Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
COL16A1	1307	genome.wustl.edu	37	1	32150225	32150225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001856.3	-1	reviewed	p.A687S	1.000	50	0%	61	39.3%	2	0%	unknown(0)	tolerated(0.53)	-	HMMPfam_Collagen
LOC646377	646377	genome.wustl.edu	37	1	158848716	158848716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725569.1	+1	model	p.G101C	0.004	126	0%	80	35%	0	-	-	-	-	HMMPfam_PAAD_DAPIN
HMCN1	83872	genome.wustl.edu	37	1	186039802	186039802	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.V2684	1.000	211	0%	112	15.2%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CFH	3075	genome.wustl.edu	37	1	196658705	196658705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000186.3	+1	reviewed	p.C374G	0.941	220	0%	72	25%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
OR14A16	284532	genome.wustl.edu	37	1	247978284	247978284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001966.1	-1	provisional	p.S250P	0.000	137	0%	88	20.5%	0	-	possibly_damaging(0.904)	tolerated(0.09)	deleterious(0.655)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L5	81466	genome.wustl.edu	37	1	248185831	248185831	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355281	+1	known	p.Y194	0.400	374	0.3%	196	20.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TPO	7173	genome.wustl.edu	37	2	1488387	1488387	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000547.5	+1	reviewed	p.Y453S	0.998	44	0%	41	43.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
APOB	338	genome.wustl.edu	37	2	21255235	21255235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.A448V	0.962	56	0%	17	58.8%	0	-	benign(0)	-	-	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain
PLEK	5341	genome.wustl.edu	37	2	68613726	68613726	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002664.2	+1	validated	p.Y189N	0.995	208	0%	121	50.4%	3	0%	possibly_damaging(0.528)	deleterious(0.03)	deleterious(0.542)	HMMPfam_DEP,HMMSmart_DEP,superfamily_SSF46785
STEAP3	55240	genome.wustl.edu	37	2	120005381	120005381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182915.2	+1	validated	p.R217C	1.000	28	0%	80	23.7%	11	9%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_NAD(P)-binding Rossmann-fold domains
SCN9A	6335	genome.wustl.edu	37	2	167133663	167133663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.D891Y	0.644	346	0%	143	50.3%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TTN	7273	genome.wustl.edu	37	2	179647564	179647564	+	Silent	SNP	G	G	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.T1023	0.840	101	0%	46	21.7%	0	-	-	-	-	HMMPfam_I-set,superfamily_SSF48726
ERBB4	2066	genome.wustl.edu	37	2	212578349	212578349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005235.2	-1	reviewed	p.S303F	1.000	242	0.4%	235	17%	23	21.7%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Furin-like,superfamily_Growth factor receptor domain
AQP12B	653437	genome.wustl.edu	37	2	241621800	241621800	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102467.1	-1	validated	p.S152fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_MIP
VGLL3	389136	genome.wustl.edu	37	3	87018143	87018143	+	Silent	SNP	G	G	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494229	-1	known	p.L112V	1.000	69	0%	32	40.6%	0	-	-	-	-	NULL
SIDT1	54847	genome.wustl.edu	37	3	113327301	113327301	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017699.2	+1	validated	p.Y546	0.996	338	0%	264	16.3%	4	25%	-	-	-	NULL
EPHB1	2047	genome.wustl.edu	37	3	134670786	134670786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004441.4	+1	reviewed	p.D233H	1.000	178	0%	102	25.5%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
DVL3	1857	genome.wustl.edu	37	3	183887906	183887906	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004423.3	+1	reviewed	p.P537	0.526	26	0%	95	44.2%	122	29.5%	-	-	-	NULL
GABRB1	2560	genome.wustl.edu	37	4	47163373	47163373	+	Silent	SNP	C	C	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000812.3	+1	reviewed	p.L116	1.000	158	0%	78	26.9%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
LOC644578	644578	genome.wustl.edu	37	4	64216537	64216537	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_927694.2	+1	model	p.M290I	0.991	86	0%	203	14.8%	0	-	-	-	-	"HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
KIAA1109	84162	genome.wustl.edu	37	4	123283303	123283303	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000306802	+1	known	p.W1349*	1.000	196	0%	141	46.1%	18	66.6%	benign(0.42)	deleterious(0.01)	deleterious(0.542)	HMMPfam_FSA_C
SLC6A19	340024	genome.wustl.edu	37	5	1217005	1217005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003841.2	+1	reviewed	p.A373V	0.000	49	0%	114	27.2%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_SNF
CNOT8	9337	genome.wustl.edu	37	5	154251380	154251380	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004779.4	+1	provisional	p.F188L	1.000	409	0%	235	59.1%	60	61.6%	benign(0.419)	tolerated(0.11)	neutral(0.408)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
UIMC1	51720	genome.wustl.edu	37	5	176396234	176396234	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016290.3	-1	provisional	p.N174	1.000	97	0%	100	66%	3	0%	-	-	-	NULL
SYNCRIP	10492	genome.wustl.edu	37	6	86350171	86350171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006372.4	-1	validated	p.H87R	1.000	185	0%	450	43.6%	138	49.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MYO1G	64005	genome.wustl.edu	37	7	45015245	45015245	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033054.2	-1	validated	p.V134	1.000	148	0%	287	23.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
HYAL4	23553	genome.wustl.edu	37	7	123508467	123508467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012269.2	+1	reviewed	p.P47L	1.000	205	0%	82	35.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
KCNH2	3757	genome.wustl.edu	37	7	150647423	150647423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000238.2	-1	reviewed	p.R744Q	0.935	18	0%	16	43.8%	33	48.4%	possibly_damaging(0.827)	tolerated(0.1)	deleterious(0.601)	HMMSmart_SM00100,superfamily_cAMP-binding domain-like
MARCH8	220972	genome.wustl.edu	37	10	45953693	45953693	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002265.1	-1	validated	p.H290fs	0.633	-	-	-	-	-	-	-	-	-	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105361734	105361734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014631.2	-1	validated	p.A1053T	0.999	121	0%	253	24.1%	16	6.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00326,superfamily_SH3-domain
AMBRA1	55626	genome.wustl.edu	37	11	46563555	46563555	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017749.2	-1	validated	p.S581*	1.000	86	0%	67	20.9%	7	0%	-	-	-	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46563649	46563649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017749.2	-1	validated	p.P550S	0.996	77	0%	61	18%	7	0%	benign(0.032)	tolerated(0.45)	neutral(0.013)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46563735	46563735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017749.2	-1	validated	p.S521*	0.031	71	0%	54	25.9%	5	0%	-	-	-	NULL
OR5D13	390142	genome.wustl.edu	37	11	55541186	55541186	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001967.1	+1	provisional	p.Y91*	0.413	422	0%	109	20.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5M11	219487	genome.wustl.edu	37	11	56309920	56309920	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005245.1	-1	provisional	p.I272L	0.977	199	0%	104	30.8%	0	-	benign(0.199)	tolerated(0.06)	neutral(0.342)	HMMPfam_7tm_1,superfamily_SSF81321
KIAA1377	57562	genome.wustl.edu	37	11	101818803	101818803	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020802.2	+1	validated	p.Q146E	1.000	236	0%	119	26.9%	0	-	possibly_damaging(0.77)	deleterious(0)	deleterious(0.730)	NULL
LOC120364	120364	genome.wustl.edu	37	11	110659304	110659304	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_062025.5	-1	model	p.E132	0.998	5	0.000	7	1.000	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
B4GALNT3	283358	genome.wustl.edu	37	12	665751	665751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173593.3	+1	validated	p.R700H	0.998	72	0%	83	42.2%	11	27.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IPO8	10526	genome.wustl.edu	37	12	30792516	30792516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006390.2	-1	reviewed	p.H808Y	0.998	212	0%	125	28.8%	24	25%	possibly_damaging(0.446)	deleterious(0.01)	deleterious(0.551)	superfamily_ARM-type_fold
NUAK1	9891	genome.wustl.edu	37	12	106460791	106460791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014840.2	-1	validated	p.R592H	0.962	104	0%	50	92%	7	100%	benign(0.034)	tolerated(0.49)	neutral(0.013)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77672321	77672321	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.R2952	1.000	240	0%	102	37.3%	7	71.4%	-	-	-	NULL
OR4K5	79317	genome.wustl.edu	37	14	20389239	20389239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005483.1	+1	provisional	p.S158R	0.000	305	0%	167	12%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_7tm_1,superfamily_SSF81321
AKAP6	9472	genome.wustl.edu	37	14	33046446	33046446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.L823M	1.000	226	0%	157	19.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00150,superfamily_Spectrin repeat
PRPF39	55015	genome.wustl.edu	37	14	45564523	45564523	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017922.3	+1	validated	p.H27	0.001	164	0%	151	14.6%	15	13.3%	-	-	-	NULL
ZFYVE1	53349	genome.wustl.edu	37	14	73441624	73441624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021260.1	-1	reviewed	p.K617M	1.000	122	0%	131	19.8%	18	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
C15orf57	90416	genome.wustl.edu	37	15	40846194	40846211	+	In_Frame_Del	DEL	GTCCCCGGCTGCTGGCTC	GTCCCCGGCTGCTGGCTC	-	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	GTCCCCGGCTGCTGGCTC	GTCCCCGGCTGCTGGCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080791.1	-1	validated	p.EPAAGD182in_frame_del	0.145:0.963:0.967:0.730:0.183:0.163:0.141:0.139:0.074:0.030:0.003:0.003:0.005:0.021:0.024:0.029:0.037:0.017	-	-	-	-	-	-	-	-	-	NULL
C15orf57	90416	genome.wustl.edu	37	15	40846211	40846211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080791.1	-1	validated	p.E182K	0.017	74	0%	36	22.2%	10	20%	benign(0.002)	tolerated(0.26)	neutral(0.034)	NULL
STARD9	57519	genome.wustl.edu	37	15	42977101	42977101	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.L1061	0.986	57	0%	34	58.8%	0	-	-	-	-	NULL
ATP8B4	79895	genome.wustl.edu	37	15	50168603	50168603	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024837.2	-1	validated	p.L967I	0.235	229	0%	70	28.6%	0	-	benign(0.017)	tolerated(0.31)	neutral(0.028)	superfamily_SSF81665
RNF111	54778	genome.wustl.edu	37	15	59344632	59344632	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017610.6	+1	reviewed	e2+2	1.000	147	0%	73	90.4%	2	100%	-	-	-	-
RORA	6095	genome.wustl.edu	37	15	60792104	60792104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134260.2	-1	reviewed	p.G498V	1.000	485	0%	161	19.3%	2	0%	benign(0.361)	tolerated(0.09)	neutral(0.411)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
LOC81691	81691	genome.wustl.edu	37	16	20837226	20837226	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030941.2	+1	validated	p.D259E	1.000	322	0%	157	32.5%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
FTO	79068	genome.wustl.edu	37	16	53738099	53738120	+	Frame_Shift_Del	DEL	GAAGCGCACCCCGACTGCCGAG	GAAGCGCACCCCGACTGCCGAG	-	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	GAAGCGCACCCCGACTGCCGAG	GAAGCGCACCCCGACTGCCGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080432.2	+1	reviewed	p.K2fs	1.000:1.000:1.000:1.000:1.000:0.995:0.261:0.215:0.197:0.200:0.381:0.384:0.464:0.502:0.502:0.168:0.393:0.612:0.627:0.967:0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
CDH8	1006	genome.wustl.edu	37	16	61761039	61761039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001796.2	-1	reviewed	p.E499K	1.000	298	0.3%	72	27.8%	0	-	benign(0.167)	tolerated(0.29)	neutral(0.044)	superfamily_Cadherin
HPR	3250	genome.wustl.edu	37	16	72110565	72110565	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020995.3	+1	validated	p.S211*	0.293	198	0%	90	36.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TP53	7157	genome.wustl.edu	37	17	7577525	7577527	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.L252in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
MYH2	4620	genome.wustl.edu	37	17	10432378	10432378	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.E1125Q	1.000	160	0%	53	34%	0	-	possibly_damaging(0.755)	tolerated(0.17)	neutral(0.338)	HMMPfam_Myosin_tail_1
MYOCD	93649	genome.wustl.edu	37	17	12666635	12666635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153604.2	+1	reviewed	p.E831K	0.996	160	0%	72	36.1%	0	-	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	NULL
HDAC5	10014	genome.wustl.edu	37	17	42165910	42165910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015053.1	-1	reviewed	p.R483W	1.000	38	0%	97	20.6%	63	4.7%	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	NULL
ACSF2	80221	genome.wustl.edu	37	17	48551099	48551099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025149.4	+1	validated	p.G517S	1.000	133	0%	599	20.2%	45	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_SSF56801
SDK2	54549	genome.wustl.edu	37	17	71431667	71431667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144952.1	-1	provisional	p.D373Y	1.000	38	0%	91	39.6%	2	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ZFP161	7541	genome.wustl.edu	37	18	5292192	5292192	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143823.1	-1	validated	p.I5	1.000	31	0%	30	76.7%	10	100%	-	-	-	NULL
PIEZO2	63895	genome.wustl.edu	37	18	10696220	10696220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503781	-1	known	p.V192L	1.000	104	0%	34	20.6%	1	0%	benign(0.164)	tolerated(0.78)	neutral(0.016)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42618514	42618514	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015559.2	+1	validated	p.V1355	0.000	302	0%	256	13.7%	6	16.6%	-	-	-	NULL
FBXL12	54850	genome.wustl.edu	37	19	9921763	9921763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017703.1	-1	provisional	p.V264I	0.000	144	0%	384	12.2%	55	14.5%	benign(0)	tolerated(0.79)	neutral(0.001)	superfamily_RNI-like
FBXL12	54850	genome.wustl.edu	37	19	9922308	9922308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017703.1	-1	provisional	p.S82F	0.343	24	0%	68	17.6%	66	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNI-like
ILVBL	10994	genome.wustl.edu	37	19	15234039	15234039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006844.3	-1	reviewed	p.A118V	0.985	32	0%	93	22.6%	66	16.6%	benign(0.288)	tolerated(0.1)	neutral(0.375)	HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
GMIP	51291	genome.wustl.edu	37	19	19740999	19740999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016573.2	-1	reviewed	p.E896K	0.622	43	0%	83	21.7%	24	8.3%	benign(0.425)	deleterious(0)	deleterious(0.583)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31770270	31770270	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.S143	0.280	300	0%	305	23%	0	-	-	-	-	NULL
SRRM5	100170229	genome.wustl.edu	37	19	44116872	44116872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145641.1	+1	validated	p.G200V	0.018	125	0%	248	23%	1	100%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
ZNF180	7733	genome.wustl.edu	37	19	44982013	44982013	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013256.3	-1	validated	p.L229V	0.000	121	0%	164	48.2%	7	14.2%	benign(0.006)	tolerated(0.5)	neutral(0.010)	NULL
FPR3	2359	genome.wustl.edu	37	19	52327703	52327703	+	Silent	SNP	T	T	A	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002030.3	+1	validated	p.I234	0.608	455	0%	250	19.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF610	162963	genome.wustl.edu	37	19	52869936	52869936	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173530.2	+1	validated	p.K435N	0.097	170	0%	176	28.4%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SAMSN1	64092	genome.wustl.edu	37	21	15893508	15893508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022136.3	-1	validated	p.R31Q	1.000	106	0%	42	45.2%	2	0%	probably_damaging(0.997)	tolerated(0.21)	deleterious(0.510)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41385072	41385072	+	Silent	SNP	T	T	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.G1976	0.303	89	0%	62	24.2%	0	-	-	-	-	NULL
GPR143	4935	genome.wustl.edu	37	X	9727401	9727401	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447366	-1	known	p.S78P	0.980	128	0%	171	31%	8	50%	-	-	-	HMMPfam_Ocular_alb
GK	2710	genome.wustl.edu	37	X	30709281	30709281	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128127.1	+1	reviewed	p.S127R	1.000	141	0%	112	18.8%	1	100%	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMPfam_FGGY_N,superfamily_SSF53067
FLNA	2316	genome.wustl.edu	37	X	153582383	153582383	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZZ-01A-11D-A10M-09	TCGA-D1-A0ZZ-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.Y1862*	0.443	126	0%	183	89.6%	29	68.9%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
