	genome.wustl.edu	37	X	135310849	135310849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024597.3	-1	reviewed	p.R607C	0.056	422	0.2%	419	38.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAP7
MAGEA10	4109	genome.wustl.edu	37	X	151303895	151303895	+	Silent	SNP	T	T	A	novel		TCGA-D1-A17S-01A-11D-A12J-09	TCGA-D1-A17S-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011543.1	-1	reviewed	p.L66	0.001	326	0%	309	43%	1	0%	-	-	-	NULL
