Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACTL6A	86	hgsc.bcm.edu	37	3	179287950	179287950	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112175983	112175983	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATF4	468	hgsc.bcm.edu	37	22	39917799	39917799	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATM	472	hgsc.bcm.edu	37	11	108142044	108142044	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP2B4	493	hgsc.bcm.edu	37	1	203669444	203669444	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BMP3	651	hgsc.bcm.edu	37	4	81967700	81967700	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C9	735	hgsc.bcm.edu	37	5	39308460	39308460	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CBL	867	hgsc.bcm.edu	37	11	119149243	119149243	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLCA4	22802	hgsc.bcm.edu	37	1	87045773	87045773	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CYP4A22	284541	hgsc.bcm.edu	37	1	47611565	47611565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ETS1	2113	hgsc.bcm.edu	37	11	128354817	128354817	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM129C	199786	hgsc.bcm.edu	37	19	17653043	17653043	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM200B	285550	hgsc.bcm.edu	37	4	15690353	15690353	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FLT1	2321	hgsc.bcm.edu	37	13	28980000	28980000	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNAB1	7881	hgsc.bcm.edu	37	3	156234114	156234114	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP5-8	57830	hgsc.bcm.edu	37	11	71249545	71249545	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LCE1F	353137	hgsc.bcm.edu	37	1	152749037	152749042	+	In_Frame_Del	DEL	GGTGGT	GGTGGT	-	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	GGTGGT	GGTGGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRRC66	339977	hgsc.bcm.edu	37	4	52862002	52862002	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LTBP4	8425	hgsc.bcm.edu	37	19	41123096	41123096	+	Missense_Mutation	SNP	T	T	G	rs67191199	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MGAM	8972	hgsc.bcm.edu	37	7	141722199	141722199	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLL	4297	hgsc.bcm.edu	37	11	118374635	118374635	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MMRN1	22915	hgsc.bcm.edu	37	4	90857577	90857577	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NXF1	10482	hgsc.bcm.edu	37	11	62569657	62569657	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE4DIP	9659	hgsc.bcm.edu	37	1	144879422	144879422	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRK	5796	hgsc.bcm.edu	37	6	128303991	128303991	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEMA3A	10371	hgsc.bcm.edu	37	7	83764252	83764252	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRRM2	23524	hgsc.bcm.edu	37	16	2820865	2820865	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STAT4	6775	hgsc.bcm.edu	37	2	191931230	191931230	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM146	257062	hgsc.bcm.edu	37	19	5763259	5763259	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
XRCC6BP1	91419	hgsc.bcm.edu	37	12	58340808	58340808	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
YARS2	51067	hgsc.bcm.edu	37	12	32908125	32908125	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMYND10	51364	hgsc.bcm.edu	37	3	50378868	50378868	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3426-01A-02D-1386-10	TCGA-AK-3426-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
