Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NADK	65220	genome.wustl.edu	37	1	1685086	1685086	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023018.3	-1	validated	p.I368	0.999	63	0%	36	16.7%	91	30.7%	-	-	-	HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)
ACTRT2	140625	genome.wustl.edu	37	1	2939371	2939371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080431.4	+1	reviewed	p.R374I	1.000	82	0%	60	25%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PRDM16	63976	genome.wustl.edu	37	1	3313069	3313069	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022114.3	+1	reviewed	p.V196	1.000	139	0%	90	17.8%	0	-	-	-	-	HMMSmart_SM00317,superfamily_SET domain
NPHP4	261734	genome.wustl.edu	37	1	5926462	5926462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015102.2	-1	reviewed	p.E1205D	0.994	95	0%	72	11.1%	9	11.1%	possibly_damaging(0.544)	tolerated(0.2)	neutral(0.233)	NULL
RNF207	388591	genome.wustl.edu	37	1	6271107	6271107	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207396.2	+1	validated	p.F346	0.991	26	0%	20	20%	13	15.3%	-	-	-	NULL
PIK3CD	5293	genome.wustl.edu	37	1	9777681	9777681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005026.3	+1	validated	p.M339I	1.000	144	0%	114	33.3%	12	8.3%	benign(0.039)	tolerated(0.22)	neutral(0.044)	HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
TARDBP	23435	genome.wustl.edu	37	1	11077011	11077011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007375.3	+1	reviewed	p.E117K	1.000	205	0%	212	22.6%	15	20%	possibly_damaging(0.704)	deleterious(0)	deleterious(0.698)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MTOR	2475	genome.wustl.edu	37	1	11189845	11189845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.F1888L	1.000	156	0%	115	25.2%	72	37.5%	possibly_damaging(0.476)	deleterious(0.01)	deleterious(0.562)	HMMPfam_FAT,superfamily_ARM-type_fold
C1orf187	374946	genome.wustl.edu	37	1	11766689	11766689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198545.3	+1	validated	p.R125Q	0.004	40	0%	41	22%	1	0%	benign(0.011)	tolerated(0.42)	neutral(0.015)	NULL
MTHFR	4524	genome.wustl.edu	37	1	11860307	11860307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005957.4	-1	reviewed	p.R183Q	1.000	197	0%	162	27.8%	11	36.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_MTHFR,superfamily_FAD-linked oxidoreductase
VPS13D	55187	genome.wustl.edu	37	1	12364627	12364627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015378.2	+1	reviewed	p.T2094M	0.000	105	0%	107	14%	1	0%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12371534	12371534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015378.2	+1	reviewed	p.D2225G	1.000	87	0%	98	12.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRAMEF12	390999	genome.wustl.edu	37	1	12835917	12835917	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080830.1	+1	provisional	p.K173N	0.000	319	0%	246	16.3%	0	-	benign(0.012)	deleterious(0.01)	neutral(0.406)	superfamily_SSF52047
ARHGEF19	128272	genome.wustl.edu	37	1	16531378	16531378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153213.3	-1	provisional	p.R595W	1.000	51	0%	27	14.8%	83	38.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARHGEF10L	55160	genome.wustl.edu	37	1	17945930	17945930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018125.3	+1	validated	p.S311N	1.000	21	0%	16	25%	20	50%	possibly_damaging(0.872)	deleterious(0.01)	deleterious(0.745)	superfamily_DBL homology domain (DH-domain)
IGSF21	84966	genome.wustl.edu	37	1	18703297	18703297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032880.3	+1	validated	p.E369K	1.000	33	0%	34	20.6%	0	-	possibly_damaging(0.81)	tolerated(0.07)	deleterious(0.624)	HMMSmart_IG,superfamily_SSF48726
ALDH4A1	8659	genome.wustl.edu	37	1	19199402	19199402	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003748.3	-1	reviewed	p.S543	0.290	110	0%	76	13.2%	28	28.5%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
EIF4G3	8672	genome.wustl.edu	37	1	21154190	21154190	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.E1341*	1.000	115	0%	100	17%	3	0%	-	-	-	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21268653	21268653	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.R276*	0.689	234	0%	214	19.6%	15	6.6%	-	-	-	NULL
NBPF3	84224	genome.wustl.edu	37	1	21800014	21800014	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032264.2	+1	validated	p.V292	0.000	440	0.2%	320	26.3%	5	40%	-	-	-	HMMPfam_DUF1220
RHD	6007	genome.wustl.edu	37	1	25617161	25617161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016124.3	+1	reviewed	p.S122L	0.003	485	0.2%	322	20.5%	0	-	possibly_damaging(0.598)	deleterious(0.01)	deleterious(0.613)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
UBXN11	91544	genome.wustl.edu	37	1	26620710	26620710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183008.2	-1	reviewed	p.K182T	1.000	136	0%	80	27.5%	44	59%	probably_damaging(0.998)	tolerated(0.5)	deleterious(0.484)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.R1989*	1.000	155	0%	126	13.5%	74	31%	-	-	-	NULL
PTAFR	5724	genome.wustl.edu	37	1	28476507	28476507	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000952.4	-1	validated	p.N342K	0.352	58	0%	47	12.8%	10	20%	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
SNRNP40	9410	genome.wustl.edu	37	1	31762266	31762266	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004814.2	-1	reviewed	p.S122	1.000	150	0%	164	36%	103	48.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TINAGL1	64129	genome.wustl.edu	37	1	32050329	32050329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022164.2	+1	validated	p.E211D	0.987	68	0%	72	36.1%	59	49.1%	benign(0.004)	tolerated(0.66)	neutral(0.003)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
BSDC1	55108	genome.wustl.edu	37	1	32832252	32832252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143888.1	-1	validated	p.E439K	1.000	30	0%	22	22.7%	37	13.5%	possibly_damaging(0.927)	deleterious(0.01)	deleterious(0.780)	NULL
SYNC	81493	genome.wustl.edu	37	1	33161204	33161204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030786.2	-1	reviewed	p.E165D	0.426	138	0%	95	29.5%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35453320	35453320	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007167.3	-1	validated	p.S1121	1.000	67	0%	86	27.9%	0	-	-	-	-	NULL
EIF2C3	192669	genome.wustl.edu	37	1	36505935	36505935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024852.2	+1	reviewed	p.R689*	1.000	133	1.5%	145	20%	2	50%	-	-	-	HMMPfam_Piwi,superfamily_RNaseH_fold
CSF3R	1441	genome.wustl.edu	37	1	36932415	36932415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_156039.2	-1	reviewed	p.L712P	1.000	38	0%	33	18.2%	9	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
GRIK3	2899	genome.wustl.edu	37	1	37282846	37282846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000831.3	-1	reviewed	p.R636C	0.927	138	0%	156	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
SF3A3	10946	genome.wustl.edu	37	1	38453296	38453296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006802.2	-1	reviewed	p.F84L	1.000	137	0%	104	26.9%	3	66.6%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
GJA9	81025	genome.wustl.edu	37	1	39340268	39340268	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030772.3	-1	provisional	p.T501	0.936	89	0%	101	24.8%	0	-	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39800731	39800731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.E1264G	0.555	158	0%	174	29.3%	0	-	benign(0)	-	-	superfamily_SSF75399
MACF1	23499	genome.wustl.edu	37	1	39898788	39898788	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372925	+1	known	p.L2784I	1.000	208	0%	173	35.3%	7	28.5%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39908227	39908227	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372925	+1	known	p.R3309C	0.014	41	0%	39	30.8%	15	40%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SMAP2	64744	genome.wustl.edu	37	1	40872452	40872452	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022733.1	+1	provisional	p.R50*	1.000	109	0%	111	35.1%	24	20.8%	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
SLFNL1	200172	genome.wustl.edu	37	1	41481811	41481811	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144990.3	-1	validated	p.H397	0.000	55	0%	57	22.8%	3	0%	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42050260	42050260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024503.3	-1	validated	p.S70F	1.000	93	0%	95	18.9%	0	-	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	PatternScan_AIPM_HOMOCIT_SYNTH_1
WDR65	149465	genome.wustl.edu	37	1	43647376	43647376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152498.3	+1	validated	p.F110C	0.996	133	0%	129	23.3%	1	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_WD40_like
ST3GAL3	6487	genome.wustl.edu	37	1	44303915	44303915	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174963.2	+1	reviewed	p.Y147	0.991	102	0%	96	42.7%	2	50%	-	-	-	NULL
PIK3R3	8503	genome.wustl.edu	37	1	46597552	46597552	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114172.1	-1	validated	p.E25*	1.000	130	0%	150	16.7%	24	45.8%	-	-	-	NULL
LURAP1	541468	genome.wustl.edu	37	1	46685389	46685389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013615.2	+1	validated	p.D73N	1.000	57	0%	47	23.4%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BEND5	79656	genome.wustl.edu	37	1	49193581	49193581	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024603.2	-1	validated	p.E415*	1.000	481	0.2%	428	32%	0	-	-	-	-	NULL
FAF1	11124	genome.wustl.edu	37	1	50941250	50941250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007051.2	-1	reviewed	p.F585L	1.000	80	0%	74	31.1%	13	30.7%	benign(0.16)	tolerated(0.36)	neutral(0.035)	HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like
FAF1	11124	genome.wustl.edu	37	1	50957422	50957422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007051.2	-1	reviewed	p.R516C	1.000	232	0%	238	16.8%	41	21.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52704341	52704341	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004799.2	+1	reviewed	p.E418*	1.000	56	0%	39	25.6%	6	0%	-	-	-	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52747450	52747450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004799.2	+1	reviewed	p.F996C	1.000	181	0%	193	19.2%	9	66.6%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	NULL
ORC1	4998	genome.wustl.edu	37	1	52859241	52859241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004153.2	-1	reviewed	p.R319I	0.994	353	0%	319	30.1%	1	0%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52940803	52940803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009881.1	-1	validated	p.P810T	0.984	157	0%	186	17.7%	2	0%	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
SLC1A7	6512	genome.wustl.edu	37	1	53556427	53556427	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006671.4	-1	validated	p.I361	0.559	84	0%	66	24.2%	0	-	-	-	-	HMMPfam_SDF
HSPB11	51668	genome.wustl.edu	37	1	54387365	54387365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016126.2	-1	provisional	p.V132I	0.049	191	0%	163	24.5%	19	15.7%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
HEATR8	374977	genome.wustl.edu	37	1	55139740	55139740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039464.2	+1	validated	p.H618Y	0.985	178	0%	162	32.1%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_ARM repeat
BSND	7809	genome.wustl.edu	37	1	55472814	55472814	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057176.2	+1	reviewed	p.P139	0.000	57	0%	59	16.9%	0	-	-	-	-	NULL
OMA1	115209	genome.wustl.edu	37	1	58971763	58971763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145243.3	-1	provisional	p.R445Q	1.000	213	0%	170	11.2%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M48
C1orf87	127795	genome.wustl.edu	37	1	60505660	60505660	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152377.1	-1	predicted	p.E226*	0.011	152	0%	200	32%	0	-	-	-	-	superfamily_EF-hand
KANK4	163782	genome.wustl.edu	37	1	62739623	62739623	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181712.4	-1	validated	p.R385*	0.743	167	0%	148	23.6%	1	0%	-	-	-	NULL
ROR1	4919	genome.wustl.edu	37	1	64515641	64515641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005012.2	+1	validated	p.V148I	1.000	139	0%	89	19.1%	2	0%	probably_damaging(0.982)	deleterious(0.05)	deleterious(0.772)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LEPR	3953	genome.wustl.edu	37	1	66102247	66102247	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002303.4	+1	reviewed	p.K1016T	0.001	50	0%	69	33.3%	0	-	benign(0.077)	deleterious(0.03)	neutral(0.370)	NULL
INSL5	10022	genome.wustl.edu	37	1	67263855	67263855	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005478.3	-1	reviewed	p.P83	0.000	132	0%	113	22.1%	1	100%	-	-	-	HMMSmart_IlGF,superfamily_Insulin-like
MIR1262	100302279	genome.wustl.edu	37	1	68649229	68649229	+	RNA	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408276	-1	known	NULL	0.000	176	0%	164	15.9%	0	-	-	-	-	-
LRRC7	57554	genome.wustl.edu	37	1	70226019	70226019	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.F44	0.999	178	0.6%	138	28.3%	0	-	-	-	-	superfamily_L domain-like
LRRC40	55631	genome.wustl.edu	37	1	70644664	70644664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017768.4	-1	validated	p.L225S	1.000	86	0%	120	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,superfamily_SSF52058
LRRC40	55631	genome.wustl.edu	37	1	70652957	70652957	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017768.4	-1	validated	p.L133R	1.000	179	0%	201	17.4%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,superfamily_SSF52058
LRRIQ3	127255	genome.wustl.edu	37	1	74540390	74540390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105659.1	-1	provisional	p.D318Y	0.962	205	0%	225	28.4%	0	-	unknown(0)	-	-	NULL
C1orf173	127254	genome.wustl.edu	37	1	75097441	75097441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002912.4	-1	validated	p.R259C	0.998	465	0%	464	19.8%	1	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MSH4	4438	genome.wustl.edu	37	1	76343984	76343984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.E507D	1.000	188	0%	154	19.5%	0	-	possibly_damaging(0.672)	deleterious(0)	deleterious(0.682)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
ZZZ3	26009	genome.wustl.edu	37	1	78098546	78098546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015534.4	-1	provisional	p.R165Q	1.000	208	0.5%	192	34.9%	5	80%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
LPHN2	23266	genome.wustl.edu	37	1	82402423	82402423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012302.2	+1	reviewed	p.R100Q	1.000	381	0%	269	32%	14	35.7%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Gal_Lectin
TTLL7	79739	genome.wustl.edu	37	1	84412924	84412924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024686.4	-1	validated	p.R130Q	1.000	261	0%	250	28.8%	0	-	benign(0.309)	tolerated(0.1)	neutral(0.383)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
RPF1	80135	genome.wustl.edu	37	1	84961130	84961130	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025065.6	+1	validated	p.E231*	1.000	188	0%	199	16.1%	7	0%	-	-	-	HMMPfam_Brix
C1orf52	148423	genome.wustl.edu	37	1	85718341	85718341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198077.3	-1	validated	p.P174S	1.000	372	0%	346	22.3%	8	25%	benign(0.013)	tolerated(0.99)	neutral(0.001)	NULL
ZNHIT6	54680	genome.wustl.edu	37	1	86171989	86171989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017953.3	-1	validated	p.R258*	0.999	363	0%	323	34.1%	3	33.3%	-	-	-	NULL
CLCA2	9635	genome.wustl.edu	37	1	86913199	86913199	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006536.5	+1	reviewed	p.H574	0.729	84	0%	86	22.1%	0	-	-	-	-	HMMPfam_DUF1973
GBP3	2635	genome.wustl.edu	37	1	89477439	89477439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018284.2	-1	reviewed	p.K380N	0.373	95	0%	97	21.6%	6	33.3%	benign(0.16)	tolerated(0.13)	neutral(0.267)	HMMPfam_GBP_C,superfamily_GBP
GBP5	115362	genome.wustl.edu	37	1	89730585	89730585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134486.1	-1	validated	p.E311D	0.997	184	0%	125	20.8%	27	14.8%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
LRRC8D	55144	genome.wustl.edu	37	1	90399282	90399282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134479.1	+1	validated	p.E219K	1.000	67	0%	74	10.8%	5	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90400674	90400674	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134479.1	+1	validated	p.K683Q	1.000	83	0%	105	33.3%	7	57.1%	benign(0.046)	tolerated(0.32)	neutral(0.026)	superfamily_SSF52058
EPHX4	253152	genome.wustl.edu	37	1	92518159	92518159	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173567.4	+1	validated	p.V267	0.479	178	0%	195	9.7%	0	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
RPL5	6125	genome.wustl.edu	37	1	93303039	93303039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000969.3	+1	reviewed	p.S185F	1.000	158	0%	161	16.8%	2017	30.6%	benign(0.403)	tolerated(0.07)	neutral(0.449)	superfamily_Translational machinery components
ABCA4	24	genome.wustl.edu	37	1	94526126	94526126	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.S709	0.018	103	0%	76	18.4%	0	-	-	-	-	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94639452	94639452	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004815.3	-1	validated	p.L1253	0.911	102	0%	95	11.6%	1	0%	-	-	-	NULL
SLC44A3	126969	genome.wustl.edu	37	1	95358065	95358065	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114106.1	+1	validated	p.E617*	1.000	267	0%	251	18.3%	9	33.3%	-	-	-	HMMPfam_DUF580
TMEM56	148534	genome.wustl.edu	37	1	95609537	95609537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152487.2	+1	validated	p.S27N	0.999	317	0%	339	28.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SASS6	163786	genome.wustl.edu	37	1	100572978	100572978	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194292.1	-1	validated	p.Q426	0.886	153	0%	151	18.5%	0	-	-	-	-	NULL
DBT	1629	genome.wustl.edu	37	1	100676260	100676260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001918.2	-1	reviewed	p.I336R	1.000	309	0%	314	29.3%	1	100%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases
CDC14A	8556	genome.wustl.edu	37	1	100949997	100949997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033312.2	+1	reviewed	p.R376Q	0.998	148	0%	128	33.6%	3	33.3%	benign(0.034)	tolerated(0.18)	neutral(0.058)	NULL
VCAM1	7412	genome.wustl.edu	37	1	101198147	101198147	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078.2	+1	reviewed	p.I567L	0.000	55	0%	64	29.7%	0	-	benign(0.006)	tolerated(0.77)	neutral(0.001)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SLC25A24	29957	genome.wustl.edu	37	1	108703869	108703869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013386.3	-1	validated	p.D149N	1.000	206	0%	186	16.7%	11	18.1%	benign(0.085)	deleterious(0.03)	neutral(0.370)	superfamily_EF-hand
SLC6A17	388662	genome.wustl.edu	37	1	110740725	110740725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010898.2	+1	validated	p.N615H	1.000	88	0%	51	29.4%	0	-	benign(0.186)	tolerated(0.25)	neutral(0.054)	HMMPfam_SNF
KCNA3	3738	genome.wustl.edu	37	1	111216985	111216985	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002232.3	-1	reviewed	p.F149	1.000	35	0%	37	16.2%	1	0%	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCND3	3752	genome.wustl.edu	37	1	112323370	112323370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004980.3	-1	reviewed	p.S438L	1.000	78	0%	60	31.7%	1	100%	benign(0.045)	deleterious(0.02)	neutral(0.386)	NULL
WNT2B	7482	genome.wustl.edu	37	1	113057617	113057617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024494.2	+1	reviewed	p.E102K	1.000	59	0%	40	40%	2	100%	possibly_damaging(0.659)	tolerated(0.68)	neutral(0.235)	HMMPfam_wnt,HMMSmart_SM00097
ST7L	54879	genome.wustl.edu	37	1	113126649	113126649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017744.4	-1	reviewed	p.I267M	1.000	236	0%	206	21.4%	4	50%	probably_damaging(0.978)	tolerated(0.23)	neutral(0.462)	HMMPfam_ST7
LOC128322	128322	genome.wustl.edu	37	1	113290846	113290846	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_060943.1	+1	model	p.R44*	1.000	38	0%	34	14.7%	0	-	-	-	-	HMMPfam_NTF2,superfamily_NTF2-like
MAGI3	260425	genome.wustl.edu	37	1	114165484	114165484	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142782.1	+1	validated	p.R410*	0.978	258	0%	236	33.1%	3	0%	-	-	-	HMMPfam_PDZ,superfamily_PDZ
PTPN22	26191	genome.wustl.edu	37	1	114380974	114380974	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015967.4	-1	reviewed	p.E350*	0.001	495	0%	425	29.9%	2	0%	-	-	-	NULL
TRIM33	51592	genome.wustl.edu	37	1	114973522	114973522	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015906.3	-1	reviewed	p.V351	1.000	377	0%	316	17.1%	0	-	-	-	-	HMMSmart_SM00502
GDAP2	54834	genome.wustl.edu	37	1	118439577	118439577	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017686.3	-1	validated	p.V277	0.992	204	0%	213	21.6%	4	50%	-	-	-	NULL
GJA8	2703	genome.wustl.edu	37	1	147380898	147380898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005267.4	+1	reviewed	p.E272D	1.000	55	0%	85	29.4%	0	-	benign(0.021)	tolerated(0.24)	neutral(0.038)	HMMPfam_Connexin50
MTMR11	10903	genome.wustl.edu	37	1	149906973	149906973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181873.3	-1	validated	p.K53T	1.000	36	0%	45	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF50729
PRPF3	9129	genome.wustl.edu	37	1	150318904	150318904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004698.2	+1	reviewed	p.F594V	1.000	151	0%	156	29.5%	17	58.8%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_PRP3
GABPB2	126626	genome.wustl.edu	37	1	151065743	151065743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144618.2	+1	validated	p.D118Y	1.000	198	0%	168	23.8%	7	14.2%	benign(0.382)	deleterious(0.02)	deleterious(0.505)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PIP5K1A	8394	genome.wustl.edu	37	1	151204767	151204767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135638.1	+1	validated	p.R138C	1.000	333	0%	271	31.4%	45	42.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00330,superfamily_SAICAR synthase-like
RORC	6097	genome.wustl.edu	37	1	151780029	151780029	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005060.3	-1	reviewed	p.I492	0.940	122	0%	133	12.8%	23	0%	-	-	-	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
HRNR	388697	genome.wustl.edu	37	1	152193663	152193663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.L148I	0.000	167	0%	213	21.1%	0	-	benign(0.126)	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152282835	152282835	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.V1509	0.001	447	0%	343	29.7%	0	-	-	-	-	NULL
CRNN	49860	genome.wustl.edu	37	1	152383193	152383193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016190.2	-1	reviewed	p.E122A	0.004	102	0%	84	13.1%	0	-	benign(0.101)	tolerated(0.73)	neutral(0.009)	NULL
KPRP	448834	genome.wustl.edu	37	1	152732460	152732460	+	Silent	SNP	C	C	T	rs146826460	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025231.1	+1	provisional	p.F132	0.032	166	0%	136	19.9%	0	-	-	-	-	NULL
S100A12	6283	genome.wustl.edu	37	1	153346500	153346500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368736	-1	known	p.K52N	0.000	81	0%	81	19.8%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_SSF47473
CHTOP	26097	genome.wustl.edu	37	1	153615768	153615768	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015607.2	+1	provisional	p.R157*	1.000	181	0%	183	37.2%	69	2.8%	-	-	-	NULL
TPM3	7170	genome.wustl.edu	37	1	154143145	154143145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152263.2	-1	reviewed	p.L229I	1.000	235	0%	254	37.8%	92	55.4%	benign(0.328)	deleterious(0.01)	deleterious(0.509)	HMMPfam_Tropomyosin
ASH1L	55870	genome.wustl.edu	37	1	155450046	155450046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.I872S	1.000	132	0%	149	12.1%	2	0%	benign(0.037)	tolerated(0.24)	neutral(0.040)	NULL
ISG20L2	81875	genome.wustl.edu	37	1	156693997	156693997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030980.1	-1	provisional	p.E297D	0.995	175	0%	125	28%	31	45.1%	possibly_damaging(0.873)	tolerated(0.11)	deleterious(0.611)	HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T
HDGF	3068	genome.wustl.edu	37	1	156714904	156714904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126050.1	-1	reviewed	p.E83K	1.000	139	0%	120	10.8%	89	4.4%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_PWWP,superfamily_SSF63748
INSRR	3645	genome.wustl.edu	37	1	156814386	156814386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014215.1	-1	validated	p.R869*	0.453	43	0%	52	26.9%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PEAR1	375033	genome.wustl.edu	37	1	156880120	156880120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080471.1	+1	provisional	p.E591D	0.002	58	0%	33	18.2%	1	100%	benign(0.136)	tolerated(0.59)	neutral(0.016)	HMMSmart_EGF,HMMPfam_EGF_2
LRRC71	149499	genome.wustl.edu	37	1	156902271	156902271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144702.2	+1	validated	p.Q499H	0.996	67	0%	39	15.4%	22	31.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_RNI-like
CD1E	913	genome.wustl.edu	37	1	158325110	158325110	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030893.2	+1	reviewed	p.L126	0.015	115	0%	110	22.7%	0	-	-	-	-	superfamily_MHC antigen-recognition domain
OR10T2	128360	genome.wustl.edu	37	1	158368817	158368817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004475.1	-1	provisional	p.S147Y	0.005	95	0%	83	22.9%	0	-	possibly_damaging(0.513)	tolerated(0.17)	neutral(0.231)	HMMPfam_7tm_1,superfamily_SSF81321
OR10X1	128367	genome.wustl.edu	37	1	158548992	158548992	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004477.1	-1	provisional	p.T233S	0.850	160	0%	84	17.9%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	HMMPfam_7tm_1,superfamily_SSF81321
MNDA	4332	genome.wustl.edu	37	1	158812191	158812191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002432.1	+1	reviewed	p.R83Q	0.000	122	0%	135	31.1%	0	-	benign(0.236)	deleterious(0.02)	neutral(0.407)	HMMPfam_PAAD_DAPIN
DARC	2532	genome.wustl.edu	37	1	159175365	159175365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122951.1	+1	reviewed	p.E48K	0.001	126	0%	57	42.1%	20	0%	possibly_damaging(0.46)	deleterious(0.04)	deleterious(0.500)	NULL
FCER1A	2205	genome.wustl.edu	37	1	159273839	159273839	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002001.2	+1	reviewed	p.H66	0.666	108	0%	88	27.3%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
IGSF9	57549	genome.wustl.edu	37	1	159901259	159901259	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.T499	0.000	56	0%	43	23.3%	34	61.7%	-	-	-	superfamily_SSF48726
CASQ1	844	genome.wustl.edu	37	1	160165306	160165306	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001231.4	+1	reviewed	p.F205	1.000	204	0%	148	15.5%	0	-	-	-	-	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
LY9	4063	genome.wustl.edu	37	1	160769745	160769745	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002348.2	+1	validated	p.I109	0.001	127	0%	82	14.6%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
CD244	51744	genome.wustl.edu	37	1	160801181	160801181	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016382.3	-1	reviewed	p.R352*	0.011	174	0%	191	34.6%	0	-	-	-	-	NULL
ATF6	22926	genome.wustl.edu	37	1	161833097	161833097	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.R572*	1.000	206	0%	192	19.3%	36	11.1%	-	-	-	NULL
HSD17B7	51478	genome.wustl.edu	37	1	162775260	162775260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016371.2	+1	validated	p.R294I	0.009	235	0%	176	10.2%	0	-	benign(0.156)	tolerated(0.1)	neutral(0.300)	NULL
LMX1A	4009	genome.wustl.edu	37	1	165175228	165175228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177398.3	-1	validated	p.M287I	1.000	147	0%	119	27.7%	0	-	benign(0.009)	deleterious(0.04)	neutral(0.349)	NULL
DCAF6	55827	genome.wustl.edu	37	1	167956812	167956812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018442.2	+1	validated	p.I173T	1.000	221	0%	227	21.1%	28	39.2%	benign(0.011)	tolerated(0.69)	neutral(0.003)	superfamily_WD40_like
GPR161	23432	genome.wustl.edu	37	1	168066065	168066065	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153832.1	-1	provisional	p.V260	0.989	49	0%	33	42.4%	12	50%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DPT	1805	genome.wustl.edu	37	1	168665805	168665805	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001937.3	-1	reviewed	p.C196	0.941	269	0%	195	29.2%	0	-	-	-	-	NULL
F5	2153	genome.wustl.edu	37	1	169487731	169487731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.K2088N	0.983	388	0%	392	27.3%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
SELP	6403	genome.wustl.edu	37	1	169578790	169578790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003005.3	-1	reviewed	p.R429W	0.000	124	0%	105	17.1%	2	0%	benign(0.022)	deleterious(0.01)	neutral(0.407)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
TNR	7143	genome.wustl.edu	37	1	175325554	175325554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003285.2	-1	validated	p.R1007W	1.000	243	0%	168	38.1%	0	-	possibly_damaging(0.893)	deleterious(0.03)	deleterious(0.716)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ASTN1	460	genome.wustl.edu	37	1	176857271	176857271	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004319.1	-1	validated	p.R1004*	1.000	103	0%	85	38.8%	2	0%	-	-	-	NULL
SOAT1	6646	genome.wustl.edu	37	1	179322776	179322776	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003101.4	+1	provisional	p.*551Y	1.000	400	0%	386	26.7%	18	44.4%	-	-	-	NULL
AXDND1	126859	genome.wustl.edu	37	1	179351863	179351863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144696.4	+1	validated	p.E204*	1.000	211	0%	196	36.2%	0	-	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180049679	180049679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.S2003P	0.999	142	0%	143	16.1%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CEP350	9857	genome.wustl.edu	37	1	180061964	180061964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.L2242I	0.001	75	0%	71	9.9%	0	-	possibly_damaging(0.521)	tolerated(0.16)	neutral(0.235)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181702853	181702853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.V1077M	0.984	18	5.6%	12	41.7%	0	-	benign(0.005)	deleterious(0.03)	neutral(0.364)	superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181750634	181750634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.R1780I	1.000	65	0%	64	23.4%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
GLUL	2752	genome.wustl.edu	37	1	182356278	182356278	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033044.2	-1	reviewed	p.R106*	1.000	100	0%	72	12.5%	147	0.6%	-	-	-	superfamily_Glutamine synthetase N-terminal domain
LAMC2	3918	genome.wustl.edu	37	1	183200138	183200138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005562.2	+1	reviewed	p.R586Q	0.871	313	0%	229	23.1%	193	31%	benign(0.402)	tolerated(0.7)	neutral(0.131)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181
HMCN1	83872	genome.wustl.edu	37	1	185878628	185878628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.R261C	1.000	322	0%	299	23.1%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
HMCN1	83872	genome.wustl.edu	37	1	185892647	185892647	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.R383*	0.986	339	0%	333	29.4%	0	-	-	-	-	NULL
HMCN1	83872	genome.wustl.edu	37	1	185939559	185939559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.D769N	0.998	200	0%	194	19.1%	0	-	probably_damaging(0.98)	tolerated(0.5)	neutral(0.434)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TPR	7175	genome.wustl.edu	37	1	186337033	186337033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.L138F	1.000	455	0%	385	27.3%	0	-	benign(0.308)	deleterious(0.01)	deleterious(0.502)	NULL
PLA2G4A	5321	genome.wustl.edu	37	1	186919790	186919790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024420.2	+1	reviewed	p.E422D	1.000	34	0%	37	35.1%	8	12.5%	probably_damaging(0.992)	tolerated(0.36)	neutral(0.468)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
CFH	3075	genome.wustl.edu	37	1	196714946	196714946	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000186.3	+1	reviewed	e21-1	0.448	321	0.6%	267	10.5%	0	-	-	-	-	-
ASPM	259266	genome.wustl.edu	37	1	197055972	197055972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.F3431C	0.971	329	0%	304	30.9%	0	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	NULL
ASPM	259266	genome.wustl.edu	37	1	197072076	197072076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.S2102Y	1.000	94	0%	93	24.7%	1	100%	possibly_damaging(0.691)	deleterious(0)	deleterious(0.692)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197073079	197073079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.R1768W	0.000	97	0%	113	22.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF14	9928	genome.wustl.edu	37	1	200562829	200562829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014875.2	-1	validated	p.G873E	1.000	360	0%	345	25.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA
NAV1	89796	genome.wustl.edu	37	1	201762974	201762974	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020443.4	+1	reviewed	p.R1126*	1.000	140	0%	114	32.5%	8	0%	-	-	-	NULL
ATP2B4	493	genome.wustl.edu	37	1	203667374	203667374	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001684.3	+1	reviewed	p.E95*	1.000	171	0.6%	181	24.3%	3	0%	-	-	-	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
PIK3C2B	5287	genome.wustl.edu	37	1	204394825	204394825	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002646.3	-1	reviewed	p.I1544M	0.997	468	0%	414	20.3%	3	33.3%	benign(0.375)	tolerated(0.09)	neutral(0.416)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NFASC	23114	genome.wustl.edu	37	1	204956555	204956555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.A930V	1.000	200	0%	216	22.7%	0	-	benign(0.002)	tolerated(0.6)	neutral(0.004)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SLC26A9	115019	genome.wustl.edu	37	1	205895723	205895723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134325.2	-1	reviewed	p.K443N	1.000	233	0%	206	35%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfate_transp
SRGAP2	23380	genome.wustl.edu	37	1	206589255	206589255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414359	+1	known	p.K378Q	1.000	96	0%	92	40.2%	2	0%	probably_damaging(0.974)	tolerated(0.35)	neutral(0.436)	NULL
FCAMR	83953	genome.wustl.edu	37	1	207133097	207133097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122979.2	-1	validated	p.S233Y	0.022	210	0%	146	10.3%	0	-	unknown(0)	-	-	NULL
CD55	1604	genome.wustl.edu	37	1	207498083	207498083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114752.1	+1	reviewed	p.E156K	0.027	121	0%	116	19.8%	22	22.7%	possibly_damaging(0.869)	deleterious(0.03)	deleterious(0.702)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
HSD11B1	3290	genome.wustl.edu	37	1	209905842	209905842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005525.2	+1	reviewed	p.F193L	0.998	361	0%	249	20.5%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
C1orf74	148304	genome.wustl.edu	37	1	209956246	209956246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152485.2	-1	predicted	p.R245Q	0.001	101	0%	92	22.8%	1	100%	benign(0.036)	tolerated(0.17)	neutral(0.061)	NULL
SLC30A1	7779	genome.wustl.edu	37	1	211749439	211749439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021194.2	-1	validated	p.S272Y	0.997	97	0%	80	28.7%	9	44.4%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Cation_efflux
USH2A	7399	genome.wustl.edu	37	1	215955471	215955471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.F3551L	0.935	174	0%	161	33.5%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215987234	215987234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.G3195R	0.645	187	0%	177	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00060,superfamily_Fibronectin type III
SPATA17	128153	genome.wustl.edu	37	1	217975157	217975157	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138796.2	+1	provisional	p.R324	0.996	176	0%	186	31.2%	4	75%	-	-	-	NULL
IARS2	55699	genome.wustl.edu	37	1	220320949	220320949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018060.3	+1	validated	p.R1004Q	0.971	159	0%	158	20.3%	58	18.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_zf-FPG_IleRS
DUSP10	11221	genome.wustl.edu	37	1	221875889	221875889	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007207.3	-1	reviewed	p.V438	1.000	266	0%	228	17.5%	24	20.8%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
DUSP10	11221	genome.wustl.edu	37	1	221912353	221912353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007207.3	-1	reviewed	p.R245Q	1.000	207	0%	169	29.6%	13	53.8%	possibly_damaging(0.512)	tolerated(0.55)	neutral(0.179)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
HHIPL2	79802	genome.wustl.edu	37	1	222716939	222716939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024746.3	-1	validated	p.R305Q	0.999	105	0%	90	17.8%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	superfamily_Quino_gluc_DH
CAPN2	824	genome.wustl.edu	37	1	223905507	223905507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001748.4	+1	reviewed	p.R94H	1.000	73	0%	57	14%	22	4.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
DNAH14	127602	genome.wustl.edu	37	1	225142781	225142781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.L66F	0.077	118	0%	135	17%	0	-	probably_damaging(0.991)	tolerated(0.1)	deleterious(0.730)	NULL
DNAH14	127602	genome.wustl.edu	37	1	225230773	225230773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.K575N	0.000	89	0%	126	23.8%	0	-	unknown(0)	deleterious(0)	-	NULL
ENAH	55740	genome.wustl.edu	37	1	225742715	225742715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008493.1	-1	validated	p.R81Q	1.000	285	0%	241	11.6%	93	4.3%	unknown(0)	deleterious(0.02)	-	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
LIN9	286826	genome.wustl.edu	37	1	226453972	226453972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173083.2	-1	provisional	p.R309Q	0.938	214	0%	257	26.5%	0	-	benign(0.029)	tolerated(0.35)	neutral(0.022)	NULL
LIN9	286826	genome.wustl.edu	37	1	226483622	226483622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173083.2	-1	provisional	p.R78Q	1.000	282	0%	312	26.6%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
ZNF678	339500	genome.wustl.edu	37	1	227843477	227843477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178549.3	+1	validated	p.R509I	0.979	96	0%	88	25%	1	0%	benign(0.005)	tolerated(0.12)	neutral(0.261)	superfamily_SSF57667
OBSCN	84033	genome.wustl.edu	37	1	228548105	228548105	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052843.2	+1	reviewed	p.I6504	0.072	12	0%	19	36.8%	4	50%	-	-	-	NULL
COG2	22796	genome.wustl.edu	37	1	230804483	230804483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007357.2	+1	reviewed	p.H183N	1.000	295	0%	281	30.6%	10	50%	possibly_damaging(0.799)	tolerated(0.21)	neutral(0.345)	NULL
EXOC8	149371	genome.wustl.edu	37	1	231472303	231472303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175876.3	-1	validated	p.E397K	1.000	36	0%	39	43.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GGPS1	9453	genome.wustl.edu	37	1	235505796	235505796	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037277.1	+1	reviewed	p.F204	1.000	134	0%	161	19.3%	2	50%	-	-	-	HMMPfam_polyprenyl_synt,superfamily_Terpenoid_synth
NID1	4811	genome.wustl.edu	37	1	236189398	236189398	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002508.2	-1	reviewed	p.P594	0.013	83	0%	56	28.6%	34	8.8%	-	-	-	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
ACTN2	88	genome.wustl.edu	37	1	236902617	236902617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	p.R298C	1.000	92	0%	78	35.9%	0	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_Spectrin,superfamily_Spectrin repeat
MTR	4548	genome.wustl.edu	37	1	237037109	237037109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000254.2	+1	reviewed	p.K814N	1.000	318	0%	328	26.2%	5	40%	benign(0.108)	deleterious(0.03)	neutral(0.373)	HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain
RYR2	6262	genome.wustl.edu	37	1	237659842	237659842	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.E665*	1.000	97	0%	80	28.7%	0	-	-	-	-	NULL
CEP170	9859	genome.wustl.edu	37	1	243362459	243362459	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000336415	-1	known	p.G80D	0.999	298	0%	300	16.3%	0	-	-	-	-	NULL
C1orf150	148823	genome.wustl.edu	37	1	247729240	247729240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145278.3	+1	provisional	p.E49D	0.024	96	1%	127	14.2%	0	-	benign(0.018)	tolerated(0.14)	neutral(0.250)	NULL
OR2M2	391194	genome.wustl.edu	37	1	248343467	248343467	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004688.1	+1	provisional	p.Y60*	0.837	707	0%	576	11.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2M3	127062	genome.wustl.edu	37	1	248366669	248366669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004689.1	+1	provisional	p.Q100H	0.295	601	0%	415	34%	0	-	benign(0.078)	deleterious(0.02)	neutral(0.389)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2M3	127062	genome.wustl.edu	37	1	248366960	248366960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004689.1	+1	provisional	p.K197N	0.000	453	0%	349	29.8%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T12	127064	genome.wustl.edu	37	1	248458026	248458026	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004692.1	-1	provisional	p.P285	0.542	269	0%	224	17.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T27	403239	genome.wustl.edu	37	1	248813409	248813409	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001824.1	-1	provisional	p.Y259	0.000	163	0%	115	22.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TPO	7173	genome.wustl.edu	37	2	1497624	1497624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000547.5	+1	reviewed	p.A607T	0.001	49	0%	40	20%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PXDN	7837	genome.wustl.edu	37	2	1680796	1680796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.E251K	1.000	72	0%	71	15.5%	3	0%	benign(0.129)	tolerated(0.18)	neutral(0.067)	HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like
MYT1L	23040	genome.wustl.edu	37	2	1795762	1795762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.Q1144H	1.000	258	0%	291	12.7%	0	-	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	NULL
KIDINS220	57498	genome.wustl.edu	37	2	8943200	8943200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020738.2	-1	validated	p.E221*	1.000	332	0.3%	368	17.4%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MBOAT2	129642	genome.wustl.edu	37	2	9098719	9098719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138799.2	-1	validated	p.R43Q	1.000	155	0%	127	13.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1B	9014	genome.wustl.edu	37	2	10059911	10059911	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005680.2	+1	reviewed	p.N509K	0.944	127	0%	112	25%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRHL1	29841	genome.wustl.edu	37	2	10101455	10101455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000324907	+1	known	p.D187N	1.000	98	2%	73	26%	2	100%	possibly_damaging(0.951)	deleterious(0.03)	deleterious(0.758)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17697618	17697618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099218.2	-1	provisional	p.P689S	0.384	50	2%	57	24.6%	0	-	benign(0.316)	deleterious(0)	deleterious(0.543)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17698107	17698107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099218.2	-1	provisional	p.D526Y	0.073	50	0%	74	21.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17698778	17698778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099218.2	-1	provisional	p.R302K	1.000	402	0%	414	32.9%	0	-	possibly_damaging(0.792)	tolerated(0.94)	neutral(0.297)	NULL
APOB	338	genome.wustl.edu	37	2	21230434	21230434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.F3102L	0.998	196	0%	188	18.6%	0	-	probably_damaging(0.982)	-	-	NULL
ITSN2	50618	genome.wustl.edu	37	2	24509155	24509155	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006277.2	-1	reviewed	p.E597*	1.000	280	0%	302	22.8%	0	-	-	-	-	NULL
OTOF	9381	genome.wustl.edu	37	2	26684959	26684959	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.F1761	1.000	79	0%	52	28.8%	0	-	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
C2orf70	339778	genome.wustl.edu	37	2	26802180	26802180	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409392	+1	known	p.E148*	0.018	132	0%	127	11%	9	0%	-	-	-	NULL
NRBP1	29959	genome.wustl.edu	37	2	27663269	27663269	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013392.2	+1	validated	e11-1	1.000	101	0%	111	23.4%	4	75%	-	-	-	-
C2orf16	84226	genome.wustl.edu	37	2	27803796	27803796	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032266.3	+1	validated	p.R1453*	0.003	74	0%	63	28.6%	1	0%	-	-	-	NULL
FAM179A	165186	genome.wustl.edu	37	2	29245073	29245073	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199280.2	+1	validated	p.E470D	0.988	154	0%	156	35.3%	4	75%	possibly_damaging(0.477)	deleterious(0.05)	deleterious(0.503)	superfamily_ARM repeat
YPEL5	51646	genome.wustl.edu	37	2	30381506	30381506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127399.1	+1	validated	p.E55K	1.000	181	0%	167	17.4%	84	21.4%	benign(0.062)	tolerated(0.35)	neutral(0.025)	HMMPfam_Yippee
MEMO1	51072	genome.wustl.edu	37	2	32145881	32145881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015955.2	-1	validated	p.R104L	1.000	82	0%	100	15%	2	50%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Memo
NLRC4	58484	genome.wustl.edu	37	2	32463350	32463350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360906	-1	known	p.K791T	0.986	211	0%	217	21.2%	0	-	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	superfamily_RNI-like
NLRC4	58484	genome.wustl.edu	37	2	32475303	32475303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360906	-1	known	p.E544*	0.718	335	0%	291	30.9%	1	0%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32770803	32770803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.D4229G	1.000	403	0%	310	17.4%	56	37.5%	benign(0.186)	deleterious(0.01)	neutral(0.423)	NULL
RASGRP3	25780	genome.wustl.edu	37	2	33745690	33745690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139488.1	+1	validated	p.R103W	0.880	393	0%	336	29.8%	1	0%	probably_damaging(0.98)	tolerated(0.24)	neutral(0.461)	HMMSmart_SM00229,superfamily_Ras GEF
FAM98A	25940	genome.wustl.edu	37	2	33812360	33812360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015475.3	-1	validated	p.P184S	1.000	122	0%	117	36.8%	0	-	benign(0.002)	tolerated(0.66)	neutral(0.003)	HMMPfam_DUF2465
CCDC75	253635	genome.wustl.edu	37	2	37319178	37319178	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174931.2	+1	validated	p.R146*	1.000	113	0%	167	27.5%	0	-	-	-	-	NULL
GALM	130589	genome.wustl.edu	37	2	38903139	38903139	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138801.2	+1	reviewed	p.G92	0.998	202	0%	147	15.6%	34	11.7%	-	-	-	HMMPfam_Aldose_epim,superfamily_Galactose mutarotase-like
TMEM178	130733	genome.wustl.edu	37	2	39934244	39934244	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152390.2	+1	validated	p.C190	0.795	141	0%	113	22.1%	45	15.5%	-	-	-	NULL
SLC8A1	6546	genome.wustl.edu	37	2	40366566	40366566	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359719	-1	known	p.R247C	0.999	95	0%	78	35.9%	8	0%	-	-	-	HMMPfam_Na_Ca_ex
THADA	63892	genome.wustl.edu	37	2	43793890	43793890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083953.1	-1	validated	p.F753C	1.000	169	0%	163	15.3%	4	50%	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	superfamily_ARM repeat
CAMKMT	79823	genome.wustl.edu	37	2	44993576	44993576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024766.3	+1	validated	p.A257V	1.000	207	0.5%	185	34.1%	6	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRKCE	5581	genome.wustl.edu	37	2	46372292	46372292	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005400.2	+1	reviewed	p.F551	0.942	205	0%	167	26.9%	8	25%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ATP6V1E2	90423	genome.wustl.edu	37	2	46739833	46739833	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080653.3	-1	validated	p.V6	0.002	92	0%	101	23.8%	0	-	-	-	-	NULL
STON1	11037	genome.wustl.edu	37	2	48822376	48822376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006873.2	+1	reviewed	p.E715*	1.000	263	0%	239	31.4%	0	-	-	-	-	NULL
C2orf73	129852	genome.wustl.edu	37	2	54562099	54562099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100396.1	+1	validated	p.N58D	1.000	194	0%	182	15.4%	0	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
EML6	400954	genome.wustl.edu	37	2	55195416	55195416	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039753.2	+1	validated	p.F1917C	1.000	149	0%	118	21.2%	0	-	probably_damaging(0.991)	tolerated(0.17)	deleterious(0.503)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
CCDC104	112942	genome.wustl.edu	37	2	55762977	55762977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000403007	+1	known	p.K205N	0.088	141	0%	192	12.5%	0	-	unknown(0)	-	-	NULL
AFTPH	54812	genome.wustl.edu	37	2	64819028	64819028	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203437.2	+1	validated	p.P890	0.995	99	0%	103	12.6%	46	13%	-	-	-	NULL
ETAA1	54465	genome.wustl.edu	37	2	67626758	67626758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019002.3	+1	validated	p.Q143H	1.000	119	0.8%	126	18.3%	2	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
APLF	200558	genome.wustl.edu	37	2	68753219	68753219	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173545.2	+1	validated	p.E217*	0.984	112	0%	138	20.3%	1	0%	-	-	-	NULL
ANTXR1	84168	genome.wustl.edu	37	2	69397410	69397410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032208.2	+1	reviewed	p.E360K	0.978	189	0%	176	29%	32	43.7%	possibly_damaging(0.936)	tolerated(0.37)	neutral(0.401)	NULL
GFPT1	2673	genome.wustl.edu	37	2	69575347	69575347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002056.2	-1	reviewed	p.R304Q	1.000	211	0.5%	193	22.3%	39	35.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AAK1	22848	genome.wustl.edu	37	2	69769767	69769767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014911.3	-1	reviewed	p.R141H	1.000	142	0%	113	24.8%	2	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ANXA4	307	genome.wustl.edu	37	2	70043309	70043309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001153.3	+1	reviewed	p.R204Q	1.000	290	0%	221	31.7%	43	37.2%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
ZNF638	27332	genome.wustl.edu	37	2	71591334	71591334	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014972.1	+1	reviewed	p.R557*	0.972	156	0%	118	37.3%	4	0%	-	-	-	NULL
EXOC6B	23233	genome.wustl.edu	37	2	72802678	72802678	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015189.1	-1	validated	p.P263	0.998	491	0.2%	420	27.4%	0	-	-	-	-	NULL
NAT8	9027	genome.wustl.edu	37	2	73868634	73868634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003960.3	-1	reviewed	p.R41Q	0.006	80	0%	73	28.8%	0	-	benign(0.01)	tolerated(0.33)	neutral(0.025)	superfamily_Acyl_CoA_acyltransferase
C2orf78	388960	genome.wustl.edu	37	2	74043300	74043300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080474.1	+1	predicted	p.F650L	0.587	52	0%	65	24.6%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
TET3	200424	genome.wustl.edu	37	2	74273580	74273580	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144993.1	+1	provisional	p.K44T	1.000	31	0%	27	22.2%	0	-	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	NULL
MTHFD2	10797	genome.wustl.edu	37	2	74435765	74435765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006636.3	+1	reviewed	p.I160S	0.996	539	0.2%	493	31.6%	24	4.1%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-bd,superfamily_SSF53223
LRRTM4	80059	genome.wustl.edu	37	2	77745564	77745564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134745.1	-1	validated	p.M477I	1.000	181	0%	166	18.7%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
CTNNA2	1496	genome.wustl.edu	37	2	80874766	80874766	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004389.3	+1	validated	p.V829	0.991	160	0%	133	28.6%	18	55.5%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
DNAH6	1768	genome.wustl.edu	37	2	84881796	84881796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.R1883W	0.031	379	0%	295	20%	4	25%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100132330	100132330	genome.wustl.edu	37	2	89117790	89117790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719152.1	-1	model	p.L69I	0.993	40	0%	44	13.6%	0	-	-	-	-	HMMPfam_MARVEL
IGKV6D-41	28869	genome.wustl.edu	37	2	90109079	90109079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390271	+1	known	p.P115L	0.041	122	0%	104	20.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48726
LOC400986	400986	genome.wustl.edu	37	2	96555590	96555590	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717763.2	-1	model	p.P623	0.000	386	0%	330	32.7%	1	0%	-	-	-	NULL
LOC400986	400986	genome.wustl.edu	37	2	96587379	96587379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717763.2	-1	model	p.K426Q	0.010	251	0%	250	17.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NCAPH	23397	genome.wustl.edu	37	2	97033035	97033035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015341.3	+1	reviewed	p.K641T	1.000	78	0%	97	10.3%	8	12.5%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	HMMPfam_Barren
ANKRD36	375248	genome.wustl.edu	37	2	97856888	97856888	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000461153	+1	known	p.E739*	0.003	263	0%	339	26%	0	-	-	-	-	NULL
NMS	129521	genome.wustl.edu	37	2	101095876	101095876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011717.1	+1	provisional	p.R108I	0.008	119	0%	106	22.6%	0	-	possibly_damaging(0.501)	deleterious(0.04)	deleterious(0.516)	NULL
PDCL3	79031	genome.wustl.edu	37	2	101188051	101188051	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024065.4	+1	validated	e5-1	1.000	350	0.3%	362	19.3%	0	-	-	-	-	-
NPAS2	4862	genome.wustl.edu	37	2	101549440	101549440	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002518.3	+1	reviewed	p.E84*	1.000	162	0%	149	14.8%	7	0%	-	-	-	HMMSmart_PAS,HMMPfam_PAS
IL1R1	3554	genome.wustl.edu	37	2	102793090	102793090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000877.2	+1	reviewed	p.K527N	0.987	105	0%	91	25.3%	22	40.9%	benign(0.013)	tolerated(0.56)	neutral(0.007)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
SLC9A4	389015	genome.wustl.edu	37	2	103130618	103130618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011552.3	+1	validated	p.I543M	0.962	255	0%	209	17.2%	0	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107075738	107075738	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.E41D	1.000	281	0%	281	6.8%	0	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	superfamily_SSF48452
SULT1C4	27233	genome.wustl.edu	37	2	109002692	109002692	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006588.2	+1	reviewed	p.K220	0.110	88	0%	102	18.6%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
GCC2	9648	genome.wustl.edu	37	2	109068866	109068866	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.E54*	1.000	250	0%	280	16.1%	0	-	-	-	-	NULL
BCL2L11	10018	genome.wustl.edu	37	2	111886262	111886262	+	Silent	SNP	C	C	T	rs182430759	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207002.2	+1	reviewed	p.G91	0.002	426	0%	370	19.5%	0	-	-	-	-	NULL
MERTK	10461	genome.wustl.edu	37	2	112740461	112740461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006343.2	+1	reviewed	p.E396A	0.017	320	0%	273	34.4%	5	80%	benign(0.228)	tolerated(0.19)	neutral(0.072)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MERTK	10461	genome.wustl.edu	37	2	112758829	112758829	+	Missense_Mutation	SNP	G	G	T	rs67199299		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006343.2	+1	reviewed	p.K552N	1.000	239	0%	238	10.5%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
CLASP1	23332	genome.wustl.edu	37	2	122260772	122260772	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015282.2	-1	validated	p.K228T	1.000	252	0%	238	21.8%	0	-	possibly_damaging(0.793)	tolerated(0.2)	neutral(0.347)	superfamily_ARM repeat
WDR33	55339	genome.wustl.edu	37	2	128479461	128479461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018383.3	-1	reviewed	p.E540D	1.000	693	0%	699	20%	4	50%	unknown(0)	tolerated(0.07)	-	superfamily_WD40_like
SAP130	79595	genome.wustl.edu	37	2	128735653	128735653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000259234	-1	known	p.R656W	1.000	115	0%	88	20.5%	30	13.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAB6C	84084	genome.wustl.edu	37	2	130737824	130737824	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032144.2	+1	validated	p.I46L	0.999	400	0%	326	10.7%	0	-	benign(0.262)	deleterious(0)	deleterious(0.472)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
TUBA3E	112714	genome.wustl.edu	37	2	130951947	130951947	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207312.2	-1	validated	p.R156	0.998	209	0%	140	25.7%	4	0%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
CCDC115	84317	genome.wustl.edu	37	2	131098508	131098508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032357.2	-1	provisional	p.R135C	0.985	86	0%	70	31.4%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPN18	26469	genome.wustl.edu	37	2	131127394	131127394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014369.3	+1	reviewed	p.F180L	1.000	284	0%	200	10%	64	18.7%	probably_damaging(0.997)	tolerated(0.25)	deleterious(0.503)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
LOC150786	150786	genome.wustl.edu	37	2	132120918	132120918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077637.1	-1	validated	p.N126H	1.000	670	0%	514	19.1%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
GPR39	2863	genome.wustl.edu	37	2	133174961	133174961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001508.2	+1	validated	p.E116K	1.000	148	0%	102	17.6%	37	32.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCNT2	905	genome.wustl.edu	37	2	135677452	135677452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058241.1	+1	reviewed	p.F77L	1.000	478	0%	405	17%	1	100%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
RAB3GAP1	22930	genome.wustl.edu	37	2	135872873	135872873	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012233.2	+1	reviewed	p.F190	0.997	151	0%	200	12%	19	5.2%	-	-	-	NULL
R3HDM1	23518	genome.wustl.edu	37	2	136473239	136473239	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015361.2	+1	provisional	p.F917L	1.000	378	0%	269	26.8%	50	48%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
LOC440917	440917	genome.wustl.edu	37	2	139045690	139045690	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041289.2	-1	model	NULL	0.997	325	0%	298	13.4%	0	-	-	-	-	-
GTDC1	79712	genome.wustl.edu	37	2	144966241	144966241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006636.3	-1	validated	p.K36N	1.000	192	0%	199	21.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZEB2	9839	genome.wustl.edu	37	2	145158815	145158815	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419938	-1	known	p.R178K	1.000	279	0%	231	12.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EPC2	26122	genome.wustl.edu	37	2	149447847	149447847	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015630.3	+1	validated	p.V73G	1.000	325	0.3%	269	30.5%	8	37.5%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_EPL1
EPC2	26122	genome.wustl.edu	37	2	149520360	149520360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015630.3	+1	validated	p.C313R	1.000	199	0%	199	17.6%	0	-	possibly_damaging(0.556)	tolerated(0.4)	neutral(0.206)	NULL
KIF5C	3800	genome.wustl.edu	37	2	149793838	149793838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435030	+1	known	p.R111Q	1.000	94	0%	85	23.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF5C	3800	genome.wustl.edu	37	2	149847535	149847535	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435030	+1	known	p.V576	1.000	72	0%	46	37%	0	-	-	-	-	NULL
RIF1	55183	genome.wustl.edu	37	2	152317694	152317694	+	Missense_Mutation	SNP	C	C	A	rs150890694		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.L1040I	0.925	106	0%	103	28.2%	0	-	benign(0.007)	deleterious(0.04)	neutral(0.349)	superfamily_ARM repeat
PRPF40A	55660	genome.wustl.edu	37	2	153532998	153532998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017892.3	-1	validated	p.T318A	1.000	217	0%	167	12%	30	50%	benign(0.079)	tolerated(0.46)	neutral(0.018)	NULL
GALNT13	114805	genome.wustl.edu	37	2	155295239	155295239	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052917.2	+1	validated	e10+1	1.000	243	0%	245	30.2%	0	-	-	-	-	-
ERMN	57471	genome.wustl.edu	37	2	158178025	158178025	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009959.1	-1	validated	p.E218*	1.000	198	0%	189	37%	2	0%	-	-	-	NULL
CYTIP	9595	genome.wustl.edu	37	2	158287392	158287392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004288.4	-1	reviewed	p.H121R	0.996	116	0%	99	14.1%	10	0%	possibly_damaging(0.926)	tolerated(0.15)	deleterious(0.615)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
TANC1	85461	genome.wustl.edu	37	2	160082257	160082257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033394.2	+1	validated	p.Q1290H	1.000	319	0%	216	16.7%	3	33.3%	benign(0.382)	tolerated(0.08)	neutral(0.422)	HMMSmart_SM00028
SLC4A10	57282	genome.wustl.edu	37	2	162735688	162735688	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022058.3	+1	reviewed	p.S302	0.922	204	0%	183	25.1%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A10	57282	genome.wustl.edu	37	2	162820723	162820723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022058.3	+1	reviewed	p.R951*	1.000	224	0.4%	225	12.9%	0	-	-	-	-	HMMPfam_HCO3_cotransp
SCN3A	6328	genome.wustl.edu	37	2	165986676	165986676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.V899A	1.000	281	0%	248	17.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166164373	166164373	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.L134	1.000	333	0%	269	26.4%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167277771	167277771	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002976.2	-1	validated	p.E1022*	0.994	117	0%	175	30.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	168105294	168105294	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.K2464N	0.018	124	0%	94	30.9%	0	-	possibly_damaging(0.566)	deleterious(0)	deleterious(0.638)	NULL
LRP2	4036	genome.wustl.edu	37	2	170062108	170062108	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.I2532	0.856	69	0%	79	21.5%	4	75%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
PPIG	9360	genome.wustl.edu	37	2	170492609	170492609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004792.2	+1	validated	p.R342Q	1.000	159	0%	140	23.6%	17	35.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLC25A12	8604	genome.wustl.edu	37	2	172669865	172669865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003705.3	-1	reviewed	p.F385L	1.000	133	0%	153	15.7%	0	-	benign(0.047)	tolerated(0.23)	neutral(0.045)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
RAPGEF4	11069	genome.wustl.edu	37	2	173850190	173850190	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007023.3	+1	validated	p.I373M	0.974	314	0%	304	11.2%	1	0%	benign(0.285)	tolerated(0.14)	neutral(0.337)	HMMSmart_SM00100,superfamily_cAMP-binding domain-like
LOC643997	643997	genome.wustl.edu	37	2	174350985	174350985	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_292963.7	-1	model	p.F36V	1.000	20	0%	26	42.3%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
SCRN3	79634	genome.wustl.edu	37	2	175287648	175287648	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024583.3	+1	validated	p.R264*	1.000	195	0%	185	29.2%	0	-	-	-	-	NULL
TTC30B	150737	genome.wustl.edu	37	2	178416698	178416698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152517.2	-1	validated	p.R265K	0.963	112	0%	89	29.2%	5	40%	benign(0)	tolerated(1)	-	superfamily_TPR-like
TTN	7273	genome.wustl.edu	37	2	179393279	179393279	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.S33165L	0.648	108	0%	90	35.6%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179399891	179399891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E31247D	0.998	153	0%	135	24.4%	0	-	benign(0.001)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179402629	179402629	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.E30534*	1.000	100	0%	78	43.6%	0	-	probably_damaging(0.983)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179426604	179426604	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.A25517V	1.000	95	0%	76	35.5%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179431565	179431565	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R23862*	0.979	36	0%	29	17.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179433610	179433610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R23180Q	0.993	157	0%	145	33.8%	0	-	benign(0.423)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179438298	179438298	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.S21619Y	0.267	204	0%	207	39.6%	1	0%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179442499	179442499	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.R20317*	0.258	262	0%	252	23.8%	0	-	benign(0.027)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179454216	179454216	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.K18176Q	0.998	168	0%	157	14.6%	0	-	benign(0.29)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179565880	179565880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E8973K	1.000	523	0%	459	21.4%	0	-	unknown(0)	deleterious(0.02)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179585804	179585804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E6404K	1.000	190	0%	152	25%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179592993	179592993	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E5276*	1.000	129	0.8%	123	27.6%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179595359	179595359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.F4723L	1.000	211	0%	149	24.2%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179599205	179599205	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R3872*	1.000	99	0%	94	31.9%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179615150	179615150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.H3993N	0.097	241	0%	196	19.9%	0	-	benign(0.29)	tolerated(0.54)	neutral(0.097)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
CCDC141	285025	genome.wustl.edu	37	2	179742696	179742696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173648.2	-1	provisional	p.N57H	0.993	198	0%	189	27%	0	-	possibly_damaging(0.882)	deleterious(0.04)	deleterious(0.694)	NULL
ZNF385B	151126	genome.wustl.edu	37	2	180409606	180409606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152520.4	-1	validated	p.S115Y	1.000	194	0%	142	25.4%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
ITGA4	3676	genome.wustl.edu	37	2	182360536	182360536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000885.4	+1	reviewed	p.A471V	1.000	250	0%	190	12.6%	4	0%	benign(0.001)	tolerated(0.76)	neutral(0.001)	HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_Integrin domains
CERKL	375298	genome.wustl.edu	37	2	182423343	182423343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030311.2	-1	reviewed	p.R283Q	0.000	168	0%	139	17.3%	14	14.2%	benign(0.312)	tolerated(0.34)	neutral(0.120)	HMMPfam_DAGK_cat
NEUROD1	4760	genome.wustl.edu	37	2	182543494	182543494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002500.2	-1	reviewed	p.E32K	1.000	251	0%	160	20.6%	0	-	benign(0.028)	tolerated(0.18)	neutral(0.058)	NULL
PDE1A	5136	genome.wustl.edu	37	2	183050537	183050537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456212	-1	known	p.F549C	0.000	122	0%	118	28.8%	0	-	unknown(0)	-	-	NULL
ZSWIM2	151112	genome.wustl.edu	37	2	187692719	187692719	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182521.2	-1	validated	p.Q632*	0.998	67	0%	87	19.5%	0	-	-	-	-	NULL
CALCRL	10203	genome.wustl.edu	37	2	188243720	188243720	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005795.4	-1	validated	p.H149	1.000	247	0%	241	27.8%	4	25%	-	-	-	HMMPfam_7tm_2,superfamily_SSF111418
COL3A1	1281	genome.wustl.edu	37	2	189851792	189851792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000090.3	+1	reviewed	p.S152Y	1.000	212	0%	196	22.4%	57	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
COL3A1	1281	genome.wustl.edu	37	2	189872637	189872637	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000090.3	+1	reviewed	p.I1130	0.001	55	0%	39	17.9%	226	0.4%	-	-	-	HMMPfam_Collagen
ANKAR	150709	genome.wustl.edu	37	2	190541302	190541302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431575	+1	known	p.R29I	1.000	84	0%	87	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MSTN	2660	genome.wustl.edu	37	2	190922264	190922264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005259.2	-1	reviewed	p.R283H	1.000	128	0.8%	112	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
STAT1	6772	genome.wustl.edu	37	2	191844575	191844575	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007315.3	-1	reviewed	p.K550N	1.000	143	0%	203	22.2%	19	47.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
SLC39A10	57181	genome.wustl.edu	37	2	196581642	196581642	+	Missense_Mutation	SNP	G	G	T	rs186318919	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.D660Y	1.000	193	0%	155	15.5%	24	33.3%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_Zip
STK17B	9262	genome.wustl.edu	37	2	197002222	197002222	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004226.3	-1	validated	p.F356	0.991	244	0%	214	19.2%	5	0%	-	-	-	NULL
SF3B1	23451	genome.wustl.edu	37	2	198265007	198265007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012433.2	-1	reviewed	p.R957Q	1.000	192	0%	190	18.4%	91	20.8%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_HEAT,superfamily_ARM repeat
RFTN2	130132	genome.wustl.edu	37	2	198480650	198480650	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414909	-1	known	e3-1	0.996	191	0%	145	20.7%	1	0%	-	-	-	-
SGOL2	151246	genome.wustl.edu	37	2	201437527	201437527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152524.5	+1	validated	p.P820T	0.224	114	0%	103	11.7%	0	-	benign(0.003)	tolerated(0.35)	neutral(0.021)	NULL
CASP8	841	genome.wustl.edu	37	2	202131261	202131261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080125.1	+1	reviewed	p.D77Y	0.312	133	0%	92	20.7%	5	0%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
ALS2CR12	130540	genome.wustl.edu	37	2	202172323	202172323	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415745	-1	known	p.S41L	1.000	267	0%	260	15.8%	0	-	-	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202352430	202352430	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152525.5	-1	validated	p.R593*	0.947	359	0%	412	21.8%	0	-	-	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202356661	202356661	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439140	-1	known	p.E1468A	0.983	400	0%	394	11.4%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202358588	202358588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439140	-1	known	p.E826K	0.000	67	0%	83	22.9%	0	-	possibly_damaging(0.535)	-	-	NULL
PARD3B	117583	genome.wustl.edu	37	2	205986592	205986592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152526.4	+1	validated	p.P362S	0.999	195	0%	135	33.3%	0	-	benign(0.059)	tolerated(0.66)	neutral(0.007)	superfamily_PDZ
ZDBF2	57683	genome.wustl.edu	37	2	207170663	207170663	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.E471*	0.459	81	0%	76	31.6%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175414	207175414	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.E2054	0.993	46	0%	42	38.1%	0	-	-	-	-	NULL
ADAM23	8745	genome.wustl.edu	37	2	207310144	207310144	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003812.2	+1	reviewed	p.E110*	1.000	152	0%	115	19.1%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
DYTN	391475	genome.wustl.edu	37	2	207564524	207564524	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093730.1	-1	provisional	p.L216	0.005	196	0%	201	18.4%	0	-	-	-	-	HMMPfam_efhand_2,superfamily_SSF47473
PIKFYVE	200576	genome.wustl.edu	37	2	209190495	209190495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.Q987R	0.073	73	0%	86	40.7%	0	-	possibly_damaging(0.7)	tolerated(0.06)	deleterious(0.574)	NULL
MAP2	4133	genome.wustl.edu	37	2	210557456	210557456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002374.3	+1	reviewed	p.P188S	1.000	56	0%	81	18.5%	0	-	possibly_damaging(0.952)	tolerated(0.07)	deleterious(0.715)	NULL
UNC80	285175	genome.wustl.edu	37	2	210642075	210642075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.R131Q	0.664	58	0%	50	10%	0	-	possibly_damaging(0.813)	tolerated(0.63)	neutral(0.310)	NULL
ATIC	471	genome.wustl.edu	37	2	216203539	216203539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004044.6	+1	reviewed	p.R379Q	1.000	181	0%	126	19%	26	34.6%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly
FN1	2335	genome.wustl.edu	37	2	216262506	216262506	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.I1138	0.385	207	0%	185	20.5%	64	7.8%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USP37	57695	genome.wustl.edu	37	2	219353050	219353050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020935.2	-1	validated	p.D523Y	1.000	225	0%	245	30.2%	1	0%	benign(0.37)	deleterious(0.02)	deleterious(0.500)	HMMPfam_UCH,superfamily_Cysteine proteinases
ASIC4	55515	genome.wustl.edu	37	2	220402745	220402745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018674.4	+1	reviewed	p.L660I	1.000	71	0%	54	25.9%	0	-	possibly_damaging(0.568)	tolerated(0.22)	neutral(0.237)	NULL
SCG2	7857	genome.wustl.edu	37	2	224463184	224463184	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003469.3	-1	reviewed	p.E273*	0.209	311	0%	301	18.3%	0	-	-	-	-	HMMPfam_Granin
AP1S3	130340	genome.wustl.edu	37	2	224623458	224623458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039569.1	-1	validated	p.E147K	1.000	278	0.4%	268	16.8%	1	0%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
DOCK10	55619	genome.wustl.edu	37	2	225796376	225796376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.P45S	1.000	174	0%	156	16.7%	2	0%	possibly_damaging(0.948)	tolerated(0.09)	deleterious(0.688)	NULL
COL4A4	1286	genome.wustl.edu	37	2	227924334	227924334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000092.4	-1	reviewed	p.R724S	0.483	53	0%	60	16.7%	0	-	possibly_damaging(0.951)	tolerated(0.1)	deleterious(0.680)	NULL
WDR69	164781	genome.wustl.edu	37	2	228786257	228786257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178821.1	+1	provisional	p.K398T	0.917	114	0%	95	20%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SPHKAP	80309	genome.wustl.edu	37	2	228884419	228884419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142644.1	-1	validated	p.G384V	0.993	246	0.4%	258	30.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SP140	11262	genome.wustl.edu	37	2	231112673	231112673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007237.4	+1	validated	p.S262N	0.000	421	0.5%	346	19.1%	3	0%	possibly_damaging(0.767)	deleterious(0.05)	deleterious(0.630)	NULL
CAB39	51719	genome.wustl.edu	37	2	231663533	231663533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130849.1	+1	validated	p.S163L	1.000	164	0%	197	15.7%	6	0%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Mo25,superfamily_ARM repeat
B3GNT7	93010	genome.wustl.edu	37	2	232263162	232263162	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145236.2	+1	validated	p.F244	0.993	67	0%	49	14.3%	17	0%	-	-	-	HMMPfam_Galactosyl_T
LOC729898	729898	genome.wustl.edu	37	2	232298714	232298714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001134101.1	-1	model	p.R124I	1.000	235	0%	239	13%	0	-	-	-	-	HMMPfam_DUF101
SAG	6295	genome.wustl.edu	37	2	234247328	234247328	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000541.4	+1	reviewed	p.K317	0.995	227	0%	201	23.4%	0	-	-	-	-	HMMPfam_Arrestin_C,superfamily_Ig_E-set
UGT1A8	54576	genome.wustl.edu	37	2	234526493	234526493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019076.4	+1	reviewed	p.K47T	0.988	132	0%	87	27.6%	0	-	benign(0.064)	deleterious(0.01)	neutral(0.410)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
TRPM8	79054	genome.wustl.edu	37	2	234847739	234847739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024080.4	+1	validated	p.T149I	1.000	28	0%	21	23.8%	0	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	NULL
IQCA1	79781	genome.wustl.edu	37	2	237396653	237396653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024726.3	-1	provisional	p.R213H	0.001	148	0%	133	21.1%	1	0%	possibly_damaging(0.911)	tolerated(0.22)	neutral(0.405)	NULL
CXCR7	57007	genome.wustl.edu	37	2	237489774	237489774	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020311.2	+1	reviewed	p.A222	0.000	45	0%	33	36.4%	203	37.9%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
COL6A3	1293	genome.wustl.edu	37	2	238242190	238242190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.K3077N	0.825	168	0%	152	32.9%	26	0%	unknown(0)	-	-	NULL
COL6A3	1293	genome.wustl.edu	37	2	238275493	238275493	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.R1779	0.979	111	0%	83	33.7%	32	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
UBE2F	140739	genome.wustl.edu	37	2	238925174	238925174	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448502	+1	known	e4-1	0.995	78	0%	99	32.3%	0	-	-	-	-	-
FLJ45964	401040	genome.wustl.edu	37	2	240500088	240500088	+	RNA	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041563.1	+1	model	NULL	0.279	54	0%	40	20%	0	-	-	-	-	-
KIF1A	547	genome.wustl.edu	37	2	241697851	241697851	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004321.4	-1	reviewed	p.I827	0.057	74	0%	50	12%	45	11.1%	-	-	-	NULL
PPP1R7	5510	genome.wustl.edu	37	2	242099761	242099761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002712.1	+1	provisional	p.S150Y	1.000	103	0%	107	22.4%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
CNTN4	152330	genome.wustl.edu	37	3	3084090	3084090	+	Missense_Mutation	SNP	G	G	A	rs183942017	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175607.1	+1	reviewed	p.R832Q	1.000	255	0.4%	207	22.2%	0	-	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LRRN1	57633	genome.wustl.edu	37	3	3887187	3887187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020873.5	+1	validated	p.R288W	0.223	88	0%	96	28.1%	1	100%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	superfamily_SSF52058
SETMAR	6419	genome.wustl.edu	37	3	4358243	4358243	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006515.3	+1	validated	p.L456	0.983	24	0%	21	28.6%	7	28.5%	-	-	-	NULL
GRM7	2917	genome.wustl.edu	37	3	7503406	7503406	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.L504	0.989	118	0.8%	91	11%	3	0%	-	-	-	superfamily_SSF53822
CPNE9	151835	genome.wustl.edu	37	3	9759824	9759824	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153635.2	+1	validated	p.K348T	1.000	67	0%	58	12.1%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
CAMK1	8536	genome.wustl.edu	37	3	9809366	9809366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003656.3	-1	reviewed	p.R23Q	0.936	113	0%	96	27.1%	5	40%	possibly_damaging(0.782)	tolerated(0.26)	neutral(0.327)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C3orf24	115795	genome.wustl.edu	37	3	10146326	10146326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173472.1	-1	validated	p.D45N	1.000	482	0%	362	28.2%	0	-	benign(0.145)	deleterious(0)	neutral(0.457)	NULL
ATP2B2	491	genome.wustl.edu	37	3	10420042	10420042	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001331.2	-1	reviewed	p.A365	0.891	35	0%	19	26.3%	1	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
SLC6A11	6538	genome.wustl.edu	37	3	10974899	10974899	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014229.1	+1	provisional	p.F478	0.989	243	0%	181	19.9%	0	-	-	-	-	HMMPfam_SNF
SLC6A1	6529	genome.wustl.edu	37	3	11075338	11075338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003042.3	+1	validated	p.F480L	1.000	159	0%	120	36.7%	0	-	benign(0.004)	tolerated(0.13)	neutral(0.253)	HMMPfam_SNF
CAND2	23066	genome.wustl.edu	37	3	12858166	12858166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012298.2	+1	validated	p.R486C	1.000	19	0.000	9	0.444	2	50%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_ARM-type_fold
FGD5	152273	genome.wustl.edu	37	3	14862129	14862129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152536.3	+1	validated	p.E517D	0.000	33	0%	27	22.2%	6	50%	benign(0.001)	tolerated(1)	-	NULL
GALNTL2	117248	genome.wustl.edu	37	3	16216853	16216853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054110.4	+1	validated	p.Q65H	1.000	129	0%	104	36.5%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
OXNAD1	92106	genome.wustl.edu	37	3	16344944	16344944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138381.2	+1	validated	p.D272Y	0.016	200	0%	156	23.1%	1	0%	possibly_damaging(0.609)	deleterious(0.04)	deleterious(0.560)	HMMPfam_NAD_binding_1,superfamily_SSF52343
RAB5A	5868	genome.wustl.edu	37	3	20017656	20017656	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004162.4	+1	validated	p.F145V	1.000	146	0%	112	23.2%	11	36.3%	benign(0.049)	tolerated(0.54)	neutral(0.010)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
NKIRAS1	28512	genome.wustl.edu	37	3	23934596	23934596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020345.3	-1	validated	p.S190F	0.011	186	0%	163	25.8%	0	-	benign(0.135)	deleterious(0.05)	neutral(0.357)	NULL
NEK10	152110	genome.wustl.edu	37	3	27215980	27215980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396636	-1	known	p.S909L	0.955	173	0%	171	31.6%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SLC4A7	9497	genome.wustl.edu	37	3	27444713	27444713	+	Silent	SNP	G	G	A	rs144859662	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003615.3	-1	validated	p.Y737	0.721	81	0%	81	38.3%	1	100%	-	-	-	HMMPfam_HCO3_cotransp
SLC4A7	9497	genome.wustl.edu	37	3	27460084	27460084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003615.3	-1	validated	p.D509Y	1.000	172	0%	183	12.6%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
ZNF860	344787	genome.wustl.edu	37	3	32031158	32031158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137674.1	+1	provisional	p.S196Y	0.952	134	0%	150	36%	0	-	probably_damaging(0.961)	tolerated(1)	neutral(0.404)	NULL
ZNF860	344787	genome.wustl.edu	37	3	32032244	32032244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137674.1	+1	provisional	p.R558I	0.969	163	0%	144	16.7%	1	0%	possibly_damaging(0.884)	tolerated(0.16)	neutral(0.404)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ARPP21	10777	genome.wustl.edu	37	3	35723339	35723339	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016300.4	+1	validated	p.E32D	0.928	157	0%	158	36.7%	0	-	benign(0.019)	tolerated(0.05)	neutral(0.346)	NULL
ARPP21	10777	genome.wustl.edu	37	3	35778739	35778739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016300.4	+1	validated	p.R510Q	0.977	45	0%	43	37.2%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
MIR128-2	406916	genome.wustl.edu	37	3	35786003	35786003	+	RNA	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384893	+1	known	NULL	1.000	78	0%	57	12.3%	0	-	-	-	-	-
MLH1	4292	genome.wustl.edu	37	3	37055924	37055924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000249.3	+1	reviewed	p.E227*	1.000	111	0.9%	129	11.6%	11	0%	-	-	-	HMMPfam_DNA_mis_repair,superfamily_Ribosomal_S5_D2-typ_fold
SCN5A	6331	genome.wustl.edu	37	3	38595795	38595795	+	Silent	SNP	G	G	A	rs141789366	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.F1596	0.997	188	0%	134	29.9%	6	50%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN11A	11280	genome.wustl.edu	37	3	38961476	38961476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014139.2	-1	validated	p.K303N	0.818	250	0%	275	34.5%	0	-	possibly_damaging(0.903)	tolerated(0.56)	neutral(0.364)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TTC21A	199223	genome.wustl.edu	37	3	39170604	39170604	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105513.2	+1	validated	p.F654	0.999	78	0%	52	13.5%	34	32.3%	-	-	-	superfamily_TPR-like
ENTPD3	956	genome.wustl.edu	37	3	40468797	40468797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001248.2	+1	validated	p.Y463C	1.000	87	0%	78	17.9%	21	23.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDA1_CD39
CCBP2	1238	genome.wustl.edu	37	3	42906582	42906582	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001296.4	+1	reviewed	p.H196	0.000	64	0%	64	18.8%	6	16.6%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
C3orf77	375337	genome.wustl.edu	37	3	44284775	44284775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.F259L	0.067	124	0%	96	26%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44285556	44285556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.R520C	0.216	155	0%	185	31.4%	0	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44312244	44312244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.R1105H	0.989	169	0%	183	36.6%	0	-	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	NULL
ZNF502	91392	genome.wustl.edu	37	3	44762971	44762971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134440.1	+1	validated	p.R221Q	0.000	108	0%	103	27.2%	1	100%	benign(0.001)	tolerated(0.59)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TMEM42	131616	genome.wustl.edu	37	3	44905741	44905741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144638.1	+1	provisional	p.S82Y	0.712	501	0%	339	22.1%	8	37.5%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
LARS2	23395	genome.wustl.edu	37	3	45527276	45527276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015340.3	+1	reviewed	p.D371N	1.000	179	0%	159	32.7%	5	80%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ValRS_IleRS_edit,superfamily_SSF52374
CCR2	729230	genome.wustl.edu	37	3	46399384	46399384	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123041.2	+1	validated	p.I122	0.000	407	0%	435	18.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NBEAL2	23218	genome.wustl.edu	37	3	47039982	47039982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	p.R1050W	0.402	65	0%	59	25.4%	46	32.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SCAP	22937	genome.wustl.edu	37	3	47456366	47456366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012235.2	-1	reviewed	p.K1086T	1.000	46	0%	37	21.6%	106	44.3%	possibly_damaging(0.809)	tolerated(0.19)	neutral(0.354)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAP4	4134	genome.wustl.edu	37	3	47957505	47957505	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002375.4	-1	reviewed	p.D604E	0.557	218	0%	213	36.2%	33	42.4%	unknown(0)	tolerated(0.14)	-	NULL
CDC25A	993	genome.wustl.edu	37	3	48205814	48205814	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001789.2	-1	reviewed	p.S435	0.616	128	0%	96	33.3%	4	75%	-	-	-	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
CELSR3	1951	genome.wustl.edu	37	3	48698283	48698283	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.I595	0.863	40	0%	32	21.9%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LAMB2	3913	genome.wustl.edu	37	3	49169730	49169730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.R120W	0.812	169	0%	139	23%	114	27.1%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Laminin_N,HMMSmart_LamNT
CAMKV	79012	genome.wustl.edu	37	3	49896822	49896822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024046.3	-1	validated	p.A479T	1.000	115	0%	101	16.8%	0	-	benign(0.135)	deleterious(0.01)	neutral(0.417)	NULL
RBM6	10180	genome.wustl.edu	37	3	50098640	50098640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005777.2	+1	validated	p.R780Q	1.000	386	0%	311	33.8%	16	56.2%	benign(0.066)	deleterious(0)	neutral(0.449)	superfamily_SSF54928
DOCK3	1795	genome.wustl.edu	37	3	51367625	51367625	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.D1153	0.939	74	0%	65	33.8%	0	-	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52409985	52409985	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.E2392*	1.000	159	0%	126	30.2%	2	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
PBRM1	55193	genome.wustl.edu	37	3	52678795	52678795	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018165.4	-1	validated	p.S275*	1.000	117	0%	185	21.6%	0	-	-	-	-	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain
SFMBT1	51460	genome.wustl.edu	37	3	52950218	52950218	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005158.1	-1	reviewed	p.S476	0.703	70	0%	48	54.2%	3	0%	-	-	-	NULL
ERC2	26059	genome.wustl.edu	37	3	56468947	56468947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015576.1	-1	validated	p.R30Q	1.000	183	0.5%	174	25.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
CCDC66	285331	genome.wustl.edu	37	3	56653888	56653888	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141947.1	+1	validated	p.R907*	0.998	230	0%	179	15.6%	5	20%	-	-	-	NULL
ASB14	142686	genome.wustl.edu	37	3	57322249	57322249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389601	-1	known	p.G83S	1.000	228	0%	161	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00248,superfamily_Ankyrin repeat
DNAH12	201625	genome.wustl.edu	37	3	57443649	57443649	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.K1022N	1.000	182	0%	204	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
SLMAP	7871	genome.wustl.edu	37	3	57893681	57893681	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416658	+1	known	p.R115*	0.983	179	0%	150	24%	2	0%	-	-	-	NULL
PXK	54899	genome.wustl.edu	37	3	58385103	58385103	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000479134	+1	known	p.C148*	1.000	227	0%	204	22.5%	4	25%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_Protein kinase-like (PK-like)
CADPS	8618	genome.wustl.edu	37	3	62751571	62751571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.M177T	1.000	142	0%	78	10.3%	1	0%	benign(0.055)	tolerated(0.39)	neutral(0.019)	NULL
PROK2	60675	genome.wustl.edu	37	3	71821970	71821970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126128.1	-1	reviewed	p.F99L	0.854	115	0%	105	21%	0	-	benign(0.001)	tolerated(0.67)	neutral(0.003)	HMMPfam_Prokineticin,superfamily_Colipase-like
EBLN2	55096	genome.wustl.edu	37	3	73111877	73111877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018029.3	+1	provisional	p.M215I	0.000	91	0%	82	32.9%	1	100%	possibly_damaging(0.444)	deleterious(0.01)	deleterious(0.550)	HMMPfam_BDV_P40,superfamily_P40_nucleoprot_BD-vir
ROBO2	6092	genome.wustl.edu	37	3	77530263	77530263	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002942.3	+1	reviewed	p.K187T	1.000	222	0%	204	22.1%	15	33.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
POU1F1	5449	genome.wustl.edu	37	3	87313486	87313486	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122757.1	-1	reviewed	p.E157*	1.000	191	0%	185	21.1%	0	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
ZNF654	55279	genome.wustl.edu	37	3	88189245	88189245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018293.2	+1	validated	p.H262P	1.000	142	0%	108	20.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EPHA3	2042	genome.wustl.edu	37	3	89462293	89462293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005233.5	+1	reviewed	p.K589Q	1.000	148	0%	112	31.2%	0	-	benign(0.028)	tolerated(0.31)	neutral(0.029)	NULL
PROS1	5627	genome.wustl.edu	37	3	93603712	93603712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000313.3	-1	reviewed	p.R451Q	1.000	196	0%	142	25.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
OR5H6	79295	genome.wustl.edu	37	3	97983879	97983879	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005479.1	+1	provisional	p.R251*	0.000	162	0%	169	20.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NIT2	56954	genome.wustl.edu	37	3	100065064	100065064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020202.4	+1	validated	p.R157Q	1.000	440	0%	312	39.7%	24	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse
ABI3BP	25890	genome.wustl.edu	37	3	100645227	100645227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015429.3	-1	validated	p.L67I	1.000	485	0%	393	19.8%	8	75%	possibly_damaging(0.625)	tolerated(0.52)	neutral(0.227)	NULL
RG9MTD1	54931	genome.wustl.edu	37	3	101283714	101283714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017819.2	+1	provisional	p.R30I	0.076	231	0%	267	17.6%	2	0%	possibly_damaging(0.92)	deleterious(0.05)	deleterious(0.716)	NULL
CEP97	79598	genome.wustl.edu	37	3	101443560	101443560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024548.2	+1	provisional	p.E14K	1.000	73	0%	73	30.1%	3	33.3%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
CEP97	79598	genome.wustl.edu	37	3	101483873	101483873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024548.2	+1	provisional	p.E692D	0.995	192	0.5%	228	20.2%	1	100%	possibly_damaging(0.521)	deleterious(0.04)	deleterious(0.524)	NULL
MYH15	22989	genome.wustl.edu	37	3	108124192	108124192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.N1597H	0.998	97	0%	110	29.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_tail_1
MORC1	27136	genome.wustl.edu	37	3	108725917	108725917	+	Missense_Mutation	SNP	C	C	T	rs138435095		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014429.3	-1	reviewed	p.E576K	0.001	151	0%	158	21.5%	0	-	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
GCET2	257144	genome.wustl.edu	37	3	111842308	111842308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152785.3	-1	reviewed	p.H177Q	0.001	156	0%	142	34.5%	1	0%	possibly_damaging(0.92)	deleterious(0.02)	deleterious(0.754)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111873861	111873861	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.E1134*	0.000	329	0%	312	26.6%	0	-	-	-	-	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111983118	111983118	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.H317	0.042	114	0%	122	9.8%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
ZDHHC23	254887	genome.wustl.edu	37	3	113675205	113675205	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173570.3	+1	validated	p.E298*	1.000	418	0%	413	29.8%	1	0%	-	-	-	HMMPfam_zf-DHHC
TMEM39A	55254	genome.wustl.edu	37	3	119151054	119151054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018266.1	-1	provisional	p.F414C	1.000	74	0%	73	30.1%	22	59%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Tmp39
NR1I2	8856	genome.wustl.edu	37	3	119534204	119534204	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022002.2	+1	reviewed	p.L363	0.997	45	0%	42	38.1%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
HGD	3081	genome.wustl.edu	37	3	120363206	120363206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000187.3	-1	reviewed	p.V245A	1.000	118	0.8%	102	34.3%	145	52.4%	possibly_damaging(0.725)	deleterious(0)	deleterious(0.708)	HMMPfam_HgmA,superfamily_RmlC-like cupins
POLQ	10721	genome.wustl.edu	37	3	121212507	121212507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.Q780H	1.000	148	0%	165	13.9%	0	-	possibly_damaging(0.541)	tolerated(0.1)	deleterious(0.470)	NULL
ARGFX	503582	genome.wustl.edu	37	3	121303897	121303897	+	Silent	SNP	G	G	A	rs185718718	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012659.1	+1	validated	p.P118	0.000	130	0%	90	42.2%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
GOLGB1	2804	genome.wustl.edu	37	3	121413816	121413816	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004487.3	-1	validated	p.E1847*	0.995	101	0%	97	36.1%	3	66.6%	-	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121414662	121414662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004487.3	-1	validated	p.L1565F	1.000	282	0%	275	30.2%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
WDR5B	54554	genome.wustl.edu	37	3	122134062	122134062	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019069.3	-1	reviewed	p.K105T	1.000	173	0%	191	24.6%	1	0%	benign(0.013)	tolerated(0.1)	neutral(0.287)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
SEMA5B	54437	genome.wustl.edu	37	3	122647440	122647440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031702.2	-1	validated	p.R187Q	0.999	62	0%	35	28.6%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PDIA5	10954	genome.wustl.edu	37	3	122842977	122842977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000316218	+1	known	p.R225H	0.925	81	0%	61	32.8%	49	57.1%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
PDIA5	10954	genome.wustl.edu	37	3	122880293	122880293	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000469649	+1	known	p.R75*	0.966	87	0%	57	10.5%	22	0%	-	-	-	superfamily_Thioredoxin-like
PTPLB	201562	genome.wustl.edu	37	3	123301169	123301169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198402.3	-1	provisional	p.V55F	0.999	108	0%	124	25.8%	8	12.5%	benign(0.008)	tolerated(0.42)	neutral(0.014)	NULL
UMPS	7372	genome.wustl.edu	37	3	124456609	124456609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000373.3	+1	reviewed	p.R169C	0.943	224	0%	184	33.2%	33	27.2%	benign(0.045)	deleterious(0.01)	neutral(0.408)	superfamily_PRTase-like
RHO	6010	genome.wustl.edu	37	3	129249801	129249801	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000511172	+1	known	p.R91W	0.953	98	0%	85	14.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
COL6A5	256076	genome.wustl.edu	37	3	130095474	130095474	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.S154	0.000	148	0%	136	20.6%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130095664	130095664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.D218N	0.001	89	0%	97	29.9%	0	-	benign(0.002)	-	-	NULL
COL6A5	256076	genome.wustl.edu	37	3	130188096	130188096	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512836	+1	known	p.R668*	0.691	211	0%	143	17.5%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
NUDT16	131870	genome.wustl.edu	37	3	131102043	131102043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152395.2	+1	validated	p.R116Q	1.000	200	0%	145	20.7%	75	29.3%	benign(0.151)	tolerated(0.36)	neutral(0.034)	superfamily_Nudix
DNAJC13	23317	genome.wustl.edu	37	3	132192017	132192017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.R746Q	1.000	144	1.4%	142	22.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
TF	7018	genome.wustl.edu	37	3	133485147	133485147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001063.3	+1	reviewed	p.K452N	0.956	440	0%	331	17.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
MSL2	55167	genome.wustl.edu	37	3	135870346	135870346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018133.3	-1	validated	p.K459N	1.000	128	0%	100	27%	7	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
DZIP1L	199221	genome.wustl.edu	37	3	137811259	137811259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173543.2	-1	validated	p.K279T	0.262	236	0%	295	34.2%	0	-	possibly_damaging(0.767)	deleterious(0.02)	deleterious(0.667)	NULL
ARMC8	25852	genome.wustl.edu	37	3	137940835	137940835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015396.3	+1	validated	p.P50S	1.000	377	0%	369	22.5%	6	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
PIK3CB	5291	genome.wustl.edu	37	3	138374245	138374245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006219.1	-1	provisional	p.D1067Y	1.000	140	0%	156	28.8%	16	81.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PI3Kc
TFDP2	7029	genome.wustl.edu	37	3	141678639	141678639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006286.4	-1	reviewed	p.D250Y	1.000	220	0.5%	189	19%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DP
XRN1	54464	genome.wustl.edu	37	3	142142427	142142427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019001.3	-1	validated	p.R229*	1.000	453	0%	466	23.4%	0	-	-	-	-	NULL
PLS1	5357	genome.wustl.edu	37	3	142430379	142430379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145319.1	+1	reviewed	p.L556V	1.000	229	0%	226	26.5%	14	42.8%	possibly_damaging(0.694)	tolerated(0.54)	neutral(0.257)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
SLC9A9	285195	genome.wustl.edu	37	3	143513874	143513874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173653.3	-1	reviewed	p.L168V	0.999	160	0.6%	122	27%	2	0%	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_Na_H_Exchanger
SERP1	27230	genome.wustl.edu	37	3	150263564	150263564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014445.3	-1	validated	p.R29I	1.000	172	0%	148	32.4%	410	41.9%	benign(0.427)	deleterious(0)	deleterious(0.584)	HMMPfam_RAMP4
MED12L	116931	genome.wustl.edu	37	3	150874030	150874030	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.G213	0.853	122	0%	136	18.4%	0	-	-	-	-	NULL
P2RY14	9934	genome.wustl.edu	37	3	150931428	150931428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081455.1	-1	reviewed	p.S226L	0.024	183	0%	180	30.6%	0	-	benign(0.177)	tolerated(0.25)	neutral(0.053)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
P2RY12	64805	genome.wustl.edu	37	3	151056273	151056273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022788.3	-1	reviewed	p.D121N	1.000	107	0%	98	37.8%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_7tm_1,superfamily_SSF81321
MED12L	116931	genome.wustl.edu	37	3	151090493	151090493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.S1233F	1.000	175	0%	134	34.3%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
AADACL2	344752	genome.wustl.edu	37	3	151475056	151475056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207365.3	+1	validated	p.D294Y	0.000	149	0%	140	15.7%	0	-	possibly_damaging(0.776)	deleterious(0.02)	deleterious(0.672)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
GMPS	8833	genome.wustl.edu	37	3	155628636	155628636	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003875.2	+1	reviewed	p.R228*	0.998	127	0%	145	21.4%	13	0%	-	-	-	superfamily_Class I glutamine amidotransferase-like,superfamily_Adenine nucleotide alpha hydrolases-like
IL12A	3592	genome.wustl.edu	37	3	159710816	159710816	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000882.2	+1	reviewed	p.E94D	0.503	167	0%	126	25.4%	1	100%	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_IL12,superfamily_4_helix_cytokine
PPM1L	151742	genome.wustl.edu	37	3	160474291	160474291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139245.2	+1	provisional	p.E65D	1.000	126	0%	92	26.1%	9	33.3%	possibly_damaging(0.882)	tolerated(0.48)	neutral(0.355)	NULL
PPM1L	151742	genome.wustl.edu	37	3	160786805	160786805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139245.2	+1	provisional	p.R315*	0.998	112	0%	71	14.1%	0	-	-	-	-	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
SLITRK3	22865	genome.wustl.edu	37	3	164906440	164906440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.L727I	0.000	50	0%	48	25%	0	-	benign(0.008)	tolerated(0.41)	neutral(0.015)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164908029	164908029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.S197Y	1.000	138	0%	138	37.7%	0	-	probably_damaging(0.982)	tolerated(0.14)	deleterious(0.676)	superfamily_SSF52058
ZBBX	79740	genome.wustl.edu	37	3	166958590	166958590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024687.2	-1	validated	p.K798N	0.002	309	0%	230	19.1%	5	40%	possibly_damaging(0.495)	deleterious(0)	deleterious(0.610)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167000193	167000193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024687.2	-1	validated	p.R657Q	0.001	211	0%	192	10.9%	1	100%	benign(0.07)	deleterious(0)	neutral(0.450)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167040008	167040008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024687.2	-1	validated	p.E294K	1.000	227	0%	207	24.2%	1	100%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
PDCD10	11235	genome.wustl.edu	37	3	167402162	167402162	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007217.3	-1	reviewed	p.F191	1.000	201	0%	187	15.5%	7	28.5%	-	-	-	NULL
GOLIM4	27333	genome.wustl.edu	37	3	167762666	167762666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014498.3	-1	reviewed	p.D106Y	1.000	135	0%	134	11.9%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC2A2	6514	genome.wustl.edu	37	3	170723772	170723772	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000340.1	-1	reviewed	p.Y245*	0.997	202	0%	146	25.3%	0	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
SLC2A2	6514	genome.wustl.edu	37	3	170732374	170732374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000340.1	-1	reviewed	p.E85D	0.002	365	0%	332	38.3%	0	-	probably_damaging(0.973)	tolerated(0.18)	deleterious(0.471)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
TNIK	23043	genome.wustl.edu	37	3	170819392	170819392	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.E813*	1.000	728	0%	587	30.8%	1	0%	-	-	-	NULL
MIR569	693154	genome.wustl.edu	37	3	170824481	170824481	+	RNA	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385228	-1	known	NULL	1.000	341	0%	260	21.2%	0	-	-	-	-	-
TNIK	23043	genome.wustl.edu	37	3	171087420	171087420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.Q38K	1.000	225	0%	229	17%	0	-	possibly_damaging(0.869)	tolerated(0.06)	deleterious(0.659)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ECT2	1894	genome.wustl.edu	37	3	172520673	172520673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018098.4	+1	reviewed	p.R639Q	1.000	154	0%	157	26.1%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PH domain-like
PEX5L	51555	genome.wustl.edu	37	3	179597886	179597886	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016559.1	-1	provisional	p.L112	0.988	432	0%	417	19.9%	0	-	-	-	-	NULL
ATP11B	23200	genome.wustl.edu	37	3	182553928	182553928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.R141W	1.000	300	0%	252	28.6%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
ATP11B	23200	genome.wustl.edu	37	3	182563301	182563301	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.E254*	1.000	86	0%	116	23.3%	0	-	-	-	-	superfamily_SSF81653
ATP11B	23200	genome.wustl.edu	37	3	182577014	182577014	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.S356*	1.000	241	0%	252	13.9%	1	0%	-	-	-	NULL
ATP11B	23200	genome.wustl.edu	37	3	182591616	182591616	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.R689*	1.000	208	0%	202	22.3%	1	0%	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784
KLHL24	54800	genome.wustl.edu	37	3	183368618	183368618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017644.3	+1	validated	p.F158L	1.000	164	0%	172	11.6%	7	14.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
TMEM41A	90407	genome.wustl.edu	37	3	185214713	185214713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080652.3	-1	validated	p.R59Q	0.998	60	0%	38	18.4%	8	25%	benign(0.151)	tolerated(0.46)	neutral(0.026)	NULL
C3orf65	646600	genome.wustl.edu	37	3	185434239	185434239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000296270	+1	known	p.K24N	0.226	152	0%	138	18.1%	0	-	possibly_damaging(0.952)	-	-	NULL
KNG1	3827	genome.wustl.edu	37	3	186435504	186435504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102416.2	+1	reviewed	p.R58H	0.978	153	0%	105	18.1%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
BCL6	604	genome.wustl.edu	37	3	187446312	187446312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130845.1	-1	reviewed	p.R459H	1.000	55	0%	35	11.4%	36	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
CLDN16	10686	genome.wustl.edu	37	3	190105994	190105994	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006580.3	+1	reviewed	p.K29T	0.000	162	0%	126	31%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	NULL
ACAP2	23527	genome.wustl.edu	37	3	195047656	195047656	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439758	-1	known	p.E105*	1.000	390	0%	439	23.9%	5	0%	benign(0.086)	tolerated(0.44)	neutral(0.019)	NULL
MUC4	4585	genome.wustl.edu	37	3	195493607	195493607	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000470451	-1	known	p.R4429*	0.000	96	0%	85	16.5%	15	0%	-	-	-	NULL
MFI2	4241	genome.wustl.edu	37	3	196736579	196736579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005929.4	-1	reviewed	p.G479S	0.016	33	0%	33	12.1%	5	0%	benign(0.201)	deleterious(0.03)	neutral(0.384)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
KIAA0226	9711	genome.wustl.edu	37	3	197423898	197423898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145642.2	-1	validated	p.K383N	0.960	157	0%	134	28.4%	11	27.2%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
LRCH3	84859	genome.wustl.edu	37	3	197541907	197541907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032773.2	+1	provisional	p.T131P	1.000	108	0%	138	34.8%	2	50%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_LRR_1,superfamily_SSF52058
LMLN	89782	genome.wustl.edu	37	3	197717491	197717491	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136049.2	+1	reviewed	p.R331*	1.000	298	0.3%	287	19.2%	2	0%	-	-	-	"HMMPfam_Peptidase_M8,superfamily_Metalloproteases (""zincins"") catalytic domain"
LMLN	89782	genome.wustl.edu	37	3	197765604	197765604	+	RNA	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026786.1	+1	reviewed	NULL	0.000	141	0%	148	25%	3	0%	-	-	-	-
ENSG00000186777	0	genome.wustl.edu	37	4	264504	264504	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414523	-1	known	p.K434T	0.002	26	0%	38	13.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF141	7700	genome.wustl.edu	37	4	367391	367391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000240499	+1	known	p.H389N	1.000	60	0%	49	16.3%	0	-	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF721	170960	genome.wustl.edu	37	4	435518	435518	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133474.2	-1	validated	p.K913T	0.603	220	0%	193	19.2%	2	50%	benign(0.406)	tolerated(0.26)	neutral(0.165)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POLN	353497	genome.wustl.edu	37	4	2087415	2087415	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181808.2	-1	validated	p.L708V	0.998	75	0%	58	15.5%	0	-	possibly_damaging(0.452)	tolerated(0.37)	neutral(0.167)	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases
HAUS3	79441	genome.wustl.edu	37	4	2240473	2240473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024511.5	-1	provisional	p.R403C	0.554	191	0.5%	201	22.4%	1	100%	possibly_damaging(0.827)	deleterious(0)	deleterious(0.758)	NULL
HAUS3	79441	genome.wustl.edu	37	4	2242008	2242008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024511.5	-1	provisional	p.F222L	1.000	94	0%	105	23.8%	0	-	possibly_damaging(0.743)	deleterious(0)	deleterious(0.717)	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6862935	6862935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100590.1	+1	validated	p.R276*	0.990	82	0%	106	21.7%	3	0%	-	-	-	NULL
LOC100288554	100288554	genome.wustl.edu	37	4	9424063	9424063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342446.1	+1	model	p.L58I	0.999	515	0%	518	22.6%	0	-	-	-	-	NULL
DEFB131	644414	genome.wustl.edu	37	4	9452112	9452112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040448.2	+1	validated	p.C29R	0.058	119	0%	103	31.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13602068	13602068	+	Silent	SNP	G	G	A	rs139854434	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.F2152	0.011	44	0%	54	11.1%	6	33.3%	-	-	-	superfamily_SSF81995
FAM184B	27146	genome.wustl.edu	37	4	17710886	17710886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015688.1	-1	validated	p.R175W	0.091	30	0%	15	26.7%	0	-	possibly_damaging(0.909)	deleterious(0.03)	deleterious(0.726)	NULL
NCAPG	64151	genome.wustl.edu	37	4	17830003	17830003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022346.3	+1	validated	p.E586K	1.000	181	0.6%	178	35.4%	2	0%	benign(0.313)	tolerated(0.25)	neutral(0.135)	superfamily_ARM-type_fold
SLIT2	9353	genome.wustl.edu	37	4	20525786	20525786	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.K475T	1.000	108	0%	111	28.8%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
SLIT2	9353	genome.wustl.edu	37	4	20543147	20543147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.R683I	1.000	207	0%	206	24.8%	4	50%	benign(0.127)	tolerated(0.08)	neutral(0.310)	HMMSmart_SM00082,superfamily_L domain-like
SLIT2	9353	genome.wustl.edu	37	4	20555489	20555489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.K875E	0.999	246	0%	236	32.6%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00082
SEL1L3	23231	genome.wustl.edu	37	4	25769178	25769178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015187.3	-1	validated	p.F938L	1.000	307	0%	275	20%	50	36%	benign(0)	tolerated(0.57)	neutral(0.006)	superfamily_HCP-like
CCKAR	886	genome.wustl.edu	37	4	26483761	26483761	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000730.2	-1	reviewed	p.K262N	0.000	100	0%	75	25.3%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARAP2	116984	genome.wustl.edu	37	4	36122870	36122870	+	Silent	SNP	C	C	T	rs182096270	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	p.T1275	0.980	164	0%	157	16.6%	1	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
DTHD1	401124	genome.wustl.edu	37	4	36296524	36296524	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136536.3	+1	validated	p.T212	0.957	397	0%	407	32.9%	2	50%	-	-	-	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37447780	37447780	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144990.1	+1	validated	p.E1390D	1.000	55	0%	59	22%	0	-	possibly_damaging(0.948)	tolerated(0.09)	deleterious(0.688)	HMMSmart_WD40,superfamily_WD40_like
TLR10	81793	genome.wustl.edu	37	4	38776305	38776305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017388.1	-1	reviewed	p.K303Q	0.727	178	0%	166	27.1%	1	0%	possibly_damaging(0.81)	deleterious(0.01)	deleterious(0.711)	superfamily_SSF52058
WDR19	57728	genome.wustl.edu	37	4	39254826	39254826	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025132.3	+1	reviewed	p.I930	1.000	112	0%	133	22.6%	6	50%	-	-	-	HMMPfam_Clathrin,superfamily_TPR-like
RFC1	5981	genome.wustl.edu	37	4	39290387	39290387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002913.3	-1	reviewed	p.K1146N	0.997	270	0%	352	20.2%	2	50%	possibly_damaging(0.45)	tolerated(0.13)	neutral(0.400)	NULL
KLB	152831	genome.wustl.edu	37	4	39439365	39439365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175737.3	+1	validated	p.I452T	0.195	320	0%	244	10.2%	0	-	benign(0.024)	deleterious(0.01)	neutral(0.407)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
APBB2	323	genome.wustl.edu	37	4	40818228	40818228	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173075.4	-1	reviewed	p.R698*	0.744	346	0.3%	342	34.8%	15	26.6%	-	-	-	NULL
TMEM33	55161	genome.wustl.edu	37	4	41941236	41941236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018126.2	+1	validated	p.Y55C	1.000	119	0%	94	18.1%	52	44.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0121
DCAF4L1	285429	genome.wustl.edu	37	4	41984086	41984086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029955.3	+1	validated	p.E93K	0.980	102	0%	78	43.6%	0	-	benign(0.003)	tolerated(1)	-	superfamily_WD40 repeat-like
SLC30A9	10463	genome.wustl.edu	37	4	42041010	42041010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006345.3	+1	validated	p.S226Y	0.825	332	0.3%	325	33.8%	4	25%	benign(0.003)	deleterious(0.04)	neutral(0.349)	NULL
GRXCR1	389207	genome.wustl.edu	37	4	42965083	42965083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080476.1	+1	provisional	p.E187K	1.000	289	0%	229	31.9%	0	-	possibly_damaging(0.799)	deleterious(0.04)	deleterious(0.650)	HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd
GABRA2	2555	genome.wustl.edu	37	4	46264027	46264027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000807.2	-1	reviewed	p.F325L	1.000	237	0%	202	14.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA4	2557	genome.wustl.edu	37	4	46930528	46930528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000809.2	-1	reviewed	p.R460Q	0.001	148	0%	132	10.6%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
SCFD2	152579	genome.wustl.edu	37	4	54218822	54218822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152540.3	-1	validated	p.L317P	0.991	278	0%	238	32.4%	4	50%	possibly_damaging(0.951)	tolerated(0.13)	deleterious(0.647)	NULL
KIT	3815	genome.wustl.edu	37	4	55570008	55570008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000222.2	+1	reviewed	p.A292V	1.000	216	0%	192	10.9%	0	-	possibly_damaging(0.91)	deleterious(0.04)	deleterious(0.712)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
KIT	3815	genome.wustl.edu	37	4	55592206	55592206	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093772.1	+1	reviewed	e9+2	1.000	119	0%	105	22.9%	1	100%	-	-	-	-
EXOC1	55763	genome.wustl.edu	37	4	56750025	56750025	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024924.1	+1	reviewed	p.E421*	1.000	118	0%	130	23.1%	3	0%	-	-	-	HMMPfam_Sec3
AASDH	132949	genome.wustl.edu	37	4	57221514	57221514	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181806.2	-1	validated	p.R313*	1.000	184	0%	141	14.9%	1	0%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ARL9	132946	genome.wustl.edu	37	4	57384882	57384882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206919.1	+1	validated	p.Y19H	0.986	421	0%	311	16.7%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
REST	5978	genome.wustl.edu	37	4	57797430	57797430	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005612.3	+1	reviewed	p.E802	0.001	68	0%	78	19.2%	0	-	-	-	-	NULL
CENPC1	1060	genome.wustl.edu	37	4	68378280	68378280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001812.2	-1	reviewed	p.K484N	0.397	214	0%	233	21.9%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
TMPRSS11F	389208	genome.wustl.edu	37	4	68939690	68939690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207407.2	-1	validated	p.R107Q	0.165	138	0%	119	25.2%	0	-	possibly_damaging(0.883)	tolerated(1)	neutral(0.345)	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
UGT2B17	7367	genome.wustl.edu	37	4	69433545	69433545	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077.3	-1	reviewed	p.Y220D	0.956	106	0%	77	20.8%	0	-	possibly_damaging(0.626)	tolerated(0.14)	neutral(0.468)	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B15	7366	genome.wustl.edu	37	4	69528805	69528805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076.2	-1	validated	p.S309Y	0.996	585	0.2%	512	22.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B28	54490	genome.wustl.edu	37	4	70146620	70146620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053039.1	+1	provisional	p.K134N	0.163	265	0%	271	31.4%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1B1	27284	genome.wustl.edu	37	4	70620910	70620910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014465.3	-1	reviewed	p.R9Q	0.051	133	0%	140	21.4%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
MUC7	4589	genome.wustl.edu	37	4	71347468	71347468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145006.1	+1	reviewed	p.S336L	0.000	501	0%	410	18.3%	0	-	possibly_damaging(0.873)	tolerated(0.12)	deleterious(0.600)	NULL
ENAM	10117	genome.wustl.edu	37	4	71509909	71509909	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031889.2	+1	reviewed	p.I922	0.000	114	0%	93	33.3%	0	-	-	-	-	NULL
UTP3	57050	genome.wustl.edu	37	4	71555757	71555757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020368.2	+1	validated	p.R455C	1.000	186	0%	162	13.6%	13	7.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sas10_Utp3_C
GRSF1	2926	genome.wustl.edu	37	4	71701931	71701931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002092.3	-1	reviewed	p.R153Q	1.000	121	0%	108	24.1%	95	30.5%	possibly_damaging(0.57)	deleterious(0.02)	deleterious(0.578)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ANKRD17	26057	genome.wustl.edu	37	4	73957526	73957526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.S1940L	1.000	77	0%	89	20.2%	21	47.6%	possibly_damaging(0.662)	tolerated(0.09)	deleterious(0.530)	NULL
AFP	174	genome.wustl.edu	37	4	74302892	74302892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134.1	+1	reviewed	p.S34Y	0.998	385	0%	334	17.7%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
AFM	173	genome.wustl.edu	37	4	74364849	74364849	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001133.2	+1	reviewed	p.T436	0.749	273	0%	238	33.2%	0	-	-	-	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
SDAD1	55153	genome.wustl.edu	37	4	76877273	76877273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018115.2	-1	validated	p.R624Q	1.000	564	0%	528	22%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SDA1
ENSG00000207307	0	genome.wustl.edu	37	4	77453395	77453395	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384577	-1	novel	NULL	0.073	38	0%	32	34.4%	0	-	-	-	-	-
SOWAHB	345079	genome.wustl.edu	37	4	77818086	77818086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029870.1	-1	provisional	p.T306N	0.876	24	0%	23	17.4%	1	100%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
BMP2K	55589	genome.wustl.edu	37	4	79808355	79808355	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198892.1	+1	reviewed	p.D660A	1.000	229	0%	211	20.9%	0	-	unknown(0)	deleterious(0)	-	NULL
RASGEF1B	153020	genome.wustl.edu	37	4	82377810	82377810	+	Missense_Mutation	SNP	C	C	T	rs144258756	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152545.1	-1	provisional	p.E145K	0.999	215	0%	205	34.1%	7	28.5%	benign(0.026)	tolerated(0.22)	neutral(0.043)	HMMSmart_SM00229,superfamily_Ras GEF
SEC31A	22872	genome.wustl.edu	37	4	83787987	83787987	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077207.1	-1	reviewed	p.R391*	1.000	150	0.7%	172	16.9%	21	0%	-	-	-	superfamily_WD40 repeat-like
CDS1	1040	genome.wustl.edu	37	4	85540554	85540554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001263.3	+1	reviewed	p.L150I	1.000	203	0%	200	25%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CTP_transf_1
WDFY3	23001	genome.wustl.edu	37	4	85654599	85654599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.R2386Q	1.000	160	0%	130	20.8%	4	0%	possibly_damaging(0.951)	tolerated(0.21)	neutral(0.438)	superfamily_Cyclin-like
ABCG2	9429	genome.wustl.edu	37	4	89028403	89028403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004827.2	-1	reviewed	p.V404I	0.000	192	0%	175	18.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_ABC2_membrane
PPM1K	152926	genome.wustl.edu	37	4	89190013	89190013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152542.3	-1	validated	p.R196Q	1.000	282	0.4%	215	25.6%	1	0%	possibly_damaging(0.952)	tolerated(0.3)	neutral(0.424)	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
HERC6	55008	genome.wustl.edu	37	4	89349753	89349753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017912.3	+1	validated	p.M653V	0.000	116	0%	122	27.9%	1	100%	benign(0.013)	tolerated(0.09)	neutral(0.297)	NULL
MMRN1	22915	genome.wustl.edu	37	4	90857582	90857582	+	Missense_Mutation	SNP	C	C	A	rs185952075	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007351.2	+1	reviewed	p.F917L	0.974	152	0%	139	16.5%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
GRID2	2895	genome.wustl.edu	37	4	94693573	94693573	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001510.2	+1	validated	p.S983*	1.000	76	0%	85	18.8%	0	-	-	-	-	NULL
MTTP	4547	genome.wustl.edu	37	4	100534293	100534293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000253.2	+1	reviewed	p.S738Y	0.999	281	0.4%	231	39.4%	0	-	probably_damaging(0.996)	tolerated(0.37)	deleterious(0.481)	NULL
BANK1	55024	genome.wustl.edu	37	4	102839325	102839325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017935.4	+1	reviewed	p.K395N	0.999	55	0%	63	27%	0	-	probably_damaging(0.988)	tolerated(0.05)	deleterious(0.783)	superfamily_Ankyrin repeat
MANBA	4126	genome.wustl.edu	37	4	103635610	103635610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005908.3	-1	reviewed	p.F220L	0.936	168	0%	156	15.4%	3	66.6%	benign(0.003)	tolerated(0.51)	neutral(0.009)	NULL
SLC9B2	133308	genome.wustl.edu	37	4	103988684	103988684	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178833.4	-1	validated	p.I8M	0.000	426	0%	396	22.5%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
CENPE	1062	genome.wustl.edu	37	4	104041446	104041446	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.S2396	0.050	405	0%	365	11.2%	0	-	-	-	-	NULL
CENPE	1062	genome.wustl.edu	37	4	104053868	104053868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.F2302L	0.996	172	0%	185	18.4%	0	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
CENPE	1062	genome.wustl.edu	37	4	104061538	104061538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.R1930C	0.986	234	0%	253	26.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
CENPE	1062	genome.wustl.edu	37	4	104080010	104080010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.T879A	0.950	128	0%	152	23%	0	-	possibly_damaging(0.564)	tolerated(0.59)	neutral(0.197)	NULL
SGMS2	166929	genome.wustl.edu	37	4	108829850	108829850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136257.1	+1	reviewed	p.R286Q	1.000	249	0%	172	33.7%	27	40.7%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
CYP2U1	113612	genome.wustl.edu	37	4	108868531	108868531	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183075.2	+1	reviewed	e3-1	1.000	74	0%	69	24.6%	0	-	-	-	-	-
CFI	3426	genome.wustl.edu	37	4	110670693	110670693	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000204.3	-1	reviewed	p.R336*	0.993	303	0%	285	20.7%	203	3.4%	-	-	-	superfamily_Trypsin-like serine proteases
EGF	1950	genome.wustl.edu	37	4	110885599	110885599	+	Missense_Mutation	SNP	G	G	A	rs185277473	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001963.4	+1	reviewed	p.R494Q	1.000	368	0%	327	16.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF63825
ENPEP	2028	genome.wustl.edu	37	4	111480820	111480820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001977.3	+1	validated	p.R887I	1.000	301	0%	318	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANK2	287	genome.wustl.edu	37	4	114208820	114208820	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.I713	0.963	235	0%	190	10.5%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PRSS12	8492	genome.wustl.edu	37	4	119204145	119204145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003619.2	-1	reviewed	p.D721N	0.674	313	0.3%	205	35.6%	11	81.8%	benign(0.103)	tolerated(0.39)	neutral(0.024)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
USP53	54532	genome.wustl.edu	37	4	120192462	120192462	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019050.2	+1	validated	p.E483*	0.996	37	0%	58	15.5%	1	0%	-	-	-	NULL
PRDM5	11107	genome.wustl.edu	37	4	121720897	121720897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018699.2	-1	reviewed	p.H317N	1.000	146	0.7%	148	17.6%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NDNF	79625	genome.wustl.edu	37	4	121957872	121957872	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024574.3	-1	validated	p.L418	1.000	63	0%	76	42.1%	1	0%	-	-	-	HMMPfam_DUF2369
QRFPR	84109	genome.wustl.edu	37	4	122261627	122261627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198179.2	-1	validated	p.R160Q	0.761	190	0%	142	30.3%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	HMMPfam_7tm_1,superfamily_SSF81321
BBS7	55212	genome.wustl.edu	37	4	122770018	122770018	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176824.1	-1	reviewed	p.I305	0.052	236	0%	206	25.7%	1	0%	-	-	-	NULL
ANKRD50	57182	genome.wustl.edu	37	4	125592189	125592189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020337.2	-1	validated	p.G748D	1.000	143	0%	144	13.2%	14	64.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD50	57182	genome.wustl.edu	37	4	125593522	125593522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020337.2	-1	validated	p.L304I	1.000	136	0%	118	32.2%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ANKRD50	57182	genome.wustl.edu	37	4	125600053	125600053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020337.2	-1	validated	p.L174I	1.000	116	0.9%	90	25.6%	1	100%	probably_damaging(0.972)	tolerated(0.21)	neutral(0.458)	NULL
FAT4	79633	genome.wustl.edu	37	4	126239097	126239097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.R511C	1.000	87	0%	79	35.4%	1	0%	probably_damaging(0.989)	tolerated(0.17)	deleterious(0.498)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HSPA4L	22824	genome.wustl.edu	37	4	128722949	128722949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014278.2	+1	provisional	p.A180V	1.000	258	0.4%	253	28.1%	1	100%	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	HMMPfam_HSP70,superfamily_SSF53067
TBC1D9	23158	genome.wustl.edu	37	4	141600907	141600907	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015130.2	-1	validated	p.L151	1.000	207	0%	174	24.7%	1	100%	-	-	-	HMMPfam_GRAM,HMMSmart_SM00568
RNF150	57484	genome.wustl.edu	37	4	141832470	141832470	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020724.1	-1	validated	p.F342	0.685	132	0%	115	19.1%	7	28.5%	-	-	-	NULL
HHIP	64399	genome.wustl.edu	37	4	145635477	145635477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022475.1	+1	reviewed	p.S508R	0.999	362	0%	327	28.4%	2	0%	probably_damaging(1)	tolerated(0.63)	deleterious(0.503)	superfamily_Soluble quinoprotein glucose dehydrogenase
C4orf51	646603	genome.wustl.edu	37	4	146601389	146601389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080531.1	+1	inferred	p.L12I	0.021	265	0%	201	36.8%	0	-	possibly_damaging(0.936)	-	-	NULL
TTC29	83894	genome.wustl.edu	37	4	147824873	147824873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031956.2	-1	validated	p.E137K	1.000	111	0%	102	26.5%	1	0%	probably_damaging(0.99)	tolerated(0.33)	neutral(0.466)	superfamily_TPR-like
LRBA	987	genome.wustl.edu	37	4	151749774	151749774	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	e29-1	0.916	172	0%	129	27.9%	0	-	-	-	-	-
PET112	5188	genome.wustl.edu	37	4	152629190	152629190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004564.2	-1	validated	p.R276Q	1.000	126	0%	92	20.7%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GatB_N
FBXW7	55294	genome.wustl.edu	37	4	153244091	153244091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.R689Q	1.000	361	0.3%	302	22.2%	15	6.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320
TIGD4	201798	genome.wustl.edu	37	4	153690664	153690664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145720.2	-1	reviewed	p.S498Y	1.000	51	0%	52	34.6%	0	-	possibly_damaging(0.733)	deleterious(0.01)	deleterious(0.673)	NULL
TLR2	7097	genome.wustl.edu	37	4	154626130	154626130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003264.3	+1	reviewed	p.D691Y	1.000	110	0%	96	28.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
FGA	2243	genome.wustl.edu	37	4	155508048	155508048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000508.3	-1	reviewed	p.R178Q	1.000	146	0%	123	33.3%	3	100%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Fib_alpha
GRIA2	2891	genome.wustl.edu	37	4	158257528	158257528	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	e11-1	1.000	162	0%	164	21.3%	0	-	-	-	-	-
FAM198B	51313	genome.wustl.edu	37	4	159076911	159076911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128424.1	-1	validated	p.S326Y	1.000	183	0%	136	30.9%	7	28.5%	possibly_damaging(0.546)	deleterious(0.02)	deleterious(0.569)	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160271321	160271321	+	Missense_Mutation	SNP	C	C	A	rs186800143	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014247.2	+1	validated	p.L1088I	1.000	103	0%	112	34.8%	1	100%	possibly_damaging(0.766)	deleterious(0.02)	deleterious(0.667)	NULL
TMA16	55319	genome.wustl.edu	37	4	164440507	164440507	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509657	+1	known	p.E190*	1.000	113	0%	109	23.9%	3	0%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
CLCN3	1182	genome.wustl.edu	37	4	170628251	170628251	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173872.2	+1	validated	p.R661	0.998	242	0%	194	28.4%	25	44%	-	-	-	HMMPfam_CBS
GPM6A	2823	genome.wustl.edu	37	4	176561963	176561963	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510747	-1	known	e3-1	1.000	268	0%	277	18.8%	0	-	benign(0.086)	tolerated(0.1)	neutral(0.293)	-
WDR17	116966	genome.wustl.edu	37	4	177046474	177046474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170710.4	+1	reviewed	p.V277A	1.000	263	0%	233	22.7%	0	-	possibly_damaging(0.823)	deleterious(0.01)	deleterious(0.717)	HMMSmart_WD40,superfamily_Amine_DH_B_like
WDR17	116966	genome.wustl.edu	37	4	177067288	177067288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170710.4	+1	reviewed	p.L582I	0.996	225	0%	217	28.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
WDR17	116966	genome.wustl.edu	37	4	177072989	177072989	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443118	+1	known	p.Q44K	1.000	265	0%	245	13.1%	1	100%	-	-	-	NULL
AGA	175	genome.wustl.edu	37	4	178360774	178360774	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000027.3	-1	reviewed	p.K117T	1.000	230	0%	235	35.7%	30	6.6%	benign(0.076)	tolerated(0.4)	neutral(0.021)	HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ODZ3	55714	genome.wustl.edu	37	4	183710327	183710327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.L1796I	1.000	90	0%	76	25%	0	-	benign(0.247)	tolerated(0.15)	neutral(0.266)	superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183713952	183713952	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.L2043	1.000	106	0%	74	37.8%	0	-	-	-	-	NULL
ODZ3	55714	genome.wustl.edu	37	4	183717847	183717847	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.F2424C	1.000	232	0%	202	33.7%	0	-	probably_damaging(0.98)	deleterious(0.05)	deleterious(0.769)	NULL
TRAPPC11	60684	genome.wustl.edu	37	4	184601289	184601289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021942.4	+1	validated	p.D328Y	1.000	143	0%	165	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDLIM3	27295	genome.wustl.edu	37	4	186435941	186435941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114107.2	-1	reviewed	p.S145L	1.000	192	0%	143	24.5%	0	-	benign(0.313)	deleterious(0.02)	deleterious(0.481)	HMMSmart_ZM
KLKB1	3818	genome.wustl.edu	37	4	187155125	187155125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000892.3	+1	reviewed	p.D81N	1.000	263	0%	233	24.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1
ZFP42	132625	genome.wustl.edu	37	4	188924605	188924605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174900.3	+1	validated	p.R215Q	0.988	152	0%	120	21.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
SLC9A3	6550	genome.wustl.edu	37	5	488464	488464	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004174.2	-1	validated	p.F214	0.961	24	0%	19	47.4%	1	100%	-	-	-	HMMPfam_Na_H_Exchanger
IRX4	50805	genome.wustl.edu	37	5	1879775	1879775	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016358.2	-1	validated	p.F193	0.998	151	0%	106	16%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
KIAA0947	23379	genome.wustl.edu	37	5	5463178	5463178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.S1244L	0.000	79	0%	73	19.2%	0	-	benign(0.039)	deleterious(0.04)	neutral(0.351)	NULL
UBE2QL1	134111	genome.wustl.edu	37	5	6491376	6491376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145161.1	+1	provisional	p.R134C	1.000	125	0%	115	25.2%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
CTNND2	1501	genome.wustl.edu	37	5	11082812	11082812	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.L928	0.995	91	0%	79	20.3%	9	44.4%	-	-	-	superfamily_ARM repeat
DNAH5	1767	genome.wustl.edu	37	5	13870926	13870926	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.E1262*	1.000	192	0.5%	213	21.6%	0	-	-	-	-	superfamily_Spectrin
CDH18	1016	genome.wustl.edu	37	5	19838916	19838916	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004934.3	-1	reviewed	p.F60	1.000	290	0%	254	23.6%	0	-	-	-	-	superfamily_Cadherin
PDZD2	23037	genome.wustl.edu	37	5	31799520	31799520	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.S55	0.000	72	0%	64	10.9%	0	-	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32090728	32090728	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.L2392	0.975	59	0%	31	25.8%	1	0%	-	-	-	NULL
TTC23L	153657	genome.wustl.edu	37	5	34864600	34864600	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144725.3	+1	validated	p.E199*	0.303	176	0.6%	202	24.3%	0	-	-	-	-	superfamily_TPR-like
AGXT2	64902	genome.wustl.edu	37	5	34998865	34998865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031900.3	-1	reviewed	p.R502C	0.953	655	0%	578	10.6%	0	-	benign(0.051)	deleterious(0.01)	neutral(0.409)	superfamily_PyrdxlP-dep_Trfase_major
SPEF2	79925	genome.wustl.edu	37	5	35759764	35759764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.F1188C	0.929	140	0%	108	17.6%	0	-	possibly_damaging(0.94)	tolerated(0.18)	neutral(0.441)	NULL
UGT3A1	133688	genome.wustl.edu	37	5	35965779	35965779	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152404.3	-1	validated	p.V184	0.890	150	0%	154	27.3%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT3A2	167127	genome.wustl.edu	37	5	36039639	36039639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174914.3	-1	validated	p.D339N	0.835	140	0%	108	28.7%	0	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	HMMPfam_UDPGT,superfamily_SSF53756
SLC1A3	6507	genome.wustl.edu	37	5	36608597	36608597	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004172.4	+1	reviewed	p.K24	0.879	137	0%	143	23.1%	1	0%	-	-	-	NULL
NIPBL	25836	genome.wustl.edu	37	5	37059185	37059185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.E2535K	1.000	282	0%	295	32.5%	3	0%	possibly_damaging(0.724)	tolerated(0.17)	neutral(0.322)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37224780	37224780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508244	-1	known	p.R785Q	0.001	326	0.3%	304	21.7%	0	-	benign(0.006)	tolerated(0.79)	neutral(0.001)	NULL
LIFR	3977	genome.wustl.edu	37	5	38489298	38489298	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.S739	0.003	238	0%	211	21.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38502875	38502875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.E488D	0.381	113	0%	95	28.4%	0	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
C9	735	genome.wustl.edu	37	5	39316095	39316095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001737.3	-1	reviewed	p.E218K	1.000	169	0%	145	22.8%	0	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
PRKAA1	5562	genome.wustl.edu	37	5	40765114	40765114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206907.3	-1	reviewed	p.D365Y	1.000	171	0%	146	15.1%	4	75%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PRKAA1	5562	genome.wustl.edu	37	5	40798287	40798287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206907.3	-1	reviewed	p.R2H	1.000	48	0%	40	35%	0	-	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	superfamily_Kinase_like
CARD6	84674	genome.wustl.edu	37	5	40843572	40843572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.E201A	0.995	85	0%	69	33.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C6	729	genome.wustl.edu	37	5	41159278	41159278	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000065.2	-1	reviewed	p.E588*	0.001	273	0%	204	26%	3	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
ZNF131	7690	genome.wustl.edu	37	5	43173452	43173452	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003432.1	+1	validated	p.E329*	1.000	177	0%	150	29.3%	2	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MRPS30	10884	genome.wustl.edu	37	5	44811233	44811233	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016640.3	+1	reviewed	p.R242*	1.000	217	0.5%	189	31.2%	7	14.2%	-	-	-	HMMPfam_PDCD9
ITGA1	3672	genome.wustl.edu	37	5	52157295	52157295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181501.1	+1	reviewed	p.S66Y	1.000	334	0%	307	33.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_Int_alpha,superfamily_SSF69318
ITGA1	3672	genome.wustl.edu	37	5	52216207	52216207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181501.1	+1	reviewed	p.R734Q	1.000	197	0%	170	17.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
HSPB3	8988	genome.wustl.edu	37	5	53751676	53751676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006308.1	+1	provisional	p.E19D	0.975	105	0%	80	12.5%	0	-	possibly_damaging(0.533)	tolerated(0.19)	neutral(0.229)	superfamily_HSP20-like chaperones
SNX18	112574	genome.wustl.edu	37	5	53814696	53814696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052870.2	+1	reviewed	p.T305M	1.000	49	0%	34	11.8%	54	7.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CDC20B	166979	genome.wustl.edu	37	5	54416281	54416281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152623.2	-1	validated	p.S438N	0.851	237	0%	228	20.2%	30	53.3%	benign(0.001)	tolerated(0.43)	neutral(0.013)	superfamily_WD40_like
IL6ST	3572	genome.wustl.edu	37	5	55250735	55250735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002184.2	-1	reviewed	p.K451N	0.032	198	0%	161	25.5%	6	0%	benign(0)	tolerated(0.68)	neutral(0.002)	PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ADAMTS6	11174	genome.wustl.edu	37	5	64766614	64766614	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197941.2	-1	reviewed	p.C151	1.000	122	0%	139	20.1%	1	100%	-	-	-	HMMPfam_Pep_M12B_propep
PIK3R1	5295	genome.wustl.edu	37	5	67588951	67588951	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.R348*	1.000	218	0%	205	31.7%	37	32.4%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PIK3R1	5295	genome.wustl.edu	37	5	67591146	67591146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.Y580C	1.000	315	0%	270	14.4%	98	33.6%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
CCDC125	202243	genome.wustl.edu	37	5	68581262	68581262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176816.3	-1	validated	p.G378R	0.995	158	0%	136	23.5%	4	75%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	NULL
ZNF366	167465	genome.wustl.edu	37	5	71757279	71757279	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152625.1	-1	provisional	p.F15	0.001	8	0.000	16	0.438	1	0%	-	-	-	NULL
RGNEF	64283	genome.wustl.edu	37	5	73190251	73190251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080479.2	+1	reviewed	p.A1231V	0.053	185	0.5%	130	12.3%	5	20%	benign(0.012)	tolerated(0.23)	neutral(0.042)	NULL
ENC1	8507	genome.wustl.edu	37	5	73931885	73931885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003633.2	-1	validated	p.K142N	1.000	73	0%	57	21.1%	14	50%	benign(0.012)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
NSA2	10412	genome.wustl.edu	37	5	74069801	74069801	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014886.3	+1	provisional	p.L211V	0.098	182	0%	178	16.9%	138	29.7%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Ribosomal_S8e
FAM169A	26049	genome.wustl.edu	37	5	74077762	74077762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015566.1	-1	validated	p.E512D	0.881	66	0%	68	26.5%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SV2C	22987	genome.wustl.edu	37	5	75427709	75427709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014979.1	+1	provisional	p.S45F	1.000	274	0%	247	32.8%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	superfamily_MFS_gen_substrate_transporter
AGGF1	55109	genome.wustl.edu	37	5	76342240	76342240	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018046.3	+1	validated	p.F313	0.875	151	0%	137	24.8%	0	-	-	-	-	NULL
ARSB	411	genome.wustl.edu	37	5	78181427	78181427	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000046.3	-1	reviewed	p.F374	0.999	93	0%	62	35.5%	12	16.6%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
CMYA5	202333	genome.wustl.edu	37	5	79030828	79030828	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.E2080	0.001	38	0%	41	12.2%	0	-	-	-	-	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79733161	79733161	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105251.1	+1	validated	p.Y219*	0.946	18	0%	42	21.4%	1	0%	-	-	-	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79773161	79773161	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105251.1	+1	validated	p.E1529*	1.000	208	0%	171	19.9%	2	50%	-	-	-	NULL
ANKRD34B	340120	genome.wustl.edu	37	5	79854371	79854371	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004441.2	-1	validated	p.E490*	1.000	140	0%	114	33.3%	0	-	-	-	-	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80497155	80497155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006909.1	+1	validated	p.E934K	1.000	114	0%	97	32%	0	-	possibly_damaging(0.858)	deleterious(0.02)	deleterious(0.714)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
GPR98	84059	genome.wustl.edu	37	5	90040938	90040938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.V3542A	0.197	430	0.2%	376	20.2%	0	-	benign(0.069)	tolerated(0.1)	neutral(0.291)	NULL
GPR98	84059	genome.wustl.edu	37	5	90074406	90074406	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.R4277*	0.229	77	0%	60	33.3%	1	0%	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90106339	90106339	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.E5088*	0.997	59	0%	54	20.4%	0	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
KIAA0825	285600	genome.wustl.edu	37	5	93739393	93739393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145678.1	-1	validated	p.S923Y	0.000	199	0%	160	13.8%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
TTC37	9652	genome.wustl.edu	37	5	94805499	94805499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014639.2	-1	provisional	p.R1494H	0.988	123	0%	125	24%	20	30%	probably_damaging(0.965)	tolerated(0.16)	neutral(0.466)	NULL
GIN1	54826	genome.wustl.edu	37	5	102433119	102433119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017676.2	-1	validated	p.H303N	0.001	197	0%	205	19.5%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
PPIP5K2	23262	genome.wustl.edu	37	5	102484981	102484981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015216.2	+1	provisional	p.E290D	1.000	204	0.5%	204	18.6%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56059
MAN2A1	4124	genome.wustl.edu	37	5	109120509	109120509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002372.2	+1	reviewed	p.L548I	1.000	211	0%	227	32.6%	1	0%	benign(0.045)	tolerated(0.41)	neutral(0.017)	HMMPfam_Alpha-mann_mid,superfamily_SSF88688
APC	324	genome.wustl.edu	37	5	112176873	112176873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.S1861Y	1.000	300	0%	313	10.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_APC_crr
APC	324	genome.wustl.edu	37	5	112179312	112179312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.S2674Y	1.000	101	0%	103	33%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_EB1_binding
CCDC112	153733	genome.wustl.edu	37	5	114605433	114605433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040440.2	-1	validated	p.Q465H	1.000	483	0%	560	18.6%	0	-	benign(0.025)	deleterious(0.01)	neutral(0.407)	NULL
FEM1C	56929	genome.wustl.edu	37	5	114860292	114860292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020177.2	-1	validated	p.V523I	1.000	211	0%	205	25.4%	18	38.8%	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
DMXL1	1657	genome.wustl.edu	37	5	118451946	118451946	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.E220*	1.000	237	0%	227	35.2%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
DMXL1	1657	genome.wustl.edu	37	5	118483022	118483022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.L923R	0.001	154	0%	165	24.2%	0	-	benign(0.002)	tolerated(0.6)	neutral(0.004)	superfamily_WD40 repeat-like
DMXL1	1657	genome.wustl.edu	37	5	118485628	118485628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.R1369H	0.990	166	0.6%	142	14.1%	2	0%	possibly_damaging(0.925)	deleterious(0.03)	deleterious(0.738)	NULL
ZNF474	133923	genome.wustl.edu	37	5	121487909	121487909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207317.1	+1	provisional	p.R75I	0.000	48	0%	74	20.3%	0	-	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	NULL
CSNK1G3	1456	genome.wustl.edu	37	5	122893236	122893236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044723.1	+1	validated	p.F89	1.000	142	0%	208	31.7%	3	33.3%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
CTXN3	613212	genome.wustl.edu	37	5	126993275	126993275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048252.2	+1	validated	p.S21Y	1.000	120	0%	114	28.1%	0	-	benign(0)	tolerated(1)	-	NULL
ADAMTS19	171019	genome.wustl.edu	37	5	128932270	128932270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.G458E	1.000	223	0%	259	36.7%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
FNIP1	96459	genome.wustl.edu	37	5	131007511	131007511	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133372.2	-1	validated	p.K876Q	0.998	182	0%	168	20.8%	0	-	benign(0.344)	tolerated(0.24)	neutral(0.146)	NULL
ACSL6	23305	genome.wustl.edu	37	5	131312412	131312412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009185.1	-1	validated	p.N307D	1.000	70	0%	80	37.5%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801
HSPA4	3308	genome.wustl.edu	37	5	132422479	132422479	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002154.3	+1	validated	p.K305T	1.000	257	0%	265	33.6%	23	39.1%	benign(0.11)	tolerated(0.08)	neutral(0.308)	HMMPfam_HSP70,superfamily_SSF53067
LECT2	3950	genome.wustl.edu	37	5	135287028	135287028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002302.2	-1	reviewed	p.I58S	0.965	200	0%	165	36.4%	0	-	benign(0.07)	deleterious(0)	neutral(0.450)	HMMPfam_Peptidase_M23
TRPC7	57113	genome.wustl.edu	37	5	135561813	135561813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513104	-1	known	p.R724I	1.000	261	0.4%	230	27.8%	0	-	benign(0.065)	tolerated(0.2)	neutral(0.053)	NULL
ETF1	2107	genome.wustl.edu	37	5	137844488	137844488	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004730.2	-1	validated	p.E367	1.000	278	0%	260	34.2%	9	88.8%	-	-	-	HMMPfam_eRF1_3,superfamily_L30e-like
CTNNA1	1495	genome.wustl.edu	37	5	138240092	138240092	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001903.2	+1	validated	p.R451*	1.000	287	0%	243	28.8%	94	2.1%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
TMEM173	340061	genome.wustl.edu	37	5	138858075	138858075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198282.2	-1	validated	p.R180Q	0.000	102	0%	69	18.8%	116	39.6%	benign(0.001)	tolerated(0.71)	neutral(0.002)	NULL
PCDHA8	56140	genome.wustl.edu	37	5	140222682	140222682	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.A592	0.382	72	0%	45	35.6%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140223265	140223265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.E787K	0.001	87	0%	64	18.8%	0	-	benign(0.009)	tolerated(0.59)	neutral(0.005)	NULL
PCDHA9	9752	genome.wustl.edu	37	5	140228494	140228494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.K138N	0.008	177	0%	119	26.9%	0	-	benign(0.055)	tolerated(0.3)	neutral(0.032)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256263	140256263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.K402N	0.967	105	0%	82	22%	0	-	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC1	56135	genome.wustl.edu	37	5	140307027	140307027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018898.3	+1	reviewed	p.E184K	0.992	25	0%	41	17.1%	2	0%	possibly_damaging(0.932)	tolerated(0.07)	deleterious(0.698)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347479	140347479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018899.5	+1	reviewed	p.E376D	1.000	37	0%	36	13.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHB6	56130	genome.wustl.edu	37	5	140531026	140531026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.E396D	0.001	180	0%	138	21.7%	0	-	benign(0.016)	tolerated(0.38)	neutral(0.018)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140573643	140573643	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018930.3	+1	reviewed	p.I506	1.000	129	0%	99	10.1%	7	57.1%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140595020	140595020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018933.2	+1	reviewed	p.A442V	0.487	144	0%	101	29.7%	2	50%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
TAF7	6879	genome.wustl.edu	37	5	140699581	140699581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005642.2	-1	reviewed	p.E11K	1.000	258	0%	175	36%	133	45.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140735052	140735052	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018917.2	+1	reviewed	p.L95	0.998	72	0%	71	28.2%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140745836	140745836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.E647K	0.714	31	0%	19	26.3%	3	33.3%	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140763276	140763276	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018920.2	+1	reviewed	p.D270	0.961	64	1.6%	61	11.5%	5	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140763305	140763305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018920.2	+1	reviewed	p.S280Y	1.000	71	0%	72	41.7%	2	0%	benign(0.011)	tolerated(0.13)	neutral(0.253)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140768003	140768003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.E184D	0.001	72	0%	76	11.8%	0	-	benign(0.003)	tolerated(0.45)	neutral(0.012)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC3	5098	genome.wustl.edu	37	5	140856619	140856619	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002588.2	+1	reviewed	p.F312	0.759	56	0%	42	26.2%	33	30.3%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH12	51294	genome.wustl.edu	37	5	141325240	141325240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016580.2	-1	reviewed	p.F1087L	1.000	47	0%	35	14.3%	9	0%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
NR3C1	2908	genome.wustl.edu	37	5	142662143	142662143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024094.1	-1	reviewed	p.S725Y	1.000	204	0%	184	14.1%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
NR3C1	2908	genome.wustl.edu	37	5	142779985	142779985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024094.1	-1	reviewed	p.K140N	1.000	85	0%	74	18.9%	2	0%	probably_damaging(0.984)	tolerated(0.45)	neutral(0.443)	HMMPfam_GCR
RBM27	54439	genome.wustl.edu	37	5	145651214	145651214	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018989.1	+1	validated	p.E989*	1.000	166	0%	130	36.2%	3	0%	-	-	-	NULL
SPINK5	11005	genome.wustl.edu	37	5	147503468	147503468	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127698.1	+1	reviewed	p.R871*	1.000	201	0%	164	27.4%	0	-	-	-	-	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
ADRB2	154	genome.wustl.edu	37	5	148207410	148207410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000024.5	+1	reviewed	p.L339R	0.999	120	0%	100	21%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Family A G protein-coupled receptor-like
ABLIM3	22885	genome.wustl.edu	37	5	148577948	148577948	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014945.2	+1	validated	p.F106	0.800	50	0%	36	16.7%	2	50%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
AFAP1L1	134265	genome.wustl.edu	37	5	148712350	148712350	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152406.2	+1	validated	p.L690	1.000	35	0%	28	39.3%	5	20%	-	-	-	NULL
NDST1	3340	genome.wustl.edu	37	5	149927918	149927918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001543.4	+1	validated	p.E762K	1.000	29	0%	19	21.1%	34	5.8%	benign(0.042)	deleterious(0.01)	neutral(0.408)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAT2	2196	genome.wustl.edu	37	5	150922621	150922621	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.P2689	0.934	88	0%	97	20.6%	0	-	-	-	-	HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases
FAT2	2196	genome.wustl.edu	37	5	150925305	150925305	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.E1795*	0.976	81	0%	93	25.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150947261	150947261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.R411Q	0.028	133	0%	117	18.8%	0	-	benign(0.148)	tolerated(0.53)	neutral(0.020)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150947852	150947852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.R214Q	0.000	55	0%	42	14.3%	2	50%	probably_damaging(0.997)	tolerated(0.35)	deleterious(0.487)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
G3BP1	10146	genome.wustl.edu	37	5	151170476	151170476	+	Missense_Mutation	SNP	A	A	C	rs61732687		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005754.2	+1	reviewed	p.Q68H	0.998	158	0%	124	15.3%	110	13.6%	benign(0.153)	deleterious(0)	neutral(0.458)	HMMPfam_NTF2,superfamily_NTF2-like
NMUR2	56923	genome.wustl.edu	37	5	151784412	151784412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020167.4	-1	reviewed	p.A88V	0.999	87	0%	83	31.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MFAP3	4238	genome.wustl.edu	37	5	153432575	153432575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005927.4	+1	validated	p.R131C	0.005	226	0%	241	31.5%	17	52.9%	probably_damaging(0.967)	tolerated(0.17)	neutral(0.468)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CYFIP2	26999	genome.wustl.edu	37	5	156741400	156741400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037332.2	+1	validated	p.R387C	1.000	109	0%	68	26.5%	14	50%	benign(0.085)	deleterious(0.04)	neutral(0.355)	HMMPfam_FragX_IP
FNDC9	408263	genome.wustl.edu	37	5	156770166	156770166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001343.3	-1	validated	p.V127I	0.916	62	0%	39	30.8%	0	-	benign(0.017)	tolerated(0.54)	neutral(0.008)	NULL
EBF1	1879	genome.wustl.edu	37	5	158141167	158141167	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024007.3	-1	validated	p.A383	0.177	238	0%	186	16.7%	2	0%	-	-	-	NULL
CCNJL	79616	genome.wustl.edu	37	5	159682662	159682662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024565.5	-1	validated	p.A261T	1.000	69	0%	79	13.9%	1	0%	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
MIR146A	406938	genome.wustl.edu	37	5	159912382	159912382	+	RNA	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385201	+1	known	NULL	1.000	164	0%	147	26.5%	1	100%	-	-	-	-
ATP10B	23120	genome.wustl.edu	37	5	160039884	160039884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.I901S	1.000	88	0%	52	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like
DOCK2	1794	genome.wustl.edu	37	5	169139167	169139167	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004946.2	+1	validated	p.K533	0.603	238	0%	198	22.2%	6	0%	-	-	-	NULL
KCNIP1	30820	genome.wustl.edu	37	5	170159896	170159896	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034837.1	+1	reviewed	p.D187	0.745	109	0%	82	9.8%	0	-	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
C5orf25	375484	genome.wustl.edu	37	5	175716912	175716912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420396	+1	known	p.P110S	0.436	64	0%	61	18%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
C5orf25	375484	genome.wustl.edu	37	5	175722101	175722101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198567.4	+1	validated	p.E66D	1.000	141	0%	125	20%	1	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
C5orf25	375484	genome.wustl.edu	37	5	175763732	175763732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198567.4	+1	validated	p.F293L	1.000	226	0%	191	21.5%	2	100%	benign(0.287)	tolerated(0.8)	neutral(0.089)	NULL
FAM193B	54540	genome.wustl.edu	37	5	176959483	176959483	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019057.3	-1	validated	p.F299	1.000	25	0%	24	33.3%	21	42.8%	-	-	-	NULL
ZNF354B	117608	genome.wustl.edu	37	5	178310561	178310561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058230.2	+1	validated	p.R370C	0.212	212	0.5%	206	22.8%	2	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354C	30832	genome.wustl.edu	37	5	178506423	178506423	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014594.1	+1	provisional	p.C330	0.362	143	0%	105	19%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RASGEF1C	255426	genome.wustl.edu	37	5	179548099	179548099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175062.3	-1	validated	p.F255L	1.000	171	0%	113	31.9%	1	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
CNOT6	57472	genome.wustl.edu	37	5	179996326	179996326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015455.3	+1	reviewed	p.S415Y	1.000	104	0%	135	14.1%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
HUS1B	135458	genome.wustl.edu	37	6	656329	656329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148959.3	-1	reviewed	p.N206H	0.317	84	0%	109	18.3%	0	-	probably_damaging(0.991)	tolerated(0.14)	deleterious(0.694)	HMMPfam_Hus1
BPHL	670	genome.wustl.edu	37	6	3127554	3127554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004332.2	+1	reviewed	p.R97Q	0.999	214	0.5%	179	26.3%	15	13.3%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
PXDC1	221749	genome.wustl.edu	37	6	3723874	3723874	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380277	-1	known	p.S173L	0.505	180	0%	129	10.9%	18	0%	-	-	-	NULL
FAM217A	222826	genome.wustl.edu	37	6	4069218	4069218	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173563.1	-1	predicted	p.E413	0.252	223	0%	208	14.4%	0	-	-	-	-	NULL
RREB1	6239	genome.wustl.edu	37	6	7229303	7229303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003699.3	+1	reviewed	p.A324V	1.000	71	0%	50	16%	23	30.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CAGE1	285782	genome.wustl.edu	37	6	7373959	7373959	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205864.2	-1	validated	p.I229L	0.991	332	0%	288	18.8%	0	-	benign(0.016)	tolerated(0.38)	neutral(0.018)	NULL
DSP	1832	genome.wustl.edu	37	6	7584869	7584869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.K2458N	0.965	170	0%	149	12.1%	29	37.9%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Plectin,HMMSmart_SM00250
EEF1E1	9521	genome.wustl.edu	37	6	8102693	8102693	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004280.4	-1	reviewed	p.K21T	1.000	140	0%	79	27.8%	16	56.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TFAP2A	7020	genome.wustl.edu	37	6	10398754	10398754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003220.2	-1	reviewed	p.E404K	1.000	223	0%	162	27.8%	7	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TF_AP-2
ELOVL2	54898	genome.wustl.edu	37	6	10990671	10990671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017770.3	-1	validated	p.F170L	1.000	156	0%	110	29.1%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_ELO
NEDD9	4739	genome.wustl.edu	37	6	11191135	11191135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142393.1	-1	validated	p.V323I	0.603	59	0%	61	34.4%	11	63.6%	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
TBC1D7	51256	genome.wustl.edu	37	6	13316874	13316874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143964.1	-1	validated	p.D150N	1.000	261	0%	200	17%	59	30.5%	probably_damaging(0.993)	tolerated(0.06)	deleterious(0.772)	NULL
TBC1D7	51256	genome.wustl.edu	37	6	13327103	13327103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143964.1	-1	validated	p.R10C	1.000	209	0.5%	224	20.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM38	10475	genome.wustl.edu	37	6	25969632	25969632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006355.2	+1	reviewed	p.R164Q	0.021	135	0%	132	20.5%	6	33.3%	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
HFE	3077	genome.wustl.edu	37	6	26091204	26091204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000410.3	+1	reviewed	p.R71Q	0.001	253	0.4%	197	36%	7	14.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
HIST1H1D	3007	genome.wustl.edu	37	6	26234935	26234935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005320.2	-1	reviewed	p.K76R	1.000	133	0%	111	24.3%	0	-	possibly_damaging(0.849)	deleterious(0.04)	deleterious(0.675)	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
BTN3A1	11119	genome.wustl.edu	37	6	26406403	26406403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007048.5	+1	validated	p.A118T	0.069	395	0%	283	12%	71	2.8%	possibly_damaging(0.895)	tolerated(0.09)	deleterious(0.649)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BTN3A3	10384	genome.wustl.edu	37	6	26444392	26444392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006994.4	+1	validated	p.S98L	0.000	432	0%	344	15.1%	134	5.9%	benign(0.016)	tolerated(0.1)	neutral(0.287)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ZNF322	79692	genome.wustl.edu	37	6	26637844	26637844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024639.3	-1	validated	p.R313I	1.000	444	0%	346	18.8%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
POM121L2	94026	genome.wustl.edu	37	6	27277041	27277041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444565	-1	known	p.A970V	1.000	103	0%	85	11.8%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
ZNF192P1	651302	genome.wustl.edu	37	6	28134733	28134733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145129.1	+1	provisional	p.C133R	0.988	221	0%	168	19.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PGBD1	84547	genome.wustl.edu	37	6	28268962	28268962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032507.3	+1	reviewed	p.S444Y	1.000	288	0%	210	21%	0	-	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	NULL
ZNF323	64288	genome.wustl.edu	37	6	28294230	28294230	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135215.1	-1	validated	p.R312*	0.000	90	1.1%	68	27.9%	36	41.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GPX6	257202	genome.wustl.edu	37	6	28473553	28473553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182701.1	-1	reviewed	p.V129A	1.000	162	0%	166	19.3%	0	-	possibly_damaging(0.807)	tolerated(0.58)	neutral(0.309)	HMMPfam_GSHPx,superfamily_Thioredoxin-like
OR2J3	442186	genome.wustl.edu	37	6	29079757	29079757	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005216.2	+1	validated	p.I30	0.958	20	0%	21	28.6%	0	-	-	-	-	superfamily_SSF81321
MOG	4340	genome.wustl.edu	37	6	29635428	29635428	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002433.4	+1	reviewed	p.R187*	0.184	366	0%	335	10.7%	0	-	-	-	-	NULL
HLA-A	3105	genome.wustl.edu	37	6	29910631	29910631	+	Silent	SNP	C	C	T	rs41548421		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002116.6	+1	reviewed	p.F57	0.994	121	0%	101	10.9%	3547	5%	-	-	-	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
AGER	177	genome.wustl.edu	37	6	32148963	32148963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136.3	-1	reviewed	p.S391L	0.939	192	0%	162	32.1%	2	50%	benign(0.071)	deleterious(0.04)	neutral(0.354)	NULL
COL11A2	1302	genome.wustl.edu	37	6	33156927	33156927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080680.2	-1	reviewed	p.R91W	0.998	79	0%	81	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
LHFPL5	222662	genome.wustl.edu	37	6	35773618	35773618	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182548.3	+1	reviewed	p.P57	0.154	161	0%	119	21.8%	0	-	-	-	-	HMMPfam_L_HGMIC_fpl
SLC26A8	116369	genome.wustl.edu	37	6	35919090	35919090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052961.2	-1	reviewed	p.F774L	1.000	179	0%	129	35.7%	0	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
SLC26A8	116369	genome.wustl.edu	37	6	35927285	35927285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052961.2	-1	reviewed	p.K605N	0.000	125	0%	140	33.6%	0	-	benign(0.049)	deleterious(0.01)	neutral(0.409)	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
MAPK14	1432	genome.wustl.edu	37	6	36070398	36070398	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001315.2	+1	reviewed	p.A271	1.000	363	0%	297	15.8%	14	7.1%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CPNE5	57699	genome.wustl.edu	37	6	36712049	36712049	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020939.1	-1	reviewed	p.F495	0.978	103	0%	69	20.3%	43	0%	-	-	-	HMMSmart_VWA,superfamily_SSF53300
RNF8	9025	genome.wustl.edu	37	6	37336437	37336437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003958.3	+1	reviewed	p.N140D	0.009	82	0%	87	29.9%	2	50%	benign(0.139)	tolerated(0.32)	neutral(0.036)	NULL
FTSJD2	23070	genome.wustl.edu	37	6	37440242	37440242	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015050.2	+1	validated	p.S556	1.000	220	0%	193	31.1%	16	31.2%	-	-	-	NULL
KCNK17	89822	genome.wustl.edu	37	6	39271749	39271749	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031460.3	-1	reviewed	p.F224	0.999	63	0%	59	32.2%	1	0%	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
TRERF1	55809	genome.wustl.edu	37	6	42224839	42224839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033502.2	-1	reviewed	p.R780C	1.000	262	0%	272	16.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF318	24149	genome.wustl.edu	37	6	43323214	43323214	+	Missense_Mutation	SNP	G	G	T	rs145555771		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014345.2	-1	validated	p.H620N	1.000	103	0%	74	18.9%	15	53.3%	possibly_damaging(0.902)	deleterious(0.02)	deleterious(0.740)	NULL
LRRC73	221424	genome.wustl.edu	37	6	43475245	43475245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012974.1	-1	predicted	p.R277W	0.001	41	0%	34	35.3%	11	27.2%	possibly_damaging(0.94)	deleterious(0.02)	deleterious(0.768)	superfamily_SSF52047
HSP90AB1	3326	genome.wustl.edu	37	6	44219245	44219245	+	Missense_Mutation	SNP	G	G	A	rs3811820		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007355.2	+1	provisional	p.R405H	1.000	124	0%	104	26%	96	37.5%	benign(0.039)	deleterious(0)	neutral(0.447)	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_HSP90
SLC35B2	347734	genome.wustl.edu	37	6	44223056	44223056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178148.2	-1	validated	p.L229R	1.000	78	0%	68	26.5%	72	19.4%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE
TDRD6	221400	genome.wustl.edu	37	6	46658405	46658405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.V847G	0.926	162	0%	163	17.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
CRISP1	167	genome.wustl.edu	37	6	49803073	49803073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131.2	-1	reviewed	p.L236I	0.000	333	0%	268	20.9%	0	-	benign(0.005)	tolerated(0.16)	neutral(0.059)	HMMPfam_Crisp
TFAP2B	7021	genome.wustl.edu	37	6	50791385	50791385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003221.3	+1	reviewed	p.S116L	0.923	98	0%	87	18.4%	0	-	benign(0.014)	tolerated(0.29)	neutral(0.030)	NULL
HMGCLL1	54511	genome.wustl.edu	37	6	55378918	55378918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019036.2	-1	validated	p.S187F	1.000	168	0%	169	11.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HMGL-like,superfamily_Aldolase
HMGCLL1	54511	genome.wustl.edu	37	6	55406884	55406884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019036.2	-1	validated	p.P85S	1.000	247	0%	258	26%	0	-	possibly_damaging(0.523)	deleterious(0)	deleterious(0.621)	superfamily_Aldolase
PHF3	23469	genome.wustl.edu	37	6	64408382	64408382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.K957Q	1.000	72	0%	101	12.9%	1	100%	possibly_damaging(0.732)	tolerated(0.09)	deleterious(0.564)	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
EYS	346007	genome.wustl.edu	37	6	64694374	64694374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.F2319L	0.938	196	0%	172	37.8%	0	-	benign(0.014)	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	65300172	65300172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.S1863F	0.001	174	0%	150	10.7%	0	-	possibly_damaging(0.819)	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	65300455	65300455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.D1769Y	0.090	124	0%	113	17.7%	0	-	probably_damaging(0.976)	-	-	superfamily_Concanavalin A-like lectins/glucanases
BAI3	577	genome.wustl.edu	37	6	69349111	69349111	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.E182*	1.000	48	0%	39	25.6%	0	-	-	-	-	NULL
BAI3	577	genome.wustl.edu	37	6	69666668	69666668	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.E498*	1.000	318	0%	195	16.4%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
KCNQ5	56479	genome.wustl.edu	37	6	73834236	73834236	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019842.3	+1	reviewed	e9+1	1.000	348	0%	312	21.2%	0	-	-	-	-	-
PHIP	55023	genome.wustl.edu	37	6	79655764	79655764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017934.5	-1	validated	p.K1528N	0.998	268	0%	241	11.2%	0	-	probably_damaging(0.978)	tolerated(0.15)	deleterious(0.661)	NULL
IBTK	25998	genome.wustl.edu	37	6	82924199	82924199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.R650I	1.000	190	0%	191	32.5%	0	-	benign(0.022)	tolerated(0.14)	neutral(0.251)	HMMSmart_SM00225
IBTK	25998	genome.wustl.edu	37	6	82924473	82924473	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.E559*	1.000	83	0%	88	11.4%	1	0%	-	-	-	superfamily_POZ domain,HMMPfam_BTB
ME1	4199	genome.wustl.edu	37	6	83937158	83937158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002395.4	-1	reviewed	p.L391I	1.000	218	0%	188	20.2%	1	100%	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_Malic_M,superfamily_NAD(P)-bd
HTR1E	3354	genome.wustl.edu	37	6	87726079	87726079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000865.2	+1	validated	p.L343I	0.998	149	1.3%	126	28.6%	0	-	benign(0.094)	tolerated(1)	neutral(0.007)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF292	23036	genome.wustl.edu	37	6	87971192	87971192	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.P2615	0.891	75	0%	71	19.7%	1	0%	-	-	-	NULL
RARS2	57038	genome.wustl.edu	37	6	88224733	88224733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020320.3	-1	reviewed	p.L531R	1.000	213	0%	165	33.9%	25	44%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
MDN1	23195	genome.wustl.edu	37	6	90422329	90422329	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.L2465	1.000	84	0%	72	25%	1	100%	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90500104	90500104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.S291Y	0.972	88	0%	69	27.5%	1	0%	probably_damaging(0.996)	tolerated(0.23)	deleterious(0.503)	NULL
KLHL32	114792	genome.wustl.edu	37	6	97423913	97423913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052904.3	+1	validated	p.E22K	0.994	99	1%	74	13.5%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	superfamily_POZ domain
FAXC	84553	genome.wustl.edu	37	6	99790775	99790775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032511.2	-1	validated	p.Q134P	1.000	181	0%	145	26.2%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_Thioredoxin-like,HMMPfam_Tom37
ASCC3	10973	genome.wustl.edu	37	6	101248367	101248367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006828.2	-1	validated	p.K312N	1.000	150	0%	202	21.3%	0	-	benign(0.025)	tolerated(0.41)	neutral(0.016)	NULL
ASCC3	10973	genome.wustl.edu	37	6	101296284	101296284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006828.2	-1	validated	p.E181K	1.000	94	0%	105	19%	1	0%	possibly_damaging(0.512)	tolerated(0.54)	neutral(0.179)	NULL
PRDM1	639	genome.wustl.edu	37	6	106543511	106543511	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001198.3	+1	reviewed	p.E105*	1.000	233	0%	230	17.8%	2	0%	-	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
AIM1	202	genome.wustl.edu	37	6	106960230	106960230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001624.2	+1	validated	p.S5F	0.010	21	0%	18	38.9%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SEC63	11231	genome.wustl.edu	37	6	108222714	108222714	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007214.4	-1	reviewed	p.I406S	1.000	77	0%	85	11.8%	6	0%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_Sec63,HMMSmart_SEC63
CDC40	51362	genome.wustl.edu	37	6	110531922	110531922	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015891.2	+1	reviewed	p.E215*	1.000	323	0.3%	323	23.5%	4	75%	-	-	-	NULL
METTL24	728464	genome.wustl.edu	37	6	110620291	110620291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123364.1	-1	inferred	p.R207H	1.000	126	0%	106	23.6%	18	55.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
CDK19	23097	genome.wustl.edu	37	6	110942423	110942423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015076.3	-1	reviewed	p.A421T	0.003	37	0%	28	25%	1	100%	possibly_damaging(0.753)	deleterious(0.04)	deleterious(0.625)	NULL
SLC16A10	117247	genome.wustl.edu	37	6	111540097	111540097	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018593.4	+1	validated	p.C389*	0.998	570	0.2%	462	19.5%	3	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
REV3L	5980	genome.wustl.edu	37	6	111694238	111694238	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.K1774Q	1.000	312	0%	317	23%	6	83.3%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	superfamily_Ribonuclease H-like
ROS1	6098	genome.wustl.edu	37	6	117714464	117714464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.E395D	0.958	225	0%	244	25.4%	0	-	benign(0.002)	tolerated(0.62)	neutral(0.004)	HMMSmart_LY,superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117718123	117718123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.R245I	1.000	297	0%	249	28.5%	0	-	possibly_damaging(0.66)	tolerated(0.1)	deleterious(0.519)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
DCBLD1	285761	genome.wustl.edu	37	6	117861899	117861899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173674.1	+1	provisional	p.R390S	1.000	150	0%	125	24%	10	70%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
HSF2	3298	genome.wustl.edu	37	6	122752604	122752604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004506.3	+1	validated	p.K420N	1.000	81	0%	90	36.7%	9	66.6%	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	HMMPfam_Vert_HS_TF
HSF2	3298	genome.wustl.edu	37	6	122753190	122753190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004506.3	+1	validated	p.K479T	1.000	195	0%	156	20.5%	9	11.1%	probably_damaging(0.958)	tolerated(0.15)	deleterious(0.643)	HMMPfam_Vert_HS_TF
NCOA7	135112	genome.wustl.edu	37	6	126210647	126210647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181782.3	+1	validated	p.D483Y	0.992	90	0%	53	28.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LOC728666	728666	genome.wustl.edu	37	6	126965156	126965156	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_015645.3	+1	model	NULL	1.000	177	0.6%	158	20.3%	0	-	-	-	-	-
LAMA2	3908	genome.wustl.edu	37	6	129634144	129634144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.L1105I	0.047	185	0%	143	41.3%	0	-	benign(0.008)	tolerated(0.51)	neutral(0.009)	HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,superfamily_ConA_like_lec_gl,superfamily_SSF57196
LAMA2	3908	genome.wustl.edu	37	6	129637094	129637094	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.E1308A	1.000	137	0%	139	18.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB
L3MBTL3	84456	genome.wustl.edu	37	6	130413942	130413942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032438.1	+1	validated	p.S524Y	1.000	275	0%	241	31.5%	2	0%	benign(0.339)	tolerated(0.09)	neutral(0.403)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
LOC285735	285735	genome.wustl.edu	37	6	133421232	133421232	+	RNA	SNP	G	G	A	rs140784247	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026969.1	+1	predicted	NULL	0.004	335	0%	314	28.7%	0	-	-	-	-	-
EYA4	2070	genome.wustl.edu	37	6	133827283	133827283	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004100.4	+1	reviewed	p.E411*	1.000	166	0%	203	20.7%	0	-	-	-	-	HMMPfam_Hydrolase
SGK1	6446	genome.wustl.edu	37	6	134498828	134498828	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143677.1	-1	reviewed	p.E45*	1.000	318	0.3%	323	18.9%	0	-	-	-	-	NULL
AHI1	54806	genome.wustl.edu	37	6	135751034	135751034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134830.1	-1	reviewed	p.I826M	1.000	150	0%	165	19.4%	1	0%	benign(0.252)	tolerated(0.18)	neutral(0.082)	superfamily_WD40 repeat-like
ECT2L	345930	genome.wustl.edu	37	6	139223694	139223694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077706.1	+1	validated	p.E882G	0.933	236	0.4%	233	24.9%	2	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_SSF50729
GPR126	57211	genome.wustl.edu	37	6	142723792	142723792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198569.2	+1	reviewed	p.L594V	0.398	134	0%	134	23.1%	0	-	benign(0.138)	deleterious(0.04)	neutral(0.360)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143093879	143093879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.S666Y	0.215	362	0%	323	20.4%	5	20%	benign(0.055)	deleterious(0.04)	neutral(0.352)	NULL
FBXO30	84085	genome.wustl.edu	37	6	146126124	146126124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032145.4	-1	reviewed	p.M473T	1.000	93	0%	87	24.1%	6	16.6%	benign(0.005)	tolerated(0.96)	-	NULL
SHPRH	257218	genome.wustl.edu	37	6	146242464	146242464	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042683.2	-1	validated	p.R1287*	1.000	206	0%	189	16.9%	1	0%	-	-	-	NULL
GRM1	2911	genome.wustl.edu	37	6	146708075	146708075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000838.3	+1	reviewed	p.K551T	1.000	185	0%	159	36.5%	0	-	possibly_damaging(0.95)	tolerated(0.17)	neutral(0.453)	HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2
ADGB	79747	genome.wustl.edu	37	6	147061711	147061711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024694.3	+1	provisional	p.S1002Y	0.486	324	0%	281	27.4%	0	-	benign(0.379)	deleterious(0.01)	deleterious(0.526)	NULL
RAET1L	154064	genome.wustl.edu	37	6	150343281	150343281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130900.2	-1	validated	p.L62I	0.002	287	0%	229	30.6%	2	0%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	superfamily_MHC_I/II-like_Ag-recog
PLEKHG1	57480	genome.wustl.edu	37	6	151055067	151055067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029884.1	+1	provisional	p.E84K	0.019	38	0%	35	25.7%	14	35.7%	benign(0.086)	deleterious(0.01)	neutral(0.412)	NULL
AKAP12	9590	genome.wustl.edu	37	6	151670763	151670763	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005100.3	+1	reviewed	p.E413*	0.012	85	0%	66	34.8%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152462373	152462373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.F8404C	0.998	183	0%	181	18.8%	5	20%	benign(0.257)	deleterious(0.04)	neutral(0.376)	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152501274	152501274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.K7819N	0.985	349	0%	284	20.4%	0	-	benign(0.096)	deleterious(0.02)	neutral(0.390)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152546970	152546970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.E7079D	1.000	419	0%	428	32%	0	-	benign(0.307)	tolerated(0.54)	neutral(0.103)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FBXO5	26271	genome.wustl.edu	37	6	153296353	153296353	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012177.3	-1	reviewed	p.F169	0.006	286	0%	283	17.7%	5	0%	-	-	-	NULL
SCAF8	22828	genome.wustl.edu	37	6	155154410	155154410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014892.3	+1	validated	p.D1233Y	1.000	141	0%	112	16.1%	10	30%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
TIAM2	26230	genome.wustl.edu	37	6	155485575	155485575	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012454.3	+1	reviewed	p.E685	0.998	64	0%	43	30.2%	1	0%	-	-	-	NULL
TIAM2	26230	genome.wustl.edu	37	6	155574087	155574087	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012454.3	+1	reviewed	p.S1375	0.001	195	0%	156	23.1%	0	-	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
TFB1M	51106	genome.wustl.edu	37	6	155632387	155632387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016020.2	-1	validated	p.L74I	1.000	220	0%	164	20.1%	8	0%	probably_damaging(0.966)	tolerated(0.19)	neutral(0.457)	HMMPfam_RrnaAD,PatternScan_RRNA_A_DIMETH,HMMSmart_rADc,superfamily_SSF53335
SNX9	51429	genome.wustl.edu	37	6	158296104	158296104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016224.3	+1	reviewed	p.D66Y	0.999	371	0%	285	30.9%	12	25%	possibly_damaging(0.507)	deleterious(0.05)	deleterious(0.515)	NULL
ACAT2	39	genome.wustl.edu	37	6	160197209	160197209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005891.2	+1	reviewed	p.F221C	1.000	176	0%	157	29.9%	24	50%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
MAS1	4142	genome.wustl.edu	37	6	160328626	160328626	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002377.2	+1	reviewed	p.K213	1.000	165	0%	130	13.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MLLT4	4301	genome.wustl.edu	37	6	168271065	168271065	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400825	+1	known	p.E102*	1.000	165	0%	134	26.1%	1	0%	-	-	-	HMMPfam_RA,HMMSmart_SM00314
THBS2	7058	genome.wustl.edu	37	6	169620332	169620332	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003247.2	-1	reviewed	p.E1158*	1.000	146	0%	93	23.7%	3	0%	-	-	-	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl
THBS2	7058	genome.wustl.edu	37	6	169621618	169621618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003247.2	-1	reviewed	p.R1093Q	1.000	97	0%	78	21.8%	11	9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl
DLL1	28514	genome.wustl.edu	37	6	170597466	170597466	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005618.3	-1	reviewed	p.F177	0.957	41	0%	28	46.4%	5	20%	-	-	-	HMMPfam_DSL,HMMSmart_SM00051
INTS1	26173	genome.wustl.edu	37	7	1524964	1524964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080453.2	-1	validated	p.D1040N	1.000	34	0%	31	19.4%	130	7.6%	benign(0.01)	tolerated(0.47)	neutral(0.011)	NULL
INTS1	26173	genome.wustl.edu	37	7	1542569	1542569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080453.2	-1	validated	p.S106L	0.986	138	0%	124	17.7%	27	18.5%	probably_damaging(0.969)	tolerated(0.17)	deleterious(0.470)	NULL
IQCE	23288	genome.wustl.edu	37	7	2649781	2649781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152558.3	+1	validated	p.K691N	0.000	52	0%	26	15.4%	49	6.1%	possibly_damaging(0.819)	-	-	NULL
CARD11	84433	genome.wustl.edu	37	7	2959068	2959068	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032415.3	-1	validated	p.C816	0.994	43	0%	43	14%	25	0%	-	-	-	NULL
EIF2AK1	27102	genome.wustl.edu	37	7	6066420	6066420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014413.3	-1	reviewed	p.S568*	0.093	149	0%	171	28.7%	43	4.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF12	7559	genome.wustl.edu	37	7	6730965	6730965	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016265.3	-1	reviewed	p.L536	0.000	105	0%	97	30.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF12	7559	genome.wustl.edu	37	7	6731238	6731238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016265.3	-1	reviewed	p.F445L	0.068	172	0%	180	25.6%	3	0%	benign(0.003)	tolerated(0.1)	neutral(0.286)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000248675	0	genome.wustl.edu	37	7	10491794	10491794	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510654	-1	known	NULL	0.988	71	0%	48	27.1%	0	-	-	-	-	-
THSD7A	221981	genome.wustl.edu	37	7	11446979	11446979	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.S1290	0.972	121	0%	112	15.2%	1	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
VWDE	221806	genome.wustl.edu	37	7	12420147	12420147	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135924.1	-1	provisional	p.E252*	1.000	81	0%	77	29.9%	0	-	-	-	-	NULL
DGKB	1607	genome.wustl.edu	37	7	14378214	14378214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004080.2	-1	reviewed	p.R684Q	0.991	362	0%	291	19.9%	0	-	benign(0.122)	tolerated(0.61)	neutral(0.014)	HMMPfam_DAGK_acc,HMMSmart_SM00045
AGMO	392636	genome.wustl.edu	37	7	15405188	15405188	+	Missense_Mutation	SNP	C	C	T	rs181773805	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004320.1	-1	provisional	p.R405Q	0.002	173	0%	160	21.2%	0	-	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	NULL
ANKMY2	57037	genome.wustl.edu	37	7	16649278	16649278	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020319.2	-1	validated	p.R287*	1.000	196	0%	206	25.7%	4	0%	-	-	-	NULL
AHR	196	genome.wustl.edu	37	7	17379527	17379527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001621.4	+1	validated	p.S693Y	0.001	163	0%	131	12.2%	18	55.5%	benign(0.047)	deleterious(0.01)	neutral(0.409)	NULL
SNX13	23161	genome.wustl.edu	37	7	17843046	17843046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015132.4	-1	reviewed	p.F741C	1.000	246	0%	215	35.3%	10	90%	possibly_damaging(0.874)	tolerated(0.18)	neutral(0.396)	NULL
ABCB5	340273	genome.wustl.edu	37	7	20685505	20685505	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000404938	+1	known	e7+2	1.000	125	0%	132	22.7%	0	-	-	-	-	-
DNAH11	8701	genome.wustl.edu	37	7	21603904	21603904	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.I361	0.085	266	0%	245	18%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH11	8701	genome.wustl.edu	37	7	21641066	21641066	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.E1160*	0.814	137	0%	141	18.4%	0	-	-	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21654888	21654888	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.R1337*	0.603	374	0%	332	17.8%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH11	8701	genome.wustl.edu	37	7	21723441	21723441	+	Missense_Mutation	SNP	C	C	T	rs180897552	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.R1841C	1.000	385	0%	318	31.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21894064	21894064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.F3738L	1.000	189	0%	211	10.9%	1	0%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21907547	21907547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.E3928K	0.990	163	0.6%	186	32.3%	1	100%	benign(0.002)	tolerated(0.3)	neutral(0.029)	HMMPfam_Dynein_heavy
CDCA7L	55536	genome.wustl.edu	37	7	21945150	21945150	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018719.4	-1	validated	p.R341*	0.970	125	0%	117	24.8%	16	0%	-	-	-	NULL
FAM126A	84668	genome.wustl.edu	37	7	22985597	22985597	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032581.3	-1	reviewed	p.E393*	1.000	119	0%	124	29.8%	0	-	-	-	-	NULL
NUPL2	11097	genome.wustl.edu	37	7	23239982	23239982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007342.2	+1	validated	p.S297L	0.922	194	0.5%	174	29.9%	5	80%	probably_damaging(0.957)	tolerated(0.12)	deleterious(0.661)	NULL
STK31	56164	genome.wustl.edu	37	7	23811782	23811782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.I617T	0.530	101	0%	110	21.8%	0	-	benign(0)	tolerated(1)	-	NULL
CBX3	11335	genome.wustl.edu	37	7	26245991	26245991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007276.3	+1	reviewed	p.K10Q	1.000	184	0%	195	17.9%	15	46.6%	benign(0.132)	tolerated(0.07)	neutral(0.330)	NULL
HOXA1	3198	genome.wustl.edu	37	7	27134375	27134375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005522.4	-1	reviewed	p.A231V	1.000	84	0%	83	28.9%	0	-	benign(0.038)	tolerated(0.1)	neutral(0.288)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ENSG00000248357	0	genome.wustl.edu	37	7	27498300	27498300	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506075	+1	novel	NULL	1.000	191	0%	169	23.1%	6	0%	-	-	-	-
CREB5	9586	genome.wustl.edu	37	7	28857778	28857778	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182898.2	+1	reviewed	p.E449*	1.000	179	0%	169	28.4%	8	50%	-	-	-	NULL
WIPF3	644150	genome.wustl.edu	37	7	29943971	29943971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000242140	+1	known	p.N474T	0.997	161	0%	174	21.8%	2	50%	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	NULL
BMPER	168667	genome.wustl.edu	37	7	33976927	33976927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133468.3	+1	validated	p.E82D	1.000	119	0%	90	22.2%	0	-	possibly_damaging(0.45)	deleterious(0)	deleterious(0.592)	HMMSmart_VWC,PatternScan_VWFC_1
TXNDC3	51314	genome.wustl.edu	37	7	37907312	37907312	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016616.4	+1	reviewed	p.F210	0.998	218	0%	213	29.1%	1	100%	-	-	-	superfamily_NDK
TXNDC3	51314	genome.wustl.edu	37	7	37924818	37924818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016616.4	+1	reviewed	p.R404I	0.002	256	0%	274	25.2%	0	-	benign(0.233)	deleterious(0.05)	neutral(0.369)	HMMSmart_NDK,superfamily_NDK
TRGC2	6967	genome.wustl.edu	37	7	38289070	38289070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436911	-1	known	p.R35I	0.965	397	0%	362	30.7%	0	-	benign(0.095)	deleterious(0.01)	neutral(0.413)	HMMSmart_SM00407,superfamily_Immunoglobulin
AMPH	273	genome.wustl.edu	37	7	38505847	38505847	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001635.2	-1	reviewed	p.R198*	1.000	136	0%	136	18.4%	0	-	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
CDK13	8621	genome.wustl.edu	37	7	40117616	40117616	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003718.4	+1	reviewed	p.G931	0.999	436	0%	341	19.6%	8	12.5%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C7orf44	55744	genome.wustl.edu	37	7	43687217	43687217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018224.2	-1	validated	p.R11Q	0.162	58	0%	69	27.5%	33	63.6%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
POLM	27434	genome.wustl.edu	37	7	44118368	44118368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013284.2	-1	validated	p.R229W	0.001	147	0%	114	22.8%	9	22.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_POLXc,superfamily_DNApol_B_N_like
CAMK2B	816	genome.wustl.edu	37	7	44260222	44260222	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001220.4	-1	reviewed	p.F587	0.996	36	0%	46	10.9%	4	0%	-	-	-	HMMPfam_CaMKII_AD,superfamily_SSF54427
NACAD	23148	genome.wustl.edu	37	7	45120514	45120514	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000490531	-1	known	p.G1500D	0.007	59	0%	30	40%	4	50%	-	-	-	NULL
ADCY1	107	genome.wustl.edu	37	7	45697445	45697445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021116.2	+1	reviewed	p.V423A	1.000	68	0%	45	15.6%	17	11.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1
ABCA13	154664	genome.wustl.edu	37	7	48311763	48311763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.L834V	0.056	35	0%	51	25.5%	0	-	possibly_damaging(0.896)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48559828	48559828	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453246	+1	known	p.A929T	0.000	185	0%	152	21.1%	1	0%	-	-	-	NULL
ZPBP	11055	genome.wustl.edu	37	7	50070739	50070739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007009.2	-1	validated	p.V219I	0.998	100	0%	115	34.8%	0	-	possibly_damaging(0.937)	tolerated(0.06)	deleterious(0.706)	HMMPfam_Sp38
IKZF1	10320	genome.wustl.edu	37	7	50459558	50459558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331340	+1	known	p.L283I	1.000	106	0%	91	23.1%	5	0%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
FIGNL1	63979	genome.wustl.edu	37	7	50513485	50513485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042762.1	-1	validated	p.E501K	1.000	84	0%	71	29.6%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF479	90827	genome.wustl.edu	37	7	57188088	57188088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033273.1	-1	provisional	p.R345I	0.986	58	0%	64	12.5%	0	-	benign(0.018)	tolerated(0.28)	neutral(0.032)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57188349	57188349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033273.1	-1	provisional	p.R258I	0.035	134	0%	122	19.7%	0	-	benign(0.009)	tolerated(0.15)	neutral(0.241)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF716	441234	genome.wustl.edu	37	7	57529030	57529030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420713	+1	known	p.R288I	0.502	100	0%	90	30%	0	-	benign(0.018)	tolerated(0.27)	neutral(0.034)	superfamily_C2H2 and C2HC zinc fingers
ZNF716	441234	genome.wustl.edu	37	7	57529114	57529114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420713	+1	known	p.R316I	0.995	105	0%	87	18.4%	0	-	possibly_damaging(0.662)	tolerated(0.31)	neutral(0.261)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF679	168417	genome.wustl.edu	37	7	63726400	63726400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153363.2	+1	validated	p.S130I	0.001	379	0%	321	33.3%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
ZNF679	168417	genome.wustl.edu	37	7	63726401	63726401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153363.2	+1	validated	p.S130R	0.000	376	0%	318	33.6%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
ZNF680	340252	genome.wustl.edu	37	7	63982692	63982692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178558.4	-1	validated	p.R147I	0.001	182	0%	222	15.8%	1	0%	benign(0.002)	tolerated(0.57)	neutral(0.006)	NULL
ZNF107	51427	genome.wustl.edu	37	7	64167137	64167137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013746.1	+1	validated	p.R152I	0.210	35	0%	40	47.5%	0	-	benign(0.207)	tolerated(0.14)	neutral(0.270)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF138	7697	genome.wustl.edu	37	7	64292353	64292353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006524.2	+1	validated	p.R188C	0.975	63	0%	78	11.5%	2	0%	benign(0)	deleterious(0.02)	neutral(0.383)	superfamily_SSF57667
ZNF117	51351	genome.wustl.edu	37	7	64439395	64439395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015852.3	-1	validated	p.R185I	0.908	79	0%	76	11.8%	1	0%	benign(0.01)	tolerated(0.2)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64439479	64439479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015852.3	-1	validated	p.R157I	0.857	117	0%	122	36.1%	0	-	benign(0.26)	tolerated(0.07)	neutral(0.346)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000245043	0	genome.wustl.edu	37	7	64534163	64534163	+	RNA	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501153	-1	known	NULL	1.000	25	0%	19	47.4%	15	0%	-	-	-	-
ZNF92	168374	genome.wustl.edu	37	7	64863946	64863946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152626.2	+1	validated	p.H307N	1.000	55	0%	65	21.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WBSCR16	81554	genome.wustl.edu	37	7	74470140	74470140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030798.3	-1	reviewed	p.K367Q	1.000	117	0%	116	19%	25	32%	possibly_damaging(0.94)	tolerated(0.35)	neutral(0.406)	superfamily_RCC1/BLIP-II
CCDC146	57639	genome.wustl.edu	37	7	76891535	76891535	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020879.2	+1	validated	p.R362*	0.991	121	0%	109	16.5%	2	0%	-	-	-	NULL
CCDC146	57639	genome.wustl.edu	37	7	76908289	76908289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020879.2	+1	validated	p.R522Q	0.919	141	0.7%	122	27.9%	0	-	possibly_damaging(0.645)	deleterious(0.02)	deleterious(0.609)	NULL
SEMA3C	10512	genome.wustl.edu	37	7	80394557	80394557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006379.2	-1	validated	p.R453W	1.000	122	0%	95	25.3%	17	29.4%	possibly_damaging(0.94)	deleterious(0.02)	deleterious(0.768)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CACNA2D1	781	genome.wustl.edu	37	7	81624206	81624206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.T571N	1.000	236	0%	254	18.1%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_VGCC_alpha2
CACNA2D1	781	genome.wustl.edu	37	7	81624252	81624252	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.R556*	1.000	273	0%	264	13.3%	0	-	-	-	-	HMMPfam_VGCC_alpha2
PCLO	27445	genome.wustl.edu	37	7	82584816	82584816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.R1818I	1.000	448	0%	433	19.6%	0	-	probably_damaging(0.995)	-	-	NULL
SEMA3A	10371	genome.wustl.edu	37	7	83634804	83634804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006080.2	-1	reviewed	p.R404I	1.000	318	0%	284	19%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
ABCB1	5243	genome.wustl.edu	37	7	87173568	87173568	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.S696	0.985	218	0%	205	28.8%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SRI	6717	genome.wustl.edu	37	7	87838684	87838684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003130.2	-1	validated	p.A161T	0.996	244	0%	198	20.7%	317	35.6%	benign(0.038)	tolerated(0.69)	neutral(0.004)	superfamily_EF-hand
AKAP9	10142	genome.wustl.edu	37	7	91632523	91632523	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.E1098*	1.000	85	0%	109	15.6%	0	-	-	-	-	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91794287	91794287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430130	-1	known	p.R77I	0.000	242	0%	246	19.5%	0	-	possibly_damaging(0.888)	deleterious(0.04)	deleterious(0.696)	NULL
ERVW-1	30816	genome.wustl.edu	37	7	92098764	92098764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014590.3	-1	reviewed	p.S311Y	0.107	451	0%	377	24.7%	0	-	possibly_damaging(0.517)	tolerated(1)	neutral(0.174)	HMMPfam_TLV_coat
SAMD9	54809	genome.wustl.edu	37	7	92733543	92733543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.S623Y	0.998	212	0%	185	34.1%	1	100%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92762802	92762802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.R828Q	0.001	131	0%	96	30.2%	0	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92764297	92764297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.D330Y	0.000	143	0%	139	35.3%	2	50%	benign(0.156)	tolerated(0.06)	neutral(0.337)	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94539683	94539683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017650.2	+1	validated	p.K86N	0.988	106	0%	91	26.4%	0	-	unknown(0)	tolerated(0.29)	-	NULL
PON1	5444	genome.wustl.edu	37	7	94940808	94940808	+	Missense_Mutation	SNP	T	T	G	rs112078575		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000446.5	-1	reviewed	p.K151T	0.999	405	0%	423	19.4%	0	-	benign(0.091)	tolerated(0.51)	neutral(0.015)	superfamily_Calcium-dependent phosphotriesterase
PON3	5446	genome.wustl.edu	37	7	95001491	95001491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000940.2	-1	reviewed	p.D121N	0.987	280	0%	250	30.8%	0	-	probably_damaging(0.969)	tolerated(0.12)	deleterious(0.672)	superfamily_Calcium-dependent phosphotriesterase
DYNC1I1	1780	genome.wustl.edu	37	7	95726852	95726852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004411.4	+1	validated	p.R629C	0.998	206	0%	162	20.4%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
KPNA7	402569	genome.wustl.edu	37	7	98775681	98775681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145715.1	-1	validated	p.E442D	0.995	181	0%	161	35.4%	1	100%	benign(0)	tolerated(0.28)	neutral(0.032)	superfamily_ARM-type_fold
KPNA7	402569	genome.wustl.edu	37	7	98779667	98779667	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145715.1	-1	validated	p.E386*	1.000	68	0%	64	26.6%	0	-	-	-	-	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
ZAN	7455	genome.wustl.edu	37	7	100366313	100366313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.A1708T	0.006	58	0%	45	37.8%	0	-	possibly_damaging(0.911)	deleterious(0.03)	deleterious(0.728)	NULL
MUC12	10071	genome.wustl.edu	37	7	100634707	100634707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.S431L	0.006	353	0%	270	18.9%	0	-	benign(0.29)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100685796	100685796	+	Missense_Mutation	SNP	C	C	T	rs144234547		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.P3700L	0.000	171	0%	121	17.4%	0	-	possibly_damaging(0.544)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100695125	100695125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.V4329I	0.003	89	0%	78	29.5%	0	-	unknown(0)	-	-	NULL
PSMC2	5701	genome.wustl.edu	37	7	103004748	103004748	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002803.2	+1	reviewed	p.V250	0.970	140	0%	129	16.3%	49	4%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
RELN	5649	genome.wustl.edu	37	7	103163950	103163950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.Q2460K	1.000	122	0%	121	20.7%	5	20%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
RELN	5649	genome.wustl.edu	37	7	103175899	103175899	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.L2405	0.371	118	0%	121	28.1%	3	33.3%	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103417060	103417060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.H163R	1.000	233	0%	201	15.9%	0	-	benign(0.037)	tolerated(0.33)	neutral(0.026)	HMMPfam_Reeler
MLL5	55904	genome.wustl.edu	37	7	104752971	104752971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018682.3	+1	reviewed	p.L1590V	1.000	261	0%	192	28.6%	72	37.5%	benign(0.388)	deleterious(0)	deleterious(0.569)	NULL
ATXN7L1	222255	genome.wustl.edu	37	7	105260694	105260694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418537	-1	known	p.S302L	0.954	233	0%	214	24.8%	9	55.5%	-	-	-	NULL
PRKAR2B	5577	genome.wustl.edu	37	7	106797673	106797673	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002736.2	+1	reviewed	p.R343*	0.887	224	0%	173	30.1%	1	0%	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
HBP1	26959	genome.wustl.edu	37	7	106822967	106822967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012257.3	+1	validated	p.E107*	1.000	78	0%	57	26.3%	52	1.9%	-	-	-	NULL
LRRN3	54674	genome.wustl.edu	37	7	110763655	110763655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099658.1	+1	validated	p.R276Q	1.000	28	0%	40	22.5%	0	-	benign(0.009)	tolerated(0.73)	neutral(0.002)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
ZNF277	11179	genome.wustl.edu	37	7	111970282	111970282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450657	+1	known	p.S271Y	0.000	159	0%	146	32.9%	0	-	unknown(0)	-	-	NULL
IFRD1	3475	genome.wustl.edu	37	7	112101963	112101963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007245.1	+1	validated	p.D204Y	1.000	168	0%	199	12.6%	15	13.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IFRD,superfamily_ARM repeat
IFRD1	3475	genome.wustl.edu	37	7	112112911	112112911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007245.1	+1	validated	p.E421K	1.000	264	0.4%	213	22.1%	11	18.1%	benign(0.01)	deleterious(0)	neutral(0.445)	HMMPfam_IFRD_C
FOXP2	93986	genome.wustl.edu	37	7	114303569	114303569	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148898.2	+1	reviewed	p.L637	1.000	190	0%	257	18.3%	0	-	-	-	-	HMMPfam_Fork_head
MET	4233	genome.wustl.edu	37	7	116340162	116340162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127500.1	+1	reviewed	p.L342I	1.000	69	0%	68	17.6%	5	60%	benign(0.084)	deleterious(0.01)	neutral(0.412)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CTTNBP2	83992	genome.wustl.edu	37	7	117431580	117431580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033427.2	-1	reviewed	p.S557Y	1.000	278	0%	245	19.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CortBP2
WNT16	51384	genome.wustl.edu	37	7	120971999	120971999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057168.1	+1	reviewed	p.N205S	1.000	61	0%	51	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_SM00097
SLC13A1	6561	genome.wustl.edu	37	7	122757604	122757604	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022444.3	-1	validated	p.S524*	1.000	249	0%	226	27.4%	0	-	-	-	-	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE
NDUFA5	4698	genome.wustl.edu	37	7	123197308	123197308	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000340034	-1	known	p.P72	0.000	41	0%	41	12.2%	0	-	-	-	-	NULL
ASB15	142685	genome.wustl.edu	37	7	123257785	123257785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080928.3	+1	validated	p.L149M	1.000	86	0%	99	30.3%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
HYAL4	23553	genome.wustl.edu	37	7	123508855	123508855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012269.2	+1	reviewed	p.K176N	0.010	74	0%	81	19.8%	0	-	benign(0.002)	tolerated(0.3)	neutral(0.029)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
GCC1	79571	genome.wustl.edu	37	7	127222310	127222310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024523.5	-1	reviewed	p.R696C	0.044	216	0%	155	21.3%	52	40.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CPA1	1357	genome.wustl.edu	37	7	130023271	130023271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001868.2	+1	reviewed	p.D175N	1.000	94	0%	79	25.3%	0	-	possibly_damaging(0.947)	tolerated(0.06)	deleterious(0.713)	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,PatternScan_CARBOXYPEPT_ZN_1,superfamily_SSF53187
PLXNA4	91584	genome.wustl.edu	37	7	131844295	131844295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.L1533M	1.000	254	0%	183	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA4	91584	genome.wustl.edu	37	7	132193081	132193081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.E124D	1.000	47	2.1%	27	18.5%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
CHCHD3	54927	genome.wustl.edu	37	7	132481210	132481210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017812.2	-1	provisional	p.A218V	1.000	221	0%	156	26.3%	30	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHCHD3	54927	genome.wustl.edu	37	7	132709325	132709325	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017812.2	-1	provisional	p.E78*	1.000	215	0%	231	14.7%	7	14.2%	-	-	-	HMMPfam_DUF737
AGBL3	340351	genome.wustl.edu	37	7	134678411	134678411	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178563.3	+1	provisional	p.E98*	1.000	241	0%	197	37.1%	1	0%	-	-	-	NULL
AKR1D1	6718	genome.wustl.edu	37	7	137791397	137791397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005989.2	+1	validated	p.F208C	1.000	200	0%	172	32%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
SVOPL	136306	genome.wustl.edu	37	7	138341226	138341226	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139456.1	-1	validated	p.T167	0.917	168	0%	161	41.6%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ZC3HAV1	56829	genome.wustl.edu	37	7	138774488	138774488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020119.3	-1	reviewed	p.S109Y	1.000	219	0%	219	11.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PARP12	64761	genome.wustl.edu	37	7	139724636	139724636	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022750.2	-1	provisional	p.S610	0.000	40	0%	32	28.1%	239	44.3%	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
JHDM1D	80853	genome.wustl.edu	37	7	139801846	139801846	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030647.1	-1	validated	p.R515*	1.000	246	0%	191	35.1%	4	0%	-	-	-	NULL
BRAF	673	genome.wustl.edu	37	7	140500260	140500260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004333.4	-1	reviewed	p.F294L	1.000	114	0%	90	12.2%	3	100%	benign(0.205)	tolerated(0.68)	neutral(0.022)	NULL
BRAF	673	genome.wustl.edu	37	7	140501260	140501260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004333.4	-1	reviewed	p.R271H	1.000	136	0%	132	36.4%	2	50%	benign(0.073)	tolerated(0.52)	neutral(0.014)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
AGK	55750	genome.wustl.edu	37	7	141315346	141315346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018238.3	+1	validated	p.E167K	0.518	341	0%	321	21.2%	13	7.6%	benign(0.122)	tolerated(0.55)	neutral(0.017)	HMMPfam_DAGK_cat,HMMSmart_SM00046
MGAM	8972	genome.wustl.edu	37	7	141719073	141719073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.K134N	0.988	124	0%	97	28.9%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
TRBV4-1	28617	genome.wustl.edu	37	7	142013362	142013362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390357	+1	known	p.L73I	0.000	172	0%	145	22.8%	0	-	benign(0.224)	tolerated(0.29)	neutral(0.051)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV6-1	28606	genome.wustl.edu	37	7	142028546	142028546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390353	+1	known	p.S94P	0.000	157	0%	125	24.8%	3	0%	benign(0)	tolerated(1)	-	HMMPfam_V-set,superfamily_SSF48726
TRBV6-5	28602	genome.wustl.edu	37	7	142180920	142180920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390368	-1	known	p.L11V	0.000	152	0.7%	114	16.7%	5	0%	benign(0.069)	tolerated(0.08)	neutral(0.304)	NULL
TRBC2	28638	genome.wustl.edu	37	7	142499083	142499083	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000466254	+1	known	p.S120L	0.002	49	0%	34	29.4%	135	0%	-	-	-	superfamily_Immunoglobulin
KEL	3792	genome.wustl.edu	37	7	142643301	142643301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000420.2	-1	reviewed	p.R436Q	0.063	53	0%	33	18.2%	0	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
TAS2R39	259285	genome.wustl.edu	37	7	142881347	142881347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176881.2	+1	provisional	p.F279C	0.004	256	0%	190	17.4%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_TAS2R,superfamily_SSF81321
CLCN1	1180	genome.wustl.edu	37	7	143039081	143039081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000083.2	+1	reviewed	p.E548K	1.000	185	0%	147	21.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
OR2F1	26211	genome.wustl.edu	37	7	143657885	143657885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012369.2	+1	provisional	p.F274L	0.000	298	0%	212	20.8%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CNTNAP2	26047	genome.wustl.edu	37	7	146997332	146997332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.R483Q	0.998	205	0%	168	22.6%	0	-	probably_damaging(1)	tolerated(0.63)	deleterious(0.503)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CUL1	8454	genome.wustl.edu	37	7	148495742	148495742	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003592.2	+1	validated	p.I703	0.806	381	0.3%	302	33.4%	22	36.3%	-	-	-	"HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"
ZNF282	8427	genome.wustl.edu	37	7	148903869	148903869	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003575.2	+1	validated	p.Y223D	1.000	228	0%	175	26.3%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SSPO	23145	genome.wustl.edu	37	7	149515780	149515780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.R3894I	0.000	19	0%	19	36.8%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SSPO	23145	genome.wustl.edu	37	7	149519212	149519212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.A4339V	0.003	27	0%	27	44.4%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SMARCD3	6604	genome.wustl.edu	37	7	150939683	150939683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003801.1	-1	reviewed	p.R155W	1.000	70	0%	58	15.5%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKAG2	51422	genome.wustl.edu	37	7	151483560	151483560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016203.3	-1	reviewed	p.R61Q	0.915	63	0%	37	40.5%	0	-	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
GALNTL5	168391	genome.wustl.edu	37	7	151680204	151680204	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145292.3	+1	validated	p.E168*	0.993	155	0%	124	20.2%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151859763	151859763	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360104	-1	known	p.D1139N	0.000	225	0%	204	10.3%	3	0%	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151902253	151902253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.R1300K	1.000	381	0%	362	20.4%	1	0%	probably_damaging(0.996)	-	-	NULL
DPP6	1804	genome.wustl.edu	37	7	154561155	154561155	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377770	+1	known	p.H304	1.000	102	0%	89	37.1%	1	0%	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
HTR5A	3361	genome.wustl.edu	37	7	154875950	154875950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024012.2	+1	reviewed	p.R276Q	1.000	153	0%	122	32%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RBM33	155435	genome.wustl.edu	37	7	155499605	155499605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053043.2	+1	validated	p.R264Q	0.998	57	0%	55	14.5%	11	36.3%	unknown(0)	deleterious(0)	-	NULL
UBE3C	9690	genome.wustl.edu	37	7	157046990	157046990	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014671.2	+1	validated	p.F979C	1.000	247	0%	193	23.8%	6	33.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MIR595	693180	genome.wustl.edu	37	7	158325416	158325416	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384905	-1	known	NULL	0.000	119	0%	101	14.9%	0	-	-	-	-	-
CSMD1	64478	genome.wustl.edu	37	8	2855536	2855536	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.R2793*	0.521	54	0%	31	35.5%	0	-	-	-	-	superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	3015436	3015436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.P1967L	1.000	117	0%	86	26.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	3076825	3076825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.R1543W	1.000	133	0%	98	25.5%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3256976	3256976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.S782Y	0.998	233	0.4%	239	31%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3351157	3351157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.S480L	0.993	165	0.6%	127	27.6%	0	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PSD3	23362	genome.wustl.edu	37	8	18490285	18490285	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015310.3	-1	validated	p.E750*	0.999	390	0%	351	20.2%	0	-	-	-	-	NULL
LZTS1	11178	genome.wustl.edu	37	8	20112506	20112506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021020.2	-1	reviewed	p.E63K	1.000	110	0%	93	23.7%	0	-	probably_damaging(0.996)	tolerated(0.34)	deleterious(0.485)	NULL
NEFL	4747	genome.wustl.edu	37	8	24813273	24813273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000221169	-1	known	p.D253N	1.000	85	0%	56	37.5%	0	-	-	-	-	HMMPfam_Filament
DOCK5	80005	genome.wustl.edu	37	8	25156478	25156478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024940.6	+1	validated	p.D209N	1.000	217	0%	152	25%	6	50%	benign(0.067)	tolerated(0.34)	neutral(0.028)	NULL
INTS9	55756	genome.wustl.edu	37	8	28669960	28669960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018250.3	-1	reviewed	p.Q210K	1.000	88	0%	85	45.9%	9	55.5%	benign(0.001)	tolerated(1)	-	NULL
HMBOX1	79618	genome.wustl.edu	37	8	28837637	28837637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135726.1	+1	validated	p.R184W	1.000	420	0%	328	24.7%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_lambda repressor-like DNA-binding domains
TEX15	56154	genome.wustl.edu	37	8	30700931	30700931	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.F1868C	1.000	146	0%	155	17.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TEX15	56154	genome.wustl.edu	37	8	30703790	30703790	+	Missense_Mutation	SNP	C	C	A	rs183773900	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.R915I	0.920	163	0%	185	11.9%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
UNC5D	137970	genome.wustl.edu	37	8	35588575	35588575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080872.2	+1	validated	p.S576Y	0.999	235	0%	222	26.1%	0	-	probably_damaging(0.989)	tolerated(1)	neutral(0.440)	HMMPfam_ZU5,HMMSmart_SM00218
TACC1	6867	genome.wustl.edu	37	8	38677206	38677206	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006283.2	+1	reviewed	p.I148	0.001	105	0%	83	20.5%	0	-	-	-	-	NULL
ADAM18	8749	genome.wustl.edu	37	8	39486896	39486896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014237.1	+1	reviewed	p.K176Q	0.000	137	0%	165	17%	0	-	-	-	-	NULL
IDO1	3620	genome.wustl.edu	37	8	39782262	39782262	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002164.4	+1	validated	p.F226	0.998	448	0%	428	29.9%	81	45.6%	-	-	-	HMMPfam_IDO
GINS4	84296	genome.wustl.edu	37	8	41399360	41399360	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032336.2	+1	validated	p.L173	1.000	307	0%	278	22.3%	9	44.4%	-	-	-	HMMPfam_Sld5
ANK1	286	genome.wustl.edu	37	8	41557959	41557959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142446.1	-1	reviewed	p.I858M	0.999	323	0%	258	12.8%	0	-	benign(0.123)	tolerated(0.61)	neutral(0.014)	superfamily_ANK
CHRNB3	1142	genome.wustl.edu	37	8	42585836	42585836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000749.3	+1	validated	p.L117I	1.000	175	0%	197	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CHRNB3	1142	genome.wustl.edu	37	8	42587226	42587226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000749.3	+1	validated	p.S259L	1.000	179	0%	160	18.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
HGSNAT	138050	genome.wustl.edu	37	8	43013752	43013752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152419.2	+1	reviewed	p.S90N	0.017	216	0%	178	28.1%	8	50%	possibly_damaging(0.889)	tolerated(0.08)	deleterious(0.649)	NULL
LOC100287980	100287980	genome.wustl.edu	37	8	48001307	48001307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342844.1	-1	model	p.K204N	0.237	43	0%	47	27.7%	0	-	-	-	-	NULL
PXDNL	137902	genome.wustl.edu	37	8	52252308	52252308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.Q1341L	0.000	267	0%	288	24.3%	0	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53558288	53558288	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014781.4	-1	reviewed	p.R1321*	0.991	112	0%	138	23.2%	2	0%	-	-	-	NULL
ATP6V1H	51606	genome.wustl.edu	37	8	54727287	54727287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015941.2	-1	reviewed	p.E154*	1.000	161	0.6%	227	20.3%	28	3.5%	-	-	-	HMMPfam_V-ATPase_H,superfamily_ARM repeat
TCEA1	6917	genome.wustl.edu	37	8	54896935	54896935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006756.2	-1	validated	p.R222S	1.000	333	0%	339	29.2%	15	26.6%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
RP1	6101	genome.wustl.edu	37	8	55538707	55538707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.K755N	0.907	17	0%	30	20%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
UBXN2B	137886	genome.wustl.edu	37	8	59343194	59343194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077619.1	+1	validated	p.E102G	1.000	140	0%	118	28%	6	50%	possibly_damaging(0.786)	tolerated(0.12)	deleterious(0.555)	NULL
CHD7	55636	genome.wustl.edu	37	8	61750316	61750316	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.F1425	0.981	169	0%	152	36.8%	3	33.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ARFGEF1	10565	genome.wustl.edu	37	8	68170430	68170430	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006421.3	-1	reviewed	p.F777	1.000	183	0.5%	165	29.7%	2	50%	-	-	-	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,superfamily_ARM-type_fold
CPA6	57094	genome.wustl.edu	37	8	68334862	68334862	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020361.4	-1	validated	p.F397	1.000	249	0%	248	14.9%	0	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
EYA1	2138	genome.wustl.edu	37	8	72123486	72123486	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000503.4	-1	reviewed	p.E535*	1.000	424	0%	347	21.3%	1	0%	-	-	-	HMMPfam_Hydrolase
TRPA1	8989	genome.wustl.edu	37	8	72946550	72946550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007332.2	-1	reviewed	p.S873Y	0.710	135	0%	144	23.6%	0	-	possibly_damaging(0.574)	deleterious(0.02)	deleterious(0.580)	HMMPfam_Ion_trans
LOC392232	392232	genome.wustl.edu	37	8	73140363	73140363	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_037363.2	-1	model	NULL	1.000	66	0%	54	20.4%	0	-	-	-	-	-
KCNB2	9312	genome.wustl.edu	37	8	73849914	73849914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004770.2	+1	reviewed	p.A775V	0.001	51	0%	49	20.4%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
GDAP1	54332	genome.wustl.edu	37	8	75276516	75276516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018972.2	+1	reviewed	p.G331R	1.000	271	0%	200	15%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77617403	77617403	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.F360	1.000	240	0%	242	21.9%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77767954	77767954	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.R2888*	0.478	93	0%	96	18.8%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PMP2	5375	genome.wustl.edu	37	8	82357163	82357163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002677.3	-1	validated	p.K45N	1.000	505	0.2%	464	18.3%	0	-	benign(0.12)	tolerated(0.46)	neutral(0.021)	HMMPfam_Lipocalin,superfamily_Lipocalins
CA1	759	genome.wustl.edu	37	8	86250541	86250541	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128829.2	-1	reviewed	p.E59*	0.938	573	0%	508	19.5%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
CNGB3	54714	genome.wustl.edu	37	8	87591039	87591039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019098.4	-1	reviewed	p.D661Y	0.998	360	0%	312	19.9%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
CNGB3	54714	genome.wustl.edu	37	8	87656094	87656094	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019098.4	-1	reviewed	p.R355*	1.000	252	0%	213	31%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
OTUD6B	51633	genome.wustl.edu	37	8	92082662	92082662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016023.3	+1	validated	p.R47I	1.000	282	0%	182	30.8%	5	40%	possibly_damaging(0.952)	tolerated(0.19)	neutral(0.445)	NULL
SLC26A7	115111	genome.wustl.edu	37	8	92375719	92375719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134266.1	+1	reviewed	p.K481Q	1.000	221	0%	296	17.9%	0	-	benign(0.299)	tolerated(0.36)	neutral(0.113)	NULL
SLC26A7	115111	genome.wustl.edu	37	8	92406210	92406210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134266.1	+1	reviewed	p.E626D	0.998	193	0.5%	175	18.3%	1	0%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_STAS,superfamily_STAS
INTS8	55656	genome.wustl.edu	37	8	95888711	95888711	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017864.2	+1	provisional	p.Q955	1.000	156	0%	170	22.4%	7	42.8%	-	-	-	NULL
GDF6	392255	genome.wustl.edu	37	8	97156938	97156938	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435084	-1	known	p.E324*	1.000	237	0%	165	17%	0	-	-	-	-	NULL
MTERFD1	51001	genome.wustl.edu	37	8	97251734	97251734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015942.3	-1	provisional	p.F413L	1.000	110	0%	112	23.2%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
STK3	6788	genome.wustl.edu	37	8	99591893	99591893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006281.2	-1	validated	p.S316L	1.000	433	0%	489	10.6%	5	0%	possibly_damaging(0.801)	tolerated(0.07)	deleterious(0.621)	NULL
STK3	6788	genome.wustl.edu	37	8	99718846	99718846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006281.2	-1	validated	p.R178H	1.000	205	0%	162	19.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
COX6C	1345	genome.wustl.edu	37	8	100904191	100904191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004374.2	-1	reviewed	p.R20Q	0.958	81	1.2%	89	34.8%	318	46.8%	benign(0.258)	tolerated(0.09)	neutral(0.324)	HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc
RGS22	26166	genome.wustl.edu	37	8	101020698	101020698	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015668.3	-1	validated	p.E756*	1.000	288	0%	311	19.3%	1	0%	-	-	-	superfamily_Regulator of G-protein signaling RGS
RGS22	26166	genome.wustl.edu	37	8	101075907	101075907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015668.3	-1	validated	p.K363N	0.000	208	0%	288	16.7%	0	-	possibly_damaging(0.566)	deleterious(0.02)	deleterious(0.577)	NULL
UBR5	51366	genome.wustl.edu	37	8	103299718	103299718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	p.D1634Y	1.000	280	0.4%	232	20.3%	30	13.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UBR5	51366	genome.wustl.edu	37	8	103323594	103323594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	p.S850Y	1.000	87	0%	80	13.8%	2	50%	benign(0.101)	deleterious(0.03)	neutral(0.372)	NULL
CTHRC1	115908	genome.wustl.edu	37	8	104388186	104388186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138455.2	+1	provisional	p.A124V	0.958	68	0%	77	20.8%	70	38.5%	possibly_damaging(0.68)	tolerated(1)	neutral(0.242)	NULL
LRP12	29967	genome.wustl.edu	37	8	105507435	105507435	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013437.4	-1	reviewed	p.S528*	1.000	137	0%	131	15.3%	1	0%	-	-	-	NULL
TTC35	9694	genome.wustl.edu	37	8	109482343	109482343	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014673.3	+1	provisional	p.E168*	1.000	103	0%	96	14.6%	11	0%	-	-	-	HMMPfam_TPR_2,superfamily_Prenyl_trans
NUDCD1	84955	genome.wustl.edu	37	8	110308709	110308709	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032869.3	-1	validated	p.F121	0.444	261	0%	201	35.8%	20	40%	-	-	-	NULL
SYBU	55638	genome.wustl.edu	37	8	110587801	110587801	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099744.1	-1	validated	p.F442	0.001	332	0%	243	11.9%	68	8.8%	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113323299	113323299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.R2598Q	1.000	113	0%	96	11.5%	0	-	probably_damaging(1)	tolerated(0.42)	deleterious(0.514)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113841997	113841997	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.E593*	1.000	166	0%	174	24.1%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ATAD2	29028	genome.wustl.edu	37	8	124358880	124358880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.F775V	0.651	82	0%	95	20%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124359507	124359507	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.F679	0.969	166	0%	153	28.8%	2	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MTSS1	9788	genome.wustl.edu	37	8	125580630	125580630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014751.4	-1	validated	p.R203Q	1.000	70	0%	81	21%	5	0%	probably_damaging(0.998)	tolerated(0.42)	deleterious(0.488)	HMMPfam_IMD
MTSS1	9788	genome.wustl.edu	37	8	125603395	125603395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014751.4	-1	validated	p.S97L	1.000	155	0%	141	31.2%	1	100%	benign(0.025)	tolerated(0.09)	neutral(0.297)	HMMPfam_IMD
ASAP1	50807	genome.wustl.edu	37	8	131149214	131149214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018482.2	-1	validated	p.S384Y	1.000	371	0%	328	18.6%	3	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ADCY8	114	genome.wustl.edu	37	8	131862025	131862025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115.2	-1	reviewed	p.F745L	1.000	199	0%	136	24.3%	0	-	benign(0.026)	tolerated(0.82)	neutral(0.002)	NULL
EFR3A	23167	genome.wustl.edu	37	8	132982784	132982784	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015137.3	+1	validated	p.F351	0.719	174	0%	157	38.2%	4	50%	-	-	-	superfamily_ARM repeat
EFR3A	23167	genome.wustl.edu	37	8	132982823	132982823	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015137.3	+1	validated	p.V364	0.251	174	0%	138	23.2%	6	33.3%	-	-	-	superfamily_ARM repeat
ZFAT	57623	genome.wustl.edu	37	8	135545208	135545208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020863.3	-1	reviewed	p.R995H	1.000	179	0%	95	28.4%	15	33.3%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM135B	51059	genome.wustl.edu	37	8	139158208	139158208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.K1178N	1.000	157	0%	148	31.8%	0	-	possibly_damaging(0.811)	tolerated(0.11)	deleterious(0.577)	HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases
PTK2	5747	genome.wustl.edu	37	8	141900790	141900790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005607.3	-1	reviewed	p.S38L	0.682	86	0%	72	26.4%	20	30%	possibly_damaging(0.858)	tolerated(0.06)	deleterious(0.653)	NULL
SLC45A4	57210	genome.wustl.edu	37	8	142227280	142227280	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080431.1	-1	provisional	p.S495	0.967	61	0%	46	23.9%	21	9.5%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
LY6K	54742	genome.wustl.edu	37	8	143783061	143783061	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017527.3	+1	validated	p.E107D	0.031	249	0%	214	29.9%	8	100%	possibly_damaging(0.892)	-	-	superfamily_Snake toxin-like
CYP11B1	1584	genome.wustl.edu	37	8	143957227	143957227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000497.3	-1	reviewed	p.R341H	1.000	33	0%	32	18.8%	0	-	possibly_damaging(0.62)	deleterious(0.03)	deleterious(0.581)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP11B2	1585	genome.wustl.edu	37	8	143999218	143999218	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000498.3	-1	reviewed	p.A13	0.001	60	0%	42	35.7%	0	-	-	-	-	NULL
SCRIB	23513	genome.wustl.edu	37	8	144877279	144877279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182706.3	-1	validated	p.R1259W	0.000	16	0%	10	50%	40	37.5%	probably_damaging(0.982)	deleterious(0.05)	deleterious(0.772)	NULL
ZNF7	7553	genome.wustl.edu	37	8	146068272	146068272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003416.2	+1	validated	p.S594A	0.000	117	0.9%	133	20.3%	3	66.6%	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KIAA2026	158358	genome.wustl.edu	37	9	5920867	5920867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.I1710T	1.000	134	0%	127	22.8%	7	28.5%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5921062	5921062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.S1645Y	1.000	169	0%	170	30.6%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
GLDC	2731	genome.wustl.edu	37	9	6605220	6605220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000170.2	-1	reviewed	p.D258Y	1.000	208	0%	149	12.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P
FREM1	158326	genome.wustl.edu	37	9	14750210	14750210	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144966.5	-1	reviewed	p.V1824	1.000	357	0%	364	12.6%	0	-	-	-	-	NULL
TTC39B	158219	genome.wustl.edu	37	9	15186968	15186968	+	Silent	SNP	C	C	T	rs192525613	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152574.2	-1	validated	p.T421	0.666	280	0%	237	34.6%	7	71.4%	-	-	-	HMMPfam_Deme6,superfamily_TPR-like
RRAGA	10670	genome.wustl.edu	37	9	19049949	19049949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006570.4	+1	validated	p.E98K	1.000	95	1.1%	78	28.2%	100	38%	benign(0.199)	deleterious(0.04)	neutral(0.368)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IFNA5	3442	genome.wustl.edu	37	9	21304974	21304974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002169.2	-1	validated	p.K94N	0.000	297	0%	263	14.8%	0	-	benign(0.231)	tolerated(0.07)	neutral(0.342)	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
TEK	7010	genome.wustl.edu	37	9	27158095	27158095	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000459.3	+1	reviewed	p.R107*	1.000	224	0%	179	18.4%	2	0%	-	-	-	HMMPfam_Ig_Tie2_1
TEK	7010	genome.wustl.edu	37	9	27228255	27228255	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000459.3	+1	reviewed	p.S1084	0.994	243	0%	227	20.7%	3	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ACO1	48	genome.wustl.edu	37	9	32430551	32430551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.D569N	0.964	191	0%	198	31.3%	4	75%	benign(0.016)	deleterious(0.04)	neutral(0.349)	superfamily_Aconitase iron-sulfur domain
DDX58	23586	genome.wustl.edu	37	9	32488887	32488887	+	Splice_Site	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014314.3	-1	reviewed	e7-2	1.000	113	0%	116	15.5%	0	-	-	-	-	-
TAF1L	138474	genome.wustl.edu	37	9	32634585	32634585	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.T331	0.999	355	0%	271	19.6%	0	-	-	-	-	NULL
AQP7	364	genome.wustl.edu	37	9	33387046	33387046	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001170.1	-1	reviewed	p.K63N	0.000	86	0%	88	20.5%	2	100%	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_MIP,superfamily_MIP
TRBV20OR9-2	6962	genome.wustl.edu	37	9	33618237	33618237	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379435	+1	known	p.P41	0.015	65	0%	49	10.2%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
ARID3C	138715	genome.wustl.edu	37	9	34625800	34625800	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017363.1	-1	reviewed	p.L110	0.997	274	0%	240	29.6%	0	-	-	-	-	HMMPfam_ARID,superfamily_ARID
FAM205A	259308	genome.wustl.edu	37	9	34723944	34723944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141917.1	-1	validated	p.R1098Q	0.000	103	0%	76	25%	0	-	benign(0.301)	tolerated(0.39)	neutral(0.109)	NULL
LOC730110	730110	genome.wustl.edu	37	9	35148545	35148545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342891.1	-1	model	p.A213T	0.000	107	0%	81	18.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RNF38	152006	genome.wustl.edu	37	9	36351115	36351115	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022781.4	-1	reviewed	p.Y420	0.993	214	0%	166	10.8%	7	14.2%	-	-	-	NULL
FBXO10	26267	genome.wustl.edu	37	9	37541343	37541343	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012166.2	-1	validated	p.Y141	0.637	154	0%	123	15.4%	7	14.2%	-	-	-	superfamily_Pectin_lyas_like
ANKRD18A	253650	genome.wustl.edu	37	9	38596351	38596351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399703	-1	known	p.M329R	0.261	140	0%	130	16.9%	0	-	possibly_damaging(0.526)	tolerated(0.34)	neutral(0.200)	NULL
LOC100288765	100288765	genome.wustl.edu	37	9	69830940	69830940	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342925.1	+1	model	p.V17	0.134	22	0%	20	20%	0	-	-	-	-	NULL
LOC100288765	100288765	genome.wustl.edu	37	9	69846605	69846605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342925.1	+1	model	p.I233M	0.879	22	0%	24	25%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KLF9	687	genome.wustl.edu	37	9	73002723	73002723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001206.2	-1	reviewed	p.R235Q	0.994	73	0%	57	24.6%	1	0%	probably_damaging(0.975)	tolerated(0.06)	deleterious(0.740)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77442835	77442835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.P234T	1.000	239	0%	178	19.7%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79323525	79323525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.S1222F	0.918	127	0%	149	20.8%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
CEP78	84131	genome.wustl.edu	37	9	80880451	80880451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098802.1	+1	validated	p.N598H	0.846	159	0%	161	16.1%	5	100%	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	NULL
CEP78	84131	genome.wustl.edu	37	9	80881609	80881609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098802.1	+1	validated	p.K700N	0.000	142	0%	153	29.4%	3	0%	unknown(0)	tolerated(0.11)	-	NULL
TLE1	7088	genome.wustl.edu	37	9	84199127	84199127	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005077.3	-1	provisional	p.E767*	1.000	276	0%	270	34.1%	47	31.9%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KIF27	55582	genome.wustl.edu	37	9	86518646	86518646	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017576.1	-1	provisional	p.E263*	1.000	105	0%	92	25%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
AGTPBP1	23287	genome.wustl.edu	37	9	88247611	88247611	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015239.2	-1	validated	p.E621*	1.000	91	0%	85	21.2%	1	0%	-	-	-	NULL
NFIL3	4783	genome.wustl.edu	37	9	94171922	94171922	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005384.2	-1	validated	p.L365	0.003	97	0%	108	38%	4	25%	-	-	-	HMMPfam_Vert_IL3-reg_TF
NOL8	55035	genome.wustl.edu	37	9	95069171	95069171	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017948.5	-1	validated	p.F941C	1.000	324	0%	345	24.9%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ASPN	54829	genome.wustl.edu	37	9	95219688	95219688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017680.3	-1	validated	p.S342Y	1.000	284	0%	310	20%	0	-	possibly_damaging(0.609)	deleterious(0)	deleterious(0.655)	NULL
BICD2	23299	genome.wustl.edu	37	9	95482641	95482641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003800.1	-1	reviewed	p.D335N	0.997	73	1.4%	68	39.7%	18	44.4%	possibly_damaging(0.54)	tolerated(0.06)	deleterious(0.506)	HMMPfam_BicD
ZNF484	83744	genome.wustl.edu	37	9	95609605	95609605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031486.1	-1	provisional	p.K488N	1.000	194	0%	171	25.1%	0	-	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PHF2	5253	genome.wustl.edu	37	9	96422789	96422789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005392.3	+1	reviewed	p.E549K	1.000	64	0%	36	13.9%	14	0%	benign(0.313)	deleterious(0.02)	deleterious(0.481)	NULL
BARX1	56033	genome.wustl.edu	37	9	96715279	96715279	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021570.3	-1	reviewed	p.K138	0.516	19	0%	21	42.9%	0	-	-	-	-	superfamily_Homeodomain-like
C9orf102	375748	genome.wustl.edu	37	9	98735344	98735344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407474	+1	known	p.S85L	0.000	182	0%	203	22.7%	1	0%	benign(0.005)	tolerated(0.38)	neutral(0.018)	NULL
C9orf102	375748	genome.wustl.edu	37	9	98774646	98774646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407474	+1	known	p.E253K	0.131	93	0%	125	13.6%	0	-	possibly_damaging(0.489)	tolerated(0.24)	neutral(0.200)	NULL
SLC35D2	11046	genome.wustl.edu	37	9	99126756	99126756	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007001.2	-1	validated	p.I90S	1.000	239	0%	236	26.7%	4	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	PatternScan_PROTEIN_KINASE_ATP
ZNF367	195828	genome.wustl.edu	37	9	99157130	99157130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153695.3	-1	validated	p.E222D	1.000	203	0%	151	31.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
AAED1	195827	genome.wustl.edu	37	9	99408290	99408290	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446045	-1	known	p.K100Q	0.940	152	0%	168	19.6%	1	100%	-	-	-	NULL
ZNF510	22869	genome.wustl.edu	37	9	99522233	99522233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014930.1	-1	provisional	p.K293N	0.000	251	0%	220	29.1%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100137785	100137785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020893.1	+1	predicted	p.L1575I	0.902	160	0%	179	29.6%	24	29.1%	probably_damaging(0.962)	tolerated(0.06)	deleterious(0.728)	NULL
TDRD7	23424	genome.wustl.edu	37	9	100243217	100243217	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014290.2	+1	validated	p.I803	0.993	449	0%	368	17.9%	9	44.4%	-	-	-	NULL
LPPR1	54886	genome.wustl.edu	37	9	104048423	104048423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017753.2	+1	reviewed	p.S97*	1.000	178	0%	160	20%	0	-	-	-	-	NULL
GRIN3A	116443	genome.wustl.edu	37	9	104433316	104433316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.E460K	1.000	162	0%	137	29.2%	0	-	probably_damaging(0.971)	tolerated(0.42)	neutral(0.427)	superfamily_SSF53822
SMC2	10592	genome.wustl.edu	37	9	106885512	106885512	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042550.1	+1	validated	p.I752	1.000	224	0%	188	12.8%	1	100%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR13C4	138804	genome.wustl.edu	37	9	107288811	107288811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001919.1	-1	provisional	p.R227Q	0.000	207	0%	201	32.3%	0	-	benign(0.141)	tolerated(0.08)	neutral(0.312)	HMMPfam_7tm_1,superfamily_SSF81321
ABCA1	19	genome.wustl.edu	37	9	107565591	107565591	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005502.2	-1	reviewed	p.K1522	1.000	439	0%	291	30.6%	1	0%	-	-	-	NULL
ABCA1	19	genome.wustl.edu	37	9	107620889	107620889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005502.2	-1	reviewed	p.S212P	0.005	202	0%	192	16.7%	2	0%	possibly_damaging(0.564)	tolerated(0.16)	neutral(0.252)	NULL
SLC44A1	23446	genome.wustl.edu	37	9	108118629	108118629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080546.3	+1	validated	p.E213*	1.000	243	0%	226	23%	15	0%	-	-	-	NULL
ACTL7A	10881	genome.wustl.edu	37	9	111625720	111625720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006687.2	+1	reviewed	p.R373H	0.998	67	0%	36	11.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PTPN3	5774	genome.wustl.edu	37	9	112199195	112199195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002829.3	-1	reviewed	p.D215N	1.000	139	0%	162	27.2%	4	25%	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729
SVEP1	79987	genome.wustl.edu	37	9	113251994	113251994	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.I622	1.000	316	0%	273	17.9%	2	0%	-	-	-	HMMPfam_HYR
SVEP1	79987	genome.wustl.edu	37	9	113275356	113275356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.E385K	1.000	291	0%	282	29.1%	0	-	benign(0.4)	tolerated(0.1)	neutral(0.415)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Growth factor receptor domain,superfamily_Complement control module/SCR domain
C9orf84	158401	genome.wustl.edu	37	9	114456527	114456527	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173521.3	-1	validated	p.K1036T	0.858	144	0%	169	29%	0	-	benign(0.006)	tolerated(0.28)	neutral(0.032)	NULL
C9orf84	158401	genome.wustl.edu	37	9	114462285	114462285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173521.3	-1	validated	p.I980M	0.998	143	0%	192	20.3%	0	-	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	NULL
C9orf84	158401	genome.wustl.edu	37	9	114489972	114489972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173521.3	-1	validated	p.R528Q	0.995	239	0%	258	27.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C9orf84	158401	genome.wustl.edu	37	9	114490225	114490225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173521.3	-1	validated	p.E444*	0.847	260	0%	263	19.4%	0	-	-	-	-	NULL
UGCG	7357	genome.wustl.edu	37	9	114677005	114677005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003358.1	+1	reviewed	p.F73L	1.000	151	0%	192	21.9%	5	20%	possibly_damaging(0.812)	tolerated(0.06)	deleterious(0.628)	superfamily_SSF53448
ZNF883	169834	genome.wustl.edu	37	9	115760358	115760358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101338.1	-1	validated	p.R61I	0.966	145	0%	162	21%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ASTN2	23245	genome.wustl.edu	37	9	119738397	119738397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.L583I	1.000	171	0%	133	10.5%	0	-	possibly_damaging(0.917)	tolerated(0.16)	neutral(0.427)	NULL
ASTN2	23245	genome.wustl.edu	37	9	119976963	119976963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.Q230R	1.000	34	0%	23	26.1%	1	0%	benign(0.011)	tolerated(1)	neutral(0.001)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123182111	123182111	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.N1378H	0.647	318	0.3%	265	23.4%	11	54.5%	benign(0.223)	deleterious(0.01)	neutral(0.428)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123234078	123234078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.Q602H	0.487	200	0%	194	20.1%	6	33.3%	possibly_damaging(0.66)	deleterious(0.02)	deleterious(0.616)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123301377	123301377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.R150Q	0.950	340	0%	361	35.7%	2	50%	benign(0.017)	tolerated(0.5)	neutral(0.011)	NULL
DAB2IP	153090	genome.wustl.edu	37	9	124534954	124534954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032552.2	+1	validated	p.S688F	1.000	41	0%	25	24%	13	7.6%	possibly_damaging(0.909)	deleterious(0.03)	deleterious(0.726)	NULL
OR1B1	347169	genome.wustl.edu	37	9	125391619	125391619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004450.1	-1	provisional	p.R66C	0.004	126	0%	86	33.7%	0	-	possibly_damaging(0.588)	tolerated(0.07)	deleterious(0.522)	HMMPfam_7tm_1,superfamily_SSF81321
ZBTB6	10773	genome.wustl.edu	37	9	125673591	125673591	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006626.4	-1	provisional	p.S254*	1.000	152	0%	127	16.5%	4	25%	-	-	-	NULL
SCAI	286205	genome.wustl.edu	37	9	127734010	127734010	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173690.4	-1	reviewed	p.E528*	1.000	220	0.5%	236	30.1%	1	0%	-	-	-	NULL
SCAI	286205	genome.wustl.edu	37	9	127828290	127828290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173690.4	-1	reviewed	p.R49I	0.064	171	0%	163	29.4%	0	-	unknown(0)	-	-	NULL
FAM125B	89853	genome.wustl.edu	37	9	129243687	129243687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033446.1	+1	validated	p.S266Y	1.000	474	0.2%	445	18%	8	25%	benign(0.025)	deleterious(0.01)	neutral(0.407)	HMMPfam_DUF2464
LMX1B	4010	genome.wustl.edu	37	9	129458721	129458721	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002316.3	+1	reviewed	p.F370	1.000	36	0%	39	28.2%	0	-	-	-	-	NULL
GLE1	2733	genome.wustl.edu	37	9	131295925	131295925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003722.1	+1	reviewed	p.E482D	1.000	150	0%	157	22.3%	8	37.5%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_GLE1
PRDM12	59335	genome.wustl.edu	37	9	133543581	133543581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021619.2	+1	validated	p.D151N	1.000	140	0.7%	93	32.3%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMSmart_SM00317,superfamily_SET domain
LAMC3	10319	genome.wustl.edu	37	9	133927944	133927944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006059.3	+1	reviewed	p.P566L	0.114	44	0%	60	36.7%	5	0%	benign(0.004)	tolerated(0.2)	neutral(0.049)	HMMPfam_Laminin_B
RAPGEF1	2889	genome.wustl.edu	37	9	134585033	134585033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198679.1	-1	reviewed	p.R13Q	0.939	168	0%	167	24.6%	0	-	possibly_damaging(0.526)	deleterious(0.04)	deleterious(0.526)	NULL
AK8	158067	genome.wustl.edu	37	9	135602888	135602888	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152572.2	-1	validated	p.I385	0.045	138	0%	107	34.6%	8	50%	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
TSC1	7248	genome.wustl.edu	37	9	135782125	135782125	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000368.4	-1	reviewed	p.K477N	0.999	343	0%	350	30.3%	0	-	possibly_damaging(0.753)	tolerated(0.07)	deleterious(0.596)	HMMPfam_Hamartin
TMEM8C	389827	genome.wustl.edu	37	9	136384131	136384131	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080483.2	-1	validated	p.F88	0.919	51	0%	37	21.6%	0	-	-	-	-	NULL
VAV2	7410	genome.wustl.edu	37	9	136637093	136637093	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134398.1	-1	reviewed	p.F737	0.992	268	0%	201	32.3%	36	41.6%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
COL5A1	1289	genome.wustl.edu	37	9	137623939	137623939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000093.3	+1	reviewed	p.K452T	1.000	213	0%	247	29.1%	5	0%	unknown(0)	deleterious(0)	-	NULL
KCNT1	57582	genome.wustl.edu	37	9	138645825	138645825	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020822.2	+1	validated	p.S159	0.054	62	0%	41	14.6%	0	-	-	-	-	NULL
KCNT1	57582	genome.wustl.edu	37	9	138656879	138656879	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020822.2	+1	validated	p.F346	0.982	58	0%	35	14.3%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
GRIN1	2902	genome.wustl.edu	37	9	140034094	140034094	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007327.3	+1	reviewed	p.R52	0.914	32	0%	19	52.6%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
TPRN	286262	genome.wustl.edu	37	9	140093786	140093786	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173691.3	-1	validated	p.E399*	1.000	36	0%	42	26.2%	9	0%	-	-	-	NULL
DIP2C	22982	genome.wustl.edu	37	10	428647	428647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014974.2	-1	reviewed	p.R644Q	0.993	90	0%	59	30.5%	5	60%	possibly_damaging(0.92)	deleterious(0.04)	deleterious(0.720)	superfamily_SSF56801
IDI2-AS1	55853	genome.wustl.edu	37	10	1089812	1089812	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024628.1	+1	validated	NULL	0.000	56	0%	48	27.1%	1	100%	-	-	-	-
AKR1C4	1109	genome.wustl.edu	37	10	5254676	5254676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001818.2	+1	reviewed	p.R223Q	0.155	160	0.6%	154	33.8%	0	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
PRKCQ	5588	genome.wustl.edu	37	10	6528025	6528025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006257.2	-1	reviewed	p.A291V	1.000	80	0%	51	33.3%	7	42.8%	benign(0.175)	tolerated(0.24)	neutral(0.053)	NULL
ITIH2	3698	genome.wustl.edu	37	10	7785155	7785155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002216.2	+1	validated	p.K714N	0.999	150	0%	171	20.5%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
CAMK1D	57118	genome.wustl.edu	37	10	12595237	12595237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153498.2	+1	reviewed	p.E36K	1.000	311	0%	296	19.6%	1	100%	benign(0.044)	tolerated(0.28)	neutral(0.034)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CAMK1D	57118	genome.wustl.edu	37	10	12811681	12811681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153498.2	+1	reviewed	p.L150I	1.000	246	0%	204	29.4%	2	0%	possibly_damaging(0.604)	deleterious(0.04)	deleterious(0.558)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PHYH	5264	genome.wustl.edu	37	10	13325800	13325800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006214.3	-1	reviewed	p.E240K	0.649	170	0%	191	26.7%	20	40%	benign(0.001)	tolerated(0.43)	neutral(0.013)	HMMPfam_PhyH
PHYH	5264	genome.wustl.edu	37	10	13336522	13336522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006214.3	-1	reviewed	p.S107L	0.001	264	0%	229	40.2%	4	25%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_PhyH
OLAH	55301	genome.wustl.edu	37	10	15115213	15115213	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018324.2	+1	validated	p.S314	0.000	170	1.2%	186	28%	0	-	-	-	-	NULL
CUBN	8029	genome.wustl.edu	37	10	16893411	16893411	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.T3162	0.002	148	0%	105	18.1%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MLLT10	8028	genome.wustl.edu	37	10	21962780	21962780	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004641.2	+1	validated	p.K518T	1.000	141	0%	136	33.1%	4	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
COMMD3	23412	genome.wustl.edu	37	10	22606835	22606835	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444869	+1	known	p.R54*	0.997	121	0%	108	25%	46	26%	-	-	-	HMMPfam_HCaRG
SPAG6	9576	genome.wustl.edu	37	10	22690107	22690107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012443.2	+1	reviewed	p.K405N	1.000	287	0%	276	20.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PIP4K2A	5305	genome.wustl.edu	37	10	22830760	22830760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005028.4	-1	reviewed	p.D337N	1.000	73	0%	68	11.8%	26	7.6%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
ARMC3	219681	genome.wustl.edu	37	10	23248395	23248395	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173081.3	+1	validated	p.K143N	1.000	89	0%	70	21.4%	5	20%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ARHGAP21	57584	genome.wustl.edu	37	10	24909164	24909164	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.R554*	1.000	141	0%	120	27.5%	2	50%	-	-	-	NULL
GPR158	57512	genome.wustl.edu	37	10	25861594	25861594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.L511I	1.000	539	0%	509	29.3%	0	-	possibly_damaging(0.913)	tolerated(0.14)	deleterious(0.614)	HMMPfam_7tm_3
MYO3A	53904	genome.wustl.edu	37	10	26315388	26315388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.D294Y	1.000	179	0%	202	20.8%	0	-	possibly_damaging(0.658)	deleterious(0.03)	deleterious(0.597)	superfamily_Kinase_like,superfamily_SSF52540
ABI1	10006	genome.wustl.edu	37	10	27040543	27040543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005470.3	-1	validated	p.K445N	0.998	185	1.1%	169	30.2%	11	18.1%	benign(0.148)	deleterious(0.01)	neutral(0.419)	superfamily_SH3-domain
YME1L1	10730	genome.wustl.edu	37	10	27431369	27431369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139312.1	-1	reviewed	p.R183Q	1.000	209	0%	231	21.6%	12	16.6%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	NULL
PTCHD3	374308	genome.wustl.edu	37	10	27687594	27687594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.V645I	0.000	152	0%	143	16.1%	0	-	benign(0.143)	tolerated(0.19)	neutral(0.062)	HMMPfam_Patched
PTCHD3	374308	genome.wustl.edu	37	10	27692236	27692236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.S421Y	0.915	150	0%	123	18.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
PTCHD3	374308	genome.wustl.edu	37	10	27702873	27702873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.E103K	0.000	29	0%	15	46.7%	0	-	benign(0.35)	tolerated(0.21)	neutral(0.155)	NULL
WAC	51322	genome.wustl.edu	37	10	28872394	28872394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016628.3	+1	reviewed	p.S114Y	1.000	285	0%	290	20.3%	23	13%	benign(0.09)	deleterious(0)	neutral(0.451)	NULL
SVIL	6840	genome.wustl.edu	37	10	29812790	29812790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021738.2	-1	reviewed	p.S918L	0.014	243	0.4%	206	17.5%	8	62.5%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
NRP1	8829	genome.wustl.edu	37	10	33552596	33552596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003873.5	-1	validated	p.E212D	1.000	114	0%	83	19.3%	4	0%	possibly_damaging(0.687)	tolerated(0.72)	neutral(0.247)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ANKRD30A	91074	genome.wustl.edu	37	10	37425564	37425564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.R206L	0.000	156	0%	142	16.9%	0	-	possibly_damaging(0.92)	tolerated(0.05)	deleterious(0.716)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD30A	91074	genome.wustl.edu	37	10	37438593	37438593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.P464T	0.001	775	0.1%	703	19.9%	0	-	possibly_damaging(0.771)	deleterious(0.01)	deleterious(0.692)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37505221	37505221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.K938N	0.714	197	0%	193	35.2%	0	-	possibly_damaging(0.45)	tolerated(1)	neutral(0.147)	NULL
ZNF33A	7581	genome.wustl.edu	37	10	38305827	38305827	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006954.1	+1	validated	p.S13*	0.980	277	0%	230	13.9%	7	28.5%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF33A	7581	genome.wustl.edu	37	10	38345036	38345036	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006954.1	+1	validated	p.E662*	1.000	228	0%	246	32.1%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF33A	7581	genome.wustl.edu	37	10	38345326	38345326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006954.1	+1	validated	p.F758L	0.021	238	0%	217	26.3%	3	66.6%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF33B	7582	genome.wustl.edu	37	10	43090003	43090003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006955.1	-1	provisional	p.S132Y	0.134	203	0%	203	27.6%	2	50%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
HNRNPF	3185	genome.wustl.edu	37	10	43882424	43882424	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098204.1	-1	reviewed	p.N303	0.973	59	0%	53	32.1%	212	36.7%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
WDFY4	57705	genome.wustl.edu	37	10	49939278	49939278	+	Missense_Mutation	SNP	G	G	A	rs148176877	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.R418Q	0.119	111	0%	85	43.5%	1	0%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	superfamily_ARM repeat
C10orf71	118461	genome.wustl.edu	37	10	50530877	50530877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135196.1	+1	validated	p.A96V	0.998	107	0%	99	29.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHAT	1103	genome.wustl.edu	37	10	50856606	50856606	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020549.4	+1	reviewed	p.F445	0.403	66	0%	41	39%	0	-	-	-	-	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases
PCDH15	65217	genome.wustl.edu	37	10	55581658	55581658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.G1950E	0.494	520	0%	414	27.3%	0	-	unknown(0)	tolerated(0.19)	-	NULL
BICC1	80114	genome.wustl.edu	37	10	60556107	60556107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080512.1	+1	reviewed	p.I396S	1.000	266	0%	276	22.1%	7	57.1%	probably_damaging(0.959)	tolerated(0.06)	deleterious(0.725)	NULL
ANK3	288	genome.wustl.edu	37	10	61819571	61819571	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514197	-1	known	p.S166L	0.760	179	0.6%	143	26.6%	15	20%	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61926409	61926409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.R852C	1.000	168	0%	154	13.6%	5	0%	benign(0.003)	tolerated(0.14)	neutral(0.249)	superfamily_ANK
RHOBTB1	9886	genome.wustl.edu	37	10	62637805	62637805	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014836.4	-1	reviewed	p.P529	0.974	279	0.7%	272	21.7%	9	33.3%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
JMJD1C	221037	genome.wustl.edu	37	10	64966741	64966741	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032776.1	-1	validated	p.K1563T	1.000	156	0%	177	29.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64974909	64974909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032776.1	-1	validated	p.N340H	1.000	110	0%	138	15.2%	1	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64975118	64975118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032776.1	-1	validated	p.R307I	1.000	853	0%	731	20.4%	9	0%	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	NULL
LRRTM3	347731	genome.wustl.edu	37	10	68687134	68687134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178011.3	+1	validated	p.R154W	1.000	82	1.2%	89	38.2%	0	-	possibly_damaging(0.852)	deleterious(0.05)	deleterious(0.673)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
CTNNA3	29119	genome.wustl.edu	37	10	69281633	69281633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127384.1	-1	validated	p.E182D	1.000	214	0%	240	15.4%	0	-	benign(0.407)	tolerated(0.62)	neutral(0.136)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
STOX1	219736	genome.wustl.edu	37	10	70645698	70645698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130161.2	+1	reviewed	p.D716N	0.042	120	0%	113	36.3%	3	33.3%	benign(0.008)	tolerated(0.06)	neutral(0.323)	NULL
STOX1	219736	genome.wustl.edu	37	10	70646106	70646106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130161.2	+1	reviewed	p.E852K	0.570	133	0%	141	13.5%	2	0%	benign(0.011)	tolerated(0.84)	neutral(0.001)	NULL
DDX50	79009	genome.wustl.edu	37	10	70673159	70673159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024045.1	+1	reviewed	p.R257Q	1.000	258	0.4%	224	37.1%	11	45.4%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1279	26128	genome.wustl.edu	37	10	70775486	70775486	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015634.3	+1	reviewed	p.E394*	1.000	219	0%	225	20.4%	1	100%	-	-	-	NULL
HKDC1	80201	genome.wustl.edu	37	10	71025375	71025375	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025130.3	+1	validated	p.L803	1.000	20	0%	18	22.2%	30	46.6%	-	-	-	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain
KIAA1274	27143	genome.wustl.edu	37	10	72294580	72294580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014431.2	+1	validated	p.R403Q	0.007	167	0%	127	28.3%	9	11.1%	benign(0.034)	tolerated(0.11)	neutral(0.274)	NULL
C10orf27	219793	genome.wustl.edu	37	10	72531153	72531153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394982	-1	known	p.E66K	0.000	288	0%	197	25.9%	0	-	unknown(0)	-	-	NULL
C10orf55	414236	genome.wustl.edu	37	10	75671524	75671524	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001791.2	-1	validated	p.K101	0.000	61	0%	50	28%	1	0%	-	-	-	NULL
DLG5	9231	genome.wustl.edu	37	10	79567688	79567688	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004747.3	-1	reviewed	p.D1554	0.042	48	0%	34	11.8%	59	5%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
RGR	5995	genome.wustl.edu	37	10	86012658	86012658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002921.3	+1	reviewed	p.V139A	0.997	139	0%	115	12.2%	0	-	benign(0.045)	tolerated(0.35)	neutral(0.023)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC100131699	100131699	genome.wustl.edu	37	10	86320323	86320323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001723921.2	-1	model	p.S149Y	1.000	25	0%	35	20%	9	0%	-	-	-	NULL
LOC100131699	100131699	genome.wustl.edu	37	10	86320773	86320773	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001723921.2	-1	model	p.T10	1.000	4	0.000	11	0.364	237	0%	-	-	-	NULL
GRID1	2894	genome.wustl.edu	37	10	87898628	87898628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017551.2	-1	reviewed	p.R225H	1.000	95	0%	66	15.2%	0	-	benign(0.241)	tolerated(0.15)	neutral(0.266)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
MINPP1	9562	genome.wustl.edu	37	10	89312182	89312182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004897.4	+1	validated	p.T471A	0.036	72	0%	55	34.5%	0	-	benign(0.071)	tolerated(0.19)	neutral(0.054)	superfamily_Phosphoglycerate mutase-like
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130Q	1.000	287	0%	287	32.8%	19	68.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89711983	89711983	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.E201*	1.000	220	0%	208	33.7%	14	0%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
ACTA2	59	genome.wustl.edu	37	10	90707098	90707098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141945.1	-1	reviewed	p.E59K	1.000	637	0%	448	18.5%	84	1.1%	benign(0.077)	-	-	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,superfamily_Actin-like ATPase domain
SLC16A12	387700	genome.wustl.edu	37	10	91192943	91192943	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213606.3	-1	validated	p.E447*	0.998	168	0%	195	15.9%	3	0%	-	-	-	superfamily_MFS_gen_substrate_transporter
KIF20B	9585	genome.wustl.edu	37	10	91468936	91468936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.E54K	0.999	88	0%	76	17.1%	0	-	benign(0.066)	tolerated(0.38)	neutral(0.022)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91497373	91497373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.K885N	0.234	72	0%	79	11.4%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
BTAF1	9044	genome.wustl.edu	37	10	93744020	93744020	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003972.2	+1	validated	p.L762	0.960	147	0%	132	30.3%	2	100%	-	-	-	superfamily_ARM repeat
MARCH5	54708	genome.wustl.edu	37	10	94070983	94070983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017824.4	+1	validated	p.H43N	1.000	250	0.4%	226	19%	52	44.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00744,HMMPfam_zf-C3HC4
MYOF	26509	genome.wustl.edu	37	10	95111509	95111509	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.F1192	0.982	298	0%	315	21.6%	2	50%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SLC35G1	159371	genome.wustl.edu	37	10	95660938	95660938	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134658.1	+1	validated	p.L263	0.045	264	0%	256	14.8%	3	33.3%	-	-	-	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE
HELLS	3070	genome.wustl.edu	37	10	96356657	96356657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018063.3	+1	reviewed	p.K763N	0.992	65	0%	92	16.3%	0	-	benign(0.081)	tolerated(0.44)	neutral(0.019)	NULL
CYP2C8	1558	genome.wustl.edu	37	10	96827303	96827303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000770.3	-1	reviewed	p.R105I	0.000	344	0%	294	34.4%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
SORBS1	10580	genome.wustl.edu	37	10	97111111	97111111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034954.1	-1	validated	p.R746Q	1.000	172	0%	134	13.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
LCOR	84458	genome.wustl.edu	37	10	98714831	98714831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032440.3	+1	validated	p.P152S	1.000	75	0%	79	24.1%	2	50%	benign(0.048)	tolerated(0.2)	neutral(0.052)	NULL
C10orf12	26148	genome.wustl.edu	37	10	98742644	98742644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015652.2	+1	predicted	p.F499L	0.000	26	0%	35	25.7%	0	-	benign(0)	tolerated(1)	-	NULL
RRP12	23223	genome.wustl.edu	37	10	99132855	99132855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015179.3	-1	validated	p.R710H	1.000	52	0%	38	31.6%	35	45.7%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_ARM repeat
RRP12	23223	genome.wustl.edu	37	10	99148023	99148023	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015179.3	-1	validated	p.T335P	1.000	50	2%	54	35.2%	29	37.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PGAM1	5223	genome.wustl.edu	37	10	99190736	99190736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002629.2	+1	provisional	p.E147K	1.000	163	0%	184	33.2%	138	44.9%	benign(0.012)	tolerated(0.71)	neutral(0.002)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
ENTPD7	57089	genome.wustl.edu	37	10	101458520	101458520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020354.3	+1	validated	p.E414K	1.000	133	0%	121	28.9%	8	37.5%	possibly_damaging(0.857)	tolerated(0.08)	deleterious(0.631)	HMMPfam_GDA1_CD39
ABCC2	1244	genome.wustl.edu	37	10	101571341	101571341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.S650L	0.000	185	0%	165	37%	1	0%	benign(0)	tolerated(0.38)	neutral(0.018)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC2	1244	genome.wustl.edu	37	10	101578850	101578850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.R815Q	0.998	133	0%	108	22.2%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC2	1244	genome.wustl.edu	37	10	101591438	101591438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.A985V	0.000	216	0%	189	29.1%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SEC31B	25956	genome.wustl.edu	37	10	102267212	102267212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015490.3	-1	reviewed	p.S251L	0.998	100	0%	60	20%	0	-	benign(0.136)	deleterious(0.02)	neutral(0.395)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BTRC	8945	genome.wustl.edu	37	10	103295126	103295126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033637.2	+1	reviewed	p.T455A	1.000	135	0%	161	15.5%	4	50%	benign(0.215)	deleterious(0.03)	neutral(0.386)	HMMSmart_SM00320,superfamily_WD40 repeat-like
GBF1	8729	genome.wustl.edu	37	10	104136456	104136456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004193.1	+1	provisional	p.S1395L	1.000	76	0%	83	15.7%	94	29.7%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	NULL
PDCD11	22984	genome.wustl.edu	37	10	105176274	105176274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014976.1	+1	validated	p.K515N	1.000	167	0%	141	12.1%	9	22.2%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_S1,superfamily_Nucleic_acid_OB,HMMSmart_S1
SH3PXD2A	9644	genome.wustl.edu	37	10	105561052	105561052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014631.2	-1	validated	p.F47L	1.000	143	0%	124	33.1%	1	100%	possibly_damaging(0.88)	tolerated(0.09)	deleterious(0.639)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
SLK	9748	genome.wustl.edu	37	10	105762314	105762314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.E460*	0.895	114	0%	132	25%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
WDR96	80217	genome.wustl.edu	37	10	105900610	105900610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025145.5	-1	provisional	p.S1474Y	0.997	140	0%	166	21.1%	1	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_WD40 repeat-like
ADD3	120	genome.wustl.edu	37	10	111882009	111882009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016824.3	+1	reviewed	p.E368K	1.000	386	0%	338	21.6%	22	45.4%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
DUSP5	1847	genome.wustl.edu	37	10	112269977	112269977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004419.3	+1	reviewed	p.E316D	1.000	40	0%	34	29.4%	24	33.3%	benign(0.004)	tolerated(0.12)	neutral(0.261)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
SMC3	9126	genome.wustl.edu	37	10	112360248	112360248	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005445.3	+1	reviewed	p.R827*	1.000	112	2.7%	111	20.7%	0	-	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPAM	57678	genome.wustl.edu	37	10	113941517	113941517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020918.4	-1	validated	p.G9D	1.000	305	0.3%	251	21.1%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ACSL5	51703	genome.wustl.edu	37	10	114181416	114181416	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016234.3	+1	reviewed	p.W516*	1.000	147	0.7%	128	18%	145	2%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
NRAP	4892	genome.wustl.edu	37	10	115413821	115413821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198060.2	-1	validated	p.E142K	0.992	197	0%	182	19.2%	0	-	benign(0.011)	tolerated(0.12)	neutral(0.261)	NULL
ABLIM1	3983	genome.wustl.edu	37	10	116331101	116331101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002313.5	-1	reviewed	p.A210T	1.000	188	0%	165	26.1%	7	57.1%	benign(0.406)	tolerated(1)	neutral(0.131)	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
TRUB1	142940	genome.wustl.edu	37	10	116731930	116731930	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139169.4	+1	validated	p.S211	0.965	265	0%	216	11.1%	0	-	-	-	-	HMMPfam_TruB_N,superfamily_PsdUridine_synth_cat_dom
ATRNL1	26033	genome.wustl.edu	37	10	117045791	117045791	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207303.2	+1	validated	p.E767*	1.000	215	0%	220	29.1%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
EIF3A	8661	genome.wustl.edu	37	10	120810755	120810755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003750.2	-1	validated	p.L759V	0.997	213	0%	206	18%	35	37.1%	unknown(0)	tolerated(0.28)	-	NULL
DHX32	55760	genome.wustl.edu	37	10	127569154	127569154	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018180.2	-1	reviewed	p.I80	0.291	193	0%	200	11.5%	13	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
C10orf90	118611	genome.wustl.edu	37	10	128192675	128192675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004298.2	-1	validated	p.S365Y	0.000	166	0%	123	25.2%	0	-	probably_damaging(0.957)	tolerated(0.22)	neutral(0.443)	NULL
NPS	594857	genome.wustl.edu	37	10	129350793	129350793	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030013.1	+1	provisional	p.E54*	0.002	242	0%	222	12.2%	0	-	-	-	-	NULL
PTPRE	5791	genome.wustl.edu	37	10	129881129	129881129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006504.4	+1	reviewed	p.D688Y	1.000	306	0.7%	293	26.3%	0	-	benign(0.022)	deleterious(0.03)	neutral(0.365)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MKI67	4288	genome.wustl.edu	37	10	129901854	129901854	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.T2750	0.000	249	0%	224	34.4%	15	26.6%	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905532	129905532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.F1524L	0.000	679	0.1%	546	28.8%	8	25%	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_K167R
PPP2R2D	55844	genome.wustl.edu	37	10	133754154	133754154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455566	+1	known	p.E114K	1.000	146	0%	139	12.9%	2	50%	benign(0.08)	tolerated(0.22)	neutral(0.048)	superfamily_WD40 repeat-like
FRG2B	441581	genome.wustl.edu	37	10	135438926	135438926	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080998.1	-1	provisional	p.R172*	0.191	409	0.2%	315	28.3%	0	-	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1247910	1247910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.D89N	1.000	50	0%	26	23.1%	8	25%	probably_damaging(1)	-	-	HMMPfam_VWD,HMMSmart_SM00216
ENSG00000182208	0	genome.wustl.edu	37	11	1492564	1492564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399693	-1	known	p.K151E	1.000	82	0%	48	37.5%	127	40.9%	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein
KRTAP5-3	387266	genome.wustl.edu	37	11	1629094	1629094	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012708.2	-1	validated	p.C174	0.998	210	0%	154	13.6%	0	-	-	-	-	PatternScan_VWFC_1
NAP1L4	4676	genome.wustl.edu	37	11	2993395	2993395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005969.3	-1	reviewed	p.F84L	1.000	292	0.3%	288	11.1%	20	15%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_NAP
OR52K2	119774	genome.wustl.edu	37	11	4470956	4470956	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005172.2	+1	validated	p.C129*	0.180	179	0%	145	25.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52A1	23538	genome.wustl.edu	37	11	5173501	5173501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012375.2	-1	validated	p.F33L	1.000	81	0%	63	20.6%	0	-	benign(0.034)	tolerated(0.17)	neutral(0.061)	superfamily_Family A G protein-coupled receptor-like
OR52H1	390067	genome.wustl.edu	37	11	5566278	5566278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005289.1	-1	provisional	p.R159Q	0.010	107	0%	91	25.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52H1	390067	genome.wustl.edu	37	11	5566459	5566459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005289.1	-1	provisional	p.E99K	0.028	74	0%	65	13.8%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM22	10346	genome.wustl.edu	37	11	5717567	5717567	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006074.3	+1	reviewed	p.C35	0.997	166	0%	120	23.3%	69	36.2%	-	-	-	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
DNHD1	144132	genome.wustl.edu	37	11	6566506	6566506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.K1446M	0.992	105	0%	56	10.7%	2	0%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_DHC_N2
DNHD1	144132	genome.wustl.edu	37	11	6578770	6578770	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.L2749	0.000	87	0%	65	20%	0	-	-	-	-	NULL
TAF10	6881	genome.wustl.edu	37	11	6632529	6632529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006284.2	-1	reviewed	p.R153Q	1.000	184	0%	147	20.4%	512	29.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFIID_30kDa
DCHS1	8642	genome.wustl.edu	37	11	6655524	6655524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.D604G	1.000	57	0%	51	25.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR2D2	120776	genome.wustl.edu	37	11	6912941	6912941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003700.1	-1	provisional	p.S264Y	1.000	340	0%	271	17.3%	0	-	probably_damaging(0.964)	deleterious(0.05)	deleterious(0.752)	HMMPfam_7tm_1,superfamily_SSF81321
SYT9	143425	genome.wustl.edu	37	11	7334914	7334914	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175733.3	+1	validated	p.I262	1.000	200	0%	169	17.2%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
NLRP10	338322	genome.wustl.edu	37	11	7982818	7982818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176821.3	-1	reviewed	p.E114G	0.276	47	0%	36	25%	0	-	possibly_damaging(0.471)	deleterious(0.03)	deleterious(0.520)	NULL
RIC3	79608	genome.wustl.edu	37	11	8148242	8148242	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024557.3	-1	validated	p.E211*	1.000	310	0%	300	21.7%	0	-	-	-	-	NULL
TRIM66	9866	genome.wustl.edu	37	11	8667371	8667371	+	Missense_Mutation	SNP	G	G	A	rs141069498	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014818.1	-1	validated	p.R196C	1.000	150	0%	143	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00502
ENSG00000246273	0	genome.wustl.edu	37	11	9830567	9830567	+	RNA	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000498905	+1	known	NULL	0.000	109	0%	100	21%	1	0%	-	-	-	-
SBF2	81846	genome.wustl.edu	37	11	9875182	9875182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.S814Y	1.000	218	0%	214	36%	1	100%	possibly_damaging(0.476)	tolerated(0.18)	neutral(0.213)	NULL
ZBED5	58486	genome.wustl.edu	37	11	10875148	10875148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143667.1	-1	reviewed	p.R449C	1.000	70	0%	101	14.9%	3	33.3%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
SPON1	10418	genome.wustl.edu	37	11	14277324	14277324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006108.2	+1	validated	p.S408L	1.000	116	0%	92	39.1%	64	79.6%	unknown(0)	-	-	NULL
SPON1	10418	genome.wustl.edu	37	11	14284333	14284333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310358	+1	known	p.R690Q	1.000	73	0%	68	22.1%	75	61.3%	unknown(0)	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PDE3B	5140	genome.wustl.edu	37	11	14865419	14865419	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000922.3	+1	validated	p.S789	0.577	480	0%	400	33.3%	2	0%	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
MRGPRX1	259249	genome.wustl.edu	37	11	18955858	18955858	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147199.3	-1	provisional	p.W158*	0.001	375	0%	310	22.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SLC6A5	9152	genome.wustl.edu	37	11	20623066	20623066	+	Missense_Mutation	SNP	C	C	T	rs34243519	byCluster;byFrequency;by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004211.3	+1	reviewed	p.A132V	0.006	83	0%	66	24.2%	0	-	possibly_damaging(0.794)	tolerated(0.12)	deleterious(0.558)	NULL
NELL1	4745	genome.wustl.edu	37	11	21592440	21592440	+	Missense_Mutation	SNP	G	G	A	rs147192308	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006157.3	+1	reviewed	p.R704Q	1.000	230	0%	192	19.8%	9	0%	possibly_damaging(0.768)	tolerated(0.27)	neutral(0.319)	HMMPfam_VWC,HMMSmart_SM00214,HMMSmart_SM00215
ANO5	203859	genome.wustl.edu	37	11	22261188	22261188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213599.2	+1	reviewed	p.R279L	0.153	175	0%	158	20.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GAS2	2620	genome.wustl.edu	37	11	22747918	22747918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143830.1	+1	reviewed	p.F116L	1.000	482	0%	486	35.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
GAS2	2620	genome.wustl.edu	37	11	22770804	22770804	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143830.1	+1	reviewed	p.D204	1.000	173	0%	151	10.6%	1	0%	-	-	-	HMMPfam_GAS2,HMMSmart_SM00243
SLC5A12	159963	genome.wustl.edu	37	11	26694952	26694952	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178498.3	-1	validated	p.E568	0.871	166	0%	138	22.5%	0	-	-	-	-	NULL
KIF18A	81930	genome.wustl.edu	37	11	28080540	28080540	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031217.3	-1	validated	p.N627	0.000	263	0%	203	12.3%	0	-	-	-	-	NULL
KIF18A	81930	genome.wustl.edu	37	11	28104513	28104513	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031217.3	-1	validated	p.I384M	1.000	191	0%	243	21.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52540
HIPK3	10114	genome.wustl.edu	37	11	33362666	33362666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005734.3	+1	validated	p.R589I	1.000	100	0%	105	20%	7	28.5%	possibly_damaging(0.446)	tolerated(0.13)	neutral(0.398)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33596290	33596290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012194.1	+1	validated	p.E1134K	1.000	89	0%	79	12.7%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ELF5	2001	genome.wustl.edu	37	11	34504039	34504039	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198381.1	-1	reviewed	p.D148	0.473	247	0%	213	19.2%	0	-	-	-	-	NULL
PDHX	8050	genome.wustl.edu	37	11	35016492	35016492	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003477.2	+1	reviewed	p.E427*	1.000	186	0%	144	36.1%	20	30%	-	-	-	HMMPfam_2-oxoacid_dh,superfamily_SSF52777
PAMR1	25891	genome.wustl.edu	37	11	35492215	35492215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015430.2	-1	validated	p.V216I	0.027	145	0%	96	21.9%	16	6.2%	benign(0)	tolerated(0.9)	-	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
PAMR1	25891	genome.wustl.edu	37	11	35513654	35513654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015430.2	-1	validated	p.F106L	1.000	129	0%	126	23.8%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EGF
RAG1	5896	genome.wustl.edu	37	11	36597530	36597530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000448.2	+1	reviewed	p.M892I	1.000	182	0%	138	36.2%	1	0%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
RAG2	5897	genome.wustl.edu	37	11	36614523	36614523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000536.3	-1	reviewed	p.F399C	1.000	334	0%	289	30.4%	0	-	benign(0.043)	deleterious(0.01)	neutral(0.408)	HMMPfam_RAG2
TSPAN18	90139	genome.wustl.edu	37	11	44948254	44948254	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130783.4	+1	validated	p.F215	0.950	110	0%	83	36.1%	3	0%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
CHRM4	1132	genome.wustl.edu	37	11	46406905	46406905	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000741.2	-1	reviewed	p.T401	1.000	128	0%	117	18.8%	3	33.3%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
F2	2147	genome.wustl.edu	37	11	46744971	46744971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446804	+1	known	p.E4*	1.000	41	0%	35	22.9%	0	-	-	-	-	NULL
CKAP5	9793	genome.wustl.edu	37	11	46817268	46817268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.A509V	1.000	321	0%	271	29.5%	14	57.1%	benign(0.024)	deleterious(0.02)	neutral(0.384)	superfamily_ARM repeat
KBTBD4	55709	genome.wustl.edu	37	11	47594631	47594631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018095.4	-1	validated	p.A486T	1.000	56	0%	51	45.1%	39	41%	benign(0.195)	tolerated(0.54)	neutral(0.026)	superfamily_Galactose oxidase central domain
LOC120824	120824	genome.wustl.edu	37	11	49002528	49002528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_062300.6	-1	model	p.S146Y	0.006	31	0%	32	21.9%	0	-	-	-	-	NULL
FOLH1	2346	genome.wustl.edu	37	11	49227652	49227652	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004476.1	-1	reviewed	p.E64A	1.000	237	0%	235	38.3%	2	50%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
OR4C13	283092	genome.wustl.edu	37	11	49974554	49974554	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001955.2	+1	validated	p.G194*	0.054	359	0.3%	305	31.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4A5	81318	genome.wustl.edu	37	11	51411994	51411994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005272.3	-1	validated	p.M134I	0.993	211	0%	173	19.7%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4A15	81328	genome.wustl.edu	37	11	55135385	55135385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005275.1	+1	provisional	p.K9T	0.002	44	0%	49	34.7%	0	-	probably_damaging(0.988)	-	-	NULL
ENSG00000181943	0	genome.wustl.edu	37	11	55258794	55258794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314657	+1	known	p.G26S	0.091	79	0%	65	24.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5D13	390142	genome.wustl.edu	37	11	55541805	55541805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001967.1	+1	provisional	p.D298N	1.000	150	0%	136	16.9%	0	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	superfamily_SSF81321
OR5D18	219438	genome.wustl.edu	37	11	55587411	55587411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001952.1	+1	provisional	p.F102L	0.114	277	0%	204	20.6%	0	-	benign(0.085)	tolerated(0.46)	neutral(0.018)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D16	390144	genome.wustl.edu	37	11	55607088	55607088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005496.1	+1	provisional	p.L287F	0.170	155	0%	150	21.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56019871	56019871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004747.1	+1	provisional	p.L66F	0.000	308	0%	249	29.3%	0	-	probably_damaging(0.976)	tolerated(0.07)	deleterious(0.737)	superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043433	56043433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004745.1	+1	provisional	p.L107I	0.000	232	0%	205	33.7%	0	-	benign(0.002)	tolerated(0.43)	neutral(0.013)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000230416	0	genome.wustl.edu	37	11	56216349	56216349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415874	+1	known	p.V69A	0.566	97	0%	86	17.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M8	219484	genome.wustl.edu	37	11	56258601	56258601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005282.1	-1	provisional	p.E82D	0.000	75	0%	66	43.9%	0	-	possibly_damaging(0.604)	tolerated(0.1)	deleterious(0.496)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4D6	219983	genome.wustl.edu	37	11	59224931	59224931	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004708.1	+1	provisional	p.F166	0.483	464	0%	364	33%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4D10	390197	genome.wustl.edu	37	11	59245746	59245746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004705.1	+1	provisional	p.L282F	0.070	294	0%	214	25.2%	0	-	benign(0.392)	deleterious(0.04)	deleterious(0.474)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SYT7	9066	genome.wustl.edu	37	11	61295622	61295622	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004200.2	-1	validated	p.E129	0.999	45	0%	44	20.5%	3	33.3%	-	-	-	superfamily_C2_CaLB
GPHA2	170589	genome.wustl.edu	37	11	64702546	64702546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130769.3	-1	validated	p.R69W	0.992	34	0%	32	15.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
EHBP1L1	254102	genome.wustl.edu	37	11	65349969	65349969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099409.1	+1	validated	p.E609G	0.004	43	0%	44	20.5%	4	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MAP3K11	4296	genome.wustl.edu	37	11	65375136	65375136	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002419.3	-1	reviewed	p.F407	1.000	58	0%	44	20.5%	46	15.2%	-	-	-	NULL
MAP3K11	4296	genome.wustl.edu	37	11	65380717	65380717	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002419.3	-1	reviewed	p.L171	1.000	25	0%	14	50%	117	38.4%	-	-	-	HMMSmart_TyrKc,superfamily_Kinase_like,HMMPfam_Pkinase
NPAS4	266743	genome.wustl.edu	37	11	66190641	66190641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178864.3	+1	validated	p.S249*	1.000	132	0%	99	24.2%	0	-	-	-	-	HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785
RBM14	10432	genome.wustl.edu	37	11	66394094	66394094	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006328.3	+1	validated	p.Y655*	1.000	67	0%	58	31%	24	33.3%	-	-	-	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66483313	66483313	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.S99	0.004	142	0%	144	20.8%	3	66.6%	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
KDM2A	22992	genome.wustl.edu	37	11	66995534	66995534	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012308.2	+1	reviewed	p.F328	1.000	253	0%	239	25.1%	20	45%	-	-	-	superfamily_Clavaminate synthase-like
CARNS1	57571	genome.wustl.edu	37	11	67186991	67186991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020811.1	+1	validated	p.G173W	0.838	42	2.4%	36	19.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PITPNM1	9600	genome.wustl.edu	37	11	67267237	67267237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004910.2	-1	validated	p.F376L	0.998	82	0%	69	11.6%	57	31.5%	benign(0.001)	tolerated(1)	-	NULL
LAMTOR1	55004	genome.wustl.edu	37	11	71809401	71809401	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017907.1	-1	provisional	p.P109	0.308	64	0%	42	26.2%	432	48.3%	-	-	-	NULL
PPME1	51400	genome.wustl.edu	37	11	73933406	73933406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016147.1	+1	provisional	p.R113Q	1.000	593	0%	570	10.7%	49	10.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
POLD3	10714	genome.wustl.edu	37	11	74329805	74329805	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006591.1	+1	validated	p.E206*	1.000	167	0%	178	20.8%	14	7.1%	-	-	-	HMMPfam_CDC27
RNF169	254225	genome.wustl.edu	37	11	74521238	74521238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098638.1	+1	validated	p.E196*	1.000	133	0%	137	28.5%	0	-	-	-	-	NULL
PRKRIR	5612	genome.wustl.edu	37	11	76076939	76076939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004705.2	-1	provisional	p.R56Q	1.000	409	0.2%	391	18.2%	3	0%	benign(0.031)	deleterious(0.04)	neutral(0.350)	HMMPfam_THAP,HMMSmart_SM00692
ODZ4	26011	genome.wustl.edu	37	11	78412977	78412977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.R1561W	1.000	143	0%	100	31%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NHL,superfamily_SSF101898,superfamily_TolB_C
C11orf82	220042	genome.wustl.edu	37	11	82643419	82643419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145018.3	+1	validated	p.P347S	0.001	73	0%	60	26.7%	5	0%	possibly_damaging(0.477)	tolerated(0.11)	neutral(0.429)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85448665	85448665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032943.3	-1	reviewed	p.D142Y	0.047	386	0.3%	340	26.5%	1	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
PICALM	8301	genome.wustl.edu	37	11	85742628	85742628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007166.2	-1	validated	p.M52I	1.000	204	0%	201	10.9%	14	7.1%	benign(0.022)	tolerated(0.07)	neutral(0.320)	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
TRIM77P	390231	genome.wustl.edu	37	11	89447493	89447493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343107.1	+1	model	p.R214I	0.000	172	0%	181	23.8%	0	-	-	-	-	NULL
TRIM64B	642446	genome.wustl.edu	37	11	89603911	89603911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329862	-1	known	p.L410M	0.997	1369	0%	1387	14.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY
CHORDC1	26973	genome.wustl.edu	37	11	89947213	89947213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012124.2	-1	validated	p.K101T	0.999	424	0%	338	17.5%	8	12.5%	probably_damaging(0.981)	tolerated(0.06)	deleterious(0.748)	NULL
MED17	9440	genome.wustl.edu	37	11	93529633	93529633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004268.4	+1	reviewed	p.F357C	0.028	416	0.2%	351	12%	2	0%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_DUF2364
MRE11A	4361	genome.wustl.edu	37	11	94194110	94194110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005591.3	-1	reviewed	p.A440T	0.995	356	0.3%	338	16.9%	1	0%	benign(0.066)	tolerated(0.17)	neutral(0.064)	HMMPfam_Mre11_DNA_bind
AMOTL1	154810	genome.wustl.edu	37	11	94532846	94532846	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130847.2	+1	reviewed	p.E164*	1.000	66	0%	59	20.3%	17	29.4%	-	-	-	NULL
SESN3	143686	genome.wustl.edu	37	11	94906474	94906474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144665.2	-1	provisional	p.R475Q	0.998	135	0%	112	22.3%	7	57.1%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_PA26
MTMR2	8898	genome.wustl.edu	37	11	95621404	95621404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016156.5	-1	reviewed	p.E34D	1.000	200	0%	196	16.3%	3	0%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
MAML2	84441	genome.wustl.edu	37	11	95826594	95826594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032427.1	-1	validated	p.L201I	1.000	143	0%	172	21.5%	0	-	unknown(0)	tolerated(0.28)	-	NULL
CNTN5	53942	genome.wustl.edu	37	11	100064359	100064359	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014361.2	+1	reviewed	p.F616	0.900	158	0%	143	16.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
C11orf70	85016	genome.wustl.edu	37	11	101951950	101951950	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032930.1	+1	predicted	p.R167*	1.000	217	0%	211	21.8%	2	0%	-	-	-	NULL
LOC100289609	100289609	genome.wustl.edu	37	11	102668127	102668127	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343120.1	+1	model	p.E44*	1.000	349	0%	275	22.5%	0	-	possibly_damaging(0.698)	tolerated(0.07)	deleterious(0.570)	NULL
MMP12	4321	genome.wustl.edu	37	11	102742358	102742358	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326227	-1	known	p.F197	1.000	146	0%	138	28.3%	6	0%	-	-	-	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
DYNC2H1	79659	genome.wustl.edu	37	11	103349849	103349849	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.D4271	0.661	216	0%	186	17.7%	20	45%	-	-	-	HMMPfam_Dynein_heavy
CASP1	834	genome.wustl.edu	37	11	104901197	104901197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033292.2	-1	reviewed	p.R163C	0.997	160	0%	123	16.3%	15	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
AASDHPPT	60496	genome.wustl.edu	37	11	105961323	105961323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015423.2	+1	reviewed	p.R150I	1.000	192	0%	201	21.9%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ACPS,superfamily_4-PPT_transf
SLC35F2	54733	genome.wustl.edu	37	11	107729403	107729403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017515.4	-1	validated	p.K31Q	0.000	9	0.000	8	0.750	1	100%	benign(0.004)	tolerated(0.18)	neutral(0.056)	HMMPfam_DUF914
ATM	472	genome.wustl.edu	37	11	108206668	108206668	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.L2750	0.527	196	0%	139	12.2%	18	11.1%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108216508	108216508	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.V2819	0.947	153	0%	179	21.8%	0	-	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
EXPH5	23086	genome.wustl.edu	37	11	108380490	108380490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015065.2	-1	validated	p.F1915C	1.000	119	0%	136	34.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110454414	110454414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020809.2	-1	validated	p.L488R	1.000	193	0%	169	33.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ZW10	9183	genome.wustl.edu	37	11	113628402	113628402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004724.2	-1	reviewed	p.L303F	1.000	124	0%	111	27%	1	100%	benign(0.041)	tolerated(0.17)	neutral(0.061)	HMMPfam_Zw10
APOA1	335	genome.wustl.edu	37	11	116707098	116707098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000039.1	-1	reviewed	p.V77A	0.661	52	0%	36	16.7%	2	50%	benign(0.028)	deleterious(0.01)	neutral(0.407)	HMMPfam_Apolipoprotein,superfamily_SSF47162
CD3D	915	genome.wustl.edu	37	11	118209930	118209930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000732.4	-1	reviewed	p.R155*	0.369	98	0%	80	22.5%	58	0%	-	-	-	HMMPfam_ITAM,HMMSmart_SM00077
DPAGT1	1798	genome.wustl.edu	37	11	118971049	118971049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001382.3	-1	reviewed	p.G189E	1.000	121	0%	89	32.6%	54	31.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_4
RNF26	79102	genome.wustl.edu	37	11	119206936	119206936	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032015.3	+1	reviewed	p.W368*	1.000	102	0%	65	36.9%	45	46.6%	-	-	-	superfamily_RING/U-box
GRIK4	2900	genome.wustl.edu	37	11	120690496	120690496	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014619.2	+1	reviewed	p.F126	0.995	173	0.6%	142	31.7%	2	50%	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
SORL1	6653	genome.wustl.edu	37	11	121384925	121384925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003105.4	+1	reviewed	p.R369H	1.000	152	0%	119	17.6%	14	35.7%	benign(0.339)	deleterious(0.05)	neutral(0.452)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
C11orf63	79864	genome.wustl.edu	37	11	122805249	122805249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024806.2	+1	validated	p.R367Q	0.000	109	0%	87	28.7%	8	12.5%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
OR10G9	219870	genome.wustl.edu	37	11	123893914	123893914	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001953.1	+1	provisional	p.S65	0.341	339	0%	238	21.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8B4	283162	genome.wustl.edu	37	11	124294410	124294410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005196.1	-1	provisional	p.D120Y	1.000	124	0.8%	102	16.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SIAE	54414	genome.wustl.edu	37	11	124519638	124519638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170601.3	-1	validated	p.G200E	1.000	146	0%	102	25.5%	28	46.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF303
ROBO4	54538	genome.wustl.edu	37	11	124761394	124761394	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019055.5	-1	validated	p.G583	1.000	63	0%	75	12%	1	0%	-	-	-	NULL
CCDC15	80071	genome.wustl.edu	37	11	124857968	124857968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025004.2	+1	validated	p.L616F	0.001	249	0%	293	31.4%	0	-	probably_damaging(0.981)	tolerated(0.1)	deleterious(0.712)	NULL
FEZ1	9638	genome.wustl.edu	37	11	125351486	125351486	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005103.3	-1	reviewed	p.E119*	0.966	210	0%	175	22.9%	1	0%	-	-	-	HMMPfam_FEZ
PATE1	160065	genome.wustl.edu	37	11	125617642	125617642	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138294.2	+1	validated	p.E58*	0.145	111	0%	115	13.9%	0	-	-	-	-	NULL
SRPR	6734	genome.wustl.edu	37	11	126135871	126135871	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003139.3	-1	reviewed	p.R346	0.693	176	0%	141	27.7%	395	23.2%	-	-	-	superfamily_SRP54
SLC6A12	6539	genome.wustl.edu	37	12	306593	306593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122847.1	-1	validated	p.G342D	1.000	91	0%	79	16.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
WNK1	65125	genome.wustl.edu	37	12	922921	922921	+	Silent	SNP	A	A	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.V291	0.998	266	0%	264	20.8%	1	100%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
CACNA2D4	93589	genome.wustl.edu	37	12	1988975	1988975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172364.4	-1	reviewed	p.E520K	0.999	88	0%	65	24.6%	0	-	possibly_damaging(0.837)	tolerated(0.19)	neutral(0.369)	HMMPfam_Cache_1
CACNA1C	775	genome.wustl.edu	37	12	2706648	2706648	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.E967*	1.000	186	0%	147	27.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
C12orf5	57103	genome.wustl.edu	37	12	4459007	4459007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020375.2	+1	reviewed	p.R72I	0.985	213	0%	241	27.4%	7	71.4%	benign(0.001)	deleterious(0.05)	neutral(0.345)	HMMPfam_PGAM,superfamily_SSF53254
C12orf4	57102	genome.wustl.edu	37	12	4626310	4626310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020374.2	-1	predicted	p.R360Q	0.030	238	0.4%	223	27.8%	1	100%	benign(0.003)	tolerated(0.71)	neutral(0.002)	HMMPfam_DUF2362
DYRK4	8798	genome.wustl.edu	37	12	4702297	4702297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003845.1	+1	provisional	p.T83M	0.773	106	0%	72	11.1%	2	0%	benign(0.012)	tolerated(0.24)	neutral(0.038)	NULL
AKAP3	10566	genome.wustl.edu	37	12	4736979	4736979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006422.2	-1	reviewed	p.F363L	0.577	226	0%	174	27%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP3	10566	genome.wustl.edu	37	12	4737281	4737281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006422.2	-1	reviewed	p.R263W	0.007	95	0%	90	33.3%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_AKAP_110,HMMSmart_SM00807
CD4	920	genome.wustl.edu	37	12	6925289	6925289	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000616.3	+1	validated	p.L225	0.000	125	0%	105	18.1%	18	0%	-	-	-	HMMSmart_SM00409,HMMPfam_CD4-extracel,superfamily_Immunoglobulin
C1S	716	genome.wustl.edu	37	12	7174372	7174372	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001734.3	+1	reviewed	p.S339	0.860	340	0.3%	270	32.2%	74	17.5%	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
FOXJ2	55810	genome.wustl.edu	37	12	8200558	8200560	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018416.2	+1	validated	p.Q303in_frame_del	0.958:0.974:0.973	-	-	-	-	-	-	-	-	-	NULL
CD69	969	genome.wustl.edu	37	12	9907102	9907102	+	RNA	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026671.1	-1	reviewed	NULL	0.005	81	0%	101	24.8%	0	-	-	-	-	-
CLEC12A	160364	genome.wustl.edu	37	12	10132004	10132004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138337.5	+1	reviewed	p.R87I	0.022	147	0%	169	32%	1	0%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
CSDA	8531	genome.wustl.edu	37	12	10871688	10871688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003651.4	-1	validated	p.F106C	1.000	207	0%	160	28.7%	58	48.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK
TAS2R8	50836	genome.wustl.edu	37	12	10959222	10959222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023918.1	-1	reviewed	p.L120I	0.925	188	0%	177	33.3%	0	-	probably_damaging(0.973)	deleterious(0.05)	deleterious(0.760)	HMMPfam_TAS2R,superfamily_SSF81321
DUSP16	80824	genome.wustl.edu	37	12	12630142	12630142	+	Silent	SNP	C	C	T	rs143261305	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030640.2	-1	reviewed	p.S541	0.835	76	0%	81	35.8%	28	39.2%	-	-	-	NULL
GPRC5D	55507	genome.wustl.edu	37	12	13102964	13102964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018654.1	-1	reviewed	p.R119W	1.000	143	0%	115	18.3%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
EMP1	2012	genome.wustl.edu	37	12	13367619	13367619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001423.2	+1	validated	p.K156N	1.000	141	0%	135	20.7%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GRIN2B	2904	genome.wustl.edu	37	12	13764735	13764735	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.I568	0.915	124	0%	121	10.7%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
C12orf69	440087	genome.wustl.edu	37	12	14959262	14959262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013698.2	-1	validated	p.S118L	0.984	258	0%	240	34.2%	0	-	possibly_damaging(0.621)	deleterious(0)	deleterious(0.661)	NULL
PIK3C2G	5288	genome.wustl.edu	37	12	18716366	18716366	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004570.4	+1	reviewed	p.S1238*	0.982	184	0%	163	12.9%	0	-	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CMAS	55907	genome.wustl.edu	37	12	22214321	22214321	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018686.3	+1	reviewed	p.E299*	1.000	161	0%	136	18.4%	2	0%	-	-	-	HMMPfam_CTP_transf_3,superfamily_HAD-like
KIAA0528	9847	genome.wustl.edu	37	12	22623827	22623827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	p.A793T	1.000	448	0%	483	21.5%	1	100%	possibly_damaging(0.496)	tolerated(0.11)	neutral(0.437)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22677465	22677465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	p.R181Q	1.000	291	0%	266	29.3%	14	57.1%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	NULL
LRMP	4033	genome.wustl.edu	37	12	25236422	25236422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006152.2	+1	reviewed	p.N104H	0.003	236	0%	203	38.4%	0	-	benign(0.133)	deleterious(0.02)	neutral(0.394)	HMMPfam_MRVI1
ITPR2	3709	genome.wustl.edu	37	12	26580883	26580883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.G2303D	1.000	216	0%	223	28.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26714717	26714717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.R1600K	0.966	65	0%	54	25.9%	2	0%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26781066	26781066	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.R988	0.999	187	0%	156	28.8%	5	40%	-	-	-	NULL
C12orf70	341346	genome.wustl.edu	37	12	27647270	27647270	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145010.1	+1	validated	p.K213T	0.992	262	0%	250	19.2%	0	-	benign(0.224)	deleterious(0)	neutral(0.467)	NULL
TMTC1	83857	genome.wustl.edu	37	12	29669375	29669375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175861.2	-1	provisional	p.K630N	0.978	251	0%	185	35.7%	5	60%	benign(0.019)	tolerated(0.16)	neutral(0.060)	superfamily_Protein prenylyltransferase,superfamily_TPR-like
DDX11	1663	genome.wustl.edu	37	12	31249282	31249282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152438.1	+1	reviewed	p.R497Q	0.999	364	0%	363	20.4%	16	37.5%	benign(0.026)	tolerated(0.09)	neutral(0.297)	NULL
DENND5B	160518	genome.wustl.edu	37	12	31579260	31579260	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144973.3	-1	validated	p.F735	1.000	257	0%	276	11.6%	0	-	-	-	-	NULL
FGD4	121512	genome.wustl.edu	37	12	32793449	32793449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139241.2	+1	reviewed	p.K761N	0.000	46	0%	31	32.3%	2	50%	benign(0.186)	tolerated(0.09)	neutral(0.314)	NULL
KIF21A	55605	genome.wustl.edu	37	12	39752122	39752122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017641.3	-1	validated	p.T358M	1.000	416	0%	367	31.9%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRK2	120892	genome.wustl.edu	37	12	40696648	40696648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.F1185C	1.000	175	0%	187	19.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
PUS7L	83448	genome.wustl.edu	37	12	44124467	44124467	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098614.1	-1	validated	p.P606	0.162	234	0%	226	13.7%	3	33.3%	-	-	-	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
NELL2	4753	genome.wustl.edu	37	12	44917170	44917170	+	Missense_Mutation	SNP	C	C	A	rs34214960		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145107.1	-1	reviewed	p.K684N	1.000	160	0%	104	34.6%	4	0%	possibly_damaging(0.837)	tolerated(0.23)	neutral(0.361)	HMMPfam_EGF_CA,superfamily_SSF57196
SCAF11	9169	genome.wustl.edu	37	12	46320332	46320332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.R1051I	1.000	77	0%	88	18.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46321008	46321008	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.E826*	1.000	238	0%	281	34.5%	0	-	-	-	-	NULL
SCAF11	9169	genome.wustl.edu	37	12	46321933	46321933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.E517D	0.092	142	0%	160	25%	2	50%	benign(0.026)	tolerated(0.64)	neutral(0.004)	NULL
RAPGEF3	10411	genome.wustl.edu	37	12	48134566	48134566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098531.2	-1	validated	p.R697Q	0.979	37	0%	33	12.1%	8	0%	probably_damaging(0.98)	tolerated(0.34)	neutral(0.447)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
KANSL2	54934	genome.wustl.edu	37	12	49048753	49048753	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017822.3	-1	validated	p.E440*	1.000	253	0%	238	32.4%	16	25%	-	-	-	NULL
ADCY6	112	genome.wustl.edu	37	12	49170270	49170270	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015270.3	-1	reviewed	p.F492	0.958	34	0%	33	12.1%	83	15.6%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1
ARF3	377	genome.wustl.edu	37	12	49334753	49334753	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001659.2	-1	reviewed	p.I42	0.669	168	0%	144	18.8%	260	20.7%	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
FMNL3	91010	genome.wustl.edu	37	12	50059986	50059986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175736.4	-1	validated	p.R72Q	1.000	312	0%	278	33.1%	1	0%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMPfam_Drf_GBD
NCKAP5L	57701	genome.wustl.edu	37	12	50196893	50196893	+	Missense_Mutation	SNP	C	C	T	rs184937545	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037806.3	-1	validated	p.R60H	1.000	88	0%	60	13.3%	12	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RACGAP1	29127	genome.wustl.edu	37	12	50393510	50393510	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126103.1	-1	validated	p.E213*	1.000	102	0%	73	35.6%	9	11.1%	-	-	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50745280	50745280	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145475.1	-1	provisional	p.E1779*	0.000	40	2.5%	56	26.8%	0	-	-	-	-	NULL
SCN8A	6334	genome.wustl.edu	37	12	52168095	52168095	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.F1256	1.000	390	0%	291	33%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KRT72	140807	genome.wustl.edu	37	12	52981453	52981453	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080747.2	-1	reviewed	p.I424	1.000	130	0%	75	32%	0	-	-	-	-	HMMPfam_Filament,PatternScan_IF
KRT73	319101	genome.wustl.edu	37	12	53004521	53004521	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175068.2	-1	reviewed	p.L403	1.000	96	0%	46	34.8%	0	-	-	-	-	HMMPfam_Filament
KRT2	3849	genome.wustl.edu	37	12	53040562	53040562	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000423.2	-1	reviewed	p.I477	0.178	87	0%	62	12.9%	1	0%	-	-	-	HMMPfam_Filament,PatternScan_IF
TARBP2	6895	genome.wustl.edu	37	12	53898557	53898557	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134323.1	+1	reviewed	p.E191*	1.000	148	0%	129	27.9%	24	8.3%	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
OR6C65	403282	genome.wustl.edu	37	12	55794646	55794646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005518.1	+1	provisional	p.L112I	0.296	125	0%	177	19.8%	0	-	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
PHC1P1	653441	genome.wustl.edu	37	12	55807201	55807201	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326184	-1	known	p.P440	0.850	358	0%	274	14.6%	57	0%	-	-	-	NULL
OR2AP1	121129	genome.wustl.edu	37	12	55968375	55968375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000321688	+1	known	p.F59L	0.997	17	0%	23	17.4%	0	-	possibly_damaging(0.728)	deleterious(0.01)	deleterious(0.671)	HMMPfam_7tm_1,superfamily_SSF81321
HSD17B6	8630	genome.wustl.edu	37	12	57181011	57181011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003725.2	+1	reviewed	p.R280Q	0.943	138	0%	140	11.4%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_NAD(P)-bd
KIF5A	3798	genome.wustl.edu	37	12	57957931	57957931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.R111Q	1.000	79	0%	62	38.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
METTL1	4234	genome.wustl.edu	37	12	58162873	58162873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005371.5	-1	reviewed	p.R246H	1.000	165	0%	115	30.4%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Methyltransf_4
MON2	23041	genome.wustl.edu	37	12	62902072	62902072	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	p.E266*	1.000	186	0%	171	30.4%	2	0%	-	-	-	NULL
MON2	23041	genome.wustl.edu	37	12	62902248	62902248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	p.F324L	1.000	115	0%	90	22.2%	2	50%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
MON2	23041	genome.wustl.edu	37	12	62954259	62954259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000261188	+1	known	p.L8R	0.228	69	0%	95	17.9%	0	-	-	-	-	NULL
GRIP1	23426	genome.wustl.edu	37	12	66747253	66747253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021150.3	-1	reviewed	p.R983C	1.000	158	0%	165	30.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
GRIP1	23426	genome.wustl.edu	37	12	66856769	66856769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021150.3	-1	reviewed	p.D326G	1.000	234	0%	215	14.9%	10	10%	benign(0.003)	tolerated(0.15)	neutral(0.241)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
CAND1	55832	genome.wustl.edu	37	12	67691386	67691386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018448.3	+1	validated	p.T231A	1.000	171	0%	199	22.6%	5	0%	benign(0.253)	tolerated(0.15)	neutral(0.267)	superfamily_ARM repeat
SLC35E3	55508	genome.wustl.edu	37	12	69145849	69145849	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018656.2	+1	validated	p.S184*	1.000	305	0%	265	15.5%	23	4.3%	-	-	-	HMMPfam_TPT
BEST3	144453	genome.wustl.edu	37	12	70070720	70070720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032735.2	-1	validated	p.F281L	1.000	83	0%	71	9.9%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Bestrophin
PTPRB	5787	genome.wustl.edu	37	12	71003573	71003573	+	Silent	SNP	A	A	G	rs115721061	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002837.3	-1	reviewed	p.L8	0.002	47	0%	26	19.2%	0	-	-	-	-	NULL
PTPRR	5801	genome.wustl.edu	37	12	71139844	71139844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002849.2	-1	reviewed	p.R254I	0.378	244	0%	255	23.1%	1	0%	possibly_damaging(0.778)	deleterious(0)	deleterious(0.736)	NULL
KCNC2	3747	genome.wustl.edu	37	12	75444577	75444577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139137.2	-1	reviewed	p.A403V	1.000	84	0%	69	24.6%	0	-	possibly_damaging(0.694)	deleterious(0.03)	deleterious(0.613)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ZDHHC17	23390	genome.wustl.edu	37	12	77216188	77216188	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015336.2	+1	validated	p.G258	0.855	154	0%	181	21%	2	50%	-	-	-	superfamily_Ankyrin repeat
PAWR	5074	genome.wustl.edu	37	12	79990394	79990394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002583.2	-1	reviewed	p.R243Q	1.000	255	0%	251	12.4%	14	7.1%	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81833803	81833803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.S198Y	1.000	176	0%	176	35.2%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85255421	85255421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182767.4	-1	validated	p.S728Y	1.000	127	0%	118	22.9%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85264428	85264428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182767.4	-1	validated	p.A442S	1.000	93	0%	90	11.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SNF
SLC6A15	55117	genome.wustl.edu	37	12	85279839	85279839	+	Missense_Mutation	SNP	G	G	T	rs143012212	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182767.4	-1	validated	p.L100I	1.000	99	0%	104	12.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SNF
TSPAN19	144448	genome.wustl.edu	37	12	85411337	85411337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100917.1	-1	validated	p.K164N	0.996	175	0%	182	33.5%	0	-	possibly_damaging(0.473)	tolerated(0.47)	neutral(0.167)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
ALX1	8092	genome.wustl.edu	37	12	85677526	85677526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006982.2	+1	reviewed	p.H135Y	1.000	152	0%	115	14.8%	0	-	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
MGAT4C	25834	genome.wustl.edu	37	12	86373742	86373742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013244.3	-1	validated	p.F254L	1.000	127	0%	100	21%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Glyco_transf_54
C12orf50	160419	genome.wustl.edu	37	12	88379774	88379774	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152589.1	-1	predicted	p.R327*	0.997	350	0.3%	299	21.7%	0	-	-	-	-	NULL
C12orf50	160419	genome.wustl.edu	37	12	88380161	88380161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152589.1	-1	predicted	p.F284V	1.000	360	0.3%	333	30.9%	0	-	benign(0.237)	deleterious(0)	neutral(0.468)	NULL
CEP290	80184	genome.wustl.edu	37	12	88465129	88465129	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.E1985*	1.000	359	0%	388	32%	0	-	-	-	-	NULL
C12orf12	196477	genome.wustl.edu	37	12	91347450	91347450	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152638.2	-1	predicted	p.F357Y	0.012	381	0%	297	33%	0	-	possibly_damaging(0.737)	tolerated(0.44)	neutral(0.282)	NULL
KERA	11081	genome.wustl.edu	37	12	91449875	91449875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007035.3	-1	reviewed	p.G62C	1.000	209	0%	193	34.2%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
KERA	11081	genome.wustl.edu	37	12	91450012	91450012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007035.3	-1	reviewed	p.D16G	0.007	105	0%	96	17.7%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
PLXNC1	10154	genome.wustl.edu	37	12	94603399	94603399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005761.1	+1	provisional	p.E491D	0.000	306	0%	262	14.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold
VEZT	55591	genome.wustl.edu	37	12	95681599	95681599	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017599.3	+1	validated	p.V496	1.000	126	0%	111	12.6%	12	8.3%	-	-	-	NULL
LTA4H	4048	genome.wustl.edu	37	12	96400166	96400166	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000895.1	-1	provisional	p.S486A	0.007	306	0%	318	20.8%	36	27.7%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_Leuk-A4-hydro_C,superfamily_ARM repeat
LOC121456	121456	genome.wustl.edu	37	12	98850440	98850440	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016411.2	-1	model	NULL	1.000	43	0%	32	34.4%	0	-	-	-	-	-
SLC25A3	5250	genome.wustl.edu	37	12	98989504	98989504	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002635.3	+1	reviewed	e2-1	1.000	367	0%	298	21.1%	3	33.3%	-	-	-	-
IKBIP	121457	genome.wustl.edu	37	12	99007832	99007832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201612.1	-1	provisional	p.S195Y	0.972	77	0%	122	32.8%	0	-	possibly_damaging(0.887)	deleterious(0.02)	deleterious(0.730)	NULL
ANKS1B	56899	genome.wustl.edu	37	12	99192773	99192773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152788.3	-1	validated	p.S1069Y	1.000	230	0%	295	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SLC5A8	160728	genome.wustl.edu	37	12	101560318	101560318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145913.3	-1	validated	p.E494*	0.998	321	0%	253	12.6%	0	-	-	-	-	NULL
UTP20	27340	genome.wustl.edu	37	12	101713384	101713384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.E934K	1.000	175	0%	200	15.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DRIM,superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101745933	101745933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.V1662A	1.000	362	0%	307	29%	8	25%	benign(0.164)	tolerated(0.28)	neutral(0.046)	superfamily_ARM repeat
GNPTAB	79158	genome.wustl.edu	37	12	102158935	102158935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024312.4	-1	reviewed	p.R587Q	1.000	404	0%	341	30.5%	25	28%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STAB2	55576	genome.wustl.edu	37	12	104084282	104084282	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017564.9	+1	reviewed	p.Q1088P	1.000	253	0.4%	221	27.1%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1
NUAK1	9891	genome.wustl.edu	37	12	106464614	106464614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014840.2	-1	validated	p.D257A	1.000	159	0%	137	18.2%	2	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SELPLG	6404	genome.wustl.edu	37	12	109017364	109017364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003006.3	-1	reviewed	p.E230D	0.001	716	0.1%	600	21.5%	108	8.3%	unknown(0)	tolerated(0.28)	-	NULL
SSH1	54434	genome.wustl.edu	37	12	109194558	109194558	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018984.3	-1	validated	p.A382	0.059	305	0%	276	27.9%	0	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
ACACB	32	genome.wustl.edu	37	12	109577476	109577476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.R89I	0.000	56	0%	76	34.2%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
MYO1H	283446	genome.wustl.edu	37	12	109848566	109848566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101421.3	+1	provisional	p.S462Y	1.000	265	0%	240	30.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATP2A2	488	genome.wustl.edu	37	12	110765494	110765494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170665.3	+1	reviewed	p.F256C	1.000	127	0%	117	31.6%	93	51.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
OAS2	4939	genome.wustl.edu	37	12	113425107	113425107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016817.2	+1	reviewed	p.A148T	0.503	111	0%	88	22.7%	5	0%	benign(0.049)	tolerated(0.12)	neutral(0.264)	superfamily_Nucleotidyltransferase
DTX1	1840	genome.wustl.edu	37	12	113531866	113531866	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004416.2	+1	reviewed	p.R397*	0.909	53	0%	47	36.2%	9	0%	-	-	-	superfamily_SSF57850
LHX5	64211	genome.wustl.edu	37	12	113901319	113901319	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022363.2	-1	reviewed	p.F295	1.000	35	0%	26	26.9%	0	-	-	-	-	NULL
ENSG00000247019	0	genome.wustl.edu	37	12	116972384	116972384	+	RNA	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502085	-1	novel	NULL	1.000	103	0%	76	31.6%	3	33.3%	-	-	-	-
CIT	11113	genome.wustl.edu	37	12	120260768	120260768	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.K323Q	1.000	114	0%	119	25.2%	2	0%	possibly_damaging(0.925)	tolerated(0.07)	deleterious(0.693)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
POP5	51367	genome.wustl.edu	37	12	121017724	121017724	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015918.3	-1	validated	p.R56*	1.000	155	0%	118	15.3%	51	11.7%	-	-	-	HMMPfam_RNase_P_Rpp14
SPPL3	121665	genome.wustl.edu	37	12	121221532	121221532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139015.3	-1	validated	p.F112V	1.000	220	0%	278	12.6%	47	10.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
RSRC2	65117	genome.wustl.edu	37	12	122990215	122990215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023012.4	-1	validated	p.E388D	0.999	252	0%	245	30.2%	48	43.7%	benign(0.029)	tolerated(0.21)	neutral(0.045)	NULL
PITPNM2	57605	genome.wustl.edu	37	12	123482002	123482002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020845.2	-1	validated	p.D448N	0.999	47	0%	39	38.5%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124317763	124317763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.E1432K	0.996	137	0%	157	35%	1	100%	possibly_damaging(0.941)	deleterious(0.02)	deleterious(0.770)	HMMPfam_DHC_N2
DNAH10	196385	genome.wustl.edu	37	12	124323139	124323139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.R1562I	0.994	144	0.7%	122	15.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH10	196385	genome.wustl.edu	37	12	124325905	124325905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.G1607S	0.952	232	0%	199	21.6%	1	0%	benign(0.001)	tolerated(0.53)	neutral(0.007)	HMMPfam_DHC_N2
CCDC92	80212	genome.wustl.edu	37	12	124427302	124427302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025140.1	-1	provisional	p.S71L	0.962	285	0%	270	23.3%	17	64.7%	benign(0.167)	tolerated(0.41)	neutral(0.030)	NULL
EP400	57634	genome.wustl.edu	37	12	132498056	132498056	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.I1210	0.339	66	0%	63	42.9%	13	53.8%	-	-	-	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
DDX51	317781	genome.wustl.edu	37	12	132626725	132626725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175066.3	-1	validated	p.S276L	0.000	31	0%	30	40%	16	37.5%	benign(0.124)	tolerated(0.25)	neutral(0.047)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
POLE	5426	genome.wustl.edu	37	12	133219475	133219475	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.F1553	0.992	94	0%	105	26.7%	10	50%	-	-	-	HMMPfam_DUF1744
POLE	5426	genome.wustl.edu	37	12	133234008	133234008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.D1129G	1.000	64	0%	61	32.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B,superfamily_SSF56672
POLE	5426	genome.wustl.edu	37	12	133253184	133253184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.P286R	1.000	117	0%	114	36%	11	63.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
ZNF268	10795	genome.wustl.edu	37	12	133780671	133780671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003415.2	+1	validated	p.R800I	1.000	150	0%	96	17.7%	5	60%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GJA3	2700	genome.wustl.edu	37	13	20717131	20717131	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021954.3	-1	reviewed	p.I99	0.446	168	0%	95	38.9%	0	-	-	-	-	HMMPfam_Connexin
SACS	26278	genome.wustl.edu	37	13	23904986	23904986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.E4343D	1.000	62	0%	82	14.6%	0	-	benign(0)	tolerated(1)	-	superfamily_Chaperone J-domain
SACS	26278	genome.wustl.edu	37	13	23907634	23907634	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.E3461*	1.000	209	0%	169	14.2%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23909492	23909492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.K2841N	1.000	86	0%	126	33.3%	0	-	possibly_damaging(0.914)	tolerated(0.23)	neutral(0.407)	NULL
SACS	26278	genome.wustl.edu	37	13	23928797	23928797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.E652*	0.938	57	0%	63	14.3%	3	66.6%	-	-	-	NULL
PABPC3	5042	genome.wustl.edu	37	13	25670924	25670924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030979.2	+1	validated	p.K196N	1.000	308	0%	306	17.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
ATP8A2	51761	genome.wustl.edu	37	13	26125619	26125619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.K345N	0.001	233	0%	203	18.7%	0	-	benign(0.119)	tolerated(0.24)	neutral(0.047)	NULL
FLT1	2321	genome.wustl.edu	37	13	28893672	28893672	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002019.4	-1	reviewed	e24-1	1.000	115	0%	109	31.2%	0	-	-	-	-	-
FLT1	2321	genome.wustl.edu	37	13	29001303	29001303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002019.4	-1	reviewed	p.E477K	0.678	234	0.4%	195	17.9%	6	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00409,superfamily_Immunoglobulin
MTUS2	23281	genome.wustl.edu	37	13	29600650	29600650	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033602.2	+1	validated	p.S615	0.911	48	0%	40	30%	0	-	-	-	-	NULL
MTUS2	23281	genome.wustl.edu	37	13	29933428	29933428	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033602.2	+1	validated	p.R989*	0.853	38	0%	24	16.7%	0	-	-	-	-	NULL
ALOX5AP	241	genome.wustl.edu	37	13	31338232	31338232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001629.2	+1	reviewed	p.L159F	0.998	441	0%	345	38.3%	120	0.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31712697	31712697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006644.2	-1	validated	p.K739N	0.999	248	0%	216	29.6%	20	15%	benign(0.269)	deleterious(0.02)	neutral(0.412)	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
FRY	10129	genome.wustl.edu	37	13	32709304	32709304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.R354Q	1.000	83	0%	84	31%	1	0%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	NULL
BRCA2	675	genome.wustl.edu	37	13	32930610	32930610	+	Missense_Mutation	SNP	G	G	A	rs80358973		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.R2494Q	1.000	143	0%	138	29.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical
PDS5B	23047	genome.wustl.edu	37	13	33316753	33316753	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015032.3	+1	reviewed	p.R834*	1.000	305	0.3%	254	13.8%	2	50%	-	-	-	superfamily_ARM repeat
KL	9365	genome.wustl.edu	37	13	33628019	33628019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004795.3	+1	reviewed	p.S312N	0.003	232	0%	198	24.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
STARD13	90627	genome.wustl.edu	37	13	33704363	33704363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178006.3	-1	validated	p.R151C	1.000	54	0%	39	28.2%	8	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NBEA	26960	genome.wustl.edu	37	13	35926411	35926411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.L2044I	0.973	149	0%	125	18.4%	0	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	HMMPfam_DUF1088,superfamily_ARM repeat
TRPC4	7223	genome.wustl.edu	37	13	38320192	38320192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.R260I	0.977	192	0%	135	24.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FREM2	341640	genome.wustl.edu	37	13	39262423	39262423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207361.4	+1	reviewed	p.E314D	1.000	58	0%	29	31%	2	100%	benign(0.285)	tolerated(0.26)	neutral(0.121)	NULL
COG6	57511	genome.wustl.edu	37	13	40233628	40233628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020751.2	+1	reviewed	p.F94S	1.000	159	0%	181	29.3%	1	100%	probably_damaging(0.986)	tolerated(0.25)	deleterious(0.471)	HMMPfam_COG6
ENSG00000207458	0	genome.wustl.edu	37	13	40800998	40800998	+	RNA	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384727	+1	novel	NULL	0.149	245	0%	237	17.3%	0	-	-	-	-	-
AKAP11	11215	genome.wustl.edu	37	13	42874080	42874080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016248.2	+1	reviewed	p.K400Q	0.997	103	0%	79	10.1%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
COG3	83548	genome.wustl.edu	37	13	46039324	46039324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031431.2	+1	reviewed	p.E51D	1.000	30	0%	19	31.6%	22	59%	benign(0.003)	tolerated(0.41)	neutral(0.015)	NULL
FAM194B	220081	genome.wustl.edu	37	13	46149043	46149043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182542.2	-1	predicted	p.E328D	0.000	298	0%	291	26.8%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46549439	46549439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015070.3	-1	validated	p.G816E	0.523	471	0%	431	21.6%	1	100%	unknown(0)	tolerated(1)	-	NULL
HTR2A	3356	genome.wustl.edu	37	13	47409732	47409732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000621.3	-1	reviewed	p.S219L	0.554	55	0%	47	27.7%	0	-	benign(0.208)	tolerated(0.19)	neutral(0.070)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM124A	220108	genome.wustl.edu	37	13	51855062	51855062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145019.2	+1	predicted	p.F473L	1.000	42	0%	32	15.6%	0	-	benign(0.189)	tolerated(0.48)	neutral(0.028)	NULL
PCDH17	27253	genome.wustl.edu	37	13	58208243	58208243	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.I521	1.000	17	0%	25	36%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DIAPH3	81624	genome.wustl.edu	37	13	60590209	60590209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042517.1	-1	validated	p.K233Q	0.997	294	0%	247	19.4%	0	-	benign(0.011)	tolerated(0.37)	neutral(0.019)	HMMPfam_Drf_GBD
PCDH9	5101	genome.wustl.edu	37	13	67801299	67801299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203487.2	-1	reviewed	p.S425Y	1.000	137	0%	117	23.1%	1	100%	possibly_damaging(0.625)	deleterious(0.01)	deleterious(0.624)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH9	5101	genome.wustl.edu	37	13	67801427	67801427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203487.2	-1	reviewed	p.K382N	1.000	172	0%	135	17%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,superfamily_Cadherin-like
MYCBP2	23077	genome.wustl.edu	37	13	77745695	77745695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.A1871V	1.000	254	0%	215	14.4%	1	0%	probably_damaging(0.99)	tolerated(0.53)	neutral(0.449)	NULL
SCEL	8796	genome.wustl.edu	37	13	78192177	78192177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144777.2	+1	validated	p.A537V	0.997	234	0%	172	21.5%	0	-	possibly_damaging(0.8)	deleterious(0.01)	deleterious(0.707)	NULL
SLITRK6	84189	genome.wustl.edu	37	13	86370267	86370267	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032229.2	-1	validated	p.I126S	1.000	169	0%	190	18.9%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00369,superfamily_L domain-like
GPC5	2262	genome.wustl.edu	37	13	92101156	92101156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004466.4	+1	reviewed	p.R102Q	0.997	152	0%	150	20%	0	-	benign(0.041)	tolerated(0.62)	neutral(0.007)	HMMPfam_Glypican
ABCC4	10257	genome.wustl.edu	37	13	95899262	95899262	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005845.3	-1	reviewed	p.S91	0.278	227	0%	205	17.1%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
UGGT2	55757	genome.wustl.edu	37	13	96489364	96489364	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020121.3	-1	validated	p.K1459	0.717	367	0%	361	31.6%	5	40%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
IPO5	3843	genome.wustl.edu	37	13	98668014	98668014	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000469360	+1	known	p.S826L	0.964	251	0%	220	45.5%	52	48%	-	-	-	superfamily_ARM repeat
ZIC5	85416	genome.wustl.edu	37	13	100617631	100617631	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033132.3	-1	validated	p.*664Y	0.997	53	0%	59	22%	0	-	-	-	-	NULL
NALCN	259232	genome.wustl.edu	37	13	101797226	101797226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052867.2	-1	validated	p.A621T	1.000	290	0%	283	32.2%	0	-	benign(0.014)	tolerated(0.56)	neutral(0.007)	NULL
TPP2	7174	genome.wustl.edu	37	13	103292684	103292684	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003291.2	+1	reviewed	p.R660*	1.000	327	0%	274	21.9%	13	15.3%	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103383855	103383855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.K6246E	0.000	175	0%	176	31.2%	0	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103385602	103385602	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.I5663	0.000	282	0%	256	31.2%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103392957	103392957	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.E3293*	0.000	295	0%	261	26.8%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394925	103394925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.D2637Y	0.001	148	0%	137	23.4%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103397061	103397061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.E1925*	0.001	164	0%	170	18.2%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103397339	103397339	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.S1832*	0.018	393	0%	358	17.6%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103397417	103397417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.R1806I	0.000	357	0%	348	20.1%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103398607	103398607	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.Q1409	0.000	76	0%	84	29.8%	0	-	-	-	-	NULL
TNFSF13B	10673	genome.wustl.edu	37	13	108955898	108955898	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006573.3	+1	reviewed	p.R231*	1.000	294	0%	276	32.2%	6	33.3%	-	-	-	HMMPfam_TNF,superfamily_TNF-like
MYO16	23026	genome.wustl.edu	37	13	109379811	109379811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.F107L	1.000	295	0%	234	21.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MYO16	23026	genome.wustl.edu	37	13	109661329	109661329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.E821K	1.000	198	0%	168	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
F10	2159	genome.wustl.edu	37	13	113793763	113793763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000504.3	+1	reviewed	p.E117K	0.074	204	0%	162	33.3%	0	-	benign(0.072)	tolerated(0.05)	neutral(0.350)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2
GRTP1	79774	genome.wustl.edu	37	13	113979998	113979998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024719.2	-1	validated	p.M300T	0.374	111	0%	103	12.6%	3	33.3%	benign(0)	tolerated(0.49)	neutral(0.011)	superfamily_Ypt/Rab-GAP domain of gyp1p
DCUN1D2	55208	genome.wustl.edu	37	13	114128488	114128488	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014283.1	-1	validated	p.F157L	1.000	235	0%	180	31.1%	1	100%	benign(0.004)	tolerated(0.53)	neutral(0.007)	HMMPfam_DUF298
OR4M1	441670	genome.wustl.edu	37	14	20248736	20248736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005500.1	+1	provisional	p.F85L	0.995	713	0%	579	20.2%	0	-	benign(0.17)	tolerated(1)	neutral(0.015)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4M1	441670	genome.wustl.edu	37	14	20248893	20248893	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005500.1	+1	provisional	p.R138*	0.156	566	0%	452	19.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNASE7	84659	genome.wustl.edu	37	14	21511325	21511325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032572.3	+1	validated	p.I58M	0.178	251	0%	176	29%	0	-	benign(0.42)	deleterious(0)	deleterious(0.581)	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
SUPT16H	11198	genome.wustl.edu	37	14	21826541	21826541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007192.3	-1	reviewed	p.F783V	1.000	151	0%	167	19.8%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SUPT16H	11198	genome.wustl.edu	37	14	21837508	21837508	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007192.3	-1	reviewed	p.R213*	1.000	167	0%	150	31.3%	10	0%	-	-	-	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
CDH24	64403	genome.wustl.edu	37	14	23523830	23523830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022478.3	-1	validated	p.F223L	0.991	91	0%	80	20%	10	50%	probably_damaging(0.953)	deleterious(0.02)	deleterious(0.780)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CMTM5	116173	genome.wustl.edu	37	14	23847686	23847686	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138460.2	+1	reviewed	p.F85	0.416	284	0%	191	34.6%	0	-	-	-	-	HMMPfam_MARVEL
AP1G2	8906	genome.wustl.edu	37	14	24035773	24035773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003917.2	-1	reviewed	p.K109N	1.000	228	0%	137	24.1%	80	46.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
NYNRIN	57523	genome.wustl.edu	37	14	24880576	24880576	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025081.2	+1	validated	p.T854	0.790	205	0%	178	29.8%	17	23.5%	-	-	-	NULL
CMA1	1215	genome.wustl.edu	37	14	24976573	24976573	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001836.2	-1	reviewed	p.H66Q	0.996	121	0%	115	32.2%	0	-	possibly_damaging(0.887)	deleterious(0.02)	deleterious(0.730)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
GZMH	2999	genome.wustl.edu	37	14	25075921	25075921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033423.3	-1	provisional	p.D210G	0.000	118	0%	115	28.7%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SCFD1	23256	genome.wustl.edu	37	14	31139577	31139577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016106.2	+1	validated	p.K324T	1.000	80	0%	110	26.4%	2	50%	possibly_damaging(0.939)	tolerated(0.16)	neutral(0.444)	HMMPfam_Sec1,superfamily_Sec1-like
HECTD1	25831	genome.wustl.edu	37	14	31578713	31578713	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.R2124*	0.998	150	0%	141	29.8%	31	19.3%	-	-	-	NULL
HECTD1	25831	genome.wustl.edu	37	14	31609180	31609180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.R966Q	1.000	255	0.4%	239	18%	5	0%	possibly_damaging(0.67)	tolerated(0.51)	neutral(0.246)	NULL
FAM177A1	283635	genome.wustl.edu	37	14	35550401	35550401	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173607.3	+1	validated	p.E226D	0.994	156	0%	190	20%	8	25%	possibly_damaging(0.857)	tolerated(0.22)	neutral(0.373)	NULL
RALGAPA1	253959	genome.wustl.edu	37	14	36154179	36154179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194301.2	-1	provisional	p.S911L	1.000	177	0%	166	31.9%	4	50%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
BRMS1L	84312	genome.wustl.edu	37	14	36334963	36334963	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032352.3	+1	reviewed	p.T241	0.988	270	0%	233	22.7%	3	33.3%	-	-	-	NULL
SEC23A	10484	genome.wustl.edu	37	14	39560823	39560823	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006364.2	-1	reviewed	p.S154*	1.000	190	0.5%	227	27.8%	2	0%	-	-	-	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995
LRFN5	145581	genome.wustl.edu	37	14	42355983	42355983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152447.3	+1	validated	p.R52I	1.000	140	0%	130	29.2%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMSmart_LRRNT,superfamily_SSF52058
LRFN5	145581	genome.wustl.edu	37	14	42356666	42356666	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152447.3	+1	validated	p.E280*	1.000	309	0%	251	20.7%	0	-	-	-	-	HMMSmart_LRRCT,superfamily_SSF48726,superfamily_SSF52058
MDGA2	161357	genome.wustl.edu	37	14	47351331	47351331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113498.1	-1	validated	p.K709Q	1.000	129	0%	156	22.4%	0	-	possibly_damaging(0.608)	tolerated(0.13)	neutral(0.463)	superfamily_FN_III-like
CDKL1	8814	genome.wustl.edu	37	14	50799072	50799072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004196.3	-1	reviewed	p.E293K	1.000	548	0%	503	22.7%	1	0%	possibly_damaging(0.515)	tolerated(0.21)	neutral(0.217)	superfamily_Protein kinase-like (PK-like)
NIN	51199	genome.wustl.edu	37	14	51225017	51225017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020921.3	-1	reviewed	p.E911K	0.991	234	0%	186	36.6%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58831131	58831131	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002892.3	+1	reviewed	p.K775T	0.997	38	0%	68	14.7%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58832908	58832908	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002892.3	+1	reviewed	p.P1161	0.681	101	0%	86	11.6%	1	0%	-	-	-	NULL
C14orf38	729665	genome.wustl.edu	37	14	59977503	59977503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000281581	-1	known	p.E722D	0.005	385	0%	291	26.8%	0	-	benign(0.008)	tolerated(0.38)	neutral(0.018)	NULL
SIX1	6495	genome.wustl.edu	37	14	61113285	61113285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005982.3	-1	reviewed	p.E191K	1.000	129	0%	143	21%	2	0%	benign(0.35)	deleterious(0)	deleterious(0.555)	superfamily_Homeodomain-like
SLC38A6	145389	genome.wustl.edu	37	14	61512128	61512128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153811.2	+1	validated	p.Y270C	1.000	408	0%	368	21.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aa_trans
SYT16	83851	genome.wustl.edu	37	14	62462909	62462909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031914.2	+1	validated	p.D58Y	0.909	134	0%	119	33.6%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63316376	63316376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139318.3	-1	reviewed	p.E522K	1.000	186	0%	181	15.5%	0	-	benign(0.123)	tolerated(0.28)	neutral(0.042)	superfamily_cAMP-binding domain-like
RHOJ	57381	genome.wustl.edu	37	14	63747757	63747757	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020663.3	+1	provisional	p.V102	0.749	221	0%	164	31.1%	11	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SYNE2	23224	genome.wustl.edu	37	14	64483209	64483209	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.E1583*	1.000	52	0%	67	38.8%	0	-	-	-	-	superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64518296	64518296	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.T2555	0.006	89	0%	102	33.3%	0	-	-	-	-	NULL
ZBTB1	22890	genome.wustl.edu	37	14	64990034	64990034	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123329.1	+1	validated	p.K604	1.000	97	0%	86	10.5%	16	18.7%	-	-	-	superfamily_SSF57667
ENSG00000249603	0	genome.wustl.edu	37	14	65067009	65067009	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509438	+1	novel	NULL	1.000	152	0%	127	24.4%	2	0%	-	-	-	-
SPTB	6710	genome.wustl.edu	37	14	65246548	65246548	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024858.2	-1	reviewed	p.I1456	0.885	84	0%	93	23.7%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTB	6710	genome.wustl.edu	37	14	65250971	65250971	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024858.2	-1	reviewed	p.I1332	0.003	258	0.4%	176	33%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
GPHN	10243	genome.wustl.edu	37	14	67579744	67579744	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020806.4	+1	reviewed	p.G494	1.000	147	0%	136	16.9%	6	50%	-	-	-	HMMPfam_MoeA_N,superfamily_MoeA_N
ATP6V1D	51382	genome.wustl.edu	37	14	67819671	67819671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015994.2	-1	reviewed	p.R43Q	1.000	240	0.4%	267	31.8%	13	30.7%	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	HMMPfam_ATP-synt_D
VTI1B	10490	genome.wustl.edu	37	14	68126569	68126569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006370.2	-1	validated	p.R82Q	1.000	188	0%	130	29.2%	103	40.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_V-SNARE
SLC8A3	6547	genome.wustl.edu	37	14	70518724	70518724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183002.1	-1	reviewed	p.E672K	1.000	403	0%	386	30.1%	0	-	possibly_damaging(0.828)	deleterious(0)	deleterious(0.758)	NULL
ADAM21	8747	genome.wustl.edu	37	14	70925767	70925767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003813.2	+1	reviewed	p.I517M	0.973	42	0%	36	22.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_ADAM_CR,HMMSmart_SM00608
PCNX	22990	genome.wustl.edu	37	14	71542981	71542981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014982.2	+1	validated	p.R1728C	0.992	144	0.7%	130	29.2%	16	25%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PSEN1	5663	genome.wustl.edu	37	14	73653578	73653578	+	Silent	SNP	T	T	G	rs63750879		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000021.3	+1	reviewed	p.L166	0.997	654	0%	668	19%	16	18.7%	-	-	-	HMMPfam_Presenilin,HMMSmart_SM00730
PAPLN	89932	genome.wustl.edu	37	14	73731278	73731278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000216658	+1	known	p.S947Y	0.183	62	0%	32	46.9%	1	100%	-	-	-	NULL
NUMB	8650	genome.wustl.edu	37	14	73743299	73743299	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005743.1	-1	reviewed	p.E648A	1.000	158	0%	138	15.2%	33	42.4%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KIAA0317	9870	genome.wustl.edu	37	14	75143373	75143373	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039479.1	-1	validated	p.Q188	1.000	284	0%	228	35.1%	5	60%	-	-	-	PatternScan_RCC1_2
MLH3	27030	genome.wustl.edu	37	14	75515730	75515730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040108.1	-1	reviewed	p.R210Q	1.000	58	0%	48	20.8%	1	0%	unknown(0)	deleterious(0.02)	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Ribosomal protein S5 domain 2-like
C14orf118	55668	genome.wustl.edu	37	14	76638294	76638294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017926.2	+1	validated	p.R279I	1.000	157	0%	158	18.4%	6	50%	probably_damaging(0.959)	tolerated(0.12)	deleterious(0.663)	NULL
ANGEL1	23357	genome.wustl.edu	37	14	77255579	77255579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015305.3	-1	validated	p.A669T	0.997	81	0%	60	13.3%	5	0%	benign(0.004)	tolerated(0.38)	neutral(0.018)	NULL
TMEM63C	57156	genome.wustl.edu	37	14	77685169	77685169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020431.2	+1	validated	p.P5S	0.000	66	1.5%	26	23.1%	1	100%	possibly_damaging(0.771)	-	-	NULL
TMEM63C	57156	genome.wustl.edu	37	14	77699815	77699815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020431.2	+1	validated	p.R172W	0.997	214	0%	207	11.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADCK1	57143	genome.wustl.edu	37	14	78325603	78325603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020421.3	+1	validated	p.R135Q	0.993	31	0%	18	33.3%	7	42.8%	possibly_damaging(0.687)	tolerated(0.05)	deleterious(0.591)	superfamily_Kinase_like
NRXN3	9369	genome.wustl.edu	37	14	80130131	80130131	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004796.4	+1	reviewed	p.K779T	1.000	169	0%	142	12%	6	33.3%	benign(0.108)	tolerated(0.33)	neutral(0.033)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CEP128	145508	genome.wustl.edu	37	14	81371212	81371212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152446.3	-1	validated	p.R142Q	0.017	311	0%	316	12.3%	1	0%	benign(0.152)	deleterious(0.03)	neutral(0.378)	NULL
C14orf102	55051	genome.wustl.edu	37	14	90769176	90769176	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017970.2	-1	validated	p.S433	0.002	101	0%	92	16.3%	0	-	-	-	-	HMMPfam_DUF1740,superfamily_Prenyl_trans
C14orf102	55051	genome.wustl.edu	37	14	90778779	90778779	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017970.2	-1	validated	p.A172	0.241	160	0%	177	11.3%	3	0%	-	-	-	NULL
TRIP11	9321	genome.wustl.edu	37	14	92470836	92470836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004239.3	-1	reviewed	p.L1162V	0.999	125	0%	116	31.9%	2	50%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93760918	93760918	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.E150*	1.000	67	0%	68	19.1%	2	0%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
UNC79	57578	genome.wustl.edu	37	14	94044269	94044269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020818.3	+1	validated	p.R588W	1.000	294	0.3%	215	35.3%	0	-	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	NULL
ASB2	51676	genome.wustl.edu	37	14	94420665	94420665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016150.3	-1	reviewed	p.R111Q	0.058	54	0%	41	26.8%	5	0%	benign(0.014)	tolerated(0.4)	neutral(0.017)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
DDX24	57062	genome.wustl.edu	37	14	94545740	94545740	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020414.3	-1	reviewed	p.E117*	0.127	497	0%	432	21.5%	11	0%	-	-	-	NULL
PPP4R4	57718	genome.wustl.edu	37	14	94708150	94708150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058237.1	+1	reviewed	p.L334F	1.000	144	0%	200	16.5%	0	-	benign(0.099)	tolerated(0.1)	neutral(0.294)	superfamily_ARM repeat
CLMN	79789	genome.wustl.edu	37	14	95660901	95660901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024734.3	-1	validated	p.R914Q	1.000	215	0%	180	35%	31	41.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AK7	122481	genome.wustl.edu	37	14	96922741	96922741	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152327.2	+1	validated	p.E386*	0.001	370	0%	262	31.3%	7	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
VRK1	7443	genome.wustl.edu	37	14	97342379	97342379	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003384.2	+1	reviewed	p.E361*	0.817	176	0%	156	17.3%	1	0%	-	-	-	NULL
BCL11B	64919	genome.wustl.edu	37	14	99724144	99724144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138576.2	-1	reviewed	p.E31K	1.000	44	0%	36	19.4%	1	0%	benign(0.03)	deleterious(0.03)	neutral(0.366)	NULL
ZNF839	55778	genome.wustl.edu	37	14	102792358	102792358	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018335.3	+1	validated	p.E109*	0.006	74	0%	71	11.3%	0	-	-	-	-	NULL
CINP	51550	genome.wustl.edu	37	14	102825868	102825868	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032630.2	-1	reviewed	p.K22Q	1.000	202	0%	213	34.7%	6	50%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
KLC1	3831	genome.wustl.edu	37	14	104136524	104136524	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130107.1	+1	reviewed	p.A297	0.001	242	0%	223	17.9%	21	23.8%	-	-	-	HMMPfam_TPR_1,PatternScan_KINESIN_LIGHT,HMMSmart_SM00028,superfamily_TPR-like
AHNAK2	113146	genome.wustl.edu	37	14	105413989	105413989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.A2600V	0.000	174	0%	209	23.9%	1	0%	unknown(0)	tolerated(0.44)	-	NULL
IGHG2	3501	genome.wustl.edu	37	14	106109781	106109781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390545	-1	known	p.L247R	0.799	269	0%	228	17.1%	2842	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHV1-18	28468	genome.wustl.edu	37	14	106641590	106641590	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390605	-1	known	p.D108	0.943	289	0.3%	196	19.4%	252	0%	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV7-81	28378	genome.wustl.edu	37	14	107282918	107282918	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390639	-1	known	p.G75	0.000	203	0%	124	30.6%	1	100%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
GOLGA6L6	727832	genome.wustl.edu	37	15	20739676	20739676	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145004.1	-1	inferred	p.R692*	0.819	68	0%	41	12.2%	1	0%	-	-	-	NULL
TUBGCP5	114791	genome.wustl.edu	37	15	22840328	22840328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102610.1	+1	validated	p.N132D	0.994	223	0%	203	19.7%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
LOC283683	283683	genome.wustl.edu	37	15	23128327	23128327	+	RNA	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_015696.3	-1	model	NULL	0.007	22	0%	44	38.6%	0	-	-	-	-	-
UBE3A	7337	genome.wustl.edu	37	15	25615811	25615811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000462.2	-1	reviewed	p.I507L	1.000	167	0%	117	12.8%	16	0%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
GABRA5	2558	genome.wustl.edu	37	15	27128356	27128356	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000810.3	+1	reviewed	p.F84	0.950	77	0%	38	31.6%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
MTMR10	54893	genome.wustl.edu	37	15	31233730	31233730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017762.2	-1	validated	p.K759N	0.969	129	0%	99	36.4%	1	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
RYR3	6263	genome.wustl.edu	37	15	33895387	33895387	+	Silent	SNP	C	C	T	rs193106812	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.F662	0.995	99	0%	79	32.9%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR3	6263	genome.wustl.edu	37	15	33988673	33988673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.L2039F	1.000	267	0%	210	20%	0	-	probably_damaging(0.991)	-	-	HMMPfam_RYDR_ITPR
RYR3	6263	genome.wustl.edu	37	15	34065799	34065799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.K3040N	1.000	335	0%	276	31.9%	0	-	probably_damaging(0.955)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34123273	34123273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.S3815Y	1.000	197	0%	165	31.5%	0	-	probably_damaging(0.996)	-	-	HMMPfam_RIH_assoc
CHRM5	1133	genome.wustl.edu	37	15	34355586	34355586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012125.3	+1	validated	p.R223Q	1.000	123	0%	109	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
SLC12A6	9990	genome.wustl.edu	37	15	34538065	34538065	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133647.1	-1	reviewed	p.F551	1.000	67	0%	67	17.9%	7	28.5%	-	-	-	HMMPfam_AA_permease
SLC12A6	9990	genome.wustl.edu	37	15	34553178	34553178	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133647.1	-1	reviewed	p.S120	1.000	122	0%	180	17.8%	1	0%	-	-	-	NULL
AQR	9716	genome.wustl.edu	37	15	35166938	35166938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.R1122H	1.000	216	0%	173	30.6%	20	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
AQR	9716	genome.wustl.edu	37	15	35178830	35178830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.R905I	1.000	179	0.6%	199	14.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
ZNF770	54989	genome.wustl.edu	37	15	35274690	35274690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014106.2	-1	validated	p.A316T	0.996	75	0%	87	12.6%	1	0%	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
TMCO5A	145942	genome.wustl.edu	37	15	38228627	38228627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152453.2	+1	provisional	p.L35I	0.989	164	0%	125	26.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
BUB1B	701	genome.wustl.edu	37	15	40505586	40505586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001211.5	+1	reviewed	p.I863M	0.921	267	0%	242	31.8%	7	71.4%	benign(0.386)	tolerated(0.08)	neutral(0.423)	superfamily_Protein kinase-like (PK-like)
CASC5	57082	genome.wustl.edu	37	15	40914902	40914902	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170589.3	+1	validated	p.E840*	0.005	99	0%	109	17.4%	0	-	-	-	-	NULL
RTF1	23168	genome.wustl.edu	37	15	41767951	41767951	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015138.4	+1	validated	p.I472	1.000	91	0%	92	18.5%	1	100%	-	-	-	NULL
LTK	4058	genome.wustl.edu	37	15	41801258	41801258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002344.5	-1	reviewed	p.S356N	0.010	130	0%	136	31.6%	2	0%	benign(0.104)	tolerated(0.21)	neutral(0.052)	NULL
TYRO3	7301	genome.wustl.edu	37	15	41865229	41865229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006293.3	+1	reviewed	p.F635L	1.000	70	0%	63	34.9%	10	30%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
MGA	23269	genome.wustl.edu	37	15	41988480	41988480	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.E424	1.000	117	0%	117	19.7%	2	50%	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42003068	42003068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.D869Y	1.000	207	0%	192	27.6%	1	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
MGA	23269	genome.wustl.edu	37	15	42042214	42042214	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.E2186*	0.872	109	0.9%	129	31.8%	1	0%	-	-	-	NULL
SPTBN5	51332	genome.wustl.edu	37	15	42169365	42169365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016642.2	-1	validated	p.F1185L	0.877	82	0%	69	39.1%	0	-	possibly_damaging(0.633)	tolerated(0.6)	neutral(0.226)	HMMPfam_Spectrin,HMMSmart_SM00150
TMEM87A	25963	genome.wustl.edu	37	15	42551161	42551161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110503.1	-1	validated	p.F178V	0.000	151	0%	176	11.4%	0	-	unknown(0)	-	-	NULL
SNAP23	8773	genome.wustl.edu	37	15	42823630	42823630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003825.2	+1	reviewed	p.R197H	1.000	197	0%	189	19.6%	40	42.5%	benign(0.186)	deleterious(0.01)	neutral(0.423)	HMMPfam_SNARE,HMMSmart_SM00397
STARD9	57519	genome.wustl.edu	37	15	42984681	42984681	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.T3549	0.000	34	0%	27	22.2%	2	0%	-	-	-	NULL
TTBK2	146057	genome.wustl.edu	37	15	43109262	43109262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173500.3	-1	reviewed	p.R191C	1.000	129	0%	71	15.5%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TP53BP1	7158	genome.wustl.edu	37	15	43707896	43707896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141980.1	-1	validated	p.P1662L	1.000	182	0%	163	11.7%	72	11.1%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
STRC	161497	genome.wustl.edu	37	15	43900289	43900289	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153700.2	-1	reviewed	p.R1224*	0.999	207	0%	177	20.3%	0	-	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	43997076	43997076	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381686	-1	known	e19-1	0.110	73	0%	69	11.6%	0	-	-	-	-	-
FRMD5	84978	genome.wustl.edu	37	15	44180448	44180448	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032892.3	-1	validated	p.L270R	1.000	202	0%	209	19.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_FERM_C,superfamily_PH domain-like
DUOX2	50506	genome.wustl.edu	37	15	45392269	45392269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014080.4	-1	reviewed	p.V1055M	0.998	126	0%	90	20%	0	-	benign(0.115)	deleterious(0.01)	neutral(0.415)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51828614	51828614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.K688T	0.004	270	0%	299	22.4%	0	-	benign(0.017)	tolerated(0.22)	neutral(0.043)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51860704	51860704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.N89H	1.000	124	0%	104	25%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	superfamily_WD40 repeat-like
MYO5A	4644	genome.wustl.edu	37	15	52680048	52680048	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.I577S	1.000	268	0.4%	310	31.9%	1	100%	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM214A	56204	genome.wustl.edu	37	15	52900882	52900882	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019600.2	-1	validated	p.K743N	0.753	649	0%	599	21.4%	2	50%	possibly_damaging(0.783)	deleterious(0.02)	deleterious(0.676)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54305396	54305396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.A99V	1.000	91	0%	98	33.7%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
CCPG1	9236	genome.wustl.edu	37	15	55652650	55652650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004748.3	-1	validated	p.E441K	1.000	364	0.3%	278	34.9%	28	28.5%	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	NULL
CCPG1	9236	genome.wustl.edu	37	15	55664133	55664133	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004748.3	-1	validated	p.S188	0.918	216	0%	139	28.1%	13	46.1%	-	-	-	NULL
DYX1C1	161582	genome.wustl.edu	37	15	55731719	55731719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130810.2	-1	reviewed	p.D282N	0.998	262	0%	221	19.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TEX9	374618	genome.wustl.edu	37	15	56704563	56704563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198524.1	+1	provisional	p.R298C	1.000	110	0%	129	27.9%	1	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56924164	56924164	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017661.2	-1	validated	p.I824	0.023	371	0%	346	22.8%	6	0%	-	-	-	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56996401	56996401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017661.2	-1	validated	p.K31N	1.000	445	0.2%	410	15.4%	7	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
AQP9	366	genome.wustl.edu	37	15	58471386	58471386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020980.3	+1	reviewed	p.L185F	0.860	104	0%	121	21.5%	0	-	possibly_damaging(0.463)	tolerated(0.45)	neutral(0.164)	HMMPfam_MIP,superfamily_Aquaporin-like
SLTM	79811	genome.wustl.edu	37	15	59186051	59186051	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024755.2	-1	validated	p.S539	0.000	549	0%	527	20.1%	3	0%	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	63112759	63112759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015059.2	+1	reviewed	p.E2318K	1.000	97	0%	94	16%	16	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF109885
HERC1	8925	genome.wustl.edu	37	15	63948004	63948004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.L3341V	0.988	218	0%	172	25%	5	60%	probably_damaging(0.993)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63986309	63986309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.D1843G	1.000	158	0%	136	16.9%	0	-	probably_damaging(0.959)	-	-	NULL
ZNF609	23060	genome.wustl.edu	37	15	64972875	64972875	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015042.1	+1	provisional	p.R1326*	1.000	146	0%	157	27.4%	6	50%	-	-	-	NULL
DPP8	54878	genome.wustl.edu	37	15	65748693	65748693	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197960.2	-1	reviewed	p.N679T	1.000	96	0%	96	34.4%	1	100%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	superfamily_alpha/beta-Hydrolases
DENND4A	10260	genome.wustl.edu	37	15	65962505	65962505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144823.1	-1	validated	p.R1495W	1.000	149	0%	75	18.7%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SMAD3	4088	genome.wustl.edu	37	15	67482810	67482810	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005902.3	+1	reviewed	p.Q405L	1.000	109	0.9%	87	12.6%	20	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_SMAD/FHA domain
SKOR1	390598	genome.wustl.edu	37	15	68119024	68119024	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380035	+1	known	p.G286	0.520	23	0%	17	23.5%	0	-	-	-	-	NULL
NOX5	79400	genome.wustl.edu	37	15	69339761	69339761	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024505.3	+1	validated	p.I549	0.964	86	0%	51	19.6%	0	-	-	-	-	HMMPfam_FAD_binding_8,superfamily_Riboflavin_synthase_like_b-brl
GLCE	26035	genome.wustl.edu	37	15	69560788	69560788	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015554.1	+1	validated	p.D353	1.000	121	0%	91	28.6%	1	0%	-	-	-	NULL
UACA	55075	genome.wustl.edu	37	15	70959638	70959638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018003.2	-1	validated	p.E1129*	0.692	58	0%	65	40%	2	0%	-	-	-	NULL
MYO9A	4649	genome.wustl.edu	37	15	72180447	72180447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.R1718Q	1.000	205	0%	219	21.9%	0	-	possibly_damaging(0.946)	deleterious(0.02)	deleterious(0.773)	NULL
TMEM202	338949	genome.wustl.edu	37	15	72691086	72691086	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080462.1	+1	provisional	p.T58	0.938	134	0%	111	10.8%	0	-	-	-	-	NULL
CYP11A1	1583	genome.wustl.edu	37	15	74635344	74635344	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000781.2	-1	reviewed	p.E322*	0.999	85	0%	50	26%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP11A1	1583	genome.wustl.edu	37	15	74659790	74659790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000781.2	-1	reviewed	p.R46H	0.612	159	0%	143	30.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SNX33	257364	genome.wustl.edu	37	15	75942338	75942338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153271.1	+1	provisional	p.E299K	1.000	57	0%	43	25.6%	14	42.8%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
C15orf27	123591	genome.wustl.edu	37	15	76452489	76452489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152335.2	+1	validated	p.L146M	0.962	443	0%	342	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SH2D7	646892	genome.wustl.edu	37	15	78390770	78390770	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101404.1	+1	provisional	p.H159	0.027	67	1.5%	49	30.6%	0	-	-	-	-	NULL
ACSBG1	23205	genome.wustl.edu	37	15	78486971	78486971	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015162.3	-1	reviewed	p.Y110	0.000	132	0%	81	14.8%	0	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
IL16	3603	genome.wustl.edu	37	15	81592044	81592044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172217.3	+1	reviewed	p.R793C	1.000	54	0%	40	20%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EFTUD1	79631	genome.wustl.edu	37	15	82511997	82511997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024580.5	-1	validated	p.R536Q	0.057	85	0%	114	31.6%	2	0%	benign(0.009)	tolerated(0.73)	neutral(0.002)	superfamily_Translation proteins
AP3B2	8120	genome.wustl.edu	37	15	83328710	83328710	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004644.3	-1	validated	p.I995	1.000	72	0%	57	29.8%	0	-	-	-	-	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84639305	84639305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.R854W	1.000	222	0%	193	10.9%	4	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ALPK3	57538	genome.wustl.edu	37	15	85407715	85407715	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.I1716	0.998	72	1.4%	61	26.2%	26	46.1%	-	-	-	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
SLC28A1	9154	genome.wustl.edu	37	15	85433735	85433735	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004213.3	+1	validated	p.R83*	0.013	46	0%	38	34.2%	0	-	-	-	-	NULL
AGBL1	123624	genome.wustl.edu	37	15	86686942	86686942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441037	+1	known	p.R26I	1.000	107	0%	105	24.8%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_ARM repeat
MIR7-2	407044	genome.wustl.edu	37	15	89155158	89155158	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384970	+1	known	NULL	0.654	51	0%	35	14.3%	0	-	-	-	-	-
AEN	64782	genome.wustl.edu	37	15	89172477	89172477	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022767.3	+1	validated	p.G187	1.000	60	0%	38	42.1%	24	29.1%	-	-	-	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
ACAN	176	genome.wustl.edu	37	15	89382017	89382017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013227.3	+1	reviewed	p.S65Y	1.000	194	0%	137	21.9%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ACAN	176	genome.wustl.edu	37	15	89385082	89385082	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013227.3	+1	reviewed	p.F247	0.999	141	0%	108	23.1%	0	-	-	-	-	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
ZNF774	342132	genome.wustl.edu	37	15	90897943	90897943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004309.2	+1	validated	p.E17D	0.975	237	0%	229	21%	3	0%	benign(0.098)	deleterious(0)	neutral(0.452)	NULL
ZNF774	342132	genome.wustl.edu	37	15	90904228	90904228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004309.2	+1	validated	p.A389T	0.026	78	1.3%	77	32.5%	1	0%	benign(0.007)	tolerated(0.48)	neutral(0.011)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLCO3A1	28232	genome.wustl.edu	37	15	92706023	92706023	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013272.3	+1	validated	p.I597	0.996	31	0%	19	31.6%	25	32%	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
LINS	55180	genome.wustl.edu	37	15	101114038	101114038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040614.1	-1	reviewed	p.S347L	0.326	132	0%	105	13.3%	6	50%	benign(0)	tolerated(1)	-	NULL
ASB7	140460	genome.wustl.edu	37	15	101188569	101188569	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198243.2	+1	reviewed	p.R287*	1.000	233	0.4%	189	18.5%	2	0%	-	-	-	HMMPfam_SOCS_box,HMMSmart_SM00253,superfamily_Ankyrin repeat
ZNF598	90850	genome.wustl.edu	37	16	2051623	2051623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431526	-1	known	p.G325E	1.000	41	0%	35	11.4%	26	7.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MLST8	64223	genome.wustl.edu	37	16	2256534	2256534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022372.3	+1	validated	p.N73T	1.000	185	0%	154	29.9%	181	44.7%	benign(0.002)	tolerated(0.59)	neutral(0.004)	superfamily_WD40 repeat-like
ECI1	1632	genome.wustl.edu	37	16	2290058	2290058	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001919.3	-1	reviewed	p.F277	0.356	108	0%	85	29.4%	230	38.6%	-	-	-	superfamily_ClpP/crotonase
ZNF434	54925	genome.wustl.edu	37	16	3434774	3434774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017810.2	-1	provisional	p.R95C	0.000	98	0%	101	28.7%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRAP1	10131	genome.wustl.edu	37	16	3724386	3724386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016292.2	-1	validated	p.T333M	0.998	68	0%	38	10.5%	528	1.7%	possibly_damaging(0.853)	tolerated(0.06)	deleterious(0.651)	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
PPL	5493	genome.wustl.edu	37	16	4934870	4934870	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.I1262	0.004	197	0%	171	10.5%	17	23.5%	-	-	-	NULL
ABAT	18	genome.wustl.edu	37	16	8873425	8873425	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000663.4	+1	reviewed	p.L453	0.997	196	0%	120	30.8%	8	12.5%	-	-	-	superfamily_PyrdxlP-dep_Trfase_major
C16orf72	29035	genome.wustl.edu	37	16	9210637	9210637	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014117.2	+1	validated	p.V232	1.000	194	0%	151	30.5%	20	35%	-	-	-	NULL
ATF7IP2	80063	genome.wustl.edu	37	16	10531984	10531984	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024997.2	+1	validated	p.I329	0.023	188	0%	193	29.5%	0	-	-	-	-	NULL
CLEC16A	23274	genome.wustl.edu	37	16	11272253	11272253	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015226.2	+1	validated	p.N956	0.001	32	3.1%	32	18.8%	44	36.3%	-	-	-	NULL
ZC3H7A	29066	genome.wustl.edu	37	16	11845324	11845324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014153.2	-1	provisional	p.K922T	0.998	334	0%	310	29%	24	37.5%	benign(0.268)	tolerated(0.1)	neutral(0.315)	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger
RSL1D1	26156	genome.wustl.edu	37	16	11944163	11944163	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015659.2	-1	validated	p.I73S	1.000	184	0%	188	33.5%	10	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Ribosomal protein L1
KIAA0430	9665	genome.wustl.edu	37	16	15719471	15719471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.E571K	1.000	184	0.5%	167	21.6%	2	0%	benign(0.032)	deleterious(0)	neutral(0.446)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MYH11	4629	genome.wustl.edu	37	16	15814759	15814759	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.F1583	0.630	115	0%	109	15.6%	0	-	-	-	-	HMMPfam_Myosin_tail_1
ABCC6	368	genome.wustl.edu	37	16	16259681	16259681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001171.5	-1	reviewed	p.F1035L	1.000	41	0%	37	16.2%	1	0%	probably_damaging(0.971)	tolerated(0.1)	deleterious(0.700)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
NOMO3	408050	genome.wustl.edu	37	16	16338991	16338991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004067.2	+1	reviewed	p.E157K	0.478	395	0%	311	26.4%	13	15.3%	benign(0.032)	tolerated(0.24)	neutral(0.039)	HMMPfam_Cna_B,superfamily_Starch-binding domain-like
NOMO2	283820	genome.wustl.edu	37	16	18560883	18560883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004060.1	-1	reviewed	p.E157K	0.410	375	0%	300	21.3%	13	38.4%	benign(0.021)	tolerated(0.24)	neutral(0.038)	HMMPfam_Cna_B,superfamily_Starch-binding domain-like
SMG1	23049	genome.wustl.edu	37	16	18859302	18859302	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.E1893*	1.000	207	0%	174	19.5%	0	-	-	-	-	NULL
TMC5	79838	genome.wustl.edu	37	16	19468326	19468326	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024780.4	+1	validated	p.E100*	0.407	143	0%	121	17.4%	0	-	-	-	-	NULL
GPRC5B	51704	genome.wustl.edu	37	16	19884033	19884033	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016235.1	-1	reviewed	p.Y45	1.000	28	0%	20	25%	25	12%	-	-	-	NULL
ACSM3	6296	genome.wustl.edu	37	16	20787222	20787222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005622.3	+1	validated	p.R94Q	0.981	136	0%	186	19.9%	1	0%	benign(0.076)	tolerated(0.14)	neutral(0.255)	superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20788861	20788861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005622.3	+1	validated	p.E199D	0.664	68	0%	68	20.6%	3	0%	benign(0)	tolerated(1)	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ZP2	7783	genome.wustl.edu	37	16	21222692	21222692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003460.1	-1	reviewed	p.F29L	0.018	228	0%	214	17.8%	0	-	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
VWA3A	146177	genome.wustl.edu	37	16	22109002	22109002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173615.3	+1	validated	p.T71A	1.000	316	0%	268	22%	1	100%	probably_damaging(0.991)	tolerated(0.3)	deleterious(0.473)	NULL
VWA3A	146177	genome.wustl.edu	37	16	22149750	22149750	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173615.3	+1	validated	p.E737*	0.893	148	0%	130	12.3%	1	0%	-	-	-	NULL
POLR3E	55718	genome.wustl.edu	37	16	22334210	22334210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018119.2	+1	validated	p.S342	0.779	38	0%	38	10.5%	51	13.7%	-	-	-	HMMPfam_Sin_N
GGA2	23062	genome.wustl.edu	37	16	23505688	23505688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015044.4	-1	reviewed	p.A63V	1.000	103	0%	94	33%	55	45.4%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS
PRKCB	5579	genome.wustl.edu	37	16	24226133	24226133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002738.6	+1	reviewed	p.S673N	1.000	89	0%	108	35.2%	0	-	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24582684	24582684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.R1433C	1.000	82	0%	113	15.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24831637	24831637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014494.2	+1	reviewed	p.R1753H	1.000	212	0%	136	16.2%	15	20%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
AQP8	343	genome.wustl.edu	37	16	25232799	25232799	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001169.2	+1	reviewed	p.A94	0.027	58	0%	58	10.3%	0	-	-	-	-	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP
KIAA0556	23247	genome.wustl.edu	37	16	27692775	27692775	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.F288	0.162	156	0%	150	34.7%	1	0%	-	-	-	NULL
ITGAL	3683	genome.wustl.edu	37	16	30490698	30490698	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002209.2	+1	reviewed	p.S164	0.000	199	0%	158	13.9%	5	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
SRCAP	10847	genome.wustl.edu	37	16	30723032	30723032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.E487K	0.896	122	0%	97	37.1%	7	71.4%	unknown(0)	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30749603	30749603	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.R2748*	1.000	51	0%	38	34.2%	77	41.5%	-	-	-	NULL
SETD1A	9739	genome.wustl.edu	37	16	30974763	30974763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.R176Q	1.000	102	0%	89	32.6%	16	43.7%	probably_damaging(0.993)	-	-	superfamily_SSF54928
ENSG00000198555	0	genome.wustl.edu	37	16	33784687	33784687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359871	+1	known	p.P491S	1.000	29	0%	29	24.1%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_SNF
NETO2	81831	genome.wustl.edu	37	16	47143460	47143460	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018092.3	-1	reviewed	p.R273*	0.997	144	0%	137	25.5%	3	0%	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ENSG00000247487	0	genome.wustl.edu	37	16	48382005	48382005	+	RNA	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501305	-1	known	NULL	1.000	37	0%	41	29.3%	0	-	-	-	-	-
SIAH1	6477	genome.wustl.edu	37	16	48396012	48396012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006610.1	-1	reviewed	p.P141T	1.000	132	0%	129	17.1%	28	25%	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_Traf_like,HMMPfam_Sina,superfamily_SSF57850
N4BP1	9683	genome.wustl.edu	37	16	48587562	48587562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153029.3	-1	validated	p.F636L	1.000	170	0%	187	28.3%	2	0%	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	NULL
N4BP1	9683	genome.wustl.edu	37	16	48595226	48595226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153029.3	-1	validated	p.S443Y	0.010	336	0%	318	20.1%	3	0%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
CBLN1	869	genome.wustl.edu	37	16	49315138	49315138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004352.3	-1	validated	p.R80H	1.000	48	2.1%	40	17.5%	1	100%	possibly_damaging(0.925)	tolerated(0.17)	neutral(0.432)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
ZNF423	23090	genome.wustl.edu	37	16	49672151	49672151	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015069.2	-1	reviewed	p.F304	0.750	84	0%	54	31.5%	16	25%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CYLD	1540	genome.wustl.edu	37	16	50826528	50826528	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015247.2	+1	reviewed	p.I754	1.000	112	0%	150	20.7%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
RBL2	5934	genome.wustl.edu	37	16	53476577	53476577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005611.3	+1	validated	p.E127K	1.000	106	0%	100	19%	1	100%	benign(0.406)	deleterious(0.03)	deleterious(0.495)	HMMSmart_CYCLIN
PRSS54	221191	genome.wustl.edu	37	16	58314650	58314650	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080492.1	-1	provisional	p.G222	1.000	42	0%	32	37.5%	4	75%	-	-	-	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
CNOT1	23019	genome.wustl.edu	37	16	58565905	58565905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.R2045Q	1.000	163	0%	115	27%	23	13%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Not1
CNOT1	23019	genome.wustl.edu	37	16	58620454	58620454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.R211H	1.000	136	0%	115	33.9%	0	-	possibly_damaging(0.7)	tolerated(0.08)	deleterious(0.551)	NULL
CDH8	1006	genome.wustl.edu	37	16	61858928	61858928	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001796.2	-1	reviewed	p.K275Q	1.000	185	0%	171	19.9%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	superfamily_Cadherin
CKLF	51192	genome.wustl.edu	37	16	66592130	66592130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016951.2	+1	reviewed	p.A39V	0.930	390	0.3%	411	32.4%	32	21.8%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_MARVEL
C16orf70	80262	genome.wustl.edu	37	16	67166366	67166366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025187.3	+1	provisional	p.S98Y	1.000	141	0%	111	12.6%	6	0%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_UPF0183
CTCF	10664	genome.wustl.edu	37	16	67644740	67644740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.E2G	1.000	55	0%	64	26.6%	8	37.5%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
CTCF	10664	genome.wustl.edu	37	16	67670646	67670646	+	Nonsense_Mutation	SNP	G	G	T	rs35257000	byCluster;byFrequency	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.E631*	1.000	75	0%	69	27.5%	6	16.6%	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70897082	70897082	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.F3824	0.003	132	0%	120	13.3%	5	0%	-	-	-	NULL
ZNF821	55565	genome.wustl.edu	37	16	71894069	71894069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017530.1	-1	provisional	p.R322Q	1.000	38	0%	34	11.8%	32	9.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PSMD7	5713	genome.wustl.edu	37	16	74334091	74334091	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002811.3	+1	reviewed	p.S51	1.000	252	0%	226	33.6%	65	43%	-	-	-	HMMPfam_Mov34,HMMSmart_JAB_MPN
BCAR1	9564	genome.wustl.edu	37	16	75276529	75276529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014567.3	-1	validated	p.P158S	0.993	274	0%	224	17.4%	50	30%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
NUDT7	283927	genome.wustl.edu	37	16	77775869	77775869	+	RNA	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024154.1	+1	reviewed	NULL	0.000	60	0%	61	44.3%	2	50%	-	-	-	-
C16orf46	123775	genome.wustl.edu	37	16	81095485	81095485	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152337.2	-1	validated	p.R157*	0.027	71	0%	68	29.4%	0	-	-	-	-	NULL
GCSH	2653	genome.wustl.edu	37	16	81118082	81118082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004483.4	-1	reviewed	p.S137Y	1.000	172	0.6%	167	26.3%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCV_H,superfamily_Single hybrid motif
PKD1L2	114780	genome.wustl.edu	37	16	81181001	81181001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052892.3	-1	reviewed	p.V1697A	0.357	243	0%	179	18.4%	0	-	possibly_damaging(0.452)	deleterious(0)	deleterious(0.593)	NULL
BCMO1	53630	genome.wustl.edu	37	16	81324161	81324161	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017429.2	+1	reviewed	p.C541	0.000	80	0%	79	27.8%	6	50%	-	-	-	NULL
MPHOSPH6	10200	genome.wustl.edu	37	16	82197737	82197737	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005792.2	-1	validated	p.I38	0.999	217	0%	235	13.6%	1	100%	-	-	-	HMMPfam_MPP6
ATP2C2	9914	genome.wustl.edu	37	16	84449126	84449126	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014861.2	+1	validated	p.E185*	1.000	91	0%	74	12.2%	21	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
USP10	9100	genome.wustl.edu	37	16	84793794	84793794	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005153.2	+1	reviewed	p.I489	0.043	202	0%	194	10.3%	17	17.6%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
VPS53	55275	genome.wustl.edu	37	17	489523	489523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128159.1	-1	reviewed	p.E434K	1.000	236	0%	227	35.7%	3	0%	benign(0.206)	tolerated(0.28)	neutral(0.052)	HMMPfam_Vps53_N
TIMM22	29928	genome.wustl.edu	37	17	902017	902017	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013337.2	+1	provisional	e2-2	1.000	473	0.2%	397	11.3%	0	-	-	-	-	-
PRPF8	10594	genome.wustl.edu	37	17	1579577	1579577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.P826T	1.000	149	0%	104	18.3%	43	30.2%	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	NULL
TSR1	55720	genome.wustl.edu	37	17	2237912	2237912	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018128.4	-1	validated	p.R279*	1.000	128	0%	130	13.8%	5	0%	-	-	-	HMMPfam_AARP2CN,HMMSmart_AARP2CN
OR1G1	8390	genome.wustl.edu	37	17	3030795	3030795	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003555.1	-1	provisional	p.F17	0.001	78	0%	83	22.9%	0	-	-	-	-	superfamily_SSF81321
TRPV3	162514	genome.wustl.edu	37	17	3436188	3436188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145068.2	-1	reviewed	p.E276D	0.998	69	0%	54	24.1%	0	-	benign(0.001)	tolerated(0.91)	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
UBE2G1	7326	genome.wustl.edu	37	17	4210355	4210355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003342.4	-1	reviewed	p.R37Q	1.000	202	0%	200	20.5%	5	40%	benign(0.019)	tolerated(0.12)	neutral(0.262)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
TM4SF5	9032	genome.wustl.edu	37	17	4685935	4685935	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003963.2	+1	reviewed	e3+1	0.986	49	0%	32	28.1%	0	-	-	-	-	-
USP6	9098	genome.wustl.edu	37	17	5041531	5041531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004505.2	+1	validated	p.K347N	0.981	74	0%	57	22.8%	0	-	unknown(0)	deleterious(0.01)	-	superfamily_Ypt/Rab-GAP domain of gyp1p
NUP88	4927	genome.wustl.edu	37	17	5307519	5307519	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002532.3	-1	reviewed	p.Y364	0.998	142	0%	148	11.5%	55	9%	-	-	-	HMMPfam_Nup88
DERL2	51009	genome.wustl.edu	37	17	5383380	5383380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016041.3	-1	provisional	p.S203Y	1.000	146	0%	158	16.5%	11	18.1%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_DER1
PITPNM3	83394	genome.wustl.edu	37	17	6381923	6381923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031220.3	-1	reviewed	p.N241D	1.000	91	0%	81	14.8%	4	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FXR2	9513	genome.wustl.edu	37	17	7496422	7496422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004860.3	-1	reviewed	p.D470N	0.998	22	4.5%	32	18.8%	3	33.3%	benign(0.221)	tolerated(0.17)	neutral(0.081)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7669750	7669750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.I1209T	1.000	84	0%	53	26.4%	1	100%	possibly_damaging(0.706)	deleterious(0.01)	deleterious(0.659)	NULL
CHD3	1107	genome.wustl.edu	37	17	7803251	7803251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.S920L	1.000	254	0%	164	29.9%	104	40.3%	probably_damaging(0.998)	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ALOX15B	247	genome.wustl.edu	37	17	7945809	7945809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141.2	+1	reviewed	p.A191V	0.002	104	0%	69	30.4%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	superfamily_Lipoxigenase
ALOX15B	247	genome.wustl.edu	37	17	7948885	7948885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141.2	+1	reviewed	p.R361C	0.552	91	0%	66	39.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipoxygenase,superfamily_Lipoxigenase
ALOXE3	59344	genome.wustl.edu	37	17	8017891	8017891	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021628.2	-1	reviewed	p.K197N	0.120	189	0%	164	14.6%	0	-	probably_damaging(0.962)	tolerated(0.24)	neutral(0.443)	superfamily_Lipoxygenase
MYH4	4622	genome.wustl.edu	37	17	10358986	10358986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.R707C	1.000	228	0%	151	13.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10367852	10367852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.Y195*	1.000	267	0%	228	28.1%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10432497	10432497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.K1112N	1.000	237	0%	201	11.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Myosin_tail_1
DNAH9	1770	genome.wustl.edu	37	17	11687836	11687836	+	Missense_Mutation	SNP	G	G	T	rs145103593		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.D2681Y	1.000	222	0%	192	17.7%	4	25%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	superfamily_P-loop containing nucleoside triphosphate hydrolases
COX10	1352	genome.wustl.edu	37	17	14110263	14110263	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001303.3	+1	reviewed	p.R355	0.940	42	0%	36	30.6%	11	18.1%	-	-	-	HMMPfam_UbiA
ZNF624	57547	genome.wustl.edu	37	17	16526845	16526845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020787.2	-1	validated	p.S452Y	0.273	140	0%	152	13.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCDC144A	9720	genome.wustl.edu	37	17	16638388	16638388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014695.1	+1	provisional	p.D935Y	0.998	94	0%	87	21.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
LGALS9C	654346	genome.wustl.edu	37	17	18396152	18396152	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040078.2	+1	validated	p.F301	0.417	121	0%	107	21.5%	0	-	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
LOC645139	645139	genome.wustl.edu	37	17	18554468	18554468	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928169.3	+1	model	p.N360	0.997	543	0.2%	423	29.1%	10	0%	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
CCDC144C	348254	genome.wustl.edu	37	17	20297498	20297498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425519	+1	known	p.R1161I	0.051	132	0%	121	36.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CCDC144NL	339184	genome.wustl.edu	37	17	20768755	20768755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004306.1	-1	provisional	p.K213N	0.011	454	0%	441	15%	0	-	unknown(0)	-	-	NULL
SPAG5	10615	genome.wustl.edu	37	17	26905507	26905507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006461.3	-1	reviewed	p.R1080W	1.000	78	0%	87	32.2%	25	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIPOX	51268	genome.wustl.edu	37	17	27380440	27380440	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016518.2	+1	validated	p.R163*	0.848	202	0%	179	36.9%	1	0%	-	-	-	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
TAOK1	57551	genome.wustl.edu	37	17	27837990	27837990	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020791.1	+1	validated	p.R562*	1.000	70	0%	105	20%	1	0%	-	-	-	superfamily_Protein kinase-like (PK-like)
SSH2	85464	genome.wustl.edu	37	17	27959880	27959880	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033389.2	-1	reviewed	p.E751*	1.000	160	0%	131	29.8%	1	100%	-	-	-	NULL
EFCAB5	374786	genome.wustl.edu	37	17	28380531	28380531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198529.3	+1	validated	p.R520I	0.003	275	0%	268	17.5%	0	-	probably_damaging(0.976)	tolerated(0.29)	neutral(0.447)	superfamily_EF-hand
ZNF207	7756	genome.wustl.edu	37	17	30685615	30685615	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098507.1	+1	validated	p.K88Q	1.000	154	0%	165	27.3%	41	34.1%	possibly_damaging(0.947)	deleterious(0.04)	deleterious(0.740)	NULL
TMEM132E	124842	genome.wustl.edu	37	17	32959819	32959819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207313.1	+1	provisional	p.P437S	1.000	92	0%	75	21.3%	0	-	probably_damaging(0.998)	tolerated(0.89)	deleterious(0.474)	NULL
CCT6B	10693	genome.wustl.edu	37	17	33267573	33267573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006584.2	-1	reviewed	p.R318I	1.000	121	0%	133	22.6%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
CCT6B	10693	genome.wustl.edu	37	17	33269644	33269644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006584.2	-1	reviewed	p.F248L	1.000	183	0%	240	33.3%	0	-	benign(0.095)	deleterious(0.02)	neutral(0.390)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
SLFN11	91607	genome.wustl.edu	37	17	33690215	33690215	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104587.1	-1	validated	p.I204	0.000	145	0%	132	11.4%	3	0%	-	-	-	NULL
SLFN14	342618	genome.wustl.edu	37	17	33879893	33879893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129820.1	-1	provisional	p.R587H	0.915	116	0%	103	26.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLFN14	342618	genome.wustl.edu	37	17	33884268	33884268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129820.1	-1	provisional	p.E272K	0.987	316	0%	340	21.2%	0	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_AAA_4
ACACA	31	genome.wustl.edu	37	17	35518873	35518873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.R1724Q	1.000	181	0%	142	30.3%	7	57.1%	benign(0)	tolerated(0.89)	-	HMMPfam_Carboxyl_trans,superfamily_SSF52096
TADA2A	6871	genome.wustl.edu	37	17	35800760	35800760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001488.3	+1	reviewed	p.H147N	1.000	107	0%	89	19.1%	17	29.4%	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
ENSG00000224974	0	genome.wustl.edu	37	17	36233854	36233854	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432091	-1	known	p.L6V	1.000	121	0%	139	25.2%	1	100%	-	-	-	HMMSmart_14_3_3
C17orf98	388381	genome.wustl.edu	37	17	36993443	36993443	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080465.2	-1	validated	p.I86	1.000	284	0.4%	230	20%	0	-	-	-	-	NULL
KRT25	147183	genome.wustl.edu	37	17	38907296	38907296	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181534.3	-1	reviewed	p.V289	0.023	209	0%	189	30.2%	0	-	-	-	-	HMMPfam_Filament
KRT28	162605	genome.wustl.edu	37	17	38956032	38956032	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181535.3	-1	reviewed	p.G38	0.011	75	0%	55	16.4%	0	-	-	-	-	NULL
KRTAP9-7	100505724	genome.wustl.edu	37	17	39432311	39432311	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391354	+1	known	p.V121G	0.004	122	0%	91	23.1%	0	-	possibly_damaging(0.951)	tolerated(0.1)	deleterious(0.680)	HMMPfam_Keratin_B2
KRT15	3866	genome.wustl.edu	37	17	39673187	39673187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002275.3	-1	reviewed	p.G204D	0.981	141	0%	116	19.8%	8	25%	benign(0.124)	deleterious(0.04)	neutral(0.359)	HMMPfam_Filament
KRT16	3868	genome.wustl.edu	37	17	39767449	39767449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005557.3	-1	reviewed	p.D269N	0.899	97	0%	70	12.9%	14	7.1%	probably_damaging(0.959)	tolerated(0.69)	neutral(0.405)	HMMPfam_Filament
CNTNAP1	8506	genome.wustl.edu	37	17	40839788	40839788	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003632.2	+1	reviewed	p.F365	0.998	186	0%	143	26.6%	1	0%	-	-	-	superfamily_ConA_like_lec_gl
AOC2	314	genome.wustl.edu	37	17	41001198	41001198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_009590.2	+1	reviewed	p.R562W	0.065	63	0%	43	16.3%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
ETV4	2118	genome.wustl.edu	37	17	41607307	41607307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079675.1	-1	validated	p.E300D	0.996	126	0%	127	32.3%	2	0%	benign(0.004)	tolerated(0.48)	neutral(0.011)	HMMPfam_ETS_PEA3_N
MPP3	4356	genome.wustl.edu	37	17	41908677	41908677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001932.3	-1	reviewed	p.L53I	1.000	95	0%	69	10.1%	0	-	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	HMMSmart_SM00569,HMMPfam_L27
CD300LG	146894	genome.wustl.edu	37	17	41925945	41925945	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145273.3	+1	validated	p.G21	0.006	21	0%	33	54.5%	0	-	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
HDAC5	10014	genome.wustl.edu	37	17	42162445	42162445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015053.1	-1	reviewed	p.R711Q	1.000	39	0%	34	23.5%	71	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
KIF18B	146909	genome.wustl.edu	37	17	43011894	43011894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080443.1	-1	provisional	p.R223H	1.000	98	0%	80	26.3%	8	37.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDC27	996	genome.wustl.edu	37	17	45214585	45214585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114091.1	-1	reviewed	p.E622*	1.000	127	0%	158	17.1%	3	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
KAT7	11143	genome.wustl.edu	37	17	47875883	47875883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007067.3	+1	provisional	p.F181L	1.000	95	0%	70	18.6%	13	38.4%	benign(0.006)	tolerated(0.51)	neutral(0.009)	superfamily_CCHHC domain
KAT7	11143	genome.wustl.edu	37	17	47888896	47888896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007067.3	+1	provisional	p.R271I	1.000	282	0%	237	34.6%	7	57.1%	possibly_damaging(0.585)	deleterious(0.02)	deleterious(0.585)	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48681624	48681624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018896.3	+1	validated	p.F1426	0.997	284	0%	239	36%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
EPX	8288	genome.wustl.edu	37	17	56281654	56281654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000502.4	+1	reviewed	p.R673Q	1.000	98	0%	81	17.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
BZRAP1	9256	genome.wustl.edu	37	17	56388998	56388998	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.I1005	0.249	46	0%	31	12.9%	3	0%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
BZRAP1	9256	genome.wustl.edu	37	17	56400068	56400068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.R422C	0.998	47	4.3%	39	35.9%	1	100%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
TEX14	56155	genome.wustl.edu	37	17	56649392	56649392	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198393.2	-1	reviewed	p.E1243*	0.567	114	0%	93	35.5%	0	-	-	-	-	NULL
SMG8	55181	genome.wustl.edu	37	17	57288864	57288864	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018149.6	+1	validated	p.V484	0.978	106	0%	117	21.4%	0	-	-	-	-	HMMPfam_DUF2146
VMP1	81671	genome.wustl.edu	37	17	57895091	57895091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030938.3	+1	validated	p.T311A	1.000	129	0.8%	179	26.3%	1	0%	benign(0)	tolerated(1)	-	NULL
RNFT1	51136	genome.wustl.edu	37	17	58033868	58033868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016125.3	-1	validated	p.R351Q	0.023	160	0%	203	27.6%	2	50%	benign(0.038)	tolerated(0.44)	neutral(0.015)	NULL
USP32	84669	genome.wustl.edu	37	17	58262937	58262937	+	Missense_Mutation	SNP	G	G	A	rs189554280	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032582.3	-1	validated	p.R1240C	1.000	195	0.5%	159	12.6%	12	8.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_SSF54001
PPM1D	8493	genome.wustl.edu	37	17	58740668	58740668	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003620.2	+1	reviewed	p.E525*	1.000	76	0%	91	14.3%	1	0%	-	-	-	NULL
BRIP1	83990	genome.wustl.edu	37	17	59760793	59760793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032043.1	-1	reviewed	p.K1205R	0.036	186	0.5%	207	22.2%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
INTS2	57508	genome.wustl.edu	37	17	60003864	60003864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020748.2	-1	validated	p.A56S	1.000	95	0%	112	33%	3	0%	benign(0.012)	tolerated(1)	neutral(0.001)	NULL
MED13	9969	genome.wustl.edu	37	17	60060341	60060341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005121.2	-1	reviewed	p.R1008Q	1.000	137	0%	121	21.5%	7	57.1%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
TANC2	26115	genome.wustl.edu	37	17	61391833	61391833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.F341S	1.000	242	0%	198	22.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SCN4A	6329	genome.wustl.edu	37	17	62041083	62041083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.A519T	0.998	66	0%	36	33.3%	0	-	benign(0.007)	tolerated(0.4)	neutral(0.016)	NULL
TEX2	55852	genome.wustl.edu	37	17	62272409	62272409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018469.3	-1	validated	p.A564V	1.000	200	0%	243	26.3%	3	0%	probably_damaging(0.964)	tolerated(1)	neutral(0.406)	HMMSmart_PH
LRRC37A3	374819	genome.wustl.edu	37	17	62857072	62857072	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199340.2	-1	provisional	p.G1064	0.000	255	0%	216	29.6%	6	16.6%	-	-	-	NULL
ABCA9	10350	genome.wustl.edu	37	17	67014666	67014666	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080283.3	-1	reviewed	p.Y885	0.000	160	0%	134	16.4%	0	-	-	-	-	NULL
ABCA9	10350	genome.wustl.edu	37	17	67025314	67025314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080283.3	-1	reviewed	p.L500F	0.956	130	0%	124	14.5%	0	-	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA6	23460	genome.wustl.edu	37	17	67111057	67111057	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080284.2	-1	reviewed	p.K543T	1.000	165	0%	154	13.6%	0	-	benign(0.003)	tolerated(0.23)	neutral(0.042)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA10	10349	genome.wustl.edu	37	17	67170447	67170447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080282.3	-1	reviewed	p.G1046D	0.235	125	0%	130	25.4%	0	-	benign(0.032)	tolerated(0.34)	neutral(0.025)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67247996	67247996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018672.3	-1	reviewed	p.R1476Q	1.000	115	0%	132	25.8%	4	25%	probably_damaging(0.977)	tolerated(0.43)	neutral(0.432)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNJ16	3773	genome.wustl.edu	37	17	68129135	68129135	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018658.1	+1	reviewed	p.E303*	1.000	105	0%	89	12.4%	0	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
KCNJ2	3759	genome.wustl.edu	37	17	68171717	68171717	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000891.2	+1	reviewed	p.V179	1.000	251	0.4%	179	37.4%	3	0%	-	-	-	HMMPfam_IRK,superfamily_E set domains,superfamily_Voltage-gated potassium channels
C17orf80	55028	genome.wustl.edu	37	17	71232864	71232864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017941.4	+1	validated	p.P415S	0.001	96	0%	95	15.8%	4	25%	benign(0.013)	tolerated(0.5)	neutral(0.011)	NULL
DNAI2	64446	genome.wustl.edu	37	17	72278044	72278044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023036.4	+1	reviewed	p.D30N	1.000	54	0%	34	29.4%	38	42.1%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
KIF19	124602	genome.wustl.edu	37	17	72342624	72342624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153209.3	+1	validated	p.Y295	0.949	57	0%	48	14.6%	37	40.5%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
MFSD11	79157	genome.wustl.edu	37	17	74774424	74774424	+	Missense_Mutation	SNP	G	G	A	rs192554610	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024311.2	+1	provisional	p.R447Q	0.997	234	0%	200	24%	8	37.5%	benign(0.374)	tolerated(0.17)	neutral(0.178)	NULL
ENGASE	64772	genome.wustl.edu	37	17	77075629	77075629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042573.1	+1	validated	p.D159N	1.000	106	0%	95	23.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_85
GAA	2548	genome.wustl.edu	37	17	78092148	78092148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000152.3	+1	reviewed	p.A880T	1.000	64	0%	50	28%	137	20.4%	probably_damaging(0.981)	tolerated(0.17)	deleterious(0.484)	NULL
RNF213	57674	genome.wustl.edu	37	17	78307927	78307927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.R1389H	0.000	102	0%	77	14.3%	11	9%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
RNF213	57674	genome.wustl.edu	37	17	78337501	78337501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.K3887N	0.971	38	2.6%	19	36.8%	36	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RPTOR	57521	genome.wustl.edu	37	17	78796930	78796930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020761.2	+1	reviewed	p.R348Q	0.998	230	0%	216	31%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NPLOC4	55666	genome.wustl.edu	37	17	79526380	79526380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017921.2	-1	validated	p.T578A	0.000	23	0%	26	26.9%	92	32.6%	benign(0)	tolerated(1)	-	superfamily_NZF domain
ENSG00000215726	0	genome.wustl.edu	37	18	697167	697167	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508278	+1	novel	NULL	0.001	83	0%	72	26.4%	0	-	-	-	-	-
MYOM1	8736	genome.wustl.edu	37	18	3102488	3102488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.E1187K	1.000	162	0.6%	127	24.4%	0	-	benign(0.122)	tolerated(0.34)	neutral(0.033)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PIEZO2	63895	genome.wustl.edu	37	18	10680225	10680225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503781	-1	known	p.F422L	1.000	281	0%	335	15.8%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	NULL
ZNF519	162655	genome.wustl.edu	37	18	14106149	14106149	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145287.3	-1	validated	p.F130	0.000	156	0%	172	12.2%	0	-	-	-	-	NULL
POTEC	388468	genome.wustl.edu	37	18	14530553	14530553	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137671.1	-1	validated	e6-1	0.015	128	0%	166	13.3%	0	-	-	-	-	-
CABLES1	91768	genome.wustl.edu	37	18	20815911	20815911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100619.2	+1	validated	p.R413I	1.000	347	0%	258	20.9%	17	23.5%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
RIOK3	8780	genome.wustl.edu	37	18	21044055	21044055	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003831.3	+1	reviewed	p.K102Q	1.000	326	0%	302	23.2%	8	50%	possibly_damaging(0.95)	tolerated(0.18)	neutral(0.450)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21329415	21329415	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198129.1	+1	reviewed	p.E197*	0.998	191	0.5%	169	32.5%	0	-	-	-	-	HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like
TTC39C	125488	genome.wustl.edu	37	18	21660643	21660643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135993.1	+1	validated	p.K185N	1.000	201	0%	175	25.1%	3	0%	benign(0.13)	tolerated(0.18)	neutral(0.067)	HMMPfam_Deme6
IMPACT	55364	genome.wustl.edu	37	18	22007965	22007965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018439.3	+1	validated	p.R40I	1.000	333	0%	299	17.7%	4	0%	benign(0.322)	deleterious(0.01)	deleterious(0.507)	HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like
HRH4	59340	genome.wustl.edu	37	18	22056740	22056740	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021624.3	+1	reviewed	p.V129	0.000	380	0%	325	11.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF521	25925	genome.wustl.edu	37	18	22671956	22671956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015461.2	-1	validated	p.E1250K	1.000	253	0%	232	10.8%	3	0%	possibly_damaging(0.928)	tolerated(0.12)	deleterious(0.636)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31324930	31324930	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030632.1	+1	provisional	p.Q1706	0.010	102	0%	62	33.9%	0	-	-	-	-	NULL
DTNA	1837	genome.wustl.edu	37	18	32345948	32345948	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001390.4	+1	reviewed	p.R31*	1.000	127	0%	130	29.2%	0	-	-	-	-	HMMPfam_efhand_1,superfamily_EF-hand
MAPRE2	10982	genome.wustl.edu	37	18	32720380	32720380	+	RNA	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026570.1	+1	reviewed	NULL	1.000	75	1.3%	55	29.1%	6	0%	-	-	-	-
ZNF397	84307	genome.wustl.edu	37	18	32822582	32822582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135178.2	+1	reviewed	p.R50C	1.000	62	0%	68	27.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SCAN,HMMSmart_SM00431
ZNF24	7572	genome.wustl.edu	37	18	32917280	32917280	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006965.2	-1	validated	p.G341	1.000	175	0%	207	28%	5	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GALNT1	2589	genome.wustl.edu	37	18	33269245	33269245	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020474.3	+1	reviewed	p.I323M	0.997	164	0.6%	194	38.1%	38	60.5%	benign(0)	tolerated(0.98)	-	superfamily_Nucleotide-diphospho-sugar transferases
MOCOS	55034	genome.wustl.edu	37	18	33785150	33785150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017947.2	+1	validated	p.D377N	0.995	194	0%	170	32.4%	4	50%	benign(0.008)	tolerated(0.3)	neutral(0.029)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
EPG5	57724	genome.wustl.edu	37	18	43505847	43505847	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020964.2	-1	validated	p.E859*	1.000	146	0%	138	26.8%	0	-	-	-	-	NULL
KATNAL2	83473	genome.wustl.edu	37	18	44595965	44595965	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031303.2	+1	validated	p.L262	0.886	138	0%	103	10.7%	7	28.5%	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
CCDC11	220136	genome.wustl.edu	37	18	47753754	47753754	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145020.3	-1	validated	p.P514	0.000	242	0.4%	213	17.8%	13	23%	-	-	-	NULL
SKA1	220134	genome.wustl.edu	37	18	47911709	47911709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039535.2	+1	validated	p.F145L	0.018	230	0%	216	16.2%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF1395
ALPK2	115701	genome.wustl.edu	37	18	56246925	56246925	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.D361	1.000	182	0%	126	18.3%	0	-	-	-	-	NULL
PIGN	23556	genome.wustl.edu	37	18	59772809	59772809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012327.5	-1	reviewed	p.P609L	1.000	115	0%	96	10.4%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PigN
SERPINB3	6317	genome.wustl.edu	37	18	61325785	61325785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006919.2	-1	validated	p.R144Q	0.015	445	0%	490	19.4%	0	-	benign(0.149)	deleterious(0.05)	neutral(0.358)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
DSEL	92126	genome.wustl.edu	37	18	65178587	65178587	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032160.2	-1	validated	p.E1097*	1.000	66	0%	68	32.4%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DSEL	92126	genome.wustl.edu	37	18	65180854	65180854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032160.2	-1	validated	p.D341A	1.000	141	0%	131	14.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CBLN2	147381	genome.wustl.edu	37	18	70205991	70205991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182511.3	-1	validated	p.G125D	1.000	219	0%	160	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
NETO1	81832	genome.wustl.edu	37	18	70526220	70526220	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138966.2	-1	reviewed	p.R104*	1.000	204	0%	184	35.3%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZNF407	55628	genome.wustl.edu	37	18	72347213	72347213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017757.2	+1	reviewed	p.R1413Q	0.142	171	0%	148	29.1%	1	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_C2H2 and C2HC zinc fingers
ZNF236	7776	genome.wustl.edu	37	18	74616384	74616384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007345.3	+1	validated	p.N646T	1.000	287	0%	242	21.5%	1	100%	benign(0.024)	tolerated(0.55)	neutral(0.008)	NULL
ADNP2	22850	genome.wustl.edu	37	18	77895914	77895914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014913.3	+1	validated	p.R873Q	0.000	52	0%	37	13.5%	41	4.8%	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
MUM1	84939	genome.wustl.edu	37	19	1357055	1357055	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032853.3	+1	validated	p.E36D	0.023	510	0%	503	34.2%	1	100%	benign(0.414)	tolerated(0.32)	neutral(0.158)	NULL
IZUMO4	113177	genome.wustl.edu	37	19	2097157	2097157	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039846.1	+1	validated	p.K71	0.999	30	0%	25	24%	7	0%	-	-	-	NULL
TJP3	27134	genome.wustl.edu	37	19	3748047	3748047	+	Missense_Mutation	SNP	C	C	T	rs182553957	by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014428.1	+1	provisional	p.R893C	0.248	11	0%	13	61.5%	52	48%	possibly_damaging(0.532)	deleterious(0.01)	deleterious(0.586)	NULL
EEF2	1938	genome.wustl.edu	37	19	3976737	3976737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001961.3	-1	reviewed	p.A798T	1.000	37	0%	17	23.5%	5444	29.6%	benign(0.017)	tolerated(0.14)	neutral(0.250)	HMMPfam_EFG_C,superfamily_EF-G C-terminal domain-like
FSD1	79187	genome.wustl.edu	37	19	4306197	4306197	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024333.2	+1	reviewed	p.A38	0.051	51	0%	38	15.8%	2	0%	-	-	-	HMMSmart_BBC
DENND1C	79958	genome.wustl.edu	37	19	6477127	6477127	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024898.2	-1	validated	p.F175	1.000	48	0%	63	19%	1	0%	-	-	-	HMMPfam_DENN,HMMSmart_DENN
C3	718	genome.wustl.edu	37	19	6692943	6692943	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.E1128*	1.000	115	0%	123	21.1%	352	0.8%	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
ZNF557	79230	genome.wustl.edu	37	19	7081448	7081448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044387.1	+1	validated	p.L109I	0.004	139	0%	140	32.1%	1	0%	benign(0.019)	tolerated(0.49)	neutral(0.011)	NULL
FCER2	2208	genome.wustl.edu	37	19	7755382	7755382	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002002.4	-1	validated	p.F177	0.960	78	0%	44	25%	1	0%	-	-	-	HMMSmart_SM00034,superfamily_C-type lectin-like
CD209	30835	genome.wustl.edu	37	19	7806673	7806673	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026692.1	-1	reviewed	NULL	1.000	55	0%	74	21.6%	0	-	-	-	-	-
MUC16	94025	genome.wustl.edu	37	19	9063714	9063714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.P7911H	0.000	532	0.2%	387	31%	4	50%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9074387	9074387	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.I4353	0.000	276	0%	233	33.5%	6	33.3%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9086311	9086311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.L1835R	0.002	194	0%	172	19.2%	0	-	unknown(0)	-	-	NULL
OR7G1	125962	genome.wustl.edu	37	19	9225792	9225792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005192.1	-1	provisional	p.F216L	0.007	113	0%	85	20%	0	-	benign(0.155)	tolerated(0.36)	neutral(0.034)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7G1	125962	genome.wustl.edu	37	19	9225897	9225897	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005192.1	-1	provisional	p.V181	0.000	112	0%	111	31.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7G3	390883	genome.wustl.edu	37	19	9237021	9237021	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001958.1	-1	provisional	p.V202	0.000	73	0%	55	12.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR7D2	162998	genome.wustl.edu	37	19	9297203	9297203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175883.1	+1	provisional	p.S249F	0.030	82	1.2%	93	37.6%	0	-	benign(0.042)	tolerated(0.08)	neutral(0.302)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF559	84527	genome.wustl.edu	37	19	9453298	9453298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032497.1	+1	provisional	p.I391V	0.044	86	0%	73	11%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577764	9577764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152476.2	-1	validated	p.R620Q	0.000	225	0%	231	32.5%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF561	93134	genome.wustl.edu	37	19	9721251	9721251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152289.2	-1	validated	p.K362N	1.000	272	0%	262	35.9%	13	69.2%	benign(0.002)	deleterious(0)	neutral(0.445)	superfamily_SSF57667
ZNF812	729648	genome.wustl.edu	37	19	9801205	9801205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726949.2	-1	model	p.R252Q	0.010	348	0.3%	261	21.1%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF812	729648	genome.wustl.edu	37	19	9801609	9801609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726949.2	-1	model	p.E117D	0.682	104	0%	101	41.6%	0	-	benign(0.066)	tolerated(0.06)	neutral(0.327)	superfamily_C2H2 and C2HC zinc fingers
DNMT1	1786	genome.wustl.edu	37	19	10265276	10265276	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130823.1	-1	reviewed	p.V606	1.000	50	2%	45	33.3%	81	37%	-	-	-	NULL
ZNF491	126069	genome.wustl.edu	37	19	11917104	11917104	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152356.3	+1	validated	p.F112	0.665	119	0%	114	23.7%	0	-	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF491	126069	genome.wustl.edu	37	19	11917556	11917556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152356.3	+1	validated	p.R263I	0.998	108	0%	125	32%	0	-	benign(0.049)	tolerated(0.08)	neutral(0.303)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF788	388507	genome.wustl.edu	37	19	12222110	12222110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430298	+1	known	p.E60D	0.000	90	0%	87	26.4%	0	-	possibly_damaging(0.478)	tolerated(0.12)	neutral(0.418)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF136	7695	genome.wustl.edu	37	19	12298195	12298195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003437.2	+1	validated	p.K334N	0.990	158	0%	124	11.3%	5	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF57667
ZNF799	90576	genome.wustl.edu	37	19	12502070	12502070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080821.1	-1	validated	p.R381Q	0.000	304	0%	303	28.7%	3	66.6%	probably_damaging(1)	tolerated(0.94)	deleterious(0.500)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CYP4F2	8529	genome.wustl.edu	37	19	16001217	16001217	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082.3	-1	reviewed	p.E184	0.099	149	0%	121	17.4%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F11	57834	genome.wustl.edu	37	19	16032884	16032884	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128932.1	-1	reviewed	p.E360*	0.808	218	0%	198	28.8%	4	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F11	57834	genome.wustl.edu	37	19	16038052	16038052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128932.1	-1	reviewed	p.K165N	0.988	137	0%	138	11.6%	4	0%	benign(0.109)	tolerated(0.07)	neutral(0.328)	HMMPfam_p450,superfamily_Cytochrome P450
ANO8	57719	genome.wustl.edu	37	19	17444521	17444521	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020959.2	-1	validated	p.C65	0.994	27	0%	23	17.4%	62	38.7%	-	-	-	NULL
RFXANK	8625	genome.wustl.edu	37	19	19312471	19312471	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003721.2	+1	reviewed	p.I242	0.699	66	0%	57	36.8%	338	37.5%	-	-	-	HMMSmart_SM00248,superfamily_Ankyrin repeat
ZNF101	94039	genome.wustl.edu	37	19	19790703	19790703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033204.2	+1	provisional	p.R302I	0.220	72	0%	70	22.9%	0	-	benign(0.076)	tolerated(0.08)	neutral(0.305)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF14	7561	genome.wustl.edu	37	19	19822466	19822466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021030.2	-1	reviewed	p.R542C	0.004	123	0%	100	27%	1	0%	benign(0.007)	tolerated(0.21)	neutral(0.044)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF506	440515	genome.wustl.edu	37	19	19905509	19905509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099269.2	-1	validated	p.P396L	0.983	174	0%	139	20.1%	1	0%	possibly_damaging(0.785)	deleterious(0.04)	deleterious(0.643)	superfamily_SSF57667
ZNF429	353088	genome.wustl.edu	37	19	21720354	21720354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001415.2	+1	provisional	p.K500T	0.941	50	0%	45	31.1%	1	0%	possibly_damaging(0.851)	deleterious(0.01)	deleterious(0.733)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157113	22157113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.F241L	0.000	47	0%	61	14.8%	0	-	benign(0.002)	tolerated(0.66)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF257	113835	genome.wustl.edu	37	19	22271062	22271062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033468.2	+1	provisional	p.K170N	0.002	189	0%	185	28.1%	0	-	possibly_damaging(0.589)	tolerated(0.14)	neutral(0.453)	superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22498979	22498979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.F787L	0.000	40	0%	43	25.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574542	22574542	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098626.1	-1	validated	p.F499V	0.429	74	0%	78	19.2%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF730	100129543	genome.wustl.edu	37	19	23328352	23328352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719792.2	+1	model	p.S211L	0.004	61	0%	85	28.2%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23543607	23543607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003430.2	-1	validated	p.R725Q	0.000	93	0%	113	11.5%	0	-	possibly_damaging(0.628)	tolerated(0.35)	neutral(0.239)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23836388	23836388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138330.2	-1	validated	p.K449N	1.000	109	0%	95	18.9%	1	0%	benign(0.055)	deleterious(0)	neutral(0.448)	superfamily_C2H2 and C2HC zinc fingers
ENSG00000104777	0	genome.wustl.edu	37	19	24102077	24102077	+	RNA	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300996	-1	known	NULL	0.018	76	0%	92	16.3%	0	-	-	-	-	-
ENSG00000104777	0	genome.wustl.edu	37	19	24102355	24102355	+	RNA	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300996	-1	known	NULL	0.003	39	0%	72	19.4%	0	-	-	-	-	-
WDR88	126248	genome.wustl.edu	37	19	33655169	33655169	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173479.3	+1	validated	p.K383*	1.000	366	0%	299	29.8%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
CHST8	64377	genome.wustl.edu	37	19	34263906	34263906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127895.1	+1	validated	p.D405N	1.000	61	0%	31	32.3%	0	-	possibly_damaging(0.62)	tolerated(0.2)	neutral(0.265)	HMMPfam_Sulfotransfer_2
KIAA0355	9710	genome.wustl.edu	37	19	34832561	34832561	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014686.3	+1	validated	p.S574	0.554	181	0%	146	21.9%	5	40%	-	-	-	NULL
ZNF599	148103	genome.wustl.edu	37	19	35250250	35250250	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007248.2	-1	validated	p.K486Q	1.000	187	0%	223	20.6%	1	0%	benign(0.151)	deleterious(0)	neutral(0.458)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35449483	35449483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175872.4	-1	validated	p.E426K	0.446	195	0%	122	33.6%	2	50%	possibly_damaging(0.931)	tolerated(0.11)	deleterious(0.649)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WDR62	284403	genome.wustl.edu	37	19	36590454	36590454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.E892K	0.011	29	0%	34	29.4%	1	0%	benign(0.052)	tolerated(0.65)	neutral(0.006)	NULL
ZFP14	57677	genome.wustl.edu	37	19	36832405	36832405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020917.1	-1	provisional	p.R108I	0.590	100	0%	121	16.5%	0	-	benign(0.035)	tolerated(0.24)	neutral(0.040)	NULL
ZNF382	84911	genome.wustl.edu	37	19	37117864	37117864	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032825.3	+1	validated	p.I355	0.000	73	0%	65	23.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF345	25850	genome.wustl.edu	37	19	37369179	37369179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003419.3	+1	provisional	p.E483K	0.005	24	0%	19	42.1%	0	-	benign(0.005)	tolerated(0.18)	neutral(0.056)	superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37677843	37677843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152279.3	-1	validated	p.S199L	0.000	284	0%	277	34.7%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF383	163087	genome.wustl.edu	37	19	37734379	37734379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152604.1	+1	provisional	p.R414I	1.000	140	0%	147	14.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF781	163115	genome.wustl.edu	37	19	38160221	38160221	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152605.3	-1	validated	p.E277*	0.970	238	0%	211	35.5%	0	-	-	-	-	NULL
WDR87	83889	genome.wustl.edu	37	19	38384338	38384338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.L630F	0.998	69	0%	68	32.4%	0	-	probably_damaging(0.998)	-	-	superfamily_WD40 repeat-like
SIPA1L3	23094	genome.wustl.edu	37	19	38579377	38579377	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015073.1	+1	validated	p.F517	0.998	112	0%	98	23.5%	20	35%	-	-	-	superfamily_SSF111347
EID2	163126	genome.wustl.edu	37	19	40030251	40030251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153232.3	-1	validated	p.L157I	0.996	100	0%	93	10.8%	13	7.6%	possibly_damaging(0.945)	tolerated(0.36)	neutral(0.410)	NULL
ZNF780A	284323	genome.wustl.edu	37	19	40580955	40580955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142577.1	-1	validated	p.R466Q	0.005	231	0%	240	27.1%	1	0%	benign(0.08)	tolerated(0.13)	neutral(0.258)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LTBP4	8425	genome.wustl.edu	37	19	41111046	41111046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000308370	+1	known	p.G186V	0.009	36	0%	27	29.6%	6	16.6%	benign(0.328)	deleterious(0)	deleterious(0.547)	superfamily_SSF57196
LTBP4	8425	genome.wustl.edu	37	19	41133070	41133070	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042544.1	+1	reviewed	p.S1459L	0.894	51	0%	44	18.2%	24	0%	-	-	-	NULL
CYP2B7P1	1556	genome.wustl.edu	37	19	41442006	41442006	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_001278.1	+1	provisional	NULL	0.000	115	0%	104	38.5%	0	-	benign(0.272)	tolerated(0.19)	neutral(0.079)	-
CYP2F1	1572	genome.wustl.edu	37	19	41627442	41627442	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000774.3	+1	reviewed	p.F188	1.000	103	0%	75	17.3%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
HNRNPUL1	11100	genome.wustl.edu	37	19	41778079	41778079	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007040.3	+1	reviewed	p.R171*	1.000	104	0%	121	18.2%	21	0%	-	-	-	NULL
CEACAM4	1089	genome.wustl.edu	37	19	42126053	42126053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001817.2	-1	validated	p.P220L	0.002	78	0%	68	20.6%	0	-	possibly_damaging(0.824)	deleterious(0)	deleterious(0.756)	NULL
PSG11	5680	genome.wustl.edu	37	19	43519485	43519485	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002785.2	-1	validated	p.T249	0.001	129	0%	135	36.3%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
ZNF233	353355	genome.wustl.edu	37	19	44778622	44778622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181756.1	+1	provisional	p.W603C	0.000	194	0%	174	28.2%	0	-	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PVR	5817	genome.wustl.edu	37	19	45150779	45150779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006505.3	+1	reviewed	p.T122P	0.991	52	1.9%	38	13.2%	35	2.8%	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
APOC1	341	genome.wustl.edu	37	19	45422440	45422440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001645.3	+1	reviewed	p.S69P	0.000	84	0%	55	25.5%	83	2.4%	possibly_damaging(0.913)	deleterious(0.01)	deleterious(0.770)	HMMPfam_ApoC-I
EXOC3L2	90332	genome.wustl.edu	37	19	45728068	45728068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138568.3	-1	validated	p.V170I	0.226	35	0%	23	30.4%	5	0%	benign(0.009)	tolerated(0.86)	neutral(0.001)	HMMPfam_Sec6
PPP1R13L	10848	genome.wustl.edu	37	19	45888875	45888875	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142502.1	-1	validated	p.F731	0.989	18	0%	14	50%	178	30.8%	-	-	-	superfamily_Ankyrin repeat
PPP1R13L	10848	genome.wustl.edu	37	19	45889209	45889209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142502.1	-1	validated	p.D652N	1.000	62	0%	46	19.6%	67	47.7%	unknown(0)	tolerated(0.13)	-	superfamily_Ankyrin repeat
ARHGAP35	2909	genome.wustl.edu	37	19	47424921	47424921	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.R997*	1.000	52	0%	56	41.1%	5	0%	-	-	-	NULL
CABP5	56344	genome.wustl.edu	37	19	48543866	48543866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019855.3	-1	reviewed	p.M78I	1.000	79	0%	60	23.3%	0	-	benign(0.053)	tolerated(0.31)	neutral(0.030)	superfamily_SSF47473
SLC17A7	57030	genome.wustl.edu	37	19	49936215	49936215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020309.3	-1	reviewed	p.K290N	1.000	37	0%	29	17.2%	1	100%	possibly_damaging(0.49)	tolerated(0.17)	neutral(0.222)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
CPT1C	126129	genome.wustl.edu	37	19	50200582	50200582	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152359.1	+1	provisional	e2-1	1.000	182	0%	139	30.2%	0	-	-	-	-	-
KLK15	55554	genome.wustl.edu	37	19	51330241	51330241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017509.2	-1	reviewed	p.A125V	0.378	11	0%	19	36.8%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK8	11202	genome.wustl.edu	37	19	51503732	51503732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144505.1	-1	reviewed	p.G105S	1.000	35	0%	28	14.3%	11	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
KLK11	11012	genome.wustl.edu	37	19	51525871	51525871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144947.1	-1	reviewed	p.R260Q	0.000	196	0%	139	37.4%	45	44.4%	benign(0.051)	tolerated(0.29)	neutral(0.032)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZNF649	65251	genome.wustl.edu	37	19	52394192	52394192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023074.3	-1	validated	p.E399D	1.000	154	0%	110	19.1%	5	40%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52496734	52496734	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391793	-1	known	e5+2	0.025	212	0.5%	177	23.7%	2	100%	-	-	-	-
ZNF841	284371	genome.wustl.edu	37	19	52568641	52568641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136499.1	-1	validated	p.E832K	0.000	143	0%	172	20.9%	3	0%	possibly_damaging(0.647)	tolerated(0.34)	neutral(0.250)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52568679	52568679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136499.1	-1	validated	p.K819R	0.760	100	0%	127	25.2%	2	0%	possibly_damaging(0.883)	deleterious(0.03)	deleterious(0.710)	superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52569857	52569857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136499.1	-1	validated	p.K426N	0.996	188	0%	147	31.3%	4	25%	benign(0.395)	deleterious(0)	deleterious(0.572)	superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52618711	52618711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178523.3	-1	validated	p.R569I	0.204	246	0%	185	20.5%	3	33.3%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF480	147657	genome.wustl.edu	37	19	52825255	52825255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144684.2	+1	validated	p.R251I	0.080	54	0%	68	22.1%	1	0%	probably_damaging(0.977)	tolerated(0.12)	deleterious(0.679)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF880	400713	genome.wustl.edu	37	19	52887563	52887563	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145434.1	+1	validated	p.E244*	0.003	113	0%	80	31.2%	5	80%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52918494	52918494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032423.2	+1	validated	p.S130Y	0.000	108	0%	114	15.8%	1	0%	benign(0.017)	tolerated(0.18)	neutral(0.057)	NULL
ZNF528	84436	genome.wustl.edu	37	19	52919807	52919807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032423.2	+1	validated	p.L568F	0.001	135	0%	153	23.5%	3	33.3%	possibly_damaging(0.469)	deleterious(0.01)	deleterious(0.559)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF808	388558	genome.wustl.edu	37	19	53057509	53057509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039886.3	+1	validated	p.R447I	0.237	97	0%	109	23.9%	1	0%	possibly_damaging(0.814)	tolerated(0.15)	deleterious(0.548)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF808	388558	genome.wustl.edu	37	19	53058010	53058010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039886.3	+1	validated	p.K614T	0.061	96	0%	73	21.9%	1	0%	possibly_damaging(0.912)	deleterious(0.03)	deleterious(0.728)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF600	162966	genome.wustl.edu	37	19	53270044	53270044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198457.2	-1	validated	p.R322I	0.983	112	0%	123	10.6%	0	-	probably_damaging(0.953)	tolerated(0.17)	neutral(0.456)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF665	79788	genome.wustl.edu	37	19	53678789	53678789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024733.3	-1	provisional	p.F17L	0.998	380	0%	312	17%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
VN1R2	317701	genome.wustl.edu	37	19	53762651	53762651	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173856.2	+1	validated	p.F341	0.000	386	0%	295	22.7%	0	-	-	-	-	superfamily_SSF81321
MIR525	574470	genome.wustl.edu	37	19	54200844	54200844	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384978	+1	known	NULL	0.006	273	0%	300	29.7%	0	-	-	-	-	-
NLRP2	55655	genome.wustl.edu	37	19	55493031	55493031	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017852.3	+1	validated	p.V148	0.001	188	0%	217	16.1%	3	0%	-	-	-	NULL
PTPRH	5794	genome.wustl.edu	37	19	55708741	55708741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002842.3	-1	validated	p.K578N	0.000	86	0%	91	16.5%	4	0%	benign(0.001)	tolerated(0.38)	neutral(0.018)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FIZ1	84922	genome.wustl.edu	37	19	56103870	56103870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032836.2	-1	reviewed	p.F479L	1.000	17	0%	11	36.4%	53	22.6%	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RFPL4A	342931	genome.wustl.edu	37	19	56274033	56274033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145014.1	+1	validated	p.R119Q	0.000	222	0.5%	203	14.8%	0	-	probably_damaging(0.985)	tolerated(0.39)	neutral(0.448)	HMMSmart_PRY
NLRP4	147945	genome.wustl.edu	37	19	56382215	56382215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.E793K	0.000	218	0%	168	23.2%	0	-	benign(0.005)	tolerated(0.8)	neutral(0.001)	superfamily_RNI-like
NLRP5	126206	genome.wustl.edu	37	19	56549468	56549468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153447.4	+1	reviewed	p.S898Y	0.000	133	0%	127	34.6%	0	-	possibly_damaging(0.773)	tolerated(0.46)	neutral(0.299)	superfamily_SSF52047
ZNF667	63934	genome.wustl.edu	37	19	56953008	56953008	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022103.3	-1	validated	p.F452	0.329	95	0%	113	30.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF471	57573	genome.wustl.edu	37	19	57036103	57036103	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020813.2	+1	validated	p.V223fs	0.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF471	57573	genome.wustl.edu	37	19	57036281	57036281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020813.2	+1	validated	p.R282I	0.998	166	0%	126	31.7%	2	50%	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF470	388566	genome.wustl.edu	37	19	57089299	57089299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001668.3	+1	validated	p.R501I	0.836	105	0%	86	12.8%	3	66.6%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF470	388566	genome.wustl.edu	37	19	57089887	57089887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001668.3	+1	validated	p.R697Q	0.991	201	0%	171	32.2%	6	16.6%	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PEG3	5178	genome.wustl.edu	37	19	57326787	57326787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006210.2	-1	reviewed	p.R1008H	0.389	135	0%	92	17.4%	0	-	benign(0.164)	tolerated(0.17)	neutral(0.074)	NULL
USP29	57663	genome.wustl.edu	37	19	57640462	57640462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020903.2	+1	validated	p.K140T	0.000	102	0%	101	31.7%	0	-	benign(0.009)	tolerated(0.48)	neutral(0.011)	NULL
ZIM3	114026	genome.wustl.edu	37	19	57647093	57647093	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052882.1	-1	provisional	p.F204	0.017	243	0%	274	31.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100288211	100288211	genome.wustl.edu	37	19	57828601	57828601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343660.1	-1	model	p.F110L	1.000	95	0%	142	32.4%	0	-	-	-	-	HMMPfam_DUF862
ZNF543	125919	genome.wustl.edu	37	19	57840401	57840401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213598.3	+1	validated	p.R524Q	0.001	139	0%	107	20.6%	4	50%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF548	147694	genome.wustl.edu	37	19	57910689	57910689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152909.3	+1	validated	p.F345C	0.002	135	0%	150	20%	3	66.6%	benign(0.11)	tolerated(0.18)	neutral(0.065)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF17	7565	genome.wustl.edu	37	19	57932749	57932749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006959.2	+1	validated	p.R630I	0.012	89	0%	84	36.9%	1	0%	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF419	79744	genome.wustl.edu	37	19	58004947	58004947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098491.1	+1	validated	p.R342I	0.972	169	0%	170	19.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_C2H2 and C2HC zinc fingers
ZNF416	55659	genome.wustl.edu	37	19	58084151	58084151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017879.1	-1	provisional	p.R374I	0.019	221	0%	171	19.9%	3	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF587	84914	genome.wustl.edu	37	19	58353907	58353907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343662.1	+1	model	p.R566H	0.000	96	0%	98	17.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRIM28	10155	genome.wustl.edu	37	19	59061329	59061329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005762.2	+1	reviewed	p.V707A	0.992	185	0%	116	22.4%	2666	35.7%	possibly_damaging(0.435)	deleterious(0)	deleterious(0.587)	HMMSmart_SM00297
ANGPT4	51378	genome.wustl.edu	37	20	896758	896758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015985.2	-1	reviewed	p.E34K	0.000	114	0%	81	32.1%	0	-	benign(0.016)	tolerated(0.93)	neutral(0.001)	NULL
TMC2	117532	genome.wustl.edu	37	20	2552835	2552835	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080751.2	+1	validated	p.E189*	0.695	201	0%	197	30.5%	0	-	-	-	-	NULL
NOP56	10528	genome.wustl.edu	37	20	2637183	2637183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006392.2	+1	reviewed	p.D383N	1.000	80	0%	62	30.6%	84	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nop,superfamily_SSF89124
VPS16	64601	genome.wustl.edu	37	20	2847076	2847076	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022575.2	+1	reviewed	p.G792	1.000	186	0%	143	27.3%	75	33.3%	-	-	-	HMMPfam_Vps16_C
SLC4A11	83959	genome.wustl.edu	37	20	3210276	3210276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032034.3	-1	reviewed	p.E562K	0.001	101	0%	69	10.1%	17	0%	benign(0.03)	tolerated(0.74)	neutral(0.003)	HMMPfam_HCO3_cotransp
RASSF2	9770	genome.wustl.edu	37	20	4768399	4768399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014737.2	-1	reviewed	p.E231D	1.000	204	0%	179	25.1%	5	20%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_RA,HMMSmart_RA
SLC23A2	9962	genome.wustl.edu	37	20	4837814	4837814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005116.5	-1	reviewed	p.K586T	1.000	339	0%	242	10.3%	6	33.3%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
PAK7	57144	genome.wustl.edu	37	20	9525014	9525014	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020341.3	-1	reviewed	e6+2	1.000	102	0%	79	17.7%	0	-	-	-	-	-
ANKRD5	63926	genome.wustl.edu	37	20	10030145	10030145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022096.4	+1	validated	p.A310T	0.041	98	0%	95	42.1%	2	0%	possibly_damaging(0.952)	tolerated(0.4)	neutral(0.412)	superfamily_Ankyrin repeat
FLRT3	23767	genome.wustl.edu	37	20	14307375	14307375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013281.2	-1	reviewed	p.N260D	1.000	53	0%	39	12.8%	1	0%	possibly_damaging(0.474)	tolerated(0.36)	neutral(0.176)	HMMPfam_LRR_1,superfamily_SSF52058
KIF16B	55614	genome.wustl.edu	37	20	16359781	16359781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024704.3	-1	validated	p.L956F	1.000	425	0%	302	18.5%	3	33.3%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
SEC23B	10483	genome.wustl.edu	37	20	18516317	18516317	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006363.4	+1	reviewed	p.T445	0.801	455	0%	388	23.5%	142	32.3%	-	-	-	HMMPfam_Sec23_BS,superfamily_SSF81995
RALGAPA2	57186	genome.wustl.edu	37	20	20618075	20618075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020343.2	-1	validated	p.R246Q	1.000	143	0%	126	32.5%	2	0%	possibly_damaging(0.883)	tolerated(0.16)	neutral(0.404)	NULL
SSTR4	6754	genome.wustl.edu	37	20	23017066	23017066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001052.2	+1	validated	p.D316N	1.000	141	0%	125	20.8%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_SSF81321
MYLK2	85366	genome.wustl.edu	37	20	30409359	30409359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033118.3	+1	reviewed	p.K197N	0.182	88	0%	66	13.6%	0	-	benign(0.155)	tolerated(0.22)	neutral(0.056)	NULL
MYLK2	85366	genome.wustl.edu	37	20	30414693	30414693	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033118.3	+1	reviewed	p.D392	0.459	178	0.6%	150	16%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
BPIFB3	359710	genome.wustl.edu	37	20	31647832	31647832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182658.1	+1	provisional	p.F174L	0.574	47	2.1%	30	36.7%	0	-	benign(0)	tolerated(0.84)	neutral(0.001)	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
NCOA6	23054	genome.wustl.edu	37	20	33328940	33328940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.K1707T	1.000	199	0%	165	30.9%	67	71.6%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33330455	33330455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.A1202V	1.000	341	0.3%	301	21.9%	14	21.4%	possibly_damaging(0.782)	deleterious(0.03)	deleterious(0.657)	NULL
RBM12	10137	genome.wustl.edu	37	20	34241893	34241893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006047.4	-1	reviewed	p.K451R	1.000	112	0%	120	23.3%	1	0%	possibly_damaging(0.771)	tolerated(0.28)	neutral(0.318)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DSN1	79980	genome.wustl.edu	37	20	35386968	35386968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145315.1	-1	reviewed	p.I215L	0.998	92	0%	82	31.7%	1	0%	possibly_damaging(0.753)	tolerated(0.1)	deleterious(0.563)	HMMPfam_Mis12_component
ACTR5	79913	genome.wustl.edu	37	20	37380813	37380813	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024855.3	+1	validated	p.G215	1.000	112	0%	78	29.5%	6	50%	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
DHX35	60625	genome.wustl.edu	37	20	37647508	37647508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021931.2	+1	reviewed	p.L488F	1.000	213	0%	198	25.8%	8	12.5%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
TOP1	7150	genome.wustl.edu	37	20	39709861	39709861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003286.2	+1	reviewed	p.R163I	1.000	360	0%	336	18.8%	3	66.6%	possibly_damaging(0.901)	tolerated(0.26)	neutral(0.391)	NULL
GDAP1L1	78997	genome.wustl.edu	37	20	42893281	42893281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396831	+1	known	p.P226L	0.001	38	0%	27	22.2%	0	-	unknown(0)	-	-	NULL
ADA	100	genome.wustl.edu	37	20	43248985	43248985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000022.2	-1	reviewed	p.D345N	0.000	216	0%	185	27.6%	9	44.4%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_A_deaminase,superfamily_SSF51556
STK4	6789	genome.wustl.edu	37	20	43610567	43610567	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006282.2	+1	reviewed	p.R115*	1.000	513	0%	482	12%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RBPJL	11317	genome.wustl.edu	37	20	43940866	43940866	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014276.2	+1	reviewed	p.F150	0.997	40	0%	35	45.7%	0	-	-	-	-	superfamily_P53_like_DNA_bnd,HMMPfam_LAG1-DNAbind
ZNF334	55713	genome.wustl.edu	37	20	45131026	45131026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018102.3	-1	validated	p.E318K	1.000	141	0%	102	34.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF57667
MIR1302-5	100302146	genome.wustl.edu	37	20	49231306	49231306	+	RNA	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408164	-1	known	NULL	0.017	58	0%	49	18.4%	0	-	-	-	-	-
BCAS1	8537	genome.wustl.edu	37	20	52569996	52569996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003657.2	-1	reviewed	p.S552F	0.998	242	0%	230	20%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM209B	388799	genome.wustl.edu	37	20	55108463	55108463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013646.2	+1	predicted	p.F22L	0.939	93	0%	78	26.9%	0	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
BMP7	655	genome.wustl.edu	37	20	55803379	55803379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001719.2	-1	reviewed	p.E173K	1.000	115	0.9%	81	27.2%	1	100%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_TGFb_propeptide
CTCFL	140690	genome.wustl.edu	37	20	56083819	56083819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080618.2	-1	reviewed	p.R506H	0.974	230	0.4%	195	30.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SYCP2	10388	genome.wustl.edu	37	20	58448965	58448965	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.K1167N	0.004	429	0.2%	402	29.1%	0	-	possibly_damaging(0.944)	tolerated(0.09)	deleterious(0.685)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58461866	58461866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.E796D	0.449	293	0%	348	18.1%	0	-	benign(0.026)	tolerated(0.48)	neutral(0.011)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58467060	58467060	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.S783	0.031	206	0.5%	207	12.1%	0	-	-	-	-	NULL
FAM217B	63939	genome.wustl.edu	37	20	58519298	58519298	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022106.1	+1	predicted	p.S100	0.030	96	0%	117	18.8%	1	0%	-	-	-	NULL
YTHDF1	54915	genome.wustl.edu	37	20	61833723	61833723	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017798.3	-1	validated	p.I523	0.997	254	0%	216	28.2%	24	33.3%	-	-	-	HMMPfam_YTH
NRIP1	8204	genome.wustl.edu	37	21	16337152	16337152	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003489.3	-1	reviewed	p.L1121*	0.140	140	0%	191	17.8%	2	0%	-	-	-	NULL
USP25	29761	genome.wustl.edu	37	21	17191118	17191118	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013396.3	+1	validated	p.E345*	1.000	253	0.4%	243	19.3%	1	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP25	29761	genome.wustl.edu	37	21	17214748	17214748	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013396.3	+1	validated	p.E742	1.000	120	0%	108	15.7%	1	0%	-	-	-	NULL
NCAM2	4685	genome.wustl.edu	37	21	22656549	22656549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004540.2	+1	reviewed	p.P56S	1.000	245	0%	225	23.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
APP	351	genome.wustl.edu	37	21	27347519	27347519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000484.3	-1	reviewed	p.S441Y	1.000	181	0%	130	18.5%	672	29.6%	unknown(0)	deleterious(0)	-	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
KRTAP19-3	337970	genome.wustl.edu	37	21	31864036	31864036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181609.3	-1	validated	p.F80L	0.015	156	0%	121	35.5%	0	-	unknown(0)	-	-	NULL
KRTAP19-7	337974	genome.wustl.edu	37	21	31933555	31933555	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181614.1	-1	provisional	p.F18	0.000	259	0%	193	24.9%	0	-	-	-	-	NULL
SCAF4	57466	genome.wustl.edu	37	21	33074089	33074089	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.Q200	1.000	123	0%	88	30.7%	7	14.2%	-	-	-	NULL
IL10RB	3588	genome.wustl.edu	37	21	34660443	34660443	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000628.3	+1	reviewed	p.L227	0.025	109	0%	81	17.3%	121	4.1%	-	-	-	NULL
SON	6651	genome.wustl.edu	37	21	34921891	34921891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.K118N	1.000	51	0%	59	27.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC5A3	6526	genome.wustl.edu	37	21	35467809	35467809	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006933.4	+1	validated	p.S104	0.677	299	0%	234	32.5%	1	0%	-	-	-	HMMPfam_SSF
DOPEY2	9980	genome.wustl.edu	37	21	37653852	37653852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.F2035L	0.998	162	0%	144	18.8%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTC3	7267	genome.wustl.edu	37	21	38519889	38519889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.D668Y	1.000	249	0%	222	29.3%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38525425	38525425	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411496	+1	known	p.E1*	0.190	95	0%	127	21.3%	2	50%	possibly_damaging(0.517)	deleterious(0)	deleterious(0.619)	NULL
FLJ45139	400867	genome.wustl.edu	37	21	40250716	40250716	+	RNA	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078571.1	-1	model	NULL	0.000	190	0%	161	21.1%	0	-	-	-	-	-
BRWD1	54014	genome.wustl.edu	37	21	40559106	40559106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.R2270Q	1.000	193	0%	251	32.7%	1	100%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	superfamily_WD40 repeat-like
LCA5L	150082	genome.wustl.edu	37	21	40781965	40781965	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152505.3	-1	validated	p.E408*	0.028	610	0%	611	16.5%	0	-	-	-	-	NULL
B3GALT5	10317	genome.wustl.edu	37	21	41032583	41032583	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006057.1	+1	reviewed	p.E33*	0.001	280	0%	241	35.3%	1	100%	-	-	-	NULL
IGSF5	150084	genome.wustl.edu	37	21	41164016	41164016	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080444.1	+1	provisional	p.Q346H	0.000	193	0%	155	11.6%	1	100%	benign(0.016)	tolerated(0.07)	neutral(0.320)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41452100	41452100	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.E1467*	1.000	147	0%	149	10.1%	0	-	-	-	-	superfamily_Fibronectin type III
RRP1B	23076	genome.wustl.edu	37	21	45096650	45096650	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015056.2	+1	validated	p.F217	0.919	97	1%	85	16.5%	8	12.5%	-	-	-	HMMPfam_Nop52
TRPM2	7226	genome.wustl.edu	37	21	45833850	45833850	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003307.3	+1	reviewed	p.A1013	0.000	123	0%	95	25.3%	19	0%	-	-	-	HMMPfam_Ion_trans
TRPM2	7226	genome.wustl.edu	37	21	45838307	45838307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003307.3	+1	reviewed	p.K1110N	0.992	78	0%	80	18.8%	5	0%	benign(0.202)	tolerated(0.16)	neutral(0.079)	NULL
ITGB2	3689	genome.wustl.edu	37	21	46314966	46314966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000211.3	-1	reviewed	p.E335K	0.982	70	0%	55	36.4%	80	5%	benign(0)	tolerated(0.72)	neutral(0.002)	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,superfamily_SSF69179
ITGB2	3689	genome.wustl.edu	37	21	46320235	46320235	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000211.3	-1	reviewed	p.F299	0.785	129	0%	85	18.8%	135	0.7%	-	-	-	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300
FTCD	10841	genome.wustl.edu	37	21	47558817	47558817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006657.2	-1	reviewed	p.K427N	0.732	80	0%	64	29.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_FTCD_C,superfamily_Methenyltetrahydrofolate cyclohydrolase-like
PCNT	5116	genome.wustl.edu	37	21	47786919	47786919	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.T1010	0.000	93	0%	87	26.4%	4	50%	-	-	-	NULL
PRODH	5625	genome.wustl.edu	37	22	18912670	18912670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457083	-1	known	p.R111W	0.685	110	0%	90	23.3%	0	-	unknown(0)	-	-	NULL
USP41	373856	genome.wustl.edu	37	22	20718500	20718500	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000292729	-1	known	p.A281V	1.000	539	0%	388	19.8%	33	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
HIC2	23119	genome.wustl.edu	37	22	21799271	21799271	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015094.2	+1	validated	p.S29	0.786	55	0%	51	9.8%	3	0%	-	-	-	superfamily_POZ domain
TOP3B	8940	genome.wustl.edu	37	22	22312958	22312958	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457270	-1	known	p.S466L	0.731	158	0%	106	21.7%	37	27%	-	-	-	NULL
PIWIL3	440822	genome.wustl.edu	37	22	25119195	25119195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008496.2	-1	validated	p.K762N	1.000	245	0%	278	19.8%	0	-	possibly_damaging(0.929)	tolerated(0.06)	deleterious(0.699)	HMMPfam_Piwi,superfamily_RNaseH_fold
MYO18B	84700	genome.wustl.edu	37	22	26164525	26164525	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.E214	0.193	40	0%	51	23.5%	0	-	-	-	-	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26688507	26688507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021115.4	+1	validated	p.A77V	0.002	53	0%	38	39.5%	0	-	benign(0.006)	tolerated(0.11)	neutral(0.272)	NULL
ZNRF3	84133	genome.wustl.edu	37	22	29445207	29445207	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032173.2	+1	validated	p.A246	0.000	43	0%	41	14.6%	61	34.4%	-	-	-	NULL
C22orf31	25770	genome.wustl.edu	37	22	29456529	29456529	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015370.1	-1	predicted	p.S102	0.000	292	0%	247	27.9%	0	-	-	-	-	NULL
RFPL1	5988	genome.wustl.edu	37	22	29837600	29837600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021026.2	+1	validated	p.R148Q	0.000	311	0.3%	268	19%	0	-	probably_damaging(0.978)	tolerated(0.42)	neutral(0.434)	HMMSmart_PRY
ASCC2	84164	genome.wustl.edu	37	22	30221125	30221125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032204.3	-1	provisional	p.R121Q	0.904	214	0%	164	27.4%	28	32.1%	possibly_damaging(0.853)	tolerated(0.11)	deleterious(0.600)	NULL
LIMK2	3985	genome.wustl.edu	37	22	31663018	31663018	+	Nonsense_Mutation	SNP	C	C	T	rs114127458	byCluster;by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031801.1	+1	reviewed	p.R343*	1.000	237	0%	190	18.4%	27	14.8%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
EIF4ENIF1	56478	genome.wustl.edu	37	22	31884620	31884620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019843.3	-1	reviewed	p.R29C	1.000	236	0%	218	29.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SFI1	9814	genome.wustl.edu	37	22	31952984	31952984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007467.1	+1	validated	p.R201C	1.000	159	0%	127	26%	34	14.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC5A4	6527	genome.wustl.edu	37	22	32629009	32629009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014227.2	-1	validated	p.R300C	1.000	78	0%	44	15.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
RFPL3	10738	genome.wustl.edu	37	22	32756704	32756704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098535.1	+1	validated	p.R280H	0.008	280	0.4%	240	24.6%	0	-	possibly_damaging(0.858)	tolerated(0.09)	deleterious(0.627)	HMMPfam_SPRY,HMMSmart_SPRY
C22orf28	51493	genome.wustl.edu	37	22	32792233	32792233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014306.4	-1	validated	p.A273V	1.000	168	0%	123	37.4%	163	49%	possibly_damaging(0.594)	tolerated(0.06)	deleterious(0.527)	HMMPfam_UPF0027,superfamily_Hypothetical protein PH1602
FBXO7	25793	genome.wustl.edu	37	22	32889158	32889158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012179.3	+1	reviewed	p.R345Q	1.000	563	0.2%	468	32.1%	62	61.2%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383
APOL5	80831	genome.wustl.edu	37	22	36122398	36122398	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030642.1	+1	reviewed	p.L95	0.007	176	0%	117	23.9%	0	-	-	-	-	HMMPfam_ApoL
RBFOX2	23543	genome.wustl.edu	37	22	36164307	36164307	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082578.1	-1	reviewed	p.I251	1.000	146	0%	166	16.3%	38	5.2%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
APOL1	8542	genome.wustl.edu	37	22	36650017	36650017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145343.2	+1	reviewed	p.F3L	0.001	187	0%	136	22.1%	6	16.6%	unknown(0)	deleterious(0)	-	NULL
TST	7263	genome.wustl.edu	37	22	37407254	37407254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003312.4	-1	reviewed	p.K236N	1.000	31	0%	24	33.3%	106	47.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
CYTH4	27128	genome.wustl.edu	37	22	37707050	37707050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013385.3	+1	reviewed	p.K277R	1.000	85	0%	45	37.8%	29	0%	possibly_damaging(0.762)	tolerated(0.08)	deleterious(0.583)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
CYTH4	27128	genome.wustl.edu	37	22	37707081	37707081	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446506	+1	known	p.P40S	1.000	83	0%	55	20%	25	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ENSG00000184949	0	genome.wustl.edu	37	22	39016233	39016233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355830	-1	known	p.K335T	0.000	110	0%	121	19.8%	0	-	possibly_damaging(0.85)	tolerated(0.32)	neutral(0.351)	NULL
SLC25A17	10478	genome.wustl.edu	37	22	41188625	41188625	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006358.2	-1	validated	p.F80V	1.000	121	0%	133	30.1%	9	33.3%	unknown(0)	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
EP300	2033	genome.wustl.edu	37	22	41562649	41562649	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001429.3	+1	reviewed	p.E1285*	1.000	211	0%	266	22.6%	3	0%	-	-	-	HMMPfam_DUF906
L3MBTL2	83746	genome.wustl.edu	37	22	41613144	41613144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031488.4	+1	validated	p.D180N	1.000	92	0%	69	11.6%	29	13.7%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
PACSIN2	11252	genome.wustl.edu	37	22	43284692	43284692	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007229.3	-1	reviewed	p.K189T	1.000	588	0.3%	483	19.7%	22	59%	possibly_damaging(0.855)	deleterious(0)	deleterious(0.774)	NULL
SCUBE1	80274	genome.wustl.edu	37	22	43606959	43606959	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173050.2	-1	validated	p.F784	0.995	392	0.3%	283	32.5%	5	60%	-	-	-	HMMPfam_GCC2_GCC3
PNPLA5	150379	genome.wustl.edu	37	22	44282301	44282301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138814.3	-1	reviewed	p.N277K	0.000	158	0%	101	15.8%	0	-	benign(0.073)	tolerated(0.82)	neutral(0.005)	NULL
SMC1B	27127	genome.wustl.edu	37	22	45789573	45789573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148674.3	-1	validated	p.R496C	0.997	266	0%	262	13.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_SMC_hinge,superfamily_SSF52540
RIBC2	26150	genome.wustl.edu	37	22	45828232	45828232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015653.3	+1	validated	p.G307E	0.000	147	0.7%	141	21.3%	7	42.8%	benign(0.014)	tolerated(0.25)	neutral(0.037)	HMMPfam_RIB43A
IL17REL	400935	genome.wustl.edu	37	22	50436632	50436632	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001694.2	-1	validated	p.C236	0.955	13	0%	17	23.5%	0	-	-	-	-	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50671900	50671900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020461.3	-1	reviewed	p.D321N	1.000	28	0%	15	26.7%	7	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM116B	414918	genome.wustl.edu	37	22	50752254	50752254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001794.3	-1	validated	p.R398W	0.902	63	0%	54	16.7%	29	31%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1630
IL3RA	3563	genome.wustl.edu	37	X	1471285	1471285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002183.2	+1	reviewed	p.D168N	0.002	361	0%	265	27.2%	4	0%	possibly_damaging(0.714)	tolerated(0.44)	neutral(0.271)	superfamily_FN_III-like
ZBED1	9189	genome.wustl.edu	37	X	2408667	2408667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004729.3	-1	reviewed	p.D32N	1.000	279	0%	210	27.1%	27	33.3%	probably_damaging(0.982)	tolerated(0.6)	neutral(0.431)	HMMPfam_zf-BED,HMMSmart_ZnF_BED
ARSF	416	genome.wustl.edu	37	X	3007607	3007607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004042.3	+1	reviewed	p.D301N	0.000	503	0%	396	28.3%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
MXRA5	25878	genome.wustl.edu	37	X	3227897	3227897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.L2783M	0.019	175	0%	135	28.1%	44	0%	benign(0.253)	tolerated(0.11)	neutral(0.298)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3240192	3240192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.E1178D	0.000	395	0%	355	17.7%	0	-	benign(0.004)	tolerated(0.41)	neutral(0.015)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3248073	3248073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.D232G	0.961	161	0%	168	34.5%	1	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMSmart_SM00082,superfamily_L domain-like
KAL1	3730	genome.wustl.edu	37	X	8555892	8555892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000216.2	-1	reviewed	p.W223C	1.000	219	0%	164	37.8%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SHROOM2	357	genome.wustl.edu	37	X	9900610	9900610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001649.2	+1	reviewed	p.T1096M	0.000	40	0%	23	17.4%	18	44.4%	possibly_damaging(0.812)	deleterious(0.02)	deleterious(0.689)	NULL
SHROOM2	357	genome.wustl.edu	37	X	9912735	9912735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001649.2	+1	reviewed	p.E1456K	1.000	38	0%	43	18.6%	9	0%	probably_damaging(0.961)	tolerated(0.14)	deleterious(0.653)	HMMPfam_ASD2
ARHGAP6	395	genome.wustl.edu	37	X	11160390	11160390	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013427.2	-1	reviewed	p.S740	1.000	363	0%	383	20.6%	0	-	-	-	-	NULL
MSL3	10943	genome.wustl.edu	37	X	11793126	11793126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078629.2	+1	reviewed	p.F498L	1.000	138	0%	134	11.2%	1	100%	possibly_damaging(0.882)	tolerated(0.07)	deleterious(0.663)	HMMPfam_MRG
TLR7	51284	genome.wustl.edu	37	X	12904183	12904183	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016562.3	+1	reviewed	p.R186*	0.999	65	0%	53	22.6%	0	-	-	-	-	superfamily_L domain-like
EGFL6	25975	genome.wustl.edu	37	X	13607702	13607702	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015507.3	+1	reviewed	p.S34	0.000	166	0%	171	31.6%	1	0%	-	-	-	NULL
EGFL6	25975	genome.wustl.edu	37	X	13635864	13635864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015507.3	+1	reviewed	p.S265Y	1.000	184	0%	174	17.8%	4	0%	possibly_damaging(0.948)	tolerated(0.27)	neutral(0.424)	NULL
GPM6B	2824	genome.wustl.edu	37	X	13795481	13795481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001995.1	-1	reviewed	p.N254T	1.000	559	0%	462	19.5%	44	2.2%	possibly_damaging(0.715)	tolerated(0.24)	neutral(0.296)	HMMPfam_Myelin_PLP,HMMSmart_PLP,PatternScan_MYELIN_PLP_2
FANCB	2187	genome.wustl.edu	37	X	14882686	14882686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.F316S	0.995	105	0%	95	15.8%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
FANCB	2187	genome.wustl.edu	37	X	14882986	14882986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.S216Y	0.116	121	0%	115	24.3%	0	-	possibly_damaging(0.528)	deleterious(0.02)	deleterious(0.561)	NULL
PIGA	5277	genome.wustl.edu	37	X	15349824	15349824	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002641.2	-1	reviewed	p.R77*	1.000	217	0%	173	19.7%	3	0%	-	-	-	HMMPfam_PIGA,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
TMEM27	57393	genome.wustl.edu	37	X	15657849	15657849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020665.4	-1	reviewed	p.F116L	0.821	307	0%	281	29.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TXLNG	55787	genome.wustl.edu	37	X	16836784	16836784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018360.2	+1	reviewed	p.L64I	0.996	367	0.3%	303	19.5%	4	0%	possibly_damaging(0.766)	tolerated(0.32)	neutral(0.308)	NULL
REPS2	9185	genome.wustl.edu	37	X	17070552	17070552	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004726.2	+1	reviewed	p.E319*	1.000	272	0%	246	15.9%	1	0%	-	-	-	HMMSmart_SM00027,superfamily_EF-hand
NHS	4810	genome.wustl.edu	37	X	17742544	17742544	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198270.2	+1	reviewed	p.E391*	1.000	207	0%	217	24.4%	0	-	-	-	-	NULL
NHS	4810	genome.wustl.edu	37	X	17743608	17743608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198270.2	+1	reviewed	p.R440K	1.000	159	0%	121	34.7%	0	-	possibly_damaging(0.797)	tolerated(0.11)	deleterious(0.571)	NULL
BEND2	139105	genome.wustl.edu	37	X	18219964	18219964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153346.4	-1	validated	p.S335Y	0.001	394	0%	388	31.7%	0	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
CDKL5	6792	genome.wustl.edu	37	X	18593493	18593493	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037343.1	+1	reviewed	p.E55	1.000	231	0%	212	18.4%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GPR64	10149	genome.wustl.edu	37	X	19031841	19031841	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079858.2	-1	validated	p.A354	0.000	249	0%	207	34.3%	9	0%	-	-	-	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19431503	19431503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338883	-1	known	p.S557Y	1.000	464	0.2%	440	24.3%	0	-	possibly_damaging(0.768)	deleterious(0.05)	deleterious(0.630)	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19433338	19433338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338883	-1	known	p.R493W	1.000	115	0%	141	26.2%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
PHEX	5251	genome.wustl.edu	37	X	22117235	22117235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000444.4	+1	reviewed	p.D349Y	1.000	151	0%	156	21.8%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
PTCHD1	139411	genome.wustl.edu	37	X	23411060	23411060	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173495.2	+1	validated	p.A475	0.803	107	0%	90	25.6%	0	-	-	-	-	HMMPfam_Patched
POLA1	5422	genome.wustl.edu	37	X	24761362	24761362	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016937.3	+1	reviewed	p.E822*	1.000	270	0%	319	28.8%	3	0%	-	-	-	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
DCAF8L2	347442	genome.wustl.edu	37	X	27765579	27765579	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136533.1	+1	provisional	p.V189	0.007	76	0%	37	43.2%	0	-	-	-	-	superfamily_WD40 repeat-like
DCAF8L2	347442	genome.wustl.edu	37	X	27766293	27766293	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136533.1	+1	provisional	p.C427	0.032	312	0.3%	260	34.2%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
DCAF8L2	347442	genome.wustl.edu	37	X	27766443	27766443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136533.1	+1	provisional	p.F477L	1.000	168	0%	122	26.2%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
NR0B1	190	genome.wustl.edu	37	X	30322856	30322856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000475.4	-1	reviewed	p.T418M	0.878	357	0%	308	26.9%	0	-	benign(0.079)	tolerated(0.29)	neutral(0.035)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
DMD	1756	genome.wustl.edu	37	X	32360240	32360240	+	Nonsense_Mutation	SNP	G	G	A	rs128626249		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.R1967*	1.000	101	0%	96	11.5%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32509457	32509457	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.L853	1.000	238	0%	224	27.7%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CXorf22	170063	genome.wustl.edu	37	X	35969315	35969315	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152632.3	+1	validated	p.E242*	0.647	274	0%	240	21.2%	0	-	-	-	-	NULL
XK	7504	genome.wustl.edu	37	X	37545376	37545376	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021083.2	+1	reviewed	p.T54	1.000	27	0%	20	25%	21	100%	-	-	-	HMMPfam_XK-related
CYBB	1536	genome.wustl.edu	37	X	37641412	37641412	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000397.3	+1	reviewed	p.F39	0.002	489	0%	406	30%	5	0%	-	-	-	NULL
BCOR	54880	genome.wustl.edu	37	X	39922896	39922896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.S1271L	0.977	296	0%	221	19.9%	15	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
MED14	9282	genome.wustl.edu	37	X	40518692	40518692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.F1284L	1.000	414	0%	365	23.8%	2	100%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	NULL
CASK	8573	genome.wustl.edu	37	X	41712457	41712457	+	Missense_Mutation	SNP	C	C	T	rs137852816		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003688.3	-1	reviewed	p.R28Q	1.000	184	0%	157	40.8%	13	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
EFHC2	80258	genome.wustl.edu	37	X	44037675	44037675	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441230	-1	known	p.E610*	1.000	199	0%	169	30.2%	5	0%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	superfamily_EF-hand
ZNF157	7712	genome.wustl.edu	37	X	47272521	47272521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003446.3	+1	reviewed	p.R350I	1.000	131	0%	123	13%	0	-	possibly_damaging(0.893)	tolerated(0.09)	deleterious(0.648)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SYN1	6853	genome.wustl.edu	37	X	47464424	47464424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006950.3	-1	reviewed	p.E243K	1.000	432	0%	378	30.7%	0	-	possibly_damaging(0.851)	tolerated(1)	neutral(0.327)	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
ZNF81	347344	genome.wustl.edu	37	X	47775351	47775351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007137.3	+1	reviewed	p.H436N	1.000	115	0%	88	25%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF630	57232	genome.wustl.edu	37	X	47918337	47918337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037735.2	-1	validated	p.Q498H	0.000	174	0.6%	166	37.3%	0	-	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SSX6	280657	genome.wustl.edu	37	X	47976431	47976431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000304314	+1	known	p.S164L	0.000	361	0.3%	298	30.9%	0	-	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
SSX3	10214	genome.wustl.edu	37	X	48213477	48213477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021014.2	-1	reviewed	p.F79L	0.001	685	0%	579	30.4%	0	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMSmart_KRAB
SSX4	6759	genome.wustl.edu	37	X	48244872	48244872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005636.3	+1	reviewed	p.R88Q	0.000	720	0.1%	655	10.4%	0	-	probably_damaging(0.963)	tolerated(0.47)	neutral(0.417)	NULL
FTSJ1	24140	genome.wustl.edu	37	X	48340102	48340102	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012280.2	+1	reviewed	p.Y218	0.974	46	0%	49	36.7%	33	87.8%	-	-	-	NULL
SUV39H1	6839	genome.wustl.edu	37	X	48564709	48564709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453214	+1	known	p.A142V	0.722	57	0%	25	24%	43	0%	unknown(0)	-	-	NULL
WDR45	11152	genome.wustl.edu	37	X	48933246	48933246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007075.3	-1	reviewed	p.L229R	1.000	98	0%	70	25.7%	124	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_WD40,superfamily_WD40_like
CLCN5	1184	genome.wustl.edu	37	X	49851439	49851439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127898.1	+1	reviewed	p.A490V	1.000	195	0%	144	25.7%	1	0%	benign(0.012)	tolerated(0.08)	neutral(0.300)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
CLCN5	1184	genome.wustl.edu	37	X	49855153	49855153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127898.1	+1	reviewed	p.D709Y	1.000	101	0%	107	30.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
CCNB3	85417	genome.wustl.edu	37	X	50053047	50053047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.M626I	0.000	102	1%	71	14.1%	0	-	benign(0.014)	tolerated(0.51)	neutral(0.009)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50351124	50351124	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.E1006	1.000	87	0%	65	33.8%	1	100%	-	-	-	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50351183	50351183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.E987K	1.000	43	0%	44	15.9%	0	-	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50376745	50376745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.F776L	1.000	103	0%	96	34.4%	1	0%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_ASD1
HSD17B10	3028	genome.wustl.edu	37	X	53459201	53459201	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004493.2	-1	reviewed	p.V117	0.668	198	0%	196	20.9%	167	0%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
HUWE1	10075	genome.wustl.edu	37	X	53560307	53560307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.A4363V	1.000	105	0%	83	25.3%	62	0%	unknown(0)	deleterious(0)	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HUWE1	10075	genome.wustl.edu	37	X	53569498	53569498	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427052	-1	known	p.G2828R	1.000	82	0%	82	22%	190	0%	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53644087	53644087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.L601I	0.993	166	0.6%	168	24.4%	41	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF913,superfamily_ARM repeat
WNK3	65267	genome.wustl.edu	37	X	54337651	54337651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.P204H	1.000	355	0%	341	11.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
WNK3	65267	genome.wustl.edu	37	X	54359937	54359937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.R57I	0.998	195	0%	217	17.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
GNL3L	54552	genome.wustl.edu	37	X	54585066	54585066	+	Missense_Mutation	SNP	G	G	T	rs58782845		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019067.5	+1	reviewed	p.K548N	1.000	54	0%	57	14%	12	0%	possibly_damaging(0.898)	tolerated(0.11)	deleterious(0.626)	NULL
APEX2	27301	genome.wustl.edu	37	X	55033350	55033350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014481.2	+1	reviewed	p.E347K	0.001	43	0%	47	19.1%	42	0%	benign(0)	tolerated(0.9)	-	NULL
APEX2	27301	genome.wustl.edu	37	X	55033426	55033426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014481.2	+1	reviewed	p.A372V	0.965	73	0%	76	23.7%	28	89.2%	benign(0.178)	tolerated(0.21)	neutral(0.060)	NULL
FOXR2	139628	genome.wustl.edu	37	X	55650398	55650398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198451.3	+1	validated	p.N85S	0.660	118	0%	106	23.6%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
KLF8	11279	genome.wustl.edu	37	X	56291623	56291623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007250.4	+1	reviewed	p.S31Y	0.093	79	0%	54	29.6%	1	0%	possibly_damaging(0.805)	deleterious(0.04)	deleterious(0.652)	NULL
ZXDA	7789	genome.wustl.edu	37	X	57935853	57935853	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007156.4	-1	reviewed	p.A334	0.000	83	0%	75	22.7%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ARHGEF9	23229	genome.wustl.edu	37	X	62944490	62944490	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015185.2	-1	reviewed	p.V37	1.000	134	0%	96	12.5%	4	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
LAS1L	81887	genome.wustl.edu	37	X	64734849	64734849	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031206.4	-1	validated	p.D644	0.945	65	0%	54	29.6%	37	0%	-	-	-	NULL
VSIG4	11326	genome.wustl.edu	37	X	65244971	65244971	+	Missense_Mutation	SNP	C	C	A	rs17315645	byCluster;byFrequency;by1000genomes	TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007268.2	-1	reviewed	p.G279V	0.017	273	0%	230	40.9%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100129144	100129144	genome.wustl.edu	37	X	66594426	66594426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001721427.1	+1	model	p.E153D	1.000	63	0%	69	34.8%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
EFNB1	1947	genome.wustl.edu	37	X	68060194	68060194	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004429.4	+1	reviewed	p.A246	0.656	102	0%	78	10.3%	24	8.3%	-	-	-	NULL
NLGN3	54413	genome.wustl.edu	37	X	70389238	70389238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.R593Q	1.000	117	0%	100	20%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_COesterase,superfamily_SSF53474
TAF1	6872	genome.wustl.edu	37	X	70603870	70603870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.P689L	1.000	530	0%	444	25.9%	6	0%	benign(0.002)	tolerated(0.29)	neutral(0.029)	NULL
MIR545	664614	genome.wustl.edu	37	X	73506998	73506998	+	RNA	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385085	-1	known	NULL	1.000	91	0%	97	21.6%	0	-	-	-	-	-
KIAA2022	340533	genome.wustl.edu	37	X	73962588	73962588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008537.2	-1	validated	p.I602V	0.187	391	0%	341	27%	0	-	benign(0)	tolerated(1)	-	NULL
ATRX	546	genome.wustl.edu	37	X	76937748	76937748	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.K1000N	0.732	131	0%	128	20.3%	0	-	benign(0.167)	tolerated(0.49)	neutral(0.026)	NULL
ATP7A	538	genome.wustl.edu	37	X	77275827	77275827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.T905A	1.000	147	0%	134	34.3%	5	60%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
CYSLTR1	10800	genome.wustl.edu	37	X	77528769	77528769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006639.2	-1	reviewed	p.L159I	1.000	203	0%	161	27.3%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LPAR4	2846	genome.wustl.edu	37	X	78011060	78011060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005296.2	+1	reviewed	p.R232C	0.997	206	0%	184	27.7%	0	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ITM2A	9452	genome.wustl.edu	37	X	78616937	78616937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004867.4	-1	reviewed	p.D198Y	1.000	158	0%	116	33.6%	13	15.3%	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMPfam_BRICHOS
TBX22	50945	genome.wustl.edu	37	X	79278694	79278694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109878.1	+1	reviewed	p.R104I	1.000	147	0%	98	14.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_1
FAM46D	169966	genome.wustl.edu	37	X	79699097	79699097	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152630.4	+1	validated	p.P353	0.992	100	0%	102	23.5%	0	-	-	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	79936867	79936867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.R1543W	0.947	355	0%	344	20.9%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79991559	79991559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.R281I	1.000	142	0%	163	11%	2	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
CYLC1	1538	genome.wustl.edu	37	X	83129419	83129419	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021118.1	+1	provisional	p.S568*	0.014	130	0%	157	28%	0	-	-	-	-	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83352818	83352818	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014496.4	-1	reviewed	p.I605	0.986	173	0%	190	30.5%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
POF1B	79983	genome.wustl.edu	37	X	84606374	84606374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024921.3	-1	reviewed	p.E174D	1.000	418	0%	397	19.9%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
CPXCR1	53336	genome.wustl.edu	37	X	88009062	88009062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033048.5	+1	validated	p.K216T	0.000	131	0%	143	33.6%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
TRMT2B	79979	genome.wustl.edu	37	X	100297105	100297105	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024917.5	-1	reviewed	p.T58	0.186	234	0%	211	30.8%	3	0%	-	-	-	NULL
CENPI	2491	genome.wustl.edu	37	X	100364525	100364525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006733.2	+1	reviewed	p.S143Y	1.000	414	0%	320	15%	3	0%	probably_damaging(0.986)	deleterious(0.05)	deleterious(0.780)	HMMPfam_Mis6
DRP2	1821	genome.wustl.edu	37	X	100510195	100510195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001939.2	+1	reviewed	p.N735H	1.000	348	0%	267	25.8%	0	-	probably_damaging(0.981)	tolerated(0.16)	deleterious(0.485)	NULL
ARMCX2	9823	genome.wustl.edu	37	X	100911098	100911098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014782.5	-1	reviewed	p.L493I	0.998	144	0%	153	12.4%	7	0%	probably_damaging(0.964)	tolerated(0.14)	deleterious(0.656)	HMMPfam_DUF634,superfamily_ARM-type_fold
GPRASP1	9737	genome.wustl.edu	37	X	101909008	101909008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.S56F	0.007	186	0%	143	15.4%	1	0%	benign(0.144)	tolerated(0.06)	neutral(0.335)	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101910527	101910527	+	Silent	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.I562	0.000	85	0%	67	25.4%	0	-	-	-	-	NULL
BEX1	55859	genome.wustl.edu	37	X	102318055	102318055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018476.3	-1	validated	p.R50S	0.018	289	0%	194	19.1%	4	0%	probably_damaging(0.983)	tolerated(0.33)	neutral(0.453)	HMMPfam_BEX
CXorf57	55086	genome.wustl.edu	37	X	105868404	105868404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018015.5	+1	validated	p.R291W	0.002	499	0%	418	11.5%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_Nucleic acid-binding proteins
CXorf57	55086	genome.wustl.edu	37	X	105905390	105905390	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018015.5	+1	validated	p.R708	0.988	209	0%	168	18.5%	0	-	-	-	-	NULL
MORC4	79710	genome.wustl.edu	37	X	106224708	106224708	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024657.4	-1	reviewed	e6-1	1.000	174	0%	179	22.3%	1	0%	-	-	-	-
VSIG1	340547	genome.wustl.edu	37	X	107301375	107301375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182607.4	+1	reviewed	p.E53*	0.000	353	0%	336	25.9%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
GUCY2F	2986	genome.wustl.edu	37	X	108647605	108647605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001522.2	-1	reviewed	p.D693N	1.000	279	0.7%	218	21.1%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
GUCY2F	2986	genome.wustl.edu	37	X	108708671	108708671	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001522.2	-1	reviewed	p.I244	1.000	100	0%	87	24.1%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ACSL4	2182	genome.wustl.edu	37	X	108924310	108924310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022977.2	-1	reviewed	p.A232V	0.069	392	0%	363	22.6%	14	0%	benign(0.001)	tolerated(0.15)	neutral(0.241)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
CHRDL1	91851	genome.wustl.edu	37	X	109924716	109924716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143981.1	-1	reviewed	p.R384*	0.995	223	0%	198	19.2%	0	-	-	-	-	NULL
CHRDL1	91851	genome.wustl.edu	37	X	109963074	109963074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143981.1	-1	reviewed	p.R177Q	0.998	114	0%	101	12.9%	0	-	benign(0.332)	tolerated(0.37)	neutral(0.123)	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
AMOT	154796	genome.wustl.edu	37	X	112054591	112054591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113490.1	-1	reviewed	p.A475T	1.000	313	0%	266	20.3%	6	0%	possibly_damaging(0.792)	deleterious(0.01)	deleterious(0.703)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114357737	114357737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.R623H	1.000	426	0%	422	10.9%	2	0%	benign(0.304)	deleterious(0.01)	deleterious(0.500)	NULL
UPF3B	65109	genome.wustl.edu	37	X	118975093	118975093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080632.1	-1	reviewed	p.K251N	1.000	915	0.1%	864	20.8%	1	0%	unknown(0)	deleterious(0.03)	-	NULL
CUL4B	8450	genome.wustl.edu	37	X	119677988	119677988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003588.3	-1	reviewed	p.K403T	1.000	257	0%	274	31.4%	2	100%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMPfam_Cullin,superfamily_Cullin repeat
C1GALT1C1	29071	genome.wustl.edu	37	X	119760607	119760607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011551.2	-1	reviewed	p.W139G	1.000	64	0%	65	23.1%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRIA3	2892	genome.wustl.edu	37	X	122536945	122536945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000264357	+1	known	p.R394Q	1.000	211	0.5%	186	10.8%	0	-	probably_damaging(0.986)	tolerated(0.41)	neutral(0.450)	superfamily_Periplasmic binding protein-like I
STAG2	10735	genome.wustl.edu	37	X	123189994	123189994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.L405I	1.000	200	0%	188	22.9%	4	100%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_ARM-type_fold
STAG2	10735	genome.wustl.edu	37	X	123210230	123210230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.R861K	1.000	166	0%	197	23.9%	9	0%	benign(0.255)	tolerated(0.13)	neutral(0.279)	superfamily_ARM-type_fold
SMARCA1	6594	genome.wustl.edu	37	X	128652422	128652422	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.K59N	1.000	204	0%	233	21.5%	8	100%	unknown(0)	tolerated(0.13)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
UTP14A	10813	genome.wustl.edu	37	X	129059969	129059969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006649.3	+1	reviewed	p.F608L	1.000	346	0%	335	10.7%	10	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Utp14
TFDP3	51270	genome.wustl.edu	37	X	132351105	132351105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016521.2	-1	reviewed	p.D395N	0.994	72	1.4%	43	37.2%	0	-	unknown(0)	deleterious(0)	-	NULL
CCDC160	347475	genome.wustl.edu	37	X	133379094	133379094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101357.1	+1	provisional	p.K88N	0.018	64	0%	57	35.1%	0	-	benign(0.052)	tolerated(0.31)	neutral(0.030)	NULL
LOC728470	728470	genome.wustl.edu	37	X	134326970	134326970	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343844.1	-1	model	p.F46	0.018	197	0%	123	25.2%	0	-	-	-	-	NULL
ZNF449	203523	genome.wustl.edu	37	X	134494166	134494166	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152695.5	+1	reviewed	p.K241T	0.053	19	0%	24	25%	0	-	probably_damaging(0.98)	tolerated(0.66)	neutral(0.426)	NULL
SAGE1	55511	genome.wustl.edu	37	X	134991806	134991806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018666.2	+1	reviewed	p.V531I	0.000	197	0%	198	17.2%	0	-	benign(0.23)	tolerated(0.77)	neutral(0.024)	NULL
SAGE1	55511	genome.wustl.edu	37	X	134992290	134992290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018666.2	+1	reviewed	p.A609S	0.005	231	0%	202	27.7%	0	-	benign(0.183)	tolerated(0.73)	neutral(0.019)	NULL
GPR112	139378	genome.wustl.edu	37	X	135487991	135487991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.R2932Q	0.000	336	0%	284	34.9%	0	-	possibly_damaging(0.949)	deleterious(0.03)	deleterious(0.758)	HMMPfam_7tm_2
HTATSF1	27336	genome.wustl.edu	37	X	135593666	135593666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014500.4	+1	reviewed	p.L588I	0.000	68	0%	72	23.6%	2	0%	possibly_damaging(0.832)	tolerated(0.38)	neutral(0.335)	NULL
FGF13	2258	genome.wustl.edu	37	X	137717639	137717639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139500.1	-1	reviewed	p.F204V	1.000	401	0%	339	23.6%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
F9	2158	genome.wustl.edu	37	X	138643011	138643011	+	Missense_Mutation	SNP	G	G	A	rs137852247		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000133.3	+1	reviewed	p.A279T	0.988	507	0%	390	33.6%	0	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MCF2	4168	genome.wustl.edu	37	X	138698524	138698524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099855.1	-1	reviewed	p.L430I	1.000	54	0%	60	46.7%	0	-	probably_damaging(0.992)	tolerated(0.11)	deleterious(0.719)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138869378	138869378	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.R519*	0.023	290	0%	257	27.2%	0	-	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP11C	286410	genome.wustl.edu	37	X	138882267	138882267	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.F224C	1.000	213	0%	227	31.7%	4	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_Calcium ATPase transduction domain A
ATP11C	286410	genome.wustl.edu	37	X	138901537	138901537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.R69I	1.000	68	0%	92	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140983095	140983095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138702.1	+1	reviewed	p.R317Q	0.003	96	0%	90	17.8%	0	-	unknown(0)	-	-	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140985099	140985099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138702.1	+1	reviewed	p.D519N	0.000	174	0%	144	21.5%	0	-	possibly_damaging(0.495)	tolerated(0.55)	neutral(0.172)	HMMPfam_MAGE
MAGEC1	9947	genome.wustl.edu	37	X	140994515	140994515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005462.4	+1	reviewed	p.P442H	0.290	292	0%	333	17.7%	0	-	unknown(0)	deleterious(0)	-	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144904043	144904043	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.L34	0.993	141	0%	140	20%	0	-	-	-	-	HMMSmart_SM00013,superfamily_L domain-like
MAGEA11	4110	genome.wustl.edu	37	X	148797493	148797493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005366.4	+1	reviewed	p.R116I	0.001	69	0%	63	33.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
MTM1	4534	genome.wustl.edu	37	X	149828909	149828909	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.C473	1.000	474	0%	444	19.4%	0	-	-	-	-	superfamily_SSF52799
MAGEA10	4109	genome.wustl.edu	37	X	151303631	151303631	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011543.1	-1	reviewed	p.P154	0.000	137	0%	134	31.3%	0	-	-	-	-	HMMPfam_MAGE
ABCD1	215	genome.wustl.edu	37	X	153001625	153001625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000033.3	+1	reviewed	p.R381C	0.999	117	0%	79	45.6%	16	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLXNB3	5365	genome.wustl.edu	37	X	153043105	153043105	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448847	+1	known	p.S45L	0.816	117	0%	73	31.5%	21	90.4%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
IDH3G	3421	genome.wustl.edu	37	X	153051378	153051378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454076	-1	known	p.G195*	1.000	56	0%	41	22%	446	0%	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
HCFC1	3054	genome.wustl.edu	37	X	153230037	153230037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005334.2	-1	reviewed	p.E112K	1.000	236	0%	193	26.4%	18	0%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
FLNA	2316	genome.wustl.edu	37	X	153581420	153581420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.E2059K	0.999	70	0%	58	41.4%	254	0%	probably_damaging(0.959)	tolerated(0.05)	deleterious(0.748)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
F8	2157	genome.wustl.edu	37	X	154158413	154158413	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.E1218*	0.022	55	0%	67	17.9%	0	-	-	-	-	NULL
F8	2157	genome.wustl.edu	37	X	154194801	154194801	+	Missense_Mutation	SNP	G	G	A	rs137852364		TCGA-D1-A16X-01A-11D-A12J-09	TCGA-D1-A16X-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.R391C	0.995	264	0%	215	14%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
