Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MEGF6	1953	genome.wustl.edu	37	1	3411011	3411043	+	In_Frame_Del	DEL	GTGGCAGGAGCACTCCAGATGGCAGGCGGCTCC	GTGGCAGGAGCACTCCAGATGGCAGGCGGCTCC	-	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	GTGGCAGGAGCACTCCAGATGGCAGGCGGCTCC	GTGGCAGGAGCACTCCAGATGGCAGGCGGCTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001409.3	-1	validated	p.GAACHLECSCH1341in_frame_del	0.000:0.000:0.006:0.010:0.876:0.880:0.743:0.391:0.007:0.111:0.824:0.810:0.003:0.001:0.003:0.014:0.043:0.080:0.007:0.000:0.004:0.348:0.995:1.000:1.000:0.000:0.000:0.000:0.003:0.002:0.000:0.996:0.996	-	-	-	-	-	-	-	-	-	HMMSmart_SM00180,superfamily_EGF/Laminin
C1orf94	84970	genome.wustl.edu	37	1	34662916	34662916	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134734.1	+1	validated	p.V137	0.005	46	0%	27	22.2%	0	-	-	-	-	NULL
CYP4A22	284541	genome.wustl.edu	37	1	47610098	47610098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010969.2	+1	reviewed	p.R287K	0.997	200	0.5%	85	25.9%	0	-	benign(0.005)	tolerated(0.89)	-	HMMPfam_p450,superfamily_Cytochrome P450
GLMN	11146	genome.wustl.edu	37	1	92731983	92731983	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053274.2	-1	reviewed	p.L403	0.996	177	0%	154	33.8%	0	-	-	-	-	HMMPfam_FKBP12
SMG7	9887	genome.wustl.edu	37	1	183513555	183513555	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173156.2	+1	validated	p.T637S	1.000	170	0%	104	33.7%	2	100%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
PLEKHA6	22874	genome.wustl.edu	37	1	204198103	204198103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014935.2	-1	validated	p.L905V	1.000	134	0%	66	30.3%	3	66.6%	benign(0.001)	tolerated(0.99)	-	NULL
APOB	338	genome.wustl.edu	37	2	21249773	21249773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.F711L	1.000	146	0.7%	142	11.3%	0	-	probably_damaging(0.993)	-	-	HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
TTC27	55622	genome.wustl.edu	37	2	32875217	32875217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017735.3	+1	provisional	p.L186S	0.902	300	0%	215	49.3%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
XPO1	7514	genome.wustl.edu	37	2	61717816	61717816	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003400.3	-1	reviewed	p.P661	1.000	221	0.5%	271	17.7%	11	27.2%	-	-	-	superfamily_ARM-type_fold
NAGK	55577	genome.wustl.edu	37	2	71297699	71297699	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017567.4	+1	validated	p.L33	1.000	123	0%	53	32.1%	16	31.2%	-	-	-	HMMPfam_BcrAD_BadFG,superfamily_SSF53067
TSGA10	80705	genome.wustl.edu	37	2	99695134	99695134	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025244.2	-1	validated	p.S290R	1.000	208	0%	201	34.3%	0	-	possibly_damaging(0.923)	tolerated(0.05)	deleterious(0.718)	NULL
DDX18	8886	genome.wustl.edu	37	2	118583956	118583956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006773.3	+1	reviewed	p.K545Q	1.000	169	0%	62	21%	2	50%	benign(0.302)	deleterious(0)	deleterious(0.538)	superfamily_SSF52540
KLHL23	151230	genome.wustl.edu	37	2	170592281	170592281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144711.4	+1	validated	p.R253C	0.178	72	0%	43	30.2%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_Gal_oxid_central
TTN	7273	genome.wustl.edu	37	2	179449918	179449918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.A18948E	1.000	352	0%	146	35.6%	0	-	possibly_damaging(0.873)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
PDE1A	5136	genome.wustl.edu	37	2	183104837	183104837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005019.3	-1	validated	p.R133K	1.000	250	0%	187	31%	0	-	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_PDEase_I_N
PIKFYVE	200576	genome.wustl.edu	37	2	209179981	209179981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.S631P	1.000	79	0%	36	22.2%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	superfamily_GroEL-intermediate domain like
IRS1	3667	genome.wustl.edu	37	2	227662488	227662488	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005544.2	-1	reviewed	p.S323A	1.000	26	0%	19	31.6%	1	0%	possibly_damaging(0.937)	tolerated(0.15)	deleterious(0.624)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4712536	4712536	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.S710R	0.353	176	0%	130	43.8%	1	0%	benign(0.055)	tolerated(0.14)	neutral(0.253)	NULL
ANO10	55129	genome.wustl.edu	37	3	43474156	43474156	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018075.3	-1	validated	p.Q621E	1.000	104	0%	29	48.3%	3	100%	benign(0.02)	tolerated(1)	neutral(0.001)	HMMPfam_DUF590
CD96	10225	genome.wustl.edu	37	3	111297916	111297916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198196.2	+1	reviewed	p.L212F	0.000	127	1.6%	65	21.5%	3	0%	benign(0.145)	tolerated(0.59)	neutral(0.017)	HMMSmart_SM00409,superfamily_Immunoglobulin
PPP2R3A	5523	genome.wustl.edu	37	3	135742045	135742045	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181897.1	+1	reviewed	e1+2	1.000	160	0%	64	35.9%	0	-	-	-	-	-
LDB2	9079	genome.wustl.edu	37	4	16504492	16504492	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001290.3	-1	validated	p.V299G	1.000	179	0%	61	47.5%	1	0%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_LIM_bind
ARAP2	116984	genome.wustl.edu	37	4	36230699	36230699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	p.S137I	0.000	125	0%	69	15.9%	0	-	benign(0.139)	deleterious(0.03)	neutral(0.377)	NULL
GNPDA2	132789	genome.wustl.edu	37	4	44724143	44724151	+	In_Frame_Del	DEL	TGAACTGAA	TGAACTGAA	-	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	TGAACTGAA	TGAACTGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138335.1	-1	provisional	p.IQF25in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.992:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like
PDGFRA	5156	genome.wustl.edu	37	4	55156513	55156513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006206.4	+1	reviewed	p.S972G	1.000	75	0%	51	39.2%	0	-	possibly_damaging(0.912)	tolerated(0.1)	deleterious(0.650)	NULL
KIT	3815	genome.wustl.edu	37	4	55597568	55597568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000222.2	+1	reviewed	p.R739K	0.982	87	0%	46	23.9%	0	-	benign(0.017)	tolerated(0.28)	neutral(0.032)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FRAS1	80144	genome.wustl.edu	37	4	79462277	79462277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512123	+1	known	p.L2241F	1.000	49	0%	21	47.6%	1	0%	-	-	-	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119978824	119978824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133477.2	+1	validated	p.E1174G	0.338	96	0%	39	46.2%	0	-	benign(0.141)	deleterious(0)	neutral(0.457)	NULL
GYPB	2994	genome.wustl.edu	37	4	144938033	144938034	+	Frame_Shift_Ins	INS	-	-	T	rs11940948	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506679	-1	known	p.D14fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41015494	41015494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.K991E	1.000	178	0%	73	26%	0	-	possibly_damaging(0.892)	tolerated(1)	neutral(0.351)	superfamily_ARM repeat
PDGFRB	5159	genome.wustl.edu	37	5	149515296	149515296	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002609.3	-1	reviewed	p.W62*	1.000	48	0%	17	58.8%	1	0%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
NCR2	9436	genome.wustl.edu	37	6	41303862	41303862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004828.3	+1	validated	p.S30R	0.000	75	0%	26	57.7%	0	-	benign(0.118)	tolerated(0.73)	neutral(0.011)	HMMSmart_SM00409,superfamily_Immunoglobulin
FBXL18	80028	genome.wustl.edu	37	7	5540343	5540343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000297035	-1	known	p.R78W	0.032	12	0%	19	42.1%	0	-	unknown(0)	-	-	NULL
IL6	3569	genome.wustl.edu	37	7	22771172	22771172	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000600.3	+1	reviewed	p.R207W	0.364	48	0%	29	27.6%	3	33.3%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_IL6,HMMSmart_SM00126,superfamily_4-helical cytokines
AKAP9	10142	genome.wustl.edu	37	7	91682097	91682097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.N1809S	0.499	114	0%	107	18.7%	1	100%	benign(0)	tolerated(1)	-	NULL
EMID2	136227	genome.wustl.edu	37	7	101183288	101183288	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397927	+1	known	p.A188P	0.886	56	0%	30	23.3%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
TRBV19	28568	genome.wustl.edu	37	7	142326772	142326772	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390393	+1	known	p.T24P	0.131	69	0%	62	24.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV20-1	28567	genome.wustl.edu	37	7	142334655	142334655	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390394	+1	known	p.I26N	0.048	56	0%	59	23.7%	1	0%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMPfam_V-set,superfamily_Immunoglobulin
MLL3	58508	genome.wustl.edu	37	7	151845262	151845262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.R4584W	1.000	47	0%	13	46.2%	1	100%	unknown(0)	-	-	HMMPfam_FYRN,HMMSmart_SM00541
FZD3	7976	genome.wustl.edu	37	8	28360570	28360570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017412.2	+1	reviewed	p.T14A	0.259	239	0%	69	58%	1	100%	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
SLC10A5	347051	genome.wustl.edu	37	8	82606883	82606883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010893.2	-1	validated	p.G109C	1.000	222	0%	202	31.7%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CNGB3	54714	genome.wustl.edu	37	8	87641300	87641300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019098.4	-1	reviewed	p.D443H	1.000	134	0%	45	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
CDH17	1015	genome.wustl.edu	37	8	95158288	95158288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144663.1	-1	reviewed	p.P679T	0.984	127	0%	37	43.2%	1	0%	probably_damaging(1)	tolerated(0.42)	deleterious(0.514)	HMMPfam_Cadherin,superfamily_Cadherin-like
FAM91A1	157769	genome.wustl.edu	37	8	124799949	124799949	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144963.2	+1	validated	p.S413A	1.000	155	0%	133	29.3%	0	-	benign(0.418)	tolerated(0.56)	neutral(0.142)	NULL
PTK2	5747	genome.wustl.edu	37	8	141685585	141685585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005607.3	-1	reviewed	p.H881R	1.000	372	0%	465	21.7%	6	0%	benign(0.053)	tolerated(0.3)	neutral(0.032)	NULL
PAPPA	5069	genome.wustl.edu	37	9	118982339	118982339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002581.3	+1	reviewed	p.V681G	0.998	100	0%	19	57.9%	0	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	HMMPfam_Peptidase_M43,superfamily_SSF55486
CNTRL	11064	genome.wustl.edu	37	9	123920326	123920326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.L1568R	0.725	90	0%	27	44.4%	2	100%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
LRRC18	474354	genome.wustl.edu	37	10	50121480	50121480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006939.3	-1	validated	p.I241F	0.019	237	0.4%	62	38.7%	0	-	benign(0.167)	deleterious(0.03)	neutral(0.380)	NULL
PTEN	5728	genome.wustl.edu	37	10	89653820	89653820	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.E40*	1.000	216	0%	469	79.3%	1	100%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
HABP2	3026	genome.wustl.edu	37	10	115343023	115343023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004132.3	+1	reviewed	p.K381N	1.000	120	0%	121	79.3%	2	100%	benign(0.001)	tolerated(1)	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
INSC	387755	genome.wustl.edu	37	11	15197553	15197553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031853.3	+1	provisional	p.V155E	1.000	36	0%	10	40%	0	-	possibly_damaging(0.916)	tolerated(1)	neutral(0.367)	superfamily_ARM repeat
ENSG00000205035	0	genome.wustl.edu	37	11	49805553	49805553	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357667	+1	known	p.G279	1.000	122	0%	36	77.8%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CATSPER1	117144	genome.wustl.edu	37	11	65788612	65788612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.S579Y	0.003	43	0%	20	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
POLD3	10714	genome.wustl.edu	37	11	74347275	74347275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006591.1	+1	validated	p.R385G	0.979	123	0%	131	39.7%	3	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_CDC27
GLB1L3	112937	genome.wustl.edu	37	11	134180978	134180978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080407.2	+1	validated	p.P401S	0.029	80	0%	44	77.3%	2	100%	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	NULL
LOC100288190	100288190	genome.wustl.edu	37	12	6566603	6566603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343139.1	-1	model	p.R24S	0.184	78	0%	101	33.7%	10	10%	-	-	-	NULL
APPL2	55198	genome.wustl.edu	37	12	105589097	105589097	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018171.3	-1	validated	p.L395	0.946	186	0%	117	37.6%	0	-	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33015113	33015113	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.K418fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ACTN1	87	genome.wustl.edu	37	14	69346732	69346732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130004.1	-1	reviewed	p.I743V	1.000	82	0%	23	34.8%	29	31%	possibly_damaging(0.6)	tolerated(0.17)	neutral(0.266)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51285651	51285651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007347.3	+1	validated	p.D725E	0.030	133	0%	94	23.4%	0	-	benign(0.059)	tolerated(0.57)	neutral(0.010)	NULL
CRTC3	64784	genome.wustl.edu	37	15	91083281	91083281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022769.3	+1	validated	p.Q48R	1.000	180	0%	67	37.3%	1	0%	benign(0.072)	deleterious(0)	neutral(0.450)	NULL
ENSG00000205536	0	genome.wustl.edu	37	16	21893236	21893236	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380598	-1	known	p.K382N	1.000	49	0%	118	45.8%	0	-	-	-	-	NULL
JMJD5	79831	genome.wustl.edu	37	16	27230286	27230286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145348.1	+1	reviewed	p.P321L	1.000	96	0%	34	26.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_JmjC,superfamily_SSF51197
TP53	7157	genome.wustl.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.C238Y	1.000	47	0%	44	65.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
ODF4	146852	genome.wustl.edu	37	17	8249080	8249080	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153007.4	+1	reviewed	p.V228	0.000	132	1.5%	47	36.2%	0	-	-	-	-	NULL
MYH2	4620	genome.wustl.edu	37	17	10429961	10429961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.Y1381C	0.999	265	0%	66	34.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
PDK2	5164	genome.wustl.edu	37	17	48172259	48172263	+	Splice_Site	DEL	AGGAT	AGGAT	-	rs74819030		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	AGGAT	AGGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506992	+1	known	e0+1	0.000:0.000	-	-	-	-	-	-	-	-	-	-
TMEM92	162461	genome.wustl.edu	37	17	48356589	48356589	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153229.2	+1	validated	p.T134P	0.002	65	0%	29	44.8%	3	0%	possibly_damaging(0.563)	tolerated(0.15)	neutral(0.433)	NULL
COG1	9382	genome.wustl.edu	37	17	71199771	71199771	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018714.2	+1	reviewed	p.P741A	1.000	211	0%	124	39.5%	12	66.6%	benign(0.207)	tolerated(0.16)	neutral(0.080)	NULL
RAB37	326624	genome.wustl.edu	37	17	72725496	72725496	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175738.4	+1	validated	p.I58	1.000	117	0%	35	80%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
TJP3	27134	genome.wustl.edu	37	19	3728710	3728710	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014428.1	+1	provisional	p.Q72*	0.999	58	1.7%	21	28.6%	1	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MIR7-3HG	284424	genome.wustl.edu	37	19	4769673	4769673	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027148.1	+1	validated	NULL	0.000	50	0%	24	41.7%	1	0%	-	-	-	-
MUC16	94025	genome.wustl.edu	37	19	9047061	9047061	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S11524C	0.000	242	0%	62	30.6%	0	-	possibly_damaging(0.945)	-	-	NULL
ZNF563	147837	genome.wustl.edu	37	19	12430167	12430167	+	Silent	SNP	C	C	G	rs139855867	by1000genomes	TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145276.2	-1	validated	p.P224	0.075	168	0%	116	36.2%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NCAN	1463	genome.wustl.edu	37	19	19359637	19359637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004386.2	+1	validated	p.I1256V	1.000	71	0%	19	36.8%	0	-	benign(0.311)	deleterious(0.02)	deleterious(0.480)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
RHPN2	85415	genome.wustl.edu	37	19	33512476	33512476	+	Splice_Site	DEL	C	C	-	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	e4+1	1.000	-	-	-	-	-	-	-	-	-	-
MLL4	9757	genome.wustl.edu	37	19	36219002	36219002	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.L1501	1.000	17	0.000	9	0.556	0	-	-	-	-	NULL
HNRNPL	3191	genome.wustl.edu	37	19	39334533	39334533	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001533.2	-1	reviewed	p.K277*	1.000	154	0%	58	32.8%	17	0%	-	-	-	superfamily_SSF54928
ZNF222	7673	genome.wustl.edu	37	19	44531292	44531292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129996.1	+1	validated	p.L54I	0.625	253	0%	57	29.8%	1	0%	possibly_damaging(0.88)	deleterious(0.04)	deleterious(0.692)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
PLEKHA4	57664	genome.wustl.edu	37	19	49348774	49348774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020904.2	-1	validated	p.G556S	1.000	89	0%	35	11.4%	35	8.5%	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	NULL
SYT5	6861	genome.wustl.edu	37	19	55687154	55687154	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003180.2	-1	validated	p.D155fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
EPB41L1	2036	genome.wustl.edu	37	20	34766555	34766555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012156.2	+1	reviewed	p.W151G	1.000	166	0%	71	38%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_SM00295,superfamily_Ubiquitin-like
KRTAP19-8	728299	genome.wustl.edu	37	21	32410708	32410708	+	Missense_Mutation	SNP	C	C	G	rs79705848		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099219.1	-1	provisional	p.G19R	0.001	181	0%	70	17.1%	0	-	unknown(0)	-	-	NULL
PDE9A	5152	genome.wustl.edu	37	21	44153531	44153531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002606.2	+1	reviewed	p.V188G	0.351	195	0%	185	43.8%	6	16.6%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
KRTAP10-10	353333	genome.wustl.edu	37	21	46058075	46058075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181688.1	+1	provisional	p.Q247H	0.102	73	0%	26	30.8%	0	-	benign(0.122)	tolerated(0.11)	neutral(0.282)	NULL
COL6A2	1292	genome.wustl.edu	37	21	47537845	47537845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001849.3	+1	reviewed	p.G371S	0.024	67	0%	23	30.4%	35	2.8%	benign(0.003)	-	-	HMMPfam_Collagen
CCDC157	550631	genome.wustl.edu	37	22	30766715	30766715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017437.2	+1	validated	p.R274H	1.000	31	0%	14	42.9%	1	0%	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
SOX10	6663	genome.wustl.edu	37	22	38369534	38369534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006941.3	-1	reviewed	p.Q457K	1.000	45	0%	15	26.7%	0	-	unknown(0)	tolerated(0.29)	-	NULL
GTPBP1	9567	genome.wustl.edu	37	22	39130403	39130403	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456823	+1	known	e7+1	0.000	1	0.000	6	1.000	0	-	-	-	-	-
ENSG00000210164	0	genome.wustl.edu	37	MT	10003	10003	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387429	+1	novel	NULL	NULL	58	0%	27	100%	110	93.6%	-	-	-	-
PIR	8544	genome.wustl.edu	37	X	15474138	15474138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018109.1	-1	reviewed	p.P105T	1.000	115	0%	53	39.6%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pirin,superfamily_RmlC_like_cupin
CNKSR2	22866	genome.wustl.edu	37	X	21545044	21545044	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014927.3	+1	reviewed	p.T339	0.997	145	2.1%	93	31.2%	0	-	-	-	-	HMMPfam_DUF1170
TAF9B	51616	genome.wustl.edu	37	X	77392447	77392447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015975.4	-1	reviewed	p.G149V	1.000	160	0%	92	33.7%	0	-	probably_damaging(0.966)	tolerated(0.07)	deleterious(0.727)	NULL
GPR174	84636	genome.wustl.edu	37	X	78426857	78426857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032553.1	+1	validated	p.W118L	0.966	199	0%	65	26.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
CYLC1	1538	genome.wustl.edu	37	X	83128234	83128234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TI-01A-11D-A10B-09	TCGA-BS-A0TI-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021118.1	+1	provisional	p.K173M	0.000	37	0%	66	27.3%	0	-	unknown(0)	deleterious(0)	-	NULL
