Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAD2	161931	hgsc.bcm.edu	37	16	84227694	84227694	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP31	57514	hgsc.bcm.edu	37	3	119133102	119133102	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATRN	8455	hgsc.bcm.edu	37	20	3627468	3627468	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C10orf12	26148	hgsc.bcm.edu	37	10	98741230	98741230	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDKL3	51265	hgsc.bcm.edu	37	5	133655130	133655130	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHRNA2	1135	hgsc.bcm.edu	37	8	27319259	27319259	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COPA	1314	hgsc.bcm.edu	37	1	160261203	160261203	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DAB2	1601	hgsc.bcm.edu	37	5	39381655	39381655	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHX34	9704	hgsc.bcm.edu	37	19	47856609	47856609	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DLL4	54567	hgsc.bcm.edu	37	15	41228880	41228880	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EBLN2	55096	hgsc.bcm.edu	37	3	73111546	73111546	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ENDOD1	23052	hgsc.bcm.edu	37	11	94862593	94862593	+	Silent	SNP	T	T	G	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPS15L1	58513	hgsc.bcm.edu	37	19	16552710	16552710	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERCC8	1161	hgsc.bcm.edu	37	5	60183307	60183307	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FEZ2	9637	hgsc.bcm.edu	37	2	36785599	36785599	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTSF1L	149699	hgsc.bcm.edu	37	20	42355035	42355035	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HECW1	23072	hgsc.bcm.edu	37	7	43594307	43594307	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32629137	32629137	+	Missense_Mutation	SNP	T	T	G	rs1140343	unknown	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32634350	32634350	+	Missense_Mutation	SNP	T	T	C	rs76331164	unknown	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LAMA3	3909	hgsc.bcm.edu	37	18	21422710	21422710	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MEPE	56955	hgsc.bcm.edu	37	4	88755919	88755919	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYH11	4629	hgsc.bcm.edu	37	16	15931906	15931906	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYOM2	9172	hgsc.bcm.edu	37	8	2033423	2033423	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NDFIP1	80762	hgsc.bcm.edu	37	5	141517333	141517333	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NR2F2	7026	hgsc.bcm.edu	37	15	96880591	96880591	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR14I1	401994	hgsc.bcm.edu	37	1	248845202	248845202	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR1L8	138881	hgsc.bcm.edu	37	9	125330260	125330260	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRAMEF12	390999	hgsc.bcm.edu	37	1	12837652	12837652	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRAMEF12	390999	hgsc.bcm.edu	37	1	12837664	12837664	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPH3A	22895	hgsc.bcm.edu	37	12	113304584	113304584	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SHPK	23729	hgsc.bcm.edu	37	17	3518702	3518702	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC38A2	54407	hgsc.bcm.edu	37	12	46760866	46760866	+	Silent	SNP	G	G	A	rs36022751	unknown	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMG6	23293	hgsc.bcm.edu	37	17	2203323	2203323	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIM28	10155	hgsc.bcm.edu	37	19	59060881	59060881	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TUBA3C	7278	hgsc.bcm.edu	37	13	19751274	19751274	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF133	7692	hgsc.bcm.edu	37	20	18297069	18297069	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF786	136051	hgsc.bcm.edu	37	7	148768360	148768360	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
