Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACTR3B	57180	hgsc.bcm.edu	37	7	152522195	152522195	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ALPI	248	hgsc.bcm.edu	37	2	233322958	233322958	+	Silent	SNP	T	T	C	rs41265121	unknown	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKRD35	148741	hgsc.bcm.edu	37	1	145566760	145566760	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASXL1	171023	hgsc.bcm.edu	37	20	31022922	31022922	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATAD3C	219293	hgsc.bcm.edu	37	1	1391244	1391244	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP13A5	344905	hgsc.bcm.edu	37	3	193036861	193036861	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf82	79886	hgsc.bcm.edu	37	9	26861129	26861129	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CBWD3	445571	hgsc.bcm.edu	37	9	70863777	70863777	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDC42EP3	10602	hgsc.bcm.edu	37	2	37873389	37873389	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DEF8	54849	hgsc.bcm.edu	37	16	90025607	90025607	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DOCK11	139818	hgsc.bcm.edu	37	X	117707902	117707902	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DOCK3	1795	hgsc.bcm.edu	37	3	51400103	51400103	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DUOX1	53905	hgsc.bcm.edu	37	15	45440634	45440634	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPHB6	2051	hgsc.bcm.edu	37	7	142561921	142561921	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPHB6	2051	hgsc.bcm.edu	37	7	142566756	142566756	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM129A	116496	hgsc.bcm.edu	37	1	184859343	184859343	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR50	9248	hgsc.bcm.edu	37	X	150349562	150349562	+	Frame_Shift_Del	DEL	A	A	-	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTF2I	2969	hgsc.bcm.edu	37	7	74129238	74129238	+	Splice_Site	SNP	T	T	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IL28B	282617	hgsc.bcm.edu	37	19	39734352	39734352	+	Missense_Mutation	SNP	C	C	T	rs62120527	unknown	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IRF2BP2	359948	hgsc.bcm.edu	37	1	234743339	234743339	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
JAKMIP1	152789	hgsc.bcm.edu	37	4	6087193	6087193	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOMO2	283820	hgsc.bcm.edu	37	16	18528574	18528574	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRG1	3084	hgsc.bcm.edu	37	8	32621790	32621790	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NXPH4	11247	hgsc.bcm.edu	37	12	57619000	57619000	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PAN2	9924	hgsc.bcm.edu	37	12	56720445	56720445	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCIF1	63935	hgsc.bcm.edu	37	20	44572023	44572023	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDPR	55066	hgsc.bcm.edu	37	16	70154480	70154480	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POTED	317754	hgsc.bcm.edu	37	21	14987721	14987721	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POTED	317754	hgsc.bcm.edu	37	21	15011856	15011856	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP4C	5531	hgsc.bcm.edu	37	16	30096007	30096007	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPN23	25930	hgsc.bcm.edu	37	3	47449932	47449932	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PWWP2A	114825	hgsc.bcm.edu	37	5	159520688	159520688	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RIMS1	22999	hgsc.bcm.edu	37	6	73000565	73000565	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SAP30	8819	hgsc.bcm.edu	37	4	174292632	174292632	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SFRS18	25957	hgsc.bcm.edu	37	6	99848473	99848473	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SHMT2	6472	hgsc.bcm.edu	37	12	57625269	57625269	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIAE	54414	hgsc.bcm.edu	37	11	124509622	124509622	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SSFA2	6744	hgsc.bcm.edu	37	2	182765606	182765606	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SSPO	23145	hgsc.bcm.edu	37	7	149516805	149516805	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STAT5B	6777	hgsc.bcm.edu	37	17	40375493	40375493	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TCEAL3	85012	hgsc.bcm.edu	37	X	102864442	102864442	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TGFBR2	7048	hgsc.bcm.edu	37	3	30713652	30713652	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNN	63923	hgsc.bcm.edu	37	1	175086270	175086270	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR13	64743	hgsc.bcm.edu	37	X	48458031	48458031	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XRN1	54464	hgsc.bcm.edu	37	3	142051287	142051287	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF619	285267	hgsc.bcm.edu	37	3	40528385	40528385	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF780B	163131	hgsc.bcm.edu	37	19	40540306	40540306	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
