Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA9	10350	hgsc.bcm.edu	37	17	67039701	67039701	+	Silent	SNP	G	G	C	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
APOB48R	55911	hgsc.bcm.edu	37	16	28509409	28509409	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP6V1B1	525	hgsc.bcm.edu	37	2	71186165	71186165	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATXN7L2	127002	hgsc.bcm.edu	37	1	110029637	110029637	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C3orf63	23272	hgsc.bcm.edu	37	3	56662597	56662597	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf91	203197	hgsc.bcm.edu	37	9	117386654	117386654	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1C	775	hgsc.bcm.edu	37	12	2702386	2702386	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC62	84660	hgsc.bcm.edu	37	12	123285867	123285867	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CEP250	11190	hgsc.bcm.edu	37	20	34050332	34050332	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CUL9	23113	hgsc.bcm.edu	37	6	43154085	43154085	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DGKB	1607	hgsc.bcm.edu	37	7	14880860	14880860	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHX32	55760	hgsc.bcm.edu	37	10	127530464	127530464	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNMBP	23268	hgsc.bcm.edu	37	10	101728908	101728908	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DOK3	79930	hgsc.bcm.edu	37	5	176932106	176932107	+	Frame_Shift_Del	DEL	TG	TG	-	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DSCAML1	57453	hgsc.bcm.edu	37	11	117351250	117351250	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM135B	51059	hgsc.bcm.edu	37	8	139180173	139180173	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXO38	81545	hgsc.bcm.edu	37	5	147821566	147821566	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GDPD4	220032	hgsc.bcm.edu	37	11	76969447	76969447	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GINS3	64785	hgsc.bcm.edu	37	16	58437164	58437165	+	Frame_Shift_Del	DEL	TA	TA	-	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	TA	TA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GMEB1	10691	hgsc.bcm.edu	37	1	29018200	29018200	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GYS2	2998	hgsc.bcm.edu	37	12	21711188	21711188	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HELQ	113510	hgsc.bcm.edu	37	4	84376821	84376821	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MN1	4330	hgsc.bcm.edu	37	22	28146982	28146982	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NSUN6	221078	hgsc.bcm.edu	37	10	18837163	18837163	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PGCP	10404	hgsc.bcm.edu	37	8	97892231	97892231	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIK3C3	5289	hgsc.bcm.edu	37	18	39576650	39576650	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLIN1	5346	hgsc.bcm.edu	37	15	90212792	90212792	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POR	5447	hgsc.bcm.edu	37	7	75615694	75615695	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKDC	5591	hgsc.bcm.edu	37	8	48805713	48805713	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PSD3	23362	hgsc.bcm.edu	37	8	18662356	18662356	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBBP9	10741	hgsc.bcm.edu	37	20	18477770	18477770	+	Frame_Shift_Del	DEL	T	T	-	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RRP9	9136	hgsc.bcm.edu	37	3	51972151	51972151	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SALL1	6299	hgsc.bcm.edu	37	16	51174659	51174659	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD5	55209	hgsc.bcm.edu	37	3	9515023	9515023	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SGPP2	130367	hgsc.bcm.edu	37	2	223386613	223386613	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SOX14	8403	hgsc.bcm.edu	37	3	137483822	137483822	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SRRD	402055	hgsc.bcm.edu	37	22	26886035	26886035	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SRSF2IP	9169	hgsc.bcm.edu	37	12	46322579	46322579	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBRG4	9238	hgsc.bcm.edu	37	7	45144176	45144176	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM128	85013	hgsc.bcm.edu	37	4	4239587	4239587	+	Silent	SNP	G	G	T	rs62286915	unknown	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNFSF8	944	hgsc.bcm.edu	37	9	117692493	117692493	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTC23L	153657	hgsc.bcm.edu	37	5	34867107	34867107	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TWSG1	57045	hgsc.bcm.edu	37	18	9399343	9399343	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZCCHC12	170261	hgsc.bcm.edu	37	X	117959578	117959578	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
