GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.CESC.2012_07_07__00_00_03.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationid | mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues6447771578407985754.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues8934069808533447624.tsv |
GDAC_MergeDataFiles2 output filename | CESC |
GDAC_MergeDataFiles2 row_column | column |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data |
Execution Times: | |
Submitted: | 18:05:53 13-07-12 |
Completed: | |
Elapsed: | 01 hrs 39 mins 35 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 127771] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.CESC.2012_07_07__00_00_03.samplestamp.txt |
annotationid | mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data |
sdrffilename | |
datapathsfile | dependentsValues6447771578407985754.tsv |
Output Files: | |
CESC.merger.sdrf.txt | |
dcc_archive.properties | |
.lsf.out | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 18:05:54 13-07-12 |
Completed: | 18:06:27 13-07-12 |
Elapsed: | 00 hrs 00 mins 32 secs |
step 2. GDAC_MergeDataFiles [id: 127772] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | dependentsValues8934069808533447624.tsv |
output filename | CESC |
row_column | column |
num_headers | 1 |
filetype | mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data |
Output Files: | |
CESC.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt | |
stdout.txt |
Execution Times: | |
Submitted: | 18:05:54 13-07-12 |
Completed: | 19:45:21 13-07-12 |
Elapsed: | 01 hrs 39 mins 27 secs |