Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA13	154664	hgsc.bcm.edu	37	7	48654937	48654937	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADAMTS5	11096	hgsc.bcm.edu	37	21	28327065	28327065	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ALDH1A3	220	hgsc.bcm.edu	37	15	101440802	101440802	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARFIP1	27236	hgsc.bcm.edu	37	4	153784771	153784771	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP6	395	hgsc.bcm.edu	37	X	11196235	11196235	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP13A2	23400	hgsc.bcm.edu	37	1	17332192	17332192	+	Missense_Mutation	SNP	G	G	A	rs72030488	unknown	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAI1	575	hgsc.bcm.edu	37	8	143570438	143570438	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BIRC6	57448	hgsc.bcm.edu	37	2	32724916	32724916	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C11orf82	220042	hgsc.bcm.edu	37	11	82625795	82625795	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C14orf79	122616	hgsc.bcm.edu	37	14	105452999	105452999	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1F	778	hgsc.bcm.edu	37	X	49064986	49064986	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC14	64770	hgsc.bcm.edu	37	3	123663774	123663774	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CUL9	23113	hgsc.bcm.edu	37	6	43174224	43174224	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHX9	1660	hgsc.bcm.edu	37	1	182841491	182841491	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DLGAP5	9787	hgsc.bcm.edu	37	14	55642076	55642076	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DSN1	79980	hgsc.bcm.edu	37	20	35395179	35395179	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EIF2AK1	27102	hgsc.bcm.edu	37	7	6068611	6068611	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EME1	146956	hgsc.bcm.edu	37	17	48458125	48458125	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERBB4	2066	hgsc.bcm.edu	37	2	212530139	212530139	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ETF1	2107	hgsc.bcm.edu	37	5	137853329	137853329	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM64A	54478	hgsc.bcm.edu	37	17	6348463	6348464	+	Frame_Shift_Del	DEL	CG	CG	-	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	CG	CG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FLT4	2324	hgsc.bcm.edu	37	5	180053263	180053263	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GIF	2694	hgsc.bcm.edu	37	11	59610539	59610539	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPHN	10243	hgsc.bcm.edu	37	14	67647611	67647611	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HUWE1	10075	hgsc.bcm.edu	37	X	53578289	53578289	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IFIH1	64135	hgsc.bcm.edu	37	2	163150172	163150172	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
INSR	3643	hgsc.bcm.edu	37	19	7141807	7141807	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITK	3702	hgsc.bcm.edu	37	5	156641211	156641215	+	Frame_Shift_Del	DEL	ATAAT	ATAAT	-	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	ATAAT	ATAAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITPRIPL1	150771	hgsc.bcm.edu	37	2	96993827	96993827	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LTBP1	4052	hgsc.bcm.edu	37	2	33412083	33412083	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MDGA2	161357	hgsc.bcm.edu	37	14	47613397	47613397	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NDRG4	65009	hgsc.bcm.edu	37	16	58542877	58542877	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NEBL	10529	hgsc.bcm.edu	37	10	21098771	21098771	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR51S1	119692	hgsc.bcm.edu	37	11	4870047	4870047	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR8D2	283160	hgsc.bcm.edu	37	11	124189235	124189235	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDH19	57526	hgsc.bcm.edu	37	X	99551677	99551677	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PGCP	10404	hgsc.bcm.edu	37	8	97892144	97892144	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRRT2	112476	hgsc.bcm.edu	37	16	29825764	29825764	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RIN1	9610	hgsc.bcm.edu	37	11	66100041	66100041	+	Silent	SNP	A	A	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RSF1	51773	hgsc.bcm.edu	37	11	77378369	77378369	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCN10A	6336	hgsc.bcm.edu	37	3	38797358	38797358	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCN7A	6332	hgsc.bcm.edu	37	2	167262931	167262931	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCRIB	23513	hgsc.bcm.edu	37	8	144877694	144877694	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD1B	23067	hgsc.bcm.edu	37	12	122243975	122243975	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC16A14	151473	hgsc.bcm.edu	37	2	230923815	230923815	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC45A3	85414	hgsc.bcm.edu	37	1	205631992	205631992	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC4A1	6521	hgsc.bcm.edu	37	17	42328876	42328876	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STARD9	57519	hgsc.bcm.edu	37	15	42979926	42979926	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNE1	23345	hgsc.bcm.edu	37	6	152621860	152621860	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNRG	11276	hgsc.bcm.edu	37	17	35937592	35937592	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM66	51669	hgsc.bcm.edu	37	8	29931544	29931544	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIM6	117854	hgsc.bcm.edu	37	11	5632213	5632213	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TYW1	55253	hgsc.bcm.edu	37	7	66703328	66703328	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UNC80	285175	hgsc.bcm.edu	37	2	210678485	210678485	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10191480	10191480	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZDBF2	57683	hgsc.bcm.edu	37	2	207171516	207171516	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF329	79673	hgsc.bcm.edu	37	19	58640668	58640668	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF493	284443	hgsc.bcm.edu	37	19	21606276	21606277	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
