Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSM2B	348158	hgsc.bcm.edu	37	16	20570686	20570686	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARV1	64801	hgsc.bcm.edu	37	1	231131724	231131724	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASS1	445	hgsc.bcm.edu	37	9	133339550	133339550	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP13A2	23400	hgsc.bcm.edu	37	1	17331235	17331235	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAI3	577	hgsc.bcm.edu	37	6	69943308	69943308	+	Silent	SNP	A	A	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BICD2	23299	hgsc.bcm.edu	37	9	95481408	95481408	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BTNL3	10917	hgsc.bcm.edu	37	5	180429757	180429759	+	In_Frame_Del	DEL	GAT	GAT	-	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	GAT	GAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1orf52	148423	hgsc.bcm.edu	37	1	85724326	85724326	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1QTNF9	338872	hgsc.bcm.edu	37	13	24895805	24895805	+	Missense_Mutation	SNP	G	G	A	rs4589405	unknown	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CIAO1	9391	hgsc.bcm.edu	37	2	96933644	96933644	+	Silent	SNP	T	T	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EGR3	1960	hgsc.bcm.edu	37	8	22550417	22550417	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EIF5A	1984	hgsc.bcm.edu	37	17	7213099	7213099	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM153A	285596	hgsc.bcm.edu	37	5	177164044	177164044	+	Missense_Mutation	SNP	G	A	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM83C	128876	hgsc.bcm.edu	37	20	33875700	33875700	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HK1	3098	hgsc.bcm.edu	37	10	71146158	71146158	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-B	3106	hgsc.bcm.edu	37	6	31323296	31323296	+	Silent	SNP	A	A	G	rs111886199	unknown	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HMP19	51617	hgsc.bcm.edu	37	5	173534370	173534370	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITGAE	3682	hgsc.bcm.edu	37	17	3663516	3663516	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KDM6B	23135	hgsc.bcm.edu	37	17	7753474	7753474	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0754	643314	hgsc.bcm.edu	37	1	39877885	39877885	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLK2	3817	hgsc.bcm.edu	37	19	51378101	51378101	+	Silent	SNP	C	C	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MRPL53	116540	hgsc.bcm.edu	37	2	74699716	74699716	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC6	4588	hgsc.bcm.edu	37	11	1017220	1017220	+	Missense_Mutation	SNP	T	T	C	rs56238842	unknown	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NEB	4703	hgsc.bcm.edu	37	2	152347020	152347020	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NIPBL	25836	hgsc.bcm.edu	37	5	37064853	37064853	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NXF2	56001	hgsc.bcm.edu	37	X	101581404	101581404	+	Silent	SNP	A	G	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR2T27	403239	hgsc.bcm.edu	37	1	248813292	248813292	+	Silent	SNP	T	T	C	rs71199329	unknown	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OTOP1	133060	hgsc.bcm.edu	37	4	4190683	4190683	+	Silent	SNP	G	G	A	rs116072164	unknown	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PARP4	143	hgsc.bcm.edu	37	13	25044068	25044068	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCNX	22990	hgsc.bcm.edu	37	14	71444859	71444859	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHGDH	26227	hgsc.bcm.edu	37	1	120277939	120277939	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHKG1	5260	hgsc.bcm.edu	37	7	56155465	56155465	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP2CA	5515	hgsc.bcm.edu	37	5	133533531	133533531	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPN6	5777	hgsc.bcm.edu	37	12	7061265	7061265	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBPMS	11030	hgsc.bcm.edu	37	8	30361883	30361883	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SAGE1	55511	hgsc.bcm.edu	37	X	134993859	134993859	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC22A6	9356	hgsc.bcm.edu	37	11	62751128	62751128	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC35B2	347734	hgsc.bcm.edu	37	6	44224154	44224154	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SOX14	8403	hgsc.bcm.edu	37	3	137483860	137483860	+	Silent	SNP	A	A	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SSH2	85464	hgsc.bcm.edu	37	17	28022502	28022502	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYT15	83849	hgsc.bcm.edu	37	10	46969312	46969312	+	Missense_Mutation	SNP	G	G	A	rs55894256	unknown	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBR1	10716	hgsc.bcm.edu	37	2	162273245	162273245	+	Silent	SNP	T	T	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TFEB	7942	hgsc.bcm.edu	37	6	41655521	41655521	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
THAP4	51078	hgsc.bcm.edu	37	2	242542473	242542473	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM131	23505	hgsc.bcm.edu	37	2	98429106	98429106	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM51	55092	hgsc.bcm.edu	37	1	15546034	15546034	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIM73	375593	hgsc.bcm.edu	37	7	75033015	75033015	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTC13	79573	hgsc.bcm.edu	37	1	231064691	231064691	+	Silent	SNP	G	G	C	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TXNDC5	81567	hgsc.bcm.edu	37	6	7904905	7904905	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UGT3A1	133688	hgsc.bcm.edu	37	5	35965615	35965615	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10191563	10191563	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WARS	7453	hgsc.bcm.edu	37	14	100801317	100801317	+	Silent	SNP	A	A	C	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF121	7675	hgsc.bcm.edu	37	19	9676687	9676687	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF417	147687	hgsc.bcm.edu	37	19	58421128	58421128	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
