Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACCS	84680	hgsc.bcm.edu	37	11	44104723	44104723	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ALG3	10195	hgsc.bcm.edu	37	3	183963025	183963025	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C10orf140	387640	hgsc.bcm.edu	37	10	21804074	21804074	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C2orf16	84226	hgsc.bcm.edu	37	2	27799674	27799674	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf93	203238	hgsc.bcm.edu	37	9	15971713	15971713	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1H	8912	hgsc.bcm.edu	37	16	1248701	1248701	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD79A	973	hgsc.bcm.edu	37	19	42384963	42384963	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNTNAP1	8506	hgsc.bcm.edu	37	17	40844515	40844515	+	Splice_Site	SNP	A	A	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DFNB31	25861	hgsc.bcm.edu	37	9	117169033	117169033	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAJB8	165721	hgsc.bcm.edu	37	3	128181552	128181552	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPS8L2	64787	hgsc.bcm.edu	37	11	710455	710455	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ESYT2	57488	hgsc.bcm.edu	37	7	158590762	158590762	+	Silent	SNP	T	T	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FCGBP	8857	hgsc.bcm.edu	37	19	40408822	40408822	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FREM1	158326	hgsc.bcm.edu	37	9	14859188	14859188	+	Silent	SNP	T	T	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR115	221393	hgsc.bcm.edu	37	6	47684543	47684543	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTF3C1	2975	hgsc.bcm.edu	37	16	27504602	27504602	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HP1BP3	50809	hgsc.bcm.edu	37	1	21100040	21100040	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HRAS	3265	hgsc.bcm.edu	37	11	533545	533545	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA2026	158358	hgsc.bcm.edu	37	9	5968932	5968932	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLHDC2	23588	hgsc.bcm.edu	37	14	50249623	50249623	+	Silent	SNP	T	T	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRT79	338785	hgsc.bcm.edu	37	12	53218102	53218103	+	Frame_Shift_Del	DEL	CA	CA	-	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MED13	9969	hgsc.bcm.edu	37	17	60140649	60140649	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MLL2	8085	hgsc.bcm.edu	37	12	49445333	49445333	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NDFIP1	80762	hgsc.bcm.edu	37	5	141520137	141520137	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OGT	8473	hgsc.bcm.edu	37	X	70756092	70756092	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PABPC1	26986	hgsc.bcm.edu	37	8	101725408	101725408	+	Silent	SNP	C	C	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PGC	5225	hgsc.bcm.edu	37	6	41711090	41711090	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHKA1	5255	hgsc.bcm.edu	37	X	71802268	71802268	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RC3H2	54542	hgsc.bcm.edu	37	9	125621286	125621286	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCN1A	6323	hgsc.bcm.edu	37	2	166847875	166847875	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAF7L	54457	hgsc.bcm.edu	37	X	100547952	100547952	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM169	92691	hgsc.bcm.edu	37	2	216965089	216965089	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIP10	9322	hgsc.bcm.edu	37	19	6744588	6744588	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TSHZ1	10194	hgsc.bcm.edu	37	18	72998919	72998919	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XYLT1	64131	hgsc.bcm.edu	37	16	17221643	17221643	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF442	79973	hgsc.bcm.edu	37	19	12460568	12460568	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF791	163049	hgsc.bcm.edu	37	19	12739410	12739410	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
