Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ASPM	259266	hgsc.bcm.edu	37	1	197091545	197091545	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP10A	57194	hgsc.bcm.edu	37	15	25962054	25962054	+	Silent	SNP	G	G	A	rs116705123	unknown	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BBS1	582	hgsc.bcm.edu	37	11	66297411	66297411	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BDP1	55814	hgsc.bcm.edu	37	5	70791112	70791112	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1QTNF9B	387911	hgsc.bcm.edu	37	13	24471048	24471048	+	Silent	SNP	C	C	T	rs35159134	unknown	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1RL	51279	hgsc.bcm.edu	37	12	7249125	7249125	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C3	718	hgsc.bcm.edu	37	19	6712315	6712315	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC74B	91409	hgsc.bcm.edu	37	2	130898813	130898813	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDCP1	64866	hgsc.bcm.edu	37	3	45136920	45136920	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH6	1004	hgsc.bcm.edu	37	5	31323053	31323053	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL1A1	1277	hgsc.bcm.edu	37	17	48270373	48270373	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CPXM1	56265	hgsc.bcm.edu	37	20	2775056	2775056	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CTNND1	1500	hgsc.bcm.edu	37	11	57559133	57559133	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CTNND1	1500	hgsc.bcm.edu	37	11	57569331	57569331	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH10	196385	hgsc.bcm.edu	37	12	124315185	124315185	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNPEP	23549	hgsc.bcm.edu	37	2	220251628	220251628	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM196B	100131897	hgsc.bcm.edu	37	5	169310004	169310004	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GART	2618	hgsc.bcm.edu	37	21	34911565	34911565	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HERC5	51191	hgsc.bcm.edu	37	4	89410456	89410456	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRT18	3875	hgsc.bcm.edu	37	12	53344140	53344140	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KSR2	283455	hgsc.bcm.edu	37	12	118105411	118105411	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MLL3	58508	hgsc.bcm.edu	37	7	152055740	152055740	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBPF1	55672	hgsc.bcm.edu	37	1	16890598	16890598	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NPHS1	4868	hgsc.bcm.edu	37	19	36330263	36330263	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUP54	53371	hgsc.bcm.edu	37	4	77039339	77039339	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PARG	8505	hgsc.bcm.edu	37	10	51363403	51363403	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRDX3	10935	hgsc.bcm.edu	37	10	120931915	120931915	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTEN	5728	hgsc.bcm.edu	37	10	89720823	89720824	+	Frame_Shift_Del	DEL	TT	TT	-	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RB1	5925	hgsc.bcm.edu	37	13	48941648	48941648	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPANXN1	494118	hgsc.bcm.edu	37	X	144337316	144337316	+	Silent	SNP	G	G	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TP53	7157	hgsc.bcm.edu	37	17	7578222	7578223	+	Frame_Shift_Del	DEL	TC	TC	-	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	TC	TC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TP53	7157	hgsc.bcm.edu	37	17	7578223	7578223	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP26	83844	hgsc.bcm.edu	37	X	132160682	132160682	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VCAN	1462	hgsc.bcm.edu	37	5	82875807	82875807	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZMYND15	84225	hgsc.bcm.edu	37	17	4646673	4646673	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF33B	7582	hgsc.bcm.edu	37	10	43090138	43090138	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF432	9668	hgsc.bcm.edu	37	19	52537674	52537674	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF432	9668	hgsc.bcm.edu	37	19	52537852	52537852	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF432	9668	hgsc.bcm.edu	37	19	52538020	52538020	+	Silent	SNP	G	G	C	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF432	9668	hgsc.bcm.edu	37	19	52538279	52538279	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF432	9668	hgsc.bcm.edu	37	19	52538393	52538393	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF432	9668	hgsc.bcm.edu	37	19	52538516	52538516	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF432	9668	hgsc.bcm.edu	37	19	52538563	52538563	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF845	91664	hgsc.bcm.edu	37	19	53856496	53856496	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4696-01A-01D-1361-10	TCGA-B0-4696-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
