Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PLEKHN1	84069	genome.wustl.edu	37	1	908963	908963	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032129.2	+1	validated	p.P459	1.000	44	0%	64	12.5%	-	-	-	-	-	NULL
SLC2A5	6518	genome.wustl.edu	37	1	9101841	9101841	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135585.1	-1	validated	p.E192*	0.689	15	0%	30	26.7%	-	-	-	-	-	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21190990	21190990	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.D939	1.000	71	0%	104	21.2%	-	-	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
RIMKLA	284716	genome.wustl.edu	37	1	42880384	42880384	+	Silent	SNP	T	T	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173642.3	+1	validated	p.N305	0.818	31	0%	75	28%	-	-	-	-	-	NULL
CMPK1	51727	genome.wustl.edu	37	1	47834181	47834181	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016308.2	+1	validated	p.R71P	1.000	43	0%	66	18.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ADK,superfamily_SSF52540
HBXIP	10542	genome.wustl.edu	37	1	110950282	110950282	+	Silent	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006402.2	-1	reviewed	p.A69	0.000	25	0%	28	46.4%	-	-	-	-	-	NULL
KCNA10	3744	genome.wustl.edu	37	1	111061091	111061094	+	Frame_Shift_Del	DEL	ACTG	ACTG	-	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	ACTG	ACTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005549.2	-1	reviewed	p.Q106fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
OVGP1	5016	genome.wustl.edu	37	1	111969382	111969382	+	Silent	SNP	C	C	T	rs142439279	by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369728	-1	known	p.R21	0.000	6	0.000	9	0.667	-	-	-	-	-	NULL
PHGDH	26227	genome.wustl.edu	37	1	120263915	120263915	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006623.3	+1	reviewed	p.A87	0.001	37	0%	77	13%	-	-	-	-	-	HMMPfam_2-Hacid_dh,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
SMCP	4184	genome.wustl.edu	37	1	152857173	152857173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030663.2	+1	reviewed	p.P92L	0.000	26	0%	54	22.2%	-	-	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	NULL
KRTCAP2	200185	genome.wustl.edu	37	1	155145054	155145054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173852.3	-1	validated	p.K96N	1.000	57	0%	195	32.8%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Keratin_assoc
SOX13	9580	genome.wustl.edu	37	1	204091086	204091086	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005686.2	+1	reviewed	p.G278	0.976	19	0%	40	50%	-	-	-	-	-	NULL
PLEKHA6	22874	genome.wustl.edu	37	1	204217974	204217974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014935.2	-1	validated	p.R600L	1.000	39	0%	70	28.6%	-	-	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	NULL
LPGAT1	9926	genome.wustl.edu	37	1	212002520	212002520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014873.2	-1	validated	p.V40E	0.995	42	0%	65	64.6%	-	-	benign(0.225)	deleterious(0)	neutral(0.467)	superfamily_Glycerol-3-phosphate (1)-acyltransferase
ADCK3	56997	genome.wustl.edu	37	1	227152804	227152804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020247.4	+1	reviewed	p.S94F	0.731	19	0%	40	17.5%	-	-	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
AKT3	10000	genome.wustl.edu	37	1	243708888	243708888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005465.3	-1	reviewed	p.G392E	1.000	69	0%	95	20%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MBOAT2	129642	genome.wustl.edu	37	2	9098635	9098635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138799.2	-1	validated	p.C71S	1.000	30	0%	31	25.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
APOB	338	genome.wustl.edu	37	2	21224818	21224818	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.H4492	0.456	32	0%	33	15.2%	-	-	-	-	-	NULL
DDX18	8886	genome.wustl.edu	37	2	118586869	118586869	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006773.3	+1	reviewed	p.E566A	1.000	28	0%	40	32.5%	-	-	possibly_damaging(0.727)	deleterious(0.03)	deleterious(0.629)	superfamily_SSF52540
TFCP2L1	29842	genome.wustl.edu	37	2	122000033	122000033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014553.2	-1	validated	p.D224N	1.000	163	0%	262	26.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CP2
LOC100289293	100289293	genome.wustl.edu	37	2	132723981	132723981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342261.1	-1	model	p.R121W	0.088	5	0.000	9	0.667	-	-	-	-	-	NULL
SESTD1	91404	genome.wustl.edu	37	2	180047808	180047808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178123.4	-1	validated	p.S55G	1.000	59	0%	58	51.7%	-	-	possibly_damaging(0.465)	deleterious(0.02)	deleterious(0.536)	NULL
CWC22	57703	genome.wustl.edu	37	2	180810182	180810182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020943.2	-1	validated	p.A801T	0.000	116	0%	121	28.1%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671299	186671299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.K5756E	0.000	35	0%	35	28.6%	-	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
KCTD18	130535	genome.wustl.edu	37	2	201371718	201371718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152387.2	-1	validated	p.E8K	0.945	43	0%	48	18.8%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
CASP8	841	genome.wustl.edu	37	2	202136286	202136286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080125.1	+1	reviewed	p.R177K	0.014	87	0%	94	31.9%	-	-	benign(0.001)	tolerated(0.81)	neutral(0.001)	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
ZNF142	7701	genome.wustl.edu	37	2	219507593	219507593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.E1216K	1.000	18	0%	17	29.4%	-	-	probably_damaging(0.996)	tolerated(0.28)	deleterious(0.493)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HRH1	3269	genome.wustl.edu	37	3	11301158	11301158	+	Silent	SNP	G	G	A	rs140953941	by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000861.3	+1	reviewed	p.S145	0.000	25	0%	47	25.5%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RPL14	9045	genome.wustl.edu	37	3	40503520	40503521	+	In_Frame_Ins	INS	-	-	CTGCTG	rs61749576	byFrequency	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034996.1	+1	reviewed	p.153in_frame_insAA	0.019:0.022	-	-	-	-	-	-	-	-	-	NULL
ZNF502	91392	genome.wustl.edu	37	3	44762831	44762831	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134440.1	+1	validated	p.Q174	1.000	40	0%	57	28.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DCP1A	55802	genome.wustl.edu	37	3	53326214	53326214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018403.5	-1	reviewed	p.P423L	0.050	50	0%	105	23.8%	-	-	-	-	-	NULL
BBX	56987	genome.wustl.edu	37	3	107497237	107497237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142568.1	+1	validated	p.E692K	1.000	22	0%	70	22.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RETNLB	84666	genome.wustl.edu	37	3	108476024	108476024	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032579.2	-1	validated	p.P3	0.000	18	0%	45	60%	-	-	-	-	-	HMMPfam_Resistin
PHLDB2	90102	genome.wustl.edu	37	3	111632168	111632168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134438.1	+1	validated	p.E446D	1.000	27	0%	37	24.3%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
LOC100289182	100289182	genome.wustl.edu	37	3	139257805	139257805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342372.1	+1	model	p.A29V	0.871	58	0%	89	14.6%	-	-	-	-	-	NULL
XRN1	54464	genome.wustl.edu	37	3	142116261	142116261	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019001.3	-1	validated	p.S750*	1.000	83	0%	141	18.4%	-	-	-	-	-	NULL
SKIL	6498	genome.wustl.edu	37	3	170108991	170108991	+	Silent	SNP	A	A	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005414.3	+1	validated	p.Q613	0.979	14	0%	28	50%	-	-	-	-	-	NULL
ABLIM2	84448	genome.wustl.edu	37	4	8082515	8082515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130083.1	-1	validated	p.G157S	1.000	57	0%	39	30.8%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
HTRA3	94031	genome.wustl.edu	37	4	8307843	8307843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053044.2	+1	provisional	p.A448S	0.007	11	0%	18	33.3%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	superfamily_PDZ domain-like
CDH9	1007	genome.wustl.edu	37	5	26881680	26881680	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.L645	1.000	44	0%	70	47.1%	-	-	-	-	-	HMMPfam_Cadherin_C
SLC1A3	6507	genome.wustl.edu	37	5	36677103	36677103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004172.4	+1	reviewed	p.R226Q	0.003	61	0%	99	16.2%	-	-	benign(0.002)	tolerated(0.24)	neutral(0.037)	HMMPfam_SDF
GPBP1	65056	genome.wustl.edu	37	5	56510004	56510004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127235.2	+1	validated	p.P16L	1.000	133	0%	174	19%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRDM6	93166	genome.wustl.edu	37	5	122495254	122495254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136239.1	+1	validated	p.E359K	1.000	88	0%	97	20.6%	-	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
PRDM6	93166	genome.wustl.edu	37	5	122515882	122515882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136239.1	+1	validated	p.P513H	1.000	41	0%	81	25.9%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC36A1	206358	genome.wustl.edu	37	5	150838428	150838428	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078483.2	+1	reviewed	p.P25	0.056	12	0%	15	60%	-	-	-	-	-	NULL
HIST1H3D	8351	genome.wustl.edu	37	6	26197239	26197239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003530.3	-1	reviewed	p.K80N	1.000	45	0%	63	49.2%	-	-	possibly_damaging(0.928)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2AM	8336	genome.wustl.edu	37	6	27860756	27860756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003514.2	-1	reviewed	p.Y58N	1.000	34	0%	59	22%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
PRICKLE4	29964	genome.wustl.edu	37	6	41754697	41754697	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013397.5	+1	validated	p.E329*	0.019	26	0%	52	32.7%	-	-	-	-	-	NULL
EYS	346007	genome.wustl.edu	37	6	64472494	64472495	+	In_Frame_Ins	INS	-	-	ATG	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.2644in_frame_insS	0.908:0.152	-	-	-	-	-	-	-	-	-	HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
TULP4	56995	genome.wustl.edu	37	6	158924559	158924559	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020245.3	+1	validated	p.E1288D	1.000	12	0%	25	24%	-	-	benign(0.006)	tolerated(0.27)	neutral(0.034)	NULL
SLC22A3	6581	genome.wustl.edu	37	6	160857846	160857846	+	Missense_Mutation	SNP	C	C	G	rs141104413		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021977.2	+1	reviewed	p.S337C	1.000	84	0%	96	24%	-	-	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PLG	5340	genome.wustl.edu	37	6	161127463	161127463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000301.3	+1	reviewed	p.Y25C	0.935	88	0%	114	18.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAN_1,HMMSmart_PAN_AP,superfamily_SSF57414
PSPH	5723	genome.wustl.edu	37	7	56079562	56079562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004577.3	-1	reviewed	p.D191H	1.000	39	0%	44	50%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Hydrolase,superfamily_HAD-like
KPNA7	402569	genome.wustl.edu	37	7	98792950	98792950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145715.1	-1	validated	p.S99C	0.998	15	0%	10	90%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
LAMB4	22798	genome.wustl.edu	37	7	107738804	107738805	+	Frame_Shift_Ins	INS	-	-	AGGGGTTGATGGACGCCCCCTCCCCGCCCTCCCACTATGGACTTACGCTGGCAGCCCAT	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414450	-1	known	p.C430fs	0.029:0.022	-	-	-	-	-	-	-	-	-	NULL
IRF5	3663	genome.wustl.edu	37	7	128587352	128587381	+	Splice_Site	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098627.2	+1	reviewed	e5+1	0.766:0.707:0.638:0.562:0.538:0.511:0.480:0.444:0.402:0.360:0.317:0.273:0.262:0.251:0.239:0.226:0.213:0.199:0.185:0.170:0.155:0.138:0.122:0.120:0.118:0.116:0.113:0.110:0.107:0.104	-	-	-	-	-	-	-	-	-	-
DLC1	10395	genome.wustl.edu	37	8	13251175	13251175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182643.2	-1	reviewed	p.A401T	0.118	61	0%	48	14.6%	-	-	benign(0)	tolerated(1)	-	NULL
GSR	2936	genome.wustl.edu	37	8	30546715	30546715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000637.2	-1	validated	p.R335Q	1.000	24	0%	23	47.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
POLB	5423	genome.wustl.edu	37	8	42229166	42229166	+	Silent	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002690.1	+1	provisional	p.R333	0.856	16	0%	30	26.7%	-	-	unknown(0)	-	-	HMMSmart_POLXc,superfamily_SSF81301
NCOA2	10499	genome.wustl.edu	37	8	71060520	71060520	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006540.2	-1	validated	p.I865fs	1.000	-	-	-	-	-	-	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113353746	113353746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.D2204E	1.000	67	0%	100	48%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SLC24A2	25769	genome.wustl.edu	37	9	19786439	19786439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020344.1	-1	provisional	p.M142I	1.000	17	0%	20	35%	-	-	possibly_damaging(0.945)	tolerated(0.13)	deleterious(0.642)	NULL
UBAP1	51271	genome.wustl.edu	37	9	34241886	34241886	+	Missense_Mutation	SNP	A	A	G	rs142114254	by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016525.4	+1	reviewed	p.H288R	1.000	23	0%	36	27.8%	-	-	probably_damaging(0.959)	tolerated(0.2)	neutral(0.452)	NULL
KIAA1958	158405	genome.wustl.edu	37	9	115422332	115422332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133465.2	+1	predicted	p.H712N	1.000	11	0%	23	26.1%	-	-	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	NULL
USP6NL	9712	genome.wustl.edu	37	10	11505018	11505018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080491.2	-1	validated	p.V654I	0.000	13	0%	27	44.4%	-	-	benign(0.004)	tolerated(0.28)	neutral(0.032)	NULL
PIP4K2A	5305	genome.wustl.edu	37	10	22896910	22896910	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005028.4	-1	reviewed	p.P95	0.002	25	0%	42	45.2%	-	-	-	-	-	HMMSmart_SM00330,superfamily_SAICAR synthase-like
LOC646360	646360	genome.wustl.edu	37	10	37627383	37627383	+	RNA	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078419.1	+1	model	NULL	1.000	24	0%	55	14.5%	-	-	-	-	-	-
KAT6B	23522	genome.wustl.edu	37	10	76737148	76737148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.E690K	0.996	100	0%	143	33.6%	-	-	benign(0.21)	-	-	NULL
ANXA11	311	genome.wustl.edu	37	10	81930654	81930654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001157.2	-1	reviewed	p.G25C	0.995	16	0%	27	70.4%	-	-	unknown(0)	deleterious(0.02)	-	NULL
FGFR2	2263	genome.wustl.edu	37	10	123260344	123260344	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.D522fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
IFITM3	10410	genome.wustl.edu	37	11	320649	320649	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021034.2	-1	validated	p.P55	0.309	41	4.9%	23	26.1%	-	-	-	-	-	HMMPfam_CD225
CD59	966	genome.wustl.edu	37	11	33743927	33743927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000611.5	-1	reviewed	p.S22L	0.178	51	0%	102	21.6%	-	-	benign(0.074)	tolerated(0.14)	neutral(0.255)	NULL
PC	5091	genome.wustl.edu	37	11	66618552	66618552	+	Missense_Mutation	SNP	C	C	T	rs193271416	by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000920.3	-1	reviewed	p.E728K	0.986	6	0.000	17	0.235	-	-	benign(0)	tolerated(1)	-	HMMPfam_HMGL-like,superfamily_SSF51569
INPPL1	3636	genome.wustl.edu	37	11	71940256	71940256	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001567.3	+1	reviewed	p.S214*	0.987	16	0%	16	43.8%	-	-	-	-	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1137169	1137169	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178040.2	+1	reviewed	p.R34*	1.000	31	0%	38	31.6%	-	-	-	-	-	NULL
CSDA	8531	genome.wustl.edu	37	12	10862582	10862582	+	Silent	SNP	C	C	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003651.4	-1	validated	p.R235	1.000	22	0%	33	42.4%	-	-	-	-	-	NULL
ETNK1	55500	genome.wustl.edu	37	12	22797150	22797150	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039481.1	+1	reviewed	p.S230*	0.000	45	0%	64	31.2%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
ITPR2	3709	genome.wustl.edu	37	12	26564327	26564327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.T2442I	0.985	76	0%	76	22.4%	-	-	benign(0.031)	tolerated(0.2)	neutral(0.051)	HMMPfam_Ion_trans
LRRK2	120892	genome.wustl.edu	37	12	40692188	40692188	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.V1080	0.634	53	0%	58	34.5%	-	-	-	-	-	superfamily_SSF52058
PMEL	6490	genome.wustl.edu	37	12	56348073	56348073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006928.3	-1	validated	p.W637C	0.999	57	0%	183	28.4%	-	-	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	NULL
COQ10A	93058	genome.wustl.edu	37	12	56661633	56661633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144576.3	+1	validated	p.E64K	0.378	38	0%	69	20.3%	-	-	benign(0.001)	tolerated(0.65)	neutral(0.003)	NULL
MIP	4284	genome.wustl.edu	37	12	56848300	56848300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012064.3	-1	reviewed	p.R33H	1.000	17	0%	47	36.2%	-	-	benign(0.026)	tolerated(0.14)	neutral(0.251)	HMMPfam_MIP,superfamily_MIP
ENSG00000246966	0	genome.wustl.edu	37	12	70914045	70914046	+	RNA	INS	-	-	AAGT	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501222	+1	known	NULL	0.023:0.026	-	-	-	-	-	-	-	-	-	-
UBE2N	7334	genome.wustl.edu	37	12	93835634	93835634	+	Silent	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003348.3	-1	reviewed	p.I9	1.000	17	0%	18	50%	-	-	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
C12orf42	374470	genome.wustl.edu	37	12	103700092	103700092	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099336.1	-1	validated	p.A97	0.000	28	0%	47	42.6%	-	-	-	-	-	NULL
ORAI1	84876	genome.wustl.edu	37	12	122064774	122064779	+	In_Frame_Del	DEL	CCGCCA	CCGCCA	-	rs141919534	byCluster;by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	CCGCCA	CCGCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032790.3	+1	reviewed	p.PP46in_frame_del	0.716:0.710:0.709:0.897:0.997:0.999	-	-	-	-	-	-	-	-	-	NULL
RNASEH2B	79621	genome.wustl.edu	37	13	51501540	51501540	+	Splice_Site	SNP	C	C	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000459983	+1	known	NULL	1.000	64	0%	76	38.2%	-	-	-	-	-	-
OR4K15	81127	genome.wustl.edu	37	14	20444410	20444410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005486.1	+1	provisional	p.I245V	0.944	70	0%	94	29.8%	-	-	benign(0.012)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_SSF81321
OR11H6	122748	genome.wustl.edu	37	14	20692287	20692287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004480.1	+1	provisional	p.R140Q	1.000	57	0%	66	54.5%	-	-	possibly_damaging(0.884)	deleterious(0.04)	deleterious(0.694)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
RNF31	55072	genome.wustl.edu	37	14	24617669	24617669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382687	+1	known	p.E9K	0.000	13	0%	23	43.5%	-	-	unknown(0)	-	-	NULL
TMEM63C	57156	genome.wustl.edu	37	14	77648238	77648240	+	Splice_Site	DEL	GTG	GTG	-	rs35484514	byCluster;by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	GTG	GTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020431.2	+1	validated	e0+1	0.931:0.961	-	-	-	-	-	-	-	-	-	-
IGHV3-16	28447	genome.wustl.edu	37	14	106621988	106621988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390604	-1	known	p.R86Q	0.012	67	0%	101	16.8%	-	-	probably_damaging(0.96)	deleterious(0.03)	deleterious(0.768)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
MAP2K1	5604	genome.wustl.edu	37	15	66729191	66729191	+	Silent	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002755.3	+1	reviewed	p.F133	1.000	62	0%	46	54.3%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SH3GL3	6457	genome.wustl.edu	37	15	84287234	84287235	+	RNA	INS	-	-	TTG	rs10700817		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026799.1	+1	validated	NULL	0.000:0.679	-	-	-	-	-	-	-	-	-	-
COG7	91949	genome.wustl.edu	37	16	23417496	23417496	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153603.3	-1	reviewed	p.K521N	1.000	31	0%	88	55.7%	-	-	benign(0.282)	tolerated(0.22)	neutral(0.129)	HMMPfam_COG7
SPG7	6687	genome.wustl.edu	37	16	89590168	89590169	+	Frame_Shift_Ins	INS	-	-	ATCTC	rs113476208	byCluster;by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312632	+1	known	p.R23fs	0.007:0.005	-	-	-	-	-	-	-	-	-	NULL
OR1A1	8383	genome.wustl.edu	37	17	3118972	3118972	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014565.2	+1	validated	p.Q20*	0.033	49	0%	49	24.5%	-	-	-	-	-	superfamily_SSF81321
TP53	7157	genome.wustl.edu	37	17	7578492	7578492	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.W146*	0.902	14	0%	31	83.9%	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
TMEM107	84314	genome.wustl.edu	37	17	8079581	8079581	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032354.3	-1	validated	p.S10fs	0.996	-	-	-	-	-	-	-	-	-	NULL
SPOP	8405	genome.wustl.edu	37	17	47696461	47696461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007226.1	-1	reviewed	p.R121Q	1.000	29	0%	49	91.8%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
KDSR	2531	genome.wustl.edu	37	18	60999112	60999113	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002035.2	-1	reviewed	p.R301fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CDH19	28513	genome.wustl.edu	37	18	64239381	64239381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021153.2	-1	reviewed	p.G21R	0.000	66	0%	35	37.1%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
MIDN	90007	genome.wustl.edu	37	19	1255012	1255012	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177401.4	+1	validated	p.E270*	1.000	10	0%	21	100%	-	-	-	-	-	NULL
PLIN5	440503	genome.wustl.edu	37	19	4529255	4529257	+	In_Frame_Del	DEL	GAG	GAG	-	rs140507757	by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013706.2	-1	validated	p.S117in_frame_del	0.877:0.894:0.900	-	-	-	-	-	-	-	-	-	HMMPfam_Perilipin
IL12RB1	3594	genome.wustl.edu	37	19	18179231	18179231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005535.1	-1	reviewed	p.T432M	0.114	31	0%	53	28.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FXYD5	53827	genome.wustl.edu	37	19	35651661	35651661	+	Silent	SNP	G	G	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014164.5	+1	reviewed	p.G83	0.000	60	0%	83	54.2%	-	-	-	-	-	NULL
HRC	3270	genome.wustl.edu	37	19	49657711	49657725	+	In_Frame_Del	DEL	CATCATCATCATCAT	CATCATCATCATCAT	-	rs66501117	byCluster;by1000genomes	TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	CATCATCATCATCAT	CATCATCATCATCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002152.2	-1	reviewed	p.DDDDD257in_frame_del	0.165:0.109:0.119:0.136:0.120:0.147:0.127:0.067:0.074:0.005:0.003:0.023:0.006:0.000:0.004	-	-	-	-	-	-	-	-	-	NULL
FAM71E2	284418	genome.wustl.edu	37	19	55874320	55874320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145402.1	-1	predicted	p.R39C	0.995	19	0%	19	63.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PEG3	5178	genome.wustl.edu	37	19	57327982	57327982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006210.2	-1	reviewed	p.P610T	0.531	38	0%	56	25%	-	-	benign(0.005)	tolerated(0.49)	neutral(0.011)	superfamily_C2H2 and C2HC zinc fingers
ZNF805	390980	genome.wustl.edu	37	19	57764655	57764655	+	Silent	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145078.1	+1	validated	p.P23	0.000	48	0%	61	24.6%	-	-	-	-	-	NULL
SLC12A5	57468	genome.wustl.edu	37	20	44680427	44680427	+	Silent	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134771.1	+1	reviewed	p.G788	0.778	27	0%	72	25%	-	-	-	-	-	NULL
HRH3	11255	genome.wustl.edu	37	20	60791938	60791938	+	Silent	SNP	C	C	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007232.2	-1	validated	p.R154	0.046	9	0.000	31	0.258	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DYRK1A	1859	genome.wustl.edu	37	21	38862551	38862551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001396.3	+1	reviewed	p.D247H	1.000	40	0%	70	21.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EIF4ENIF1	56478	genome.wustl.edu	37	22	31851930	31851930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019843.3	-1	reviewed	p.R336Q	1.000	24	0%	66	25.8%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_EIF4E-T
SUN2	25777	genome.wustl.edu	37	22	39136274	39136274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015374.1	-1	validated	p.D452N	0.105	4	0.000	14	0.429	-	-	possibly_damaging(0.951)	tolerated(0.25)	neutral(0.431)	NULL
GK	2710	genome.wustl.edu	37	X	30742280	30742280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128127.1	+1	reviewed	p.T516A	0.969	89	0%	57	36.8%	-	-	benign(0.003)	tolerated(0.45)	neutral(0.012)	superfamily_SSF53067
SYTL5	94122	genome.wustl.edu	37	X	37948727	37948727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138780.2	+1	reviewed	p.D240Y	0.248	26	0%	20	45%	-	-	probably_damaging(0.992)	tolerated(0.1)	deleterious(0.734)	HMMPfam_RPH3A_effector
SRPX	8406	genome.wustl.edu	37	X	38009094	38009094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006307.4	-1	validated	p.H422R	1.000	68	0%	37	45.9%	-	-	possibly_damaging(0.923)	tolerated(0.39)	neutral(0.389)	NULL
UBA1	7317	genome.wustl.edu	37	X	47062083	47062083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003334.3	+1	reviewed	p.R368Q	0.030	32	0%	48	20.8%	-	-	benign(0)	tolerated(0.86)	neutral(0.001)	superfamily_MoeB
ITIH6	347365	genome.wustl.edu	37	X	54784084	54784084	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.S808*	0.001	64	0%	51	41.2%	-	-	-	-	-	NULL
MAGED2	10916	genome.wustl.edu	37	X	54837460	54837460	+	Silent	SNP	T	T	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014599.4	+1	reviewed	p.P248	0.999	16	0%	16	43.8%	-	-	-	-	-	NULL
MSN	4478	genome.wustl.edu	37	X	64959738	64959738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FI-A2EW-01A-11D-A17D-09	TCGA-FI-A2EW-10A-01D-A17D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.E573K	1.000	34	0%	25	28%	-	-	benign(0.19)	tolerated(0.16)	neutral(0.077)	superfamily_Moesin,HMMPfam_ERM
