Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
DNAJC11	55735	genome.wustl.edu	37	1	6727788	6727788	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018198.3	-1	validated	p.Q120fs	1.000	-	-	-	-	-	-	-	-	-	NULL
GLIS1	148979	genome.wustl.edu	37	1	54060495	54060495	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147193.2	-1	validated	p.P27	0.056	15	0%	12	50%	0	-	-	-	-	NULL
ATF3	467	genome.wustl.edu	37	1	212788581	212788581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030287.2	+1	reviewed	p.G73E	0.999	44	0%	47	78.7%	1	100%	benign(0)	tolerated(1)	-	superfamily_A DNA-binding domain in eukaryotic transcription factors
ACMSD	130013	genome.wustl.edu	37	2	135621176	135621176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138326.2	+1	validated	p.A154V	0.152	112	0%	120	30%	0	-	possibly_damaging(0.632)	deleterious(0.02)	deleterious(0.604)	HMMPfam_Amidohydro_2,superfamily_Metallo-dependent hydrolases
MARCH7	64844	genome.wustl.edu	37	2	160608959	160608959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022826.2	+1	validated	p.I554F	1.000	138	0%	110	46.4%	20	45%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_RINGv,HMMPfam_zf-C3HC4,superfamily_SSF57850
KCNH7	90134	genome.wustl.edu	37	2	163302815	163302815	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033272.2	-1	reviewed	p.I423L	1.000	106	0%	106	31.1%	0	-	benign(0.111)	deleterious(0.01)	neutral(0.414)	superfamily_Voltage-gated potassium channels
TTN	7273	genome.wustl.edu	37	2	179585878	179585878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.G6379V	1.000	129	0%	122	41.8%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179594419	179594419	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.A4943	1.000	379	0%	361	38.8%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
ALS2	57679	genome.wustl.edu	37	2	202622444	202622444	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020919.3	-1	reviewed	p.P384	0.992	165	0%	172	40.7%	3	0%	-	-	-	NULL
EPHB1	2047	genome.wustl.edu	37	3	134967172	134967172	+	Silent	SNP	C	C	T	rs143367042		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004441.4	+1	reviewed	p.I837	0.022	99	0%	104	45.2%	1	100%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PIK3CA	5290	genome.wustl.edu	37	3	178916936	178916936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R108H	1.000	152	0%	260	66.9%	2	0%	possibly_damaging(0.945)	tolerated(0.06)	deleterious(0.712)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236
LMLN	89782	genome.wustl.edu	37	3	197765764	197765783	+	RNA	DEL	CCAACCACCTCGTCAGCAAC	CCAACCACCTCGTCAGCAAC	-	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	CCAACCACCTCGTCAGCAAC	CCAACCACCTCGTCAGCAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026786.1	+1	reviewed	NULL	0.971:0.959:0.901:0.867:0.858:0.787:0.708:0.651:0.287:0.226:0.185:0.169:0.950:0.966:0.978:0.992:0.994:0.996:0.996:0.994	-	-	-	-	-	-	-	-	-	-
GAK	2580	genome.wustl.edu	37	4	858938	858938	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000511980	-1	known	p.R158Q	0.000	20	0%	14	50%	50	50%	-	-	-	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5146570	5146570	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	e3+2	1.000	102	0%	112	39.3%	0	-	-	-	-	-
C5orf42	65250	genome.wustl.edu	37	5	37168962	37168962	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	p.Q1268	0.001	182	0%	166	41%	5	40%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589236	67589236	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.Y408*	1.000	83	0%	93	43%	2	0%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
SNCAIP	9627	genome.wustl.edu	37	5	121761103	121761103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000395466	+1	known	p.I63V	0.954	175	0%	182	42.3%	1	0%	unknown(0)	-	-	NULL
CDSN	1041	genome.wustl.edu	37	6	31084618	31084618	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001264.3	-1	reviewed	p.D258	1.000	91	0%	136	35.3%	1	0%	-	-	-	NULL
RGL2	5863	genome.wustl.edu	37	6	33260284	33260284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004761.3	-1	validated	p.R682L	1.000	104	0%	90	44.4%	39	56.4%	benign(0.185)	deleterious(0.01)	neutral(0.423)	HMMPfam_RA,HMMSmart_SM00314,superfamily_Ubiquitin-like
PKD1L1	168507	genome.wustl.edu	37	7	47921646	47921646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.L1101F	0.000	85	1.2%	132	22%	0	-	benign(0.125)	tolerated(0.09)	neutral(0.307)	NULL
PHKG1	5260	genome.wustl.edu	37	7	56151072	56151072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006213.3	-1	reviewed	p.R149Q	1.000	70	0%	64	39.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FUT10	84750	genome.wustl.edu	37	8	33318926	33318926	+	Silent	SNP	G	G	A	rs190595975	by1000genomes	TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032664.3	-1	validated	p.C15	0.124	70	0%	82	12.2%	4	0%	-	-	-	HMMPfam_Glyco_transf_10
CSMD3	114788	genome.wustl.edu	37	8	113418769	113418769	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.S1931	0.998	128	0%	102	37.3%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
FER1L6	654463	genome.wustl.edu	37	8	124968257	124968257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039112.2	+1	validated	p.K7E	1.000	38	0%	39	41%	0	-	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	NULL
GATA3	2625	genome.wustl.edu	37	10	8115824	8115824	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002295.1	+1	reviewed	p.S391	0.952	145	0%	144	43.1%	3	33.3%	-	-	-	NULL
CYP2C8	1558	genome.wustl.edu	37	10	96827092	96827092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000770.3	-1	reviewed	p.K118N	0.000	480	0%	540	41.9%	0	-	unknown(0)	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CNNM1	26507	genome.wustl.edu	37	10	101117372	101117372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020348.2	+1	validated	p.E559D	1.000	152	0%	156	40.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CBS,HMMSmart_CBS
C10orf46	143384	genome.wustl.edu	37	10	120467080	120467081	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153810.4	-1	validated	p.Y206fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
ATG16L2	89849	genome.wustl.edu	37	11	72535873	72535873	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033388.1	+1	validated	p.A328P	0.953	33	0%	16	87.5%	13	61.5%	possibly_damaging(0.437)	deleterious(0.02)	deleterious(0.525)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KCNA1	3736	genome.wustl.edu	37	12	5020711	5020711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000217.2	+1	reviewed	p.A56V	1.000	60	0%	61	18%	0	-	benign(0.111)	tolerated(0.29)	neutral(0.038)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	rs121913529	byCluster	TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12A	1.000	84	1.2%	45	37.8%	10	80%	possibly_damaging(0.434)	deleterious(0.03)	deleterious(0.506)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
GLI1	2735	genome.wustl.edu	37	12	57864433	57864433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005269.2	+1	reviewed	p.R637Q	1.000	56	0%	38	50%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123687292	123687292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.E402K	1.000	143	0%	164	46.3%	5	80%	possibly_damaging(0.938)	deleterious(0.02)	deleterious(0.766)	NULL
MTIF3	219402	genome.wustl.edu	37	13	28014332	28014332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152912.4	-1	reviewed	p.R85Q	0.971	525	0.2%	541	38.1%	21	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IF3_N,superfamily_Translation initiation factor IF3 N-terminal domain
NBEA	26960	genome.wustl.edu	37	13	35756573	35756573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.R1580H	1.000	201	0%	204	33.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PRMT5	10419	genome.wustl.edu	37	14	23393388	23393388	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006109.3	-1	validated	p.E402Q	1.000	358	0%	349	42.4%	115	45.2%	benign(0.023)	tolerated(0.75)	neutral(0.003)	HMMPfam_PRMT5,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
IGHE	3497	genome.wustl.edu	37	14	106067360	106067360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390541	-1	known	p.Q167K	0.000	14	0%	17	82.4%	0	-	benign(0.165)	tolerated(0.25)	neutral(0.052)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
CSPG4	1464	genome.wustl.edu	37	15	75982915	75982915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001897.4	-1	reviewed	p.R164Q	0.867	11	0.000	8	0.500	0	-	probably_damaging(0.976)	tolerated(0.55)	neutral(0.425)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CTNS	1497	genome.wustl.edu	37	17	3563642	3563642	+	Silent	SNP	G	G	C	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031681.2	+1	reviewed	p.P361	0.927	43	0%	36	91.7%	11	100%	-	-	-	NULL
KIAA0753	9851	genome.wustl.edu	37	17	6531785	6531785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014804.2	-1	validated	p.S124G	0.009	183	0%	116	16.4%	3	0%	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
TP53	7157	genome.wustl.edu	37	17	7578398	7578398	+	Missense_Mutation	SNP	G	G	C	rs68130327		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.H178D	1.000	131	0%	66	84.8%	100	97%	possibly_damaging(0.711)	deleterious(0.01)	deleterious(0.663)	superfamily_p53-like transcription factors,HMMPfam_P53
OSBPL7	114881	genome.wustl.edu	37	17	45886525	45886525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145798.2	-1	reviewed	p.R696H	0.858	114	0%	318	19.5%	32	25%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	HMMPfam_Oxysterol_BP
UPF1	5976	genome.wustl.edu	37	19	18967730	18967730	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002911.3	+1	reviewed	p.P623	0.027	34	0.000	8	0.625	62	43.5%	-	-	-	superfamily_SSF52540
SULT2A1	6822	genome.wustl.edu	37	19	48386910	48386910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003167.3	-1	reviewed	p.T90M	0.000	197	0%	203	37.4%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF460	10794	genome.wustl.edu	37	19	57802716	57802716	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006635.3	+1	validated	p.R269	0.646	203	0%	225	46.7%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PLAGL2	5326	genome.wustl.edu	37	20	30784823	30784823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002657.3	-1	reviewed	p.T308M	0.311	171	0%	217	49.3%	68	50%	benign(0.063)	deleterious(0.03)	neutral(0.368)	NULL
SERINC3	10955	genome.wustl.edu	37	20	43142575	43142575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006811.2	-1	validated	p.S49N	1.000	148	0%	144	45.1%	48	35.4%	benign(0.062)	deleterious(0)	neutral(0.449)	HMMPfam_Serinc
LOC649264	649264	genome.wustl.edu	37	22	23715928	23715928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001131286.2	-1	model	p.D61N	1.000	16	0%	27	33.3%	9	0%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
TCN2	6948	genome.wustl.edu	37	22	31011586	31011586	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000355.3	+1	reviewed	e6-2	0.993	66	0%	67	52.2%	0	-	-	-	-	-
PRRG1	5638	genome.wustl.edu	37	X	37312736	37312736	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000950.2	+1	reviewed	p.E173	1.000	125	0%	175	10.9%	2	0%	-	-	-	NULL
WDR45	11152	genome.wustl.edu	37	X	48932903	48932903	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007075.3	-1	reviewed	p.Q290*	1.000	65	0%	39	33.3%	105	0.9%	-	-	-	superfamily_WD40_like
BRCC3	79184	genome.wustl.edu	37	X	154305454	154305454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K3-01A-11W-A062-09	TCGA-B5-A0K3-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024332.2	+1	reviewed	p.V69I	0.000	130	0%	95	32.6%	43	0%	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_Mov34,HMMSmart_SM00232,superfamily_JAB1/MPN domain
